17-03-17 19:49:06.228 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:06.228 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:49:06.228 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:49:06.228 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:06.238 -07 000000424 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:49:06.238 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:49:06.238 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:06.238 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:49:06.238 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:49:06.238 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:49:06.358 -07 000000541 INF: FPGA: Recv YMVTO 154377 870
17-03-17 19:49:06.358 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-17 19:49:06.358 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:49:06.358 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:49:06.358 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.680 mm/sec
17-03-17 19:49:06.718 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:09.358 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:09.358 -07 000000618 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:49:09.368 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:49:09.368 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:09.378 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:49:09.378 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 19:49:09.378 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3149 ms
17-03-17 19:49:09.388 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 60° ===================
17-03-17 19:49:09.388 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:49:09.388 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:49:09.388 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:49:09.398 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:49:09.398 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:49:09.398 -07 000000547 INF: FPGA: Recv TEC2EN 
17-03-17 19:49:09.408 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:09.408 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 60° ===================
17-03-17 19:49:09.408 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:09.408 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:49:09.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:09.438 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:49:09.438 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:49:09.438 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:49:09.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:49:09.758 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:49:09.758 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:49:09.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:09.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:49:09.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:49:09.928 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:09.928 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:09.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:09.958 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:49:09.958 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:49:09.958 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:49:10.088 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:49:10.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:11.448 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.971733,
17-03-17 19:49:11.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:13.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:13.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:13.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:13.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:14.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:14.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:14.188 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:49:14.188 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:14.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:14.348 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:49:14.348 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:49:14.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:14.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:49:14.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:49:14.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:14.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:14.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:15.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:15.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:15.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:49:15.128 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:16.348 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:49:16.348 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:49:16.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:16.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:49:16.368 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:49:16.368 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:49:16.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:49:16.528 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:49:16.528 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:49:16.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:16.598 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:49:16.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:49:16.698 -07 000000610 INF: =================== Cycle #31, Pumping Reagent CMS (4) ===================
17-03-17 19:49:16.698 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:16.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:16.718 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:16.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:49:16.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:49:16.728 -07 000000610 INF: =================== Cycle #31, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:49:16.808 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.016692,
17-03-17 19:49:16.858 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:49:16.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:18.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:18.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:18.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:18.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:18.818 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:49:18.818 -07 000000610 INF: =================== Cycle #31, Pumping Reagent CMS (4) ===================
17-03-17 19:49:18.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:18.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:49:18.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:49:19.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:19.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:49:19.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:49:19.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:19.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:19.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:19.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:19.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:19.758 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:49:19.758 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:20.978 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:49:20.978 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:49:20.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:20.998 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:49:20.998 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:49:20.998 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:49:21.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:49:21.168 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:49:21.168 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:49:21.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:21.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:49:21.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:49:21.338 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:21.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:21.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:21.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:49:21.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:49:21.368 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:49:21.498 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:49:21.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:21.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:22.168 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.000345,
17-03-17 19:49:22.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:22.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:22.438 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:49:22.438 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:22.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:22.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:49:22.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:49:22.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:22.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:49:22.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:49:22.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:22.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:22.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:23.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:23.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:23.378 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:49:23.378 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:23.378 -07 000000551 INF: WaitCommand(10000) start
17-03-17 19:49:23.378 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:49:23.378 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:49:24.598 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:49:24.598 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-17 19:49:24.628 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:49:24.628 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:49:24.758 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:49:24.798 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:26.328 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:26.358 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:26.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:26.778 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:26.808 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:26.808 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:49:26.808 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:49:26.808 -07 000000561 INF: ===================  ===================
17-03-17 19:49:27.528 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.005817,
17-03-17 19:49:31.718 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:32.888 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.015368,
17-03-17 19:49:33.388 -07 000000551 INF: WaitCommand(10000) end
17-03-17 19:49:33.388 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:33.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:33.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:33.428 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:49:33.428 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:49:33.428 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:49:33.558 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:49:33.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:36.718 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:38.248 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.005817,
17-03-17 19:49:39.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:39.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:40.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:40.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:40.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:40.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:41.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:41.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:41.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:41.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:41.558 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:49:41.558 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:41.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:41.718 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:49:41.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:49:41.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 19:49:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:49:41.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:41.878 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:49:41.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:49:41.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:42.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:42.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:42.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:42.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:42.498 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:49:42.498 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:43.608 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.978563,
17-03-17 19:49:43.718 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:49:43.718 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:49:43.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:43.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:49:43.738 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:49:43.738 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:49:43.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:49:43.968 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:49:43.968 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:49:44.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:44.038 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:49:44.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:49:44.138 -07 000000610 INF: =================== Cycle #31, Pumping Reagent IMT (1) ===================
17-03-17 19:49:44.138 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:44.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:44.178 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:49:44.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:49:44.178 -07 000000610 INF: =================== Cycle #31, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:49:44.308 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:49:44.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:45.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:45.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:46.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:46.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:46.268 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:49:46.268 -07 000000610 INF: =================== Cycle #31, Pumping Reagent IMT (1) ===================
17-03-17 19:49:46.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:46.428 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:49:46.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:49:46.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:46.588 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:49:46.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:49:46.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:46.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:46.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:49:46.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:47.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:47.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:47.208 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:49:47.208 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:48.428 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:49:48.428 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:49:48.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:48.448 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:49:48.448 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:49:48.448 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:49:48.678 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:49:48.698 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:49:48.698 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:49:48.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:49:48.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:49:48.768 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:49:48.868 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:48.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:49:48.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:48.898 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:49:48.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:49:48.898 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:49:48.968 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.999021,
17-03-17 19:49:49.028 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:49:49.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:49:49.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:49.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:49.968 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:49:49.968 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:49:50.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:50.128 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:49:50.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:49:50.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:49:50.288 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:49:50.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:49:50.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:49:50.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:49:50.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:50.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:49:50.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:49:50.908 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:49:50.908 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:50.908 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 65° ===================
17-03-17 19:49:50.908 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:49:50.908 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:49:50.918 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:49:50.918 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:49:50.918 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:49:50.918 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 19:49:50.928 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:49:50.928 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 65° ===================
17-03-17 19:49:50.928 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:49:50.928 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:49:51.728 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:51.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:49:54.328 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.014009,
17-03-17 19:49:56.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:56.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:49:59.688 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.024884,
17-03-17 19:50:01.728 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:05.048 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.003063,
17-03-17 19:50:06.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:10.408 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.012614,
17-03-17 19:50:11.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:15.768 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.000345,
17-03-17 19:50:16.728 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:20.938 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:50:20.938 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:50:20.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:50:21.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:21.068 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:50:21.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:50:21.068 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:50:21.128 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.98264,
17-03-17 19:50:21.198 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:50:21.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:21.728 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:21.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:21.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:21.808 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 19:50:21.808 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:50:21.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:21.968 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:50:21.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:50:22.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:22.128 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:50:22.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:50:22.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:50:22.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:50:22.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:22.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:22.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:22.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:50:22.748 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:50:22.748 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:50:22.748 -07 000000593 INF: WaitCommand(30000) start
17-03-17 19:50:22.748 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:50:23.968 -07 000000486 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:50:23.968 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 19:50:23.998 -07 000000486 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:50:23.998 -07 000000486 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:50:24.128 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:50:24.168 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:26.488 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.014009,
17-03-17 19:50:26.508 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:26.538 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:26.728 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:26.958 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:26.988 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:26.988 -07 000000486 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:50:26.988 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:50:26.988 -07 000000486 INF: ===================  ===================
17-03-17 19:50:31.728 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:31.848 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.999021,
17-03-17 19:50:36.728 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:37.208 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.003063,
17-03-17 19:50:41.728 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:42.568 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.012614,
17-03-17 19:50:46.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:47.928 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.000345,
17-03-17 19:50:51.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:50:51.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=403, R2=425, Total=828. Warn if over 250 bubbles per interval.
17-03-17 19:50:52.758 -07 000000593 INF: WaitCommand(30000) end
17-03-17 19:50:52.758 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 22° ===================
17-03-17 19:50:52.758 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:50:52.758 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:50:52.758 -07 000000482 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:50:52.768 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:50:52.768 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:50:52.768 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-17 19:50:52.778 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:50:52.778 -07 000000610 INF: =================== Cycle #31, Flow Cell Temp 22° ===================
17-03-17 19:50:52.778 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:50:52.778 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:50:52.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:50:52.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:52.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:50:52.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:50:52.808 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:50:52.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:50:52.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:53.288 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.016692,
17-03-17 19:50:56.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:56.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:56.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:56.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:50:56.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:50:56.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:50:57.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:57.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:57.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:50:57.038 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:50:57.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:57.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:50:57.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:50:57.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:57.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:50:57.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:50:57.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:50:57.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:50:57.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:57.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:50:57.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:50:57.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:50:57.978 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:50:58.648 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.009895,
17-03-17 19:50:59.198 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:50:59.198 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:50:59.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:50:59.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:50:59.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:50:59.218 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:50:59.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:50:59.388 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:50:59.388 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:50:59.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:50:59.458 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:50:59.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:50:59.558 -07 000000610 INF: =================== Cycle #31, Pumping Reagent USM (2) ===================
17-03-17 19:50:59.558 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:50:59.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:50:59.588 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:50:59.588 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:50:59.588 -07 000000610 INF: =================== Cycle #31, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:50:59.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:50:59.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:51:01.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:01.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:51:01.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:01.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:01.678 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 19:51:01.678 -07 000000610 INF: =================== Cycle #31, Pumping Reagent USM (2) ===================
17-03-17 19:51:01.728 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:01.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:51:01.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:51:01.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:51:01.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:51:01.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:51:01.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:51:01.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:51:02.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:51:02.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:02.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:02.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:02.618 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:51:02.618 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:51:03.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:51:03.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:51:03.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:51:03.858 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:51:03.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:51:03.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:51:04.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:51:04.008 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.003063,
17-03-17 19:51:04.028 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:51:04.028 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:51:04.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:51:04.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:51:04.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:51:04.198 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:51:04.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:51:04.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:51:04.228 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:51:04.228 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:51:04.228 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:51:04.358 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:51:04.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:51:05.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:05.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:05.298 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:51:05.298 -07 000000610 INF: =================== Cycle #31, Pumping Reagent PR2 (3) ===================
17-03-17 19:51:05.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:51:05.458 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:51:05.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:51:05.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:51:05.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:51:05.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:51:05.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:51:05.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:51:05.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:06.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:06.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:06.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:51:06.238 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:51:06.238 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:51:06.238 -07 000000438 INF: WaitCommand(10000) start
17-03-17 19:51:06.238 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:51:06.728 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:07.458 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:51:07.458 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 19:51:07.488 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:51:07.488 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:51:07.618 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:51:07.658 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:51:09.188 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:09.218 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:51:09.368 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.011254,
17-03-17 19:51:09.638 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 19:51:09.668 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:51:09.668 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:51:09.668 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:51:09.668 -07 000000618 INF: ===================  ===================
17-03-17 19:51:11.728 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:14.728 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.98264,
17-03-17 19:51:16.248 -07 000000438 INF: WaitCommand(10000) end
17-03-17 19:51:16.248 -07 000000610 INF: =================== Cycle #31, Imaging ===================
17-03-17 19:51:16.248 -07 000000610 INF: Imaging Cycle 31: ScanTilesCommand Cycle 31 time start.
17-03-17 19:51:16.248 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:51:16.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:51:16.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:51:16.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:51:16.278 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:51:16.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:51:16.598 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:51:16.598 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:51:16.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:51:16.668 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:51:16.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:16.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:16.668 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:51:16.668 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:16.668 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:51:16.678 -07 000000561 INF: FPGA: Recv EXLED1ON 
17-03-17 19:51:16.678 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:51:16.678 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:51:16.678 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23210
17-03-17 19:51:16.688 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:16.688 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23210 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.2 mW
17-03-17 19:51:16.688 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:51:16.688 -07 000000541 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:51:16.698 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:16.698 -07 000000438 INF: RedLED: LED was on for 18 ms
17-03-17 19:51:16.698 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 19:51:16.698 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:51:16.698 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:16.698 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:51:16.698 -07 000000478 INF: FPGA: Recv EXLED2ON 
17-03-17 19:51:16.708 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:16.708 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:51:16.708 -07 000000561 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 19:51:16.718 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:16.718 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 19:51:16.718 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:51:16.718 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:51:16.728 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:16.728 -07 000000438 INF: GreenLED: LED was on for 20 ms
17-03-17 19:51:16.728 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:51:16.728 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:16.728 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:51:16.728 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 19:51:16.738 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:16.738 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:51:17.238 -07 000000478 INF: FPGA: Recv EMOUT
17-03-17 19:51:17.238 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:51:17.238 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:51:17.238 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 19:51:17.248 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:17.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:51:17.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127666226489168. ------
17-03-17 19:51:17.248 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:17.248 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17941 mm
17-03-17 19:51:17.248 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:17.248 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:17.258 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:17.258 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:51:17.258 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39193, sync = True, waitForSettling = False)
17-03-17 19:51:17.258 -07 000000431 INF: Z Motor: Moving to -0.179414 mm, started at -0.127666 mm, distance = -51.75 um
17-03-17 19:51:17.258 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:51:17.258 -07 000000541 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 19:51:17.268 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:17.268 -07 000000501 INF: FPGA: Recv YRDPOS 154380
17-03-17 19:51:17.278 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:51:17.278 -07 000000541 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:17.278 -07 000000431 INF: FPGA: Xmit ZDACW 39193\n [Z Motor]
17-03-17 19:51:17.278 -07 000000541 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:51:17.278 -07 000000541 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:51:17.278 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:51:17.288 -07 000000431 INF: FPGA: 'ZDACW 39193' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:51:17.288 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:17.288 -07 000000424 INF: FPGA: Recv ZDACR 39193
17-03-17 19:51:17.298 -07 000000541 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:51:17.298 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:17.298 -07 000000431 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:51:17.458 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:51:17.458 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:51:18.978 -07 000000462 INF: FPGA: Recv YMVTO 122702 24776
17-03-17 19:51:18.978 -07 000000541 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 19:51:18.978 -07 000000541 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 19:51:18.978 -07 000000541 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 19:51:18.978 -07 000000541 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 19:51:20.088 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.011254,
17-03-17 19:51:21.728 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:21.828 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:21.828 -07 000000478 INF: FPGA: Recv YRDPOS 122696
17-03-17 19:51:21.838 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:21.838 -07 000000541 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:21.858 -07 000000541 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:21.858 -07 000000541 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 19:51:21.858 -07 000000541 INF: Y Motor: Moved to 59.9102 after 4601 ms
17-03-17 19:51:21.858 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179414 mm (DAC = 39193)
17-03-17 19:51:21.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.858 -07 000000424 INF: FPGA: Recv ZSGSRD 37222
17-03-17 19:51:21.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:21.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.868 -07 000000429 INF: FPGA: Recv ZSGSRD 37220
17-03-17 19:51:21.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.878 -07 000000541 INF: FPGA: Recv ZSGSRD 37212
17-03-17 19:51:21.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.888 -07 000000429 INF: FPGA: Recv ZSGSRD 37221
17-03-17 19:51:21.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.898 -07 000000429 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:51:21.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.908 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.908 -07 000000541 INF: FPGA: Recv ZSGSRD 37224
17-03-17 19:51:21.918 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.918 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.918 -07 000000429 INF: FPGA: Recv ZSGSRD 37216
17-03-17 19:51:21.928 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.928 -07 000000429 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:51:21.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.938 -07 000000501 INF: FPGA: Recv ZSGSRD 37215
17-03-17 19:51:21.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:21.948 -07 000000501 INF: FPGA: Recv ZSGSRD 37214
17-03-17 19:51:21.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.958 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:21.958 -07 000000429 INF: FPGA: Recv ZPIEZORD 33684
17-03-17 19:51:21.968 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.980 V. Piezo Error = -7.8 V.
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37218 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37217 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37212 (-178.5 uncal um), Max = 37224 (-178.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37218, posNoise = 6, negNoise = 6
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: After move to -0.179414, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: Settle wait time = 4604 ms, measure time = 106 ms (allowed 150 ms), total time = 4710 ms
17-03-17 19:51:21.968 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:22.018 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 19:51:22.018 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:22.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:22.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:22.018 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:22.018 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:22.018 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:51:22.018 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:22.018 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:22.018 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:51:22.048 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:51:22.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:51:22.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:51:22.048 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:51:22.068 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:51:22.068 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 45 ms.
17-03-17 19:51:22.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:51:22.108 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:51:22.308 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:51:22.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:51:22.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:51:22.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:51:22.348 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:51:22.348 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:51:22.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:51:22.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:51:22.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:22.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:51:22.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:51:22.548 -07 000000541 INF: Image SNR check: start
17-03-17 19:51:22.548 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:22.548 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:22.558 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:22.558 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:51:22.558 -07 000000541 INF: Image SNR check: pass  [peak (Max-Min)=67.09]
17-03-17 19:51:22.558 -07 000000541 INF: Autofocus start
17-03-17 19:51:22.558 -07 000000541 INF: MeasureProfile start
17-03-17 19:51:22.578 -07 000000541 INF: MeasureProfile done
17-03-17 19:51:22.578 -07 000000541 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:51:22.578 -07 000000541 INF: Autofocus finished
17-03-17 19:51:22.758 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:51:22.758 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:51:22.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179419679503194. ----------
17-03-17 19:51:22.758 -07 000000610 INF: Cycle	31	Tile	1	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:22.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37744, sync = True, waitForSettling = True)
17-03-17 19:51:22.768 -07 000000610 INF: Z Motor: Moving to -0.172781 mm, started at -0.179420 mm, distance = 6.64 um
17-03-17 19:51:22.768 -07 000000610 INF: FPGA: Xmit ZDACW 37744\n [Z Motor]
17-03-17 19:51:22.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:51:22.778 -07 000000610 INF: FPGA: 'ZDACW 37744' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:22.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:22.778 -07 000000541 INF: FPGA: Recv ZDACR 37744
17-03-17 19:51:22.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.938 -07 000000541 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:51:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.948 -07 000000541 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:51:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.958 -07 000000541 INF: FPGA: Recv ZSGSRD 36188
17-03-17 19:51:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.968 -07 000000541 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:51:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:51:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.988 -07 000000431 INF: FPGA: Recv ZSGSRD 36184
17-03-17 19:51:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:22.998 -07 000000431 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:51:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:23.008 -07 000000431 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:51:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:23.018 -07 000000478 INF: FPGA: Recv ZSGSRD 36183
17-03-17 19:51:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:23.028 -07 000000478 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:51:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:23.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:23.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 32282
17-03-17 19:51:23.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:23.048 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.6 V.
17-03-17 19:51:23.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36186 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36186 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36183 (-171.9 uncal um), Max = 36191 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:51:23.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36186, posNoise = 5, negNoise = 3
17-03-17 19:51:23.048 -07 000000610 INF: Z Motor: After move to -0.172781, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:23.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:51:23.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:23.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:23.048 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:23.048 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:23.048 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:23.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:23.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:23.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:23.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:23.048 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:23.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:23.048 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:51:23.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:23.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:23.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:51:23.068 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:51:23.078 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:51:23.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:23.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:23.078 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:23.088 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:51:23.088 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 19:51:23.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37920 150\n [Camera]
17-03-17 19:51:23.288 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:23.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:23.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:23.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:23.698 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:23.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 19:51:23.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:23.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:23.698 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:23.818 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:23.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:51:23.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37920 791
17-03-17 19:51:24.048 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:24.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:51:24.098 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:51:24.098 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:24.098 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:51:24.098 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:51:24.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:51:24.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:51:24.208 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:24.208 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:51:24.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 19:51:24.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:24.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:24.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:24.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:24.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:24.238 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:24.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:24.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:51:24.248 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:24.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:51:24.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:24.428 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:24.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37920 150' command took 2 ms to send, 1325 ms to get response, and 1336 ms overall
17-03-17 19:51:24.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:51:24.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172789892572897. ------
17-03-17 19:51:24.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:24.438 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17919 mm
17-03-17 19:51:24.438 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:24.438 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:24.438 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:51:24.438 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39143, sync = True, waitForSettling = False)
17-03-17 19:51:24.438 -07 000000431 INF: Z Motor: Moving to -0.179185 mm, started at -0.172790 mm, distance = -6.40 um
17-03-17 19:51:24.438 -07 000000541 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 19:51:24.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:51:24.448 -07 000000431 INF: FPGA: Xmit ZDACW 39143\n [Z Motor]
17-03-17 19:51:24.448 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:51:24.458 -07 000000431 INF: FPGA: 'ZDACW 39143' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:51:24.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:24.458 -07 000000501 INF: FPGA: Recv YRDPOS 122696
17-03-17 19:51:24.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:51:24.468 -07 000000541 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:24.468 -07 000000541 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:24.468 -07 000000541 INF: Y Motor: Moving 1332 steps1
17-03-17 19:51:24.468 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:51:24.478 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:24.478 -07 000000618 INF: FPGA: Recv ZDACR 39143
17-03-17 19:51:24.488 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:51:24.488 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:24.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:51:24.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:51:24.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:51:24.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:24.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:51:24.648 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:51:24.648 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:24.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:24.648 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:51:24.648 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:24.658 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:51:24.668 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:51:24.668 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:51:24.858 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:51:24.858 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:51:24.888 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:24.888 -07 000000618 INF: FPGA: Recv YRDPOS 124380
17-03-17 19:51:24.898 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:24.898 -07 000000541 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:24.898 -07 000000541 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:51:24.898 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 19:51:25.448 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.997626,
17-03-17 19:51:25.848 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:25.848 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-17 19:51:25.858 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:25.858 -07 000000541 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:25.878 -07 000000541 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:25.878 -07 000000541 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:25.878 -07 000000541 INF: Y Motor: Moved to 60.7324 after 1434 ms (table move)
17-03-17 19:51:25.878 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179185 mm (DAC = 39143)
17-03-17 19:51:25.878 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.878 -07 000000478 INF: FPGA: Recv ZSGSRD 37189
17-03-17 19:51:25.888 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:25.888 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.888 -07 000000424 INF: FPGA: Recv ZSGSRD 37178
17-03-17 19:51:25.898 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.898 -07 000000431 INF: FPGA: Recv ZSGSRD 37180
17-03-17 19:51:25.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.908 -07 000000618 INF: FPGA: Recv ZSGSRD 37186
17-03-17 19:51:25.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.918 -07 000000478 INF: FPGA: Recv ZSGSRD 37192
17-03-17 19:51:25.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.928 -07 000000429 INF: FPGA: Recv ZSGSRD 37191
17-03-17 19:51:25.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.938 -07 000000431 INF: FPGA: Recv ZSGSRD 37182
17-03-17 19:51:25.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.948 -07 000000424 INF: FPGA: Recv ZSGSRD 37178
17-03-17 19:51:25.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.958 -07 000000431 INF: FPGA: Recv ZSGSRD 37182
17-03-17 19:51:25.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:25.968 -07 000000618 INF: FPGA: Recv ZSGSRD 37180
17-03-17 19:51:25.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.978 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:25.978 -07 000000569 INF: FPGA: Recv ZPIEZORD 33624
17-03-17 19:51:25.988 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.973 V. Piezo Error = -7.9 V.
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37184 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37182 (-178.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37178 (-178.3 uncal um), Max = 37192 (-178.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37184, posNoise = 8, negNoise = 6
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: After move to -0.179185, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:51:25.988 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:26.038 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:51:26.038 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:26.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:26.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:26.038 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:26.038 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:26.038 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:51:26.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:26.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:26.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:51:26.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:26.048 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:51:26.058 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:51:26.058 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:51:26.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:51:26.108 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:51:26.308 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:51:26.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:51:26.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:51:26.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1124699408, 0x0, 559484976) start.
17-03-17 19:51:26.348 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:51:26.348 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:51:26.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 19:51:26.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1124699408, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:51:26.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:26.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:51:26.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:51:26.448 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:26.448 -07 000000431 INF: Autofocus start
17-03-17 19:51:26.448 -07 000000431 INF: MeasureProfile start
17-03-17 19:51:26.448 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:26.458 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:26.458 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:51:26.458 -07 000000431 INF: MeasureProfile done
17-03-17 19:51:26.458 -07 000000431 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:51:26.458 -07 000000431 INF: Autofocus finished
17-03-17 19:51:26.658 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:51:26.658 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:51:26.658 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179201256290374. ----------
17-03-17 19:51:26.658 -07 000000610 INF: Cycle	31	Tile	2	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:26.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37623, sync = True, waitForSettling = True)
17-03-17 19:51:26.668 -07 000000610 INF: Z Motor: Moving to -0.172227 mm, started at -0.179201 mm, distance = 6.97 um
17-03-17 19:51:26.668 -07 000000610 INF: FPGA: Xmit ZDACW 37623\n [Z Motor]
17-03-17 19:51:26.668 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:51:26.678 -07 000000610 INF: FPGA: 'ZDACW 37623' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:26.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:26.678 -07 000000424 INF: FPGA: Recv ZDACR 37623
17-03-17 19:51:26.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:26.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:51:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.848 -07 000000541 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:51:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36096
17-03-17 19:51:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.868 -07 000000618 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:51:26.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.878 -07 000000478 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:51:26.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.888 -07 000000569 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:51:26.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.898 -07 000000424 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:51:26.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:51:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.918 -07 000000541 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:51:26.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:26.928 -07 000000424 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:51:26.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:26.938 -07 000000618 INF: FPGA: Recv ZPIEZORD 32179
17-03-17 19:51:26.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:26.948 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.7 V.
17-03-17 19:51:26.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36100 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36102 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36092 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:51:26.948 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36100, posNoise = 6, negNoise = 8
17-03-17 19:51:26.948 -07 000000610 INF: Z Motor: After move to -0.172227, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:26.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:51:26.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:26.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:26.948 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:26.948 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:26.948 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:26.948 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:26.948 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:26.948 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:26.948 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:26.948 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:26.948 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:26.948 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:26.958 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:26.958 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:26.958 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:51:26.958 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:26.968 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:51:26.968 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:51:26.968 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:51:26.968 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:51:26.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37800 150\n [Camera]
17-03-17 19:51:27.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:27.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:27.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:27.578 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:27.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:27.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:27.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:27.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:51:27.578 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:27.578 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:27.578 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 19:51:27.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37800 791
17-03-17 19:51:27.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 19:51:27.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:51:27.988 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:51:27.988 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:27.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:51:27.988 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:51:27.988 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:27.988 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:27.988 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:27.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:51:27.998 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:51:28.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:28.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:28.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:28.228 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:28.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:28.228 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:28.238 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:28.238 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:51:28.238 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:28.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:51:28.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:51:28.308 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:28.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37800 150' command took 2 ms to send, 1325 ms to get response, and 1336 ms overall
17-03-17 19:51:28.308 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172808
17-03-17 19:51:28.308 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17281 mm
17-03-17 19:51:28.308 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:28.318 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:51:28.318 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 19:51:28.318 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37750, sync = True, waitForSettling = False)
17-03-17 19:51:28.318 -07 000000569 INF: Z Motor: Moving to -0.172808 mm, started at -0.172237 mm, distance = -0.57 um
17-03-17 19:51:28.318 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:28.318 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:51:28.328 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:28.328 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:28.328 -07 000000569 INF: FPGA: Xmit ZDACW 37750\n [Z Motor]
17-03-17 19:51:28.328 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:28.328 -07 000000478 INF: Y Motor: Moving 1344 steps-21
17-03-17 19:51:28.328 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:51:28.338 -07 000000569 INF: FPGA: 'ZDACW 37750' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:28.338 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:28.348 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:28.348 -07 000000424 INF: FPGA: Recv ZDACR 37750
17-03-17 19:51:28.358 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:28.358 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:51:28.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:51:28.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:51:28.628 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:28.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:51:28.628 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:51:28.628 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:28.638 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:28.638 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:28.638 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 19:51:28.638 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:51:28.708 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:51:28.708 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:51:28.748 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:28.748 -07 000000424 INF: FPGA: Recv YRDPOS 126082
17-03-17 19:51:28.758 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:28.758 -07 000000478 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:28.758 -07 000000478 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:51:28.758 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-17 19:51:29.708 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:29.708 -07 000000431 INF: FPGA: Recv YRDPOS 126082
17-03-17 19:51:29.718 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:29.718 -07 000000478 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:29.738 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:29.738 -07 000000478 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:29.738 -07 000000478 INF: Y Motor: Moved to 61.5635 after 1421 ms (table move)
17-03-17 19:51:29.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172808 mm (DAC = 37750)
17-03-17 19:51:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36188
17-03-17 19:51:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:51:29.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:51:29.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.758 -07 000000462 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:51:29.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.768 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:51:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.778 -07 000000569 INF: FPGA: Recv ZSGSRD 36194
17-03-17 19:51:29.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36196
17-03-17 19:51:29.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.798 -07 000000541 INF: FPGA: Recv ZSGSRD 36199
17-03-17 19:51:29.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.808 -07 000000541 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:51:29.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.818 -07 000000569 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:51:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:29.828 -07 000000593 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:51:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:29.838 -07 000000462 INF: FPGA: Recv ZPIEZORD 32325
17-03-17 19:51:29.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36190 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36188 (-171.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36185 (-171.9 uncal um), Max = 36199 (-172.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36190, posNoise = 9, negNoise = 5
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: After move to -0.172808, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:51:29.848 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:29.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 19:51:29.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:29.898 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.172815589421464. ----------
17-03-17 19:51:29.898 -07 000000610 INF: Cycle	31	Tile	3	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:29.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37573, sync = True, waitForSettling = True)
17-03-17 19:51:29.898 -07 000000610 INF: Z Motor: Moving to -0.171998 mm, started at -0.172816 mm, distance = 0.82 um
17-03-17 19:51:29.898 -07 000000610 INF: FPGA: Xmit ZDACW 37573\n [Z Motor]
17-03-17 19:51:29.898 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:51:29.908 -07 000000610 INF: FPGA: 'ZDACW 37573' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:29.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:29.908 -07 000000438 INF: FPGA: Recv ZDACR 37573
17-03-17 19:51:29.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:29.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:30.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.068 -07 000000569 INF: FPGA: Recv ZSGSRD 36069
17-03-17 19:51:30.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.078 -07 000000618 INF: FPGA: Recv ZSGSRD 36064
17-03-17 19:51:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.088 -07 000000618 INF: FPGA: Recv ZSGSRD 36060
17-03-17 19:51:30.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.098 -07 000000569 INF: FPGA: Recv ZSGSRD 36070
17-03-17 19:51:30.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36065
17-03-17 19:51:30.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.118 -07 000000618 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:51:30.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:51:30.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36065
17-03-17 19:51:30.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36067
17-03-17 19:51:30.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:30.158 -07 000000593 INF: FPGA: Recv ZSGSRD 36060
17-03-17 19:51:30.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:30.168 -07 000000462 INF: FPGA: Recv ZPIEZORD 32123
17-03-17 19:51:30.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:30.178 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.7 V.
17-03-17 19:51:30.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36065 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36065 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36060 (-171.1 uncal um), Max = 36070 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:51:30.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36065, posNoise = 5, negNoise = 5
17-03-17 19:51:30.178 -07 000000610 INF: Z Motor: After move to -0.171998, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:30.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:51:30.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:30.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:30.178 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:30.178 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:30.178 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:30.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:30.178 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:30.178 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:30.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:51:30.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:30.178 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:30.178 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:30.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:51:30.188 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:30.188 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:30.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:30.198 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:51:30.198 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:51:30.198 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:51:30.198 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:51:30.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37750 150\n [Camera]
17-03-17 19:51:30.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:30.808 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.978563,
17-03-17 19:51:30.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:30.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:30.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:30.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:30.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:30.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:30.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:51:30.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:30.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:30.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:51:30.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37750 791
17-03-17 19:51:31.148 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:31.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:51:31.308 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:51:31.308 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:31.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:51:31.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:51:31.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:31.308 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:31.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 19:51:31.308 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:31.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:51:31.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1137
17-03-17 19:51:31.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1137
17-03-17 19:51:31.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:31.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1137
17-03-17 19:51:31.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1137
17-03-17 19:51:31.348 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:31.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:31.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:51:31.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:31.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:51:31.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:51:31.538 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:31.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37750 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-17 19:51:31.538 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172011
17-03-17 19:51:31.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17201 mm
17-03-17 19:51:31.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:31.538 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:51:31.538 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 19:51:31.538 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37576, sync = True, waitForSettling = False)
17-03-17 19:51:31.548 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:31.548 -07 000000593 INF: FPGA: Recv YRDPOS 126082
17-03-17 19:51:31.558 -07 000000438 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:31.558 -07 000000438 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:31.558 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:31.558 -07 000000438 INF: Y Motor: Moving 1343 steps-19
17-03-17 19:51:31.558 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:31.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:31.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:51:31.728 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:51:31.728 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:31.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:51:31.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:51:31.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:31.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:31.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:51:31.738 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:31.748 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:51:31.928 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:51:31.928 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:51:31.968 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:31.968 -07 000000482 INF: FPGA: Recv YRDPOS 127784
17-03-17 19:51:31.978 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:31.978 -07 000000438 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:31.978 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:51:31.978 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-17 19:51:32.928 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:32.928 -07 000000429 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:51:32.938 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:32.938 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:32.958 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:32.958 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:51:32.958 -07 000000438 INF: Y Motor: Moved to 62.3950 after 1411 ms (table move)
17-03-17 19:51:32.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172012 mm (DAC = 37576)
17-03-17 19:51:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:32.958 -07 000000478 INF: FPGA: Recv ZSGSRD 36192
17-03-17 19:51:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:32.968 -07 000000438 INF: FPGA: Recv ZSGSRD 36192
17-03-17 19:51:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:32.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:32.978 -07 000000593 INF: FPGA: Recv ZSGSRD 36192
17-03-17 19:51:32.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:32.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:32.988 -07 000000593 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:51:32.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:32.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:32.998 -07 000000482 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:51:33.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.008 -07 000000482 INF: FPGA: Recv ZSGSRD 36189
17-03-17 19:51:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.018 -07 000000593 INF: FPGA: Recv ZSGSRD 36190
17-03-17 19:51:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.028 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:51:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.038 -07 000000462 INF: FPGA: Recv ZSGSRD 36189
17-03-17 19:51:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:51:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:33.058 -07 000000593 INF: FPGA: Recv ZPIEZORD 32315
17-03-17 19:51:33.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.3 V.
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36190 (-171.9 uncal um), Error = 0.1 uncal um, Median = 36191 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36186 (-171.9 uncal um), Max = 36193 (-172.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36190, posNoise = 3, negNoise = 4
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: After move to -0.172012, error = -0.000804, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: Settle wait time = 3057 ms, measure time = 107 ms (allowed 150 ms), total time = 3164 ms
17-03-17 19:51:33.068 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:33.118 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 19:51:33.118 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:33.118 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.172815589421464. ----------
17-03-17 19:51:33.118 -07 000000610 INF: Cycle	31	Tile	4	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:33.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37399, sync = True, waitForSettling = True)
17-03-17 19:51:33.118 -07 000000610 INF: Z Motor: Moving to -0.171202 mm, started at -0.172816 mm, distance = 1.61 um
17-03-17 19:51:33.118 -07 000000610 INF: FPGA: Xmit ZDACW 37399\n [Z Motor]
17-03-17 19:51:33.118 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:51:33.128 -07 000000610 INF: FPGA: 'ZDACW 37399' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:33.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:33.128 -07 000000618 INF: FPGA: Recv ZDACR 37399
17-03-17 19:51:33.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.288 -07 000000618 INF: FPGA: Recv ZSGSRD 35936
17-03-17 19:51:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35943
17-03-17 19:51:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.308 -07 000000618 INF: FPGA: Recv ZSGSRD 35944
17-03-17 19:51:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.318 -07 000000618 INF: FPGA: Recv ZSGSRD 35936
17-03-17 19:51:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.328 -07 000000541 INF: FPGA: Recv ZSGSRD 35941
17-03-17 19:51:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35937
17-03-17 19:51:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35944
17-03-17 19:51:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.358 -07 000000541 INF: FPGA: Recv ZSGSRD 35944
17-03-17 19:51:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35934
17-03-17 19:51:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:33.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:51:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:33.388 -07 000000541 INF: FPGA: Recv ZPIEZORD 31970
17-03-17 19:51:33.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:33.398 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.8 V.
17-03-17 19:51:33.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35940 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35944 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:33.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35940, posNoise = 4, negNoise = 6
17-03-17 19:51:33.398 -07 000000610 INF: Z Motor: After move to -0.171202, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:33.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:51:33.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:33.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:33.398 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:33.398 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:33.398 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:33.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:33.398 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:33.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:33.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:33.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:33.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:33.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:33.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:33.408 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:33.408 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:33.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:33.418 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:51:33.418 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:51:33.418 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:51:33.418 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:51:33.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37576 150\n [Camera]
17-03-17 19:51:33.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 19:51:34.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:34.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:34.028 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:34.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:34.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:51:34.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:34.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:34.028 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:34.028 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:34.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:51:34.228 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 791
17-03-17 19:51:34.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:34.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:51:34.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:51:34.428 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:34.428 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:51:34.428 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:51:34.428 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:34.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:34.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:51:34.438 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:34.448 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:51:34.568 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:34.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:34.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:34.568 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:34.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:51:34.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:34.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:34.568 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:34.568 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:34.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:51:34.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:34.758 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:34.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37576 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:51:34.758 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171541
17-03-17 19:51:34.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17154 mm
17-03-17 19:51:34.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:34.768 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37473, sync = True, waitForSettling = False)
17-03-17 19:51:34.768 -07 000000462 INF: Z Motor: Moving to -0.171540 mm, started at -0.171210 mm, distance = -0.33 um
17-03-17 19:51:34.768 -07 000000462 INF: FPGA: Xmit ZDACW 37473\n [Z Motor]
17-03-17 19:51:34.768 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:51:34.768 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 19:51:34.768 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:51:34.778 -07 000000462 INF: FPGA: 'ZDACW 37473' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:51:34.778 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:34.778 -07 000000482 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:51:34.788 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:51:34.788 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:34.788 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:34.788 -07 000000438 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:51:34.788 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:34.788 -07 000000482 INF: FPGA: Recv ZDACR 37473
17-03-17 19:51:34.798 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:34.798 -07 000000462 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:51:34.798 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:34.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:51:34.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:51:34.948 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:34.948 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:34.948 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:51:34.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:51:34.958 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:51:34.958 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:34.968 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:34.968 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:51:35.168 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:51:35.168 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 19:51:35.208 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:35.208 -07 000000382 INF: FPGA: Recv YRDPOS 129481
17-03-17 19:51:35.218 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:51:35.218 -07 000000438 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:35.218 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:51:35.218 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 19:51:36.168 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:36.168 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-17 19:51:36.178 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:36.178 -07 000000438 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:36.198 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:36.198 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:51:36.198 -07 000000438 INF: Y Motor: Moved to 63.2236 after 1430 ms (table move)
17-03-17 19:51:36.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171540 mm (DAC = 37473)
17-03-17 19:51:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.198 -07 000000482 INF: FPGA: Recv ZSGSRD 35989
17-03-17 19:51:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35994
17-03-17 19:51:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.218 -07 000000482 INF: FPGA: Recv ZSGSRD 35999
17-03-17 19:51:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35996
17-03-17 19:51:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.238 -07 000000462 INF: FPGA: Recv ZSGSRD 35996
17-03-17 19:51:36.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35997
17-03-17 19:51:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35995
17-03-17 19:51:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.278 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.99219,
17-03-17 19:51:36.278 -07 000000569 INF: FPGA: Recv ZSGSRD 35990
17-03-17 19:51:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35997
17-03-17 19:51:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:51:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.328 -07 000000382 INF: FPGA: Recv ZSGSRD 35993
17-03-17 19:51:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:36.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:36.338 -07 000000569 INF: FPGA: Recv ZPIEZORD 32073
17-03-17 19:51:36.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.7 V.
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35995 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35996 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35989 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35995, posNoise = 4, negNoise = 6
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: After move to -0.171540, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 145 ms (allowed 150 ms), total time = 1578 ms
17-03-17 19:51:36.348 -07 000000610 INF: Z Motor: Waiting extra 5 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:36.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:51:36.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:36.358 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171562868053821. ----------
17-03-17 19:51:36.358 -07 000000610 INF: Cycle	31	Tile	5	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:36.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37296, sync = True, waitForSettling = True)
17-03-17 19:51:36.358 -07 000000610 INF: Z Motor: Moving to -0.170730 mm, started at -0.171563 mm, distance = 0.83 um
17-03-17 19:51:36.358 -07 000000610 INF: FPGA: Xmit ZDACW 37296\n [Z Motor]
17-03-17 19:51:36.358 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:51:36.368 -07 000000610 INF: FPGA: 'ZDACW 37296' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:36.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:36.368 -07 000000569 INF: FPGA: Recv ZDACR 37296
17-03-17 19:51:36.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.528 -07 000000382 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:51:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.538 -07 000000462 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:51:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35867
17-03-17 19:51:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.558 -07 000000462 INF: FPGA: Recv ZSGSRD 35864
17-03-17 19:51:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:51:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.578 -07 000000569 INF: FPGA: Recv ZSGSRD 35870
17-03-17 19:51:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:51:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.598 -07 000000438 INF: FPGA: Recv ZSGSRD 35856
17-03-17 19:51:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.608 -07 000000569 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:51:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:36.618 -07 000000482 INF: FPGA: Recv ZSGSRD 35870
17-03-17 19:51:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:36.628 -07 000000382 INF: FPGA: Recv ZPIEZORD 31872
17-03-17 19:51:36.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:36.638 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 19:51:36.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35868 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35856 (-169.8 uncal um), Max = 35873 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:51:36.638 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 6, negNoise = 11
17-03-17 19:51:36.638 -07 000000610 INF: Z Motor: After move to -0.170730, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:36.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:51:36.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:36.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:36.638 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:36.638 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:36.638 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:36.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:36.638 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:36.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:36.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:36.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:36.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:36.638 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:36.648 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:36.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:36.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:36.648 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:36.658 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:51:36.658 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:51:36.658 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:51:36.658 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:51:36.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37473 150\n [Camera]
17-03-17 19:51:36.728 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:36.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:37.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:37.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:37.268 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:37.268 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:37.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:51:37.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:37.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:37.268 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:37.268 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:37.268 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:51:37.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37473 791
17-03-17 19:51:37.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:37.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:51:37.658 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:51:37.658 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:37.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:51:37.668 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:51:37.668 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:37.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:37.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:51:37.668 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:51:37.678 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:51:37.808 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:37.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:37.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:37.808 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:37.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:51:37.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:37.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:37.808 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:37.808 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:37.808 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:51:37.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:37.998 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:37.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37473 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:51:37.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:51:37.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170740568899675. ------
17-03-17 19:51:37.998 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:38.008 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17717 mm
17-03-17 19:51:38.008 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:38.008 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:38.008 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38703, sync = True, waitForSettling = False)
17-03-17 19:51:38.008 -07 000000424 INF: Z Motor: Moving to -0.177171 mm, started at -0.170741 mm, distance = -6.43 um
17-03-17 19:51:38.008 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:51:38.008 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 19:51:38.018 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:38.018 -07 000000424 INF: FPGA: Xmit ZDACW 38703\n [Z Motor]
17-03-17 19:51:38.028 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:38.038 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:51:38.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:51:38.188 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:51:38.188 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:38.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:51:38.188 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:51:38.188 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:38.188 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:51:38.188 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:51:38.198 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:51:38.198 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:51:38.208 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:51:38.208 -07 000000561 INF: FPGA: Recv YRDPOS 129482
17-03-17 19:51:38.208 -07 000000424 INF: FPGA: 'ZDACW 38703' command took 0 ms to send, 187 ms to get response, and 201 ms overall
17-03-17 19:51:38.208 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:38.208 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 177 ms to get response, and 201 ms overall
17-03-17 19:51:38.208 -07 000000569 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:38.208 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:38.208 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:51:38.208 -07 000000561 INF: FPGA: Recv ZDACR 38703
17-03-17 19:51:38.218 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:51:38.218 -07 000000424 INF: Z Motor: MoveAbsStepped took 204 ms (did NOT wait for settling yet))
17-03-17 19:51:38.218 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:38.238 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:51:38.238 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:51:38.588 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:51:38.588 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 19:51:38.628 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:38.628 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-17 19:51:38.638 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:38.638 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:38.638 -07 000000569 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 19:51:38.638 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.839 mm, average velocity = 2.208 mm/sec
17-03-17 19:51:39.588 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:39.588 -07 000000424 INF: FPGA: Recv YRDPOS 131187
17-03-17 19:51:39.598 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:39.598 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:39.618 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:39.618 -07 000000569 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:39.618 -07 000000569 INF: Y Motor: Moved to 64.0562 after 1606 ms (table move)
17-03-17 19:51:39.618 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177171 mm (DAC = 38703)
17-03-17 19:51:39.618 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36871
17-03-17 19:51:39.628 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:51:39.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:51:39.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:51:39.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.638 -07 000000561 INF: FPGA: Recv ZSGSRD 36878
17-03-17 19:51:39.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.648 -07 000000424 INF: FPGA: Recv ZSGSRD 36869
17-03-17 19:51:39.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.658 -07 000000501 INF: FPGA: Recv ZSGSRD 36871
17-03-17 19:51:39.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.668 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.668 -07 000000569 INF: FPGA: Recv ZSGSRD 36866
17-03-17 19:51:39.678 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.678 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36864
17-03-17 19:51:39.688 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.688 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.688 -07 000000561 INF: FPGA: Recv ZSGSRD 36859
17-03-17 19:51:39.698 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36869
17-03-17 19:51:39.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:39.708 -07 000000561 INF: FPGA: Recv ZSGSRD 36869
17-03-17 19:51:39.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.718 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:39.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 33223
17-03-17 19:51:39.728 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.1 V.
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36868 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36869 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36859 (-176.2 uncal um), Max = 36878 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36868, posNoise = 10, negNoise = 9
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: After move to -0.177171, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: Settle wait time = 1610 ms, measure time = 105 ms (allowed 150 ms), total time = 1715 ms
17-03-17 19:51:39.728 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:39.778 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1770 ms
17-03-17 19:51:39.778 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:39.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:39.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:39.778 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:39.778 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:39.788 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:51:39.788 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:39.788 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:39.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:51:39.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:39.788 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:51:39.798 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:51:39.798 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:51:39.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:51:39.848 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:51:40.048 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:51:40.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:51:40.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:51:40.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:51:40.088 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:51:40.088 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:51:40.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:51:40.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:51:40.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:40.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:51:40.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:51:40.288 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:40.288 -07 000000501 INF: Autofocus start
17-03-17 19:51:40.288 -07 000000501 INF: MeasureProfile start
17-03-17 19:51:40.288 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:40.298 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:40.298 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:51:40.298 -07 000000501 INF: MeasureProfile done
17-03-17 19:51:40.298 -07 000000501 INF: X=64  Z correction [um]=0.2557664
17-03-17 19:51:40.298 -07 000000501 INF: Autofocus finished
17-03-17 19:51:40.498 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:51:40.498 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:51:40.498 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177171205253578. ----------
17-03-17 19:51:40.498 -07 000000610 INF: Cycle	31	Tile	6	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:40.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 19:51:40.508 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.177171 mm, distance = 6.55 um
17-03-17 19:51:40.508 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 19:51:40.508 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:51:40.518 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:51:40.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:40.518 -07 000000569 INF: FPGA: Recv ZDACR 37272
17-03-17 19:51:40.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:40.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.678 -07 000000569 INF: FPGA: Recv ZSGSRD 35850
17-03-17 19:51:40.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.688 -07 000000438 INF: FPGA: Recv ZSGSRD 35850
17-03-17 19:51:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.698 -07 000000438 INF: FPGA: Recv ZSGSRD 35848
17-03-17 19:51:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.708 -07 000000438 INF: FPGA: Recv ZSGSRD 35853
17-03-17 19:51:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.718 -07 000000569 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:51:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35851
17-03-17 19:51:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.738 -07 000000569 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:51:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.748 -07 000000438 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:51:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:51:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:40.768 -07 000000569 INF: FPGA: Recv ZSGSRD 35852
17-03-17 19:51:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:40.778 -07 000000438 INF: FPGA: Recv ZPIEZORD 31891
17-03-17 19:51:40.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:40.788 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.7 V.
17-03-17 19:51:40.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35850 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35847 (-169.7 uncal um), Max = 35853 (-169.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:51:40.788 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35850, posNoise = 3, negNoise = 3
17-03-17 19:51:40.788 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:40.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:51:40.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:40.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:40.788 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:40.788 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:40.788 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:40.788 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:40.788 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:40.788 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:40.788 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:40.788 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:40.788 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:51:40.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:40.798 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:40.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:40.798 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:40.798 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:40.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:51:40.798 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:51:40.808 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:51:40.808 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:51:40.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37448 150\n [Camera]
17-03-17 19:51:41.008 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:41.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:41.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:41.418 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:41.418 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:41.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:51:41.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:41.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:41.418 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:41.418 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:41.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:51:41.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37448 791
17-03-17 19:51:41.678 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.974486,
17-03-17 19:51:41.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:41.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:41.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:51:41.788 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:51:41.788 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:41.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:41.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:51:41.798 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:51:41.798 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:41.798 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:51:41.808 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:41.808 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:51:41.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:41.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:41.948 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:41.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:41.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:51:41.958 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:41.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:41.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:41.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:41.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:51:42.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:42.138 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:42.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37448 150' command took 2 ms to send, 1329 ms to get response, and 1335 ms overall
17-03-17 19:51:42.148 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171141
17-03-17 19:51:42.148 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17114 mm
17-03-17 19:51:42.148 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:42.148 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:51:42.148 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 19:51:42.148 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37386, sync = True, waitForSettling = False)
17-03-17 19:51:42.148 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:42.148 -07 000000424 INF: Z Motor: Moving to -0.171142 mm, started at -0.170631 mm, distance = -0.51 um
17-03-17 19:51:42.148 -07 000000429 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:51:42.158 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:42.158 -07 000000501 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:42.158 -07 000000424 INF: FPGA: Xmit ZDACW 37386\n [Z Motor]
17-03-17 19:51:42.158 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:51:42.158 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:42.158 -07 000000501 INF: Y Motor: Moving 1338 steps-13
17-03-17 19:51:42.168 -07 000000424 INF: FPGA: 'ZDACW 37386' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:51:42.168 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:42.168 -07 000000462 INF: FPGA: Recv ZDACR 37386
17-03-17 19:51:42.178 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:42.178 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:42.178 -07 000000424 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:51:42.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:51:42.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:51:42.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:42.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:51:42.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:51:42.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:42.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:42.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:51:42.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:51:42.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:51:42.548 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:51:42.548 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:51:42.588 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:42.588 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-17 19:51:42.598 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:51:42.598 -07 000000501 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:42.598 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:51:42.598 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.118 mm/sec
17-03-17 19:51:43.548 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:43.548 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-17 19:51:43.558 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:43.558 -07 000000501 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:43.578 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:43.578 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:51:43.578 -07 000000501 INF: Y Motor: Moved to 64.8784 after 1427 ms (table move)
17-03-17 19:51:43.578 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171142 mm (DAC = 37386)
17-03-17 19:51:43.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35933
17-03-17 19:51:43.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:43.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.588 -07 000000569 INF: FPGA: Recv ZSGSRD 35929
17-03-17 19:51:43.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.598 -07 000000569 INF: FPGA: Recv ZSGSRD 35933
17-03-17 19:51:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.608 -07 000000501 INF: FPGA: Recv ZSGSRD 35930
17-03-17 19:51:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:51:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.628 -07 000000429 INF: FPGA: Recv ZSGSRD 35932
17-03-17 19:51:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.638 -07 000000429 INF: FPGA: Recv ZSGSRD 35921
17-03-17 19:51:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.648 -07 000000569 INF: FPGA: Recv ZSGSRD 35931
17-03-17 19:51:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35928
17-03-17 19:51:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35928
17-03-17 19:51:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:43.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 31990
17-03-17 19:51:43.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -8.7 V.
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35931 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35921 (-170.2 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35931, posNoise = 11, negNoise = 10
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: After move to -0.171142, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:51:43.688 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:43.738 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:51:43.738 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:43.738 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.171151718476748. ----------
17-03-17 19:51:43.738 -07 000000610 INF: Cycle	31	Tile	7	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:43.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37209, sync = True, waitForSettling = True)
17-03-17 19:51:43.738 -07 000000610 INF: Z Motor: Moving to -0.170332 mm, started at -0.171152 mm, distance = 0.82 um
17-03-17 19:51:43.738 -07 000000610 INF: FPGA: Xmit ZDACW 37209\n [Z Motor]
17-03-17 19:51:43.738 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:51:43.748 -07 000000610 INF: FPGA: 'ZDACW 37209' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:43.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:43.748 -07 000000569 INF: FPGA: Recv ZDACR 37209
17-03-17 19:51:43.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:51:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.918 -07 000000429 INF: FPGA: Recv ZSGSRD 35806
17-03-17 19:51:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35809
17-03-17 19:51:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.938 -07 000000429 INF: FPGA: Recv ZSGSRD 35810
17-03-17 19:51:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.948 -07 000000618 INF: FPGA: Recv ZSGSRD 35804
17-03-17 19:51:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35802
17-03-17 19:51:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.968 -07 000000429 INF: FPGA: Recv ZSGSRD 35801
17-03-17 19:51:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.978 -07 000000618 INF: FPGA: Recv ZSGSRD 35802
17-03-17 19:51:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.988 -07 000000429 INF: FPGA: Recv ZSGSRD 35806
17-03-17 19:51:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:43.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:43.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35804
17-03-17 19:51:44.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:44.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:44.008 -07 000000501 INF: FPGA: Recv ZPIEZORD 31849
17-03-17 19:51:44.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:44.018 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.7 V.
17-03-17 19:51:44.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35805 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35801 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:51:44.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 5, negNoise = 4
17-03-17 19:51:44.018 -07 000000610 INF: Z Motor: After move to -0.170332, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:44.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:51:44.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:44.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:44.018 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:44.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:44.018 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:44.018 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:44.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:44.018 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:44.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:44.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:44.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:51:44.018 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:44.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:44.018 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:44.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:44.028 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:44.028 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:51:44.028 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:51:44.038 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:51:44.038 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:51:44.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37386 150\n [Camera]
17-03-17 19:51:44.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:44.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:44.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:44.648 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:44.648 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:44.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:51:44.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:44.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:44.648 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:44.648 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:44.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:51:44.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 791
17-03-17 19:51:44.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:45.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:51:45.028 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:51:45.028 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:45.028 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:45.028 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:51:45.028 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:51:45.028 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:51:45.028 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:45.038 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:45.038 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:51:45.178 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:45.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:45.188 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:45.188 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:45.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:51:45.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:45.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:45.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:45.188 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:45.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:51:45.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:45.378 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:45.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37386 150' command took 2 ms to send, 1330 ms to get response, and 1335 ms overall
17-03-17 19:51:45.378 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170837
17-03-17 19:51:45.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17084 mm
17-03-17 19:51:45.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:45.378 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:51:45.378 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 19:51:45.378 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:45.378 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37319, sync = True, waitForSettling = False)
17-03-17 19:51:45.378 -07 000000569 INF: Z Motor: Moving to -0.170835 mm, started at -0.170342 mm, distance = -0.49 um
17-03-17 19:51:45.378 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-17 19:51:45.388 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:45.388 -07 000000541 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:45.388 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:45.388 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:51:45.388 -07 000000569 INF: FPGA: Xmit ZDACW 37319\n [Z Motor]
17-03-17 19:51:45.388 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:51:45.398 -07 000000569 INF: FPGA: 'ZDACW 37319' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:51:45.398 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:45.398 -07 000000431 INF: FPGA: Recv ZDACR 37319
17-03-17 19:51:45.408 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:45.408 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:45.408 -07 000000569 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:51:45.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:51:45.578 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:51:45.578 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:45.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:51:45.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:51:45.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:45.578 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:51:45.578 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:51:45.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:51:45.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:51:45.778 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:51:45.778 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:51:45.818 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:45.818 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:51:45.828 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:51:45.828 -07 000000541 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:45.828 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:51:45.828 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 19:51:46.728 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:46.778 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:46.778 -07 000000429 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:51:46.788 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:46.788 -07 000000541 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:46.808 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:46.808 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:46.808 -07 000000541 INF: Y Motor: Moved to 65.7139 after 1430 ms (table move)
17-03-17 19:51:46.808 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170835 mm (DAC = 37319)
17-03-17 19:51:46.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.818 -07 000000541 INF: FPGA: Recv ZSGSRD 35891
17-03-17 19:51:46.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 19:51:46.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.818 -07 000000482 INF: FPGA: Recv ZSGSRD 35881
17-03-17 19:51:46.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:51:46.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35877
17-03-17 19:51:46.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35889
17-03-17 19:51:46.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.848 -07 000000482 INF: FPGA: Recv ZSGSRD 35879
17-03-17 19:51:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.858 -07 000000482 INF: FPGA: Recv ZSGSRD 35882
17-03-17 19:51:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.868 -07 000000429 INF: FPGA: Recv ZSGSRD 35876
17-03-17 19:51:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:51:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.888 -07 000000482 INF: FPGA: Recv ZSGSRD 35881
17-03-17 19:51:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:46.898 -07 000000482 INF: FPGA: Recv ZSGSRD 35885
17-03-17 19:51:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:46.908 -07 000000482 INF: FPGA: Recv ZPIEZORD 31953
17-03-17 19:51:46.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -8.7 V.
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35882 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35882 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35876 (-169.9 uncal um), Max = 35891 (-170.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35882, posNoise = 9, negNoise = 6
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: After move to -0.170835, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:51:46.918 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:46.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:51:46.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:46.968 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.170836932081802. ----------
17-03-17 19:51:46.968 -07 000000610 INF: Cycle	31	Tile	8	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:46.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37143, sync = True, waitForSettling = True)
17-03-17 19:51:46.968 -07 000000610 INF: Z Motor: Moving to -0.170030 mm, started at -0.170837 mm, distance = 0.81 um
17-03-17 19:51:46.968 -07 000000610 INF: FPGA: Xmit ZDACW 37143\n [Z Motor]
17-03-17 19:51:46.968 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:51:46.978 -07 000000610 INF: FPGA: 'ZDACW 37143' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:46.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:46.978 -07 000000561 INF: FPGA: Recv ZDACR 37143
17-03-17 19:51:46.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:46.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:47.038 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.954032,
17-03-17 19:51:47.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.138 -07 000000431 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:51:47.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:47.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.148 -07 000000561 INF: FPGA: Recv ZSGSRD 35754
17-03-17 19:51:47.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.158 -07 000000569 INF: FPGA: Recv ZSGSRD 35757
17-03-17 19:51:47.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.168 -07 000000429 INF: FPGA: Recv ZSGSRD 35757
17-03-17 19:51:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35760
17-03-17 19:51:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.188 -07 000000541 INF: FPGA: Recv ZSGSRD 35758
17-03-17 19:51:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35755
17-03-17 19:51:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:51:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35762
17-03-17 19:51:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:47.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35761
17-03-17 19:51:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:47.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:47.248 -07 000000569 INF: FPGA: Recv ZPIEZORD 31744
17-03-17 19:51:47.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:47.258 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.9 V.
17-03-17 19:51:47.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35758 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35757 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35754 (-169.1 uncal um), Max = 35762 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:51:47.258 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35758, posNoise = 4, negNoise = 4
17-03-17 19:51:47.258 -07 000000610 INF: Z Motor: After move to -0.170030, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:47.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 19:51:47.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:47.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:47.258 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:47.258 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:47.258 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:47.258 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:47.258 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:47.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:47.258 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:47.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:47.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:47.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:47.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:47.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:47.268 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:47.268 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:47.278 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:51:47.278 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:51:47.278 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:51:47.278 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:51:47.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37319 150\n [Camera]
17-03-17 19:51:47.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:47.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:47.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:47.888 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:47.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:47.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:51:47.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:47.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:47.888 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:47.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:47.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:51:48.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37319 791
17-03-17 19:51:48.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:48.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:51:48.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:51:48.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:48.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:51:48.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:51:48.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:48.268 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:48.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:51:48.268 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:48.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:51:48.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:48.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:48.428 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:48.428 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:48.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:51:48.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:48.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:48.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:48.428 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:48.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 19:51:48.618 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:51:48.618 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:48.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37319 150' command took 2 ms to send, 1323 ms to get response, and 1336 ms overall
17-03-17 19:51:48.618 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170416
17-03-17 19:51:48.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17042 mm
17-03-17 19:51:48.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:48.618 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:51:48.618 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 19:51:48.618 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:48.618 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37227, sync = True, waitForSettling = False)
17-03-17 19:51:48.618 -07 000000429 INF: Z Motor: Moving to -0.170414 mm, started at -0.170040 mm, distance = -0.37 um
17-03-17 19:51:48.628 -07 000000429 INF: FPGA: Xmit ZDACW 37227\n [Z Motor]
17-03-17 19:51:48.628 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:51:48.628 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 19:51:48.628 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:48.628 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:48.628 -07 000000569 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:51:48.628 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:51:48.638 -07 000000429 INF: FPGA: 'ZDACW 37227' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:51:48.638 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:48.648 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:48.648 -07 000000424 INF: FPGA: Recv ZDACR 37227
17-03-17 19:51:48.658 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:48.658 -07 000000429 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:51:48.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:51:48.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:51:48.808 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:48.808 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:51:48.808 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:51:48.808 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:48.808 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:48.818 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:48.818 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:51:48.818 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:51:49.008 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:51:49.008 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:51:49.048 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:49.048 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-17 19:51:49.058 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:49.058 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:49.058 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:51:49.058 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.190 mm/sec
17-03-17 19:51:50.008 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:50.008 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-17 19:51:50.018 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:50.018 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:50.038 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:50.038 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:50.038 -07 000000569 INF: Y Motor: Moved to 66.5386 after 1415 ms (table move)
17-03-17 19:51:50.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170414 mm (DAC = 37227)
17-03-17 19:51:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.038 -07 000000431 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:51:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:50.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:51:50.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.058 -07 000000561 INF: FPGA: Recv ZSGSRD 35818
17-03-17 19:51:50.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.068 -07 000000462 INF: FPGA: Recv ZSGSRD 35822
17-03-17 19:51:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.078 -07 000000561 INF: FPGA: Recv ZSGSRD 35825
17-03-17 19:51:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35817
17-03-17 19:51:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.098 -07 000000478 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:51:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35814
17-03-17 19:51:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.118 -07 000000462 INF: FPGA: Recv ZSGSRD 35817
17-03-17 19:51:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35806
17-03-17 19:51:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:50.138 -07 000000431 INF: FPGA: Recv ZPIEZORD 31853
17-03-17 19:51:50.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -8.8 V.
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35816 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35806 (-169.5 uncal um), Max = 35825 (-169.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35816, posNoise = 9, negNoise = 10
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: After move to -0.170414, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 105 ms (allowed 150 ms), total time = 1522 ms
17-03-17 19:51:50.148 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:50.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 19:51:50.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:50.198 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.170412934080445. ----------
17-03-17 19:51:50.198 -07 000000610 INF: Cycle	31	Tile	9	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:50.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37051, sync = True, waitForSettling = True)
17-03-17 19:51:50.198 -07 000000610 INF: Z Motor: Moving to -0.169609 mm, started at -0.170413 mm, distance = 0.80 um
17-03-17 19:51:50.198 -07 000000610 INF: FPGA: Xmit ZDACW 37051\n [Z Motor]
17-03-17 19:51:50.198 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:51:50.208 -07 000000610 INF: FPGA: 'ZDACW 37051' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:50.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:50.208 -07 000000478 INF: FPGA: Recv ZDACR 37051
17-03-17 19:51:50.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35699
17-03-17 19:51:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.378 -07 000000438 INF: FPGA: Recv ZSGSRD 35691
17-03-17 19:51:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35700
17-03-17 19:51:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35693
17-03-17 19:51:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.408 -07 000000541 INF: FPGA: Recv ZSGSRD 35688
17-03-17 19:51:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.418 -07 000000561 INF: FPGA: Recv ZSGSRD 35691
17-03-17 19:51:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.428 -07 000000541 INF: FPGA: Recv ZSGSRD 35694
17-03-17 19:51:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35695
17-03-17 19:51:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.448 -07 000000424 INF: FPGA: Recv ZSGSRD 35692
17-03-17 19:51:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:50.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35696
17-03-17 19:51:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:50.468 -07 000000438 INF: FPGA: Recv ZPIEZORD 31697
17-03-17 19:51:50.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:50.478 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -8.8 V.
17-03-17 19:51:50.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35694 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35688 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:51:50.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35694, posNoise = 6, negNoise = 6
17-03-17 19:51:50.478 -07 000000610 INF: Z Motor: After move to -0.169609, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:50.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:51:50.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:50.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:50.478 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:50.478 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:50.478 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:50.478 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:50.478 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:50.478 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:50.478 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:50.478 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:50.478 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:50.478 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:50.488 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:51:50.488 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:50.488 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:50.488 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:50.498 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:51:50.498 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:51:50.498 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:51:50.498 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:51:50.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37227 150\n [Camera]
17-03-17 19:51:50.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:51.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:51.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:51.108 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:51.108 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:51.108 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 19:51:51.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:51.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:51.118 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:51.118 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:51.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 19:51:51.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37227 791
17-03-17 19:51:51.448 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:51:51.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:51:51.488 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:51:51.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:51.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:51:51.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:51:51.488 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:51.498 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:51.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:51.498 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:51:51.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:51:51.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:51.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:51.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:51.788 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:51.788 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:51.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:51.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:51.798 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:51.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:51:51.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:51.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:51:51.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:51.838 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:51.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37227 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:51:51.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:51:51.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169629180199151. ------
17-03-17 19:51:51.848 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17642 mm
17-03-17 19:51:51.848 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:51.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:52.178 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:51:52.178 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:51:52.178 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:52.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:51:52.178 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:51:52.178 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:52.178 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:51:52.178 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:51:52.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 19:51:52.188 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:51:52.188 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:51:52.198 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 19:51:52.198 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:52.198 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:52.198 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-17 19:51:52.198 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 344 ms to get response, and 352 ms overall
17-03-17 19:51:52.198 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38539, sync = True, waitForSettling = False)
17-03-17 19:51:52.198 -07 000000569 INF: Z Motor: Moving to -0.176420 mm, started at -0.169629 mm, distance = -6.79 um
17-03-17 19:51:52.208 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:52.208 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:52.208 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:52.208 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:51:52.208 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:51:52.218 -07 000000569 INF: FPGA: Xmit ZDACW 38539\n [Z Motor]
17-03-17 19:51:52.228 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:52.748 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:51:52.748 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:51:52.748 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:51:52.748 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 531 ms to get response, and 545 ms overall
17-03-17 19:51:52.748 -07 000000569 INF: FPGA: 'ZDACW 38539' command took 0 ms to send, 520 ms to get response, and 544 ms overall
17-03-17 19:51:52.748 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:52.748 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.974486,
17-03-17 19:51:52.748 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 511 ms to get response, and 540 ms overall
17-03-17 19:51:52.748 -07 000000429 INF: FPGA: Recv ZDACR 38539
17-03-17 19:51:52.758 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:52.758 -07 000000569 INF: Z Motor: MoveAbsStepped took 554 ms (did NOT wait for settling yet))
17-03-17 19:51:52.798 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:52.798 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:51:52.808 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:51:52.808 -07 000000438 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:52.808 -07 000000438 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 19:51:52.808 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 541 ms, distance = 0.844 mm, average velocity = 1.560 mm/sec
17-03-17 19:51:53.758 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:53.758 -07 000000478 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:51:53.768 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:53.768 -07 000000438 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:53.788 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:53.788 -07 000000438 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:53.788 -07 000000438 INF: Y Motor: Moved to 67.3716 after 1591 ms (table move)
17-03-17 19:51:53.788 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176420 mm (DAC = 38539)
17-03-17 19:51:53.788 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36763
17-03-17 19:51:53.798 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:53.798 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.798 -07 000000382 INF: FPGA: Recv ZSGSRD 36750
17-03-17 19:51:53.808 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.808 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.808 -07 000000478 INF: FPGA: Recv ZSGSRD 36754
17-03-17 19:51:53.818 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.818 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.818 -07 000000561 INF: FPGA: Recv ZSGSRD 36745
17-03-17 19:51:53.828 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.828 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36749
17-03-17 19:51:53.838 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.838 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36748
17-03-17 19:51:53.848 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.848 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.848 -07 000000569 INF: FPGA: Recv ZSGSRD 36754
17-03-17 19:51:53.858 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.858 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.858 -07 000000561 INF: FPGA: Recv ZSGSRD 36754
17-03-17 19:51:53.868 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.868 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.868 -07 000000561 INF: FPGA: Recv ZSGSRD 36750
17-03-17 19:51:53.878 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.878 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:53.878 -07 000000478 INF: FPGA: Recv ZSGSRD 36755
17-03-17 19:51:53.888 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.888 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:53.888 -07 000000561 INF: FPGA: Recv ZPIEZORD 33074
17-03-17 19:51:53.898 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.2 V.
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36752 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36745 (-175.5 uncal um), Max = 36763 (-175.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36752, posNoise = 11, negNoise = 7
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: After move to -0.176420, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: Settle wait time = 1589 ms, measure time = 105 ms (allowed 150 ms), total time = 1694 ms
17-03-17 19:51:53.898 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:53.948 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2097 ms
17-03-17 19:51:53.948 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:53.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:53.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:53.948 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:53.948 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:53.948 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:51:53.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:53.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:53.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:51:53.958 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:53.958 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:51:53.968 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:51:53.968 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:51:53.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:51:54.018 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:51:54.218 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:51:54.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:51:54.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:51:54.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:51:54.258 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:51:54.258 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:51:54.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:51:54.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:51:54.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:54.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:51:54.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:51:54.358 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:51:54.358 -07 000000462 INF: Autofocus start
17-03-17 19:51:54.358 -07 000000462 INF: MeasureProfile start
17-03-17 19:51:54.358 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:51:54.368 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:54.368 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:51:54.368 -07 000000462 INF: MeasureProfile done
17-03-17 19:51:54.368 -07 000000462 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 19:51:54.368 -07 000000462 INF: Autofocus finished
17-03-17 19:51:54.568 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:51:54.568 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:51:54.568 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176425996645134. ----------
17-03-17 19:51:54.568 -07 000000610 INF: Cycle	31	Tile	10	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:54.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36945, sync = True, waitForSettling = True)
17-03-17 19:51:54.578 -07 000000610 INF: Z Motor: Moving to -0.169123 mm, started at -0.176426 mm, distance = 7.30 um
17-03-17 19:51:54.578 -07 000000610 INF: FPGA: Xmit ZDACW 36945\n [Z Motor]
17-03-17 19:51:54.578 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:51:54.588 -07 000000610 INF: FPGA: 'ZDACW 36945' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:54.588 -07 000000478 INF: FPGA: Recv ZDACR 36945
17-03-17 19:51:54.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35613
17-03-17 19:51:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.758 -07 000000478 INF: FPGA: Recv ZSGSRD 35618
17-03-17 19:51:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.768 -07 000000429 INF: FPGA: Recv ZSGSRD 35622
17-03-17 19:51:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.778 -07 000000478 INF: FPGA: Recv ZSGSRD 35620
17-03-17 19:51:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.788 -07 000000569 INF: FPGA: Recv ZSGSRD 35621
17-03-17 19:51:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.798 -07 000000561 INF: FPGA: Recv ZSGSRD 35622
17-03-17 19:51:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35613
17-03-17 19:51:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.818 -07 000000501 INF: FPGA: Recv ZSGSRD 35614
17-03-17 19:51:54.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35615
17-03-17 19:51:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:54.838 -07 000000431 INF: FPGA: Recv ZSGSRD 35616
17-03-17 19:51:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:54.848 -07 000000431 INF: FPGA: Recv ZPIEZORD 31570
17-03-17 19:51:54.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:54.858 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.9 V.
17-03-17 19:51:54.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35617 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35617 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35613 (-168.2 uncal um), Max = 35622 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:51:54.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35617, posNoise = 5, negNoise = 4
17-03-17 19:51:54.858 -07 000000610 INF: Z Motor: After move to -0.169123, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:54.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:51:54.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:54.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:54.858 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:54.858 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:54.858 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:54.858 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:54.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:54.858 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:54.858 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:54.858 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:54.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:51:54.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:54.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:51:54.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:54.858 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:51:54.868 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:54.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:51:54.868 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:51:54.868 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:51:54.868 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:51:54.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37122 150\n [Camera]
17-03-17 19:51:55.078 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:55.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:51:55.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:51:55.488 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:55.488 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:51:55.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:51:55.488 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:55.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:55.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:51:55.608 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:55.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:51:55.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37122 791
17-03-17 19:51:55.828 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:55.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:51:55.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:51:55.978 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:55.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:51:55.978 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:51:55.978 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:55.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:55.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 19:51:55.988 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:55.988 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 19:51:56.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:56.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:56.018 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:56.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:56.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:56.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:56.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:56.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:51:56.028 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:56.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:51:56.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:56.208 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:56.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37122 150' command took 2 ms to send, 1329 ms to get response, and 1335 ms overall
17-03-17 19:51:56.218 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169452
17-03-17 19:51:56.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16945 mm
17-03-17 19:51:56.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:56.218 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:51:56.218 -07 000000431 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 19:51:56.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:56.218 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37017, sync = True, waitForSettling = False)
17-03-17 19:51:56.218 -07 000000569 INF: Z Motor: Moving to -0.169453 mm, started at -0.169135 mm, distance = -0.32 um
17-03-17 19:51:56.218 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:51:56.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:56.228 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:56.228 -07 000000431 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:56.228 -07 000000431 INF: Y Motor: Moving 1346 steps-23
17-03-17 19:51:56.228 -07 000000569 INF: FPGA: Xmit ZDACW 37017\n [Z Motor]
17-03-17 19:51:56.228 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:51:56.238 -07 000000569 INF: FPGA: 'ZDACW 37017' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:51:56.238 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:56.238 -07 000000424 INF: FPGA: Recv ZDACR 37017
17-03-17 19:51:56.248 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:56.248 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:56.248 -07 000000569 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 19:51:56.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:51:56.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:51:56.398 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:56.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:51:56.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:51:56.408 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:56.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:56.408 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:51:56.408 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:51:56.418 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:51:56.618 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:51:56.618 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:51:56.658 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:56.658 -07 000000501 INF: FPGA: Recv YRDPOS 139682
17-03-17 19:51:56.668 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:56.668 -07 000000431 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:56.668 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:51:56.668 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 19:51:56.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:51:56.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:51:57.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:57.618 -07 000000569 INF: FPGA: Recv YRDPOS 139682
17-03-17 19:51:57.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:51:57.628 -07 000000431 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:57.648 -07 000000431 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:51:57.648 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:51:57.648 -07 000000431 INF: Y Motor: Moved to 68.2041 after 1427 ms (table move)
17-03-17 19:51:57.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169453 mm (DAC = 37017)
17-03-17 19:51:57.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.648 -07 000000424 INF: FPGA: Recv ZSGSRD 35661
17-03-17 19:51:57.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:57.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.658 -07 000000501 INF: FPGA: Recv ZSGSRD 35667
17-03-17 19:51:57.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35667
17-03-17 19:51:57.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:51:57.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.678 -07 000000501 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:51:57.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.688 -07 000000561 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:51:57.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:51:57.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.708 -07 000000561 INF: FPGA: Recv ZSGSRD 35669
17-03-17 19:51:57.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.718 -07 000000569 INF: FPGA: Recv ZSGSRD 35660
17-03-17 19:51:57.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.728 -07 000000561 INF: FPGA: Recv ZSGSRD 35666
17-03-17 19:51:57.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35669
17-03-17 19:51:57.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:57.748 -07 000000561 INF: FPGA: Recv ZPIEZORD 31694
17-03-17 19:51:57.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -8.8 V.
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35667 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35660 (-168.5 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35667, posNoise = 7, negNoise = 7
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: After move to -0.169453, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:51:57.758 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:51:57.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:51:57.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:51:57.808 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.169455726471323. ----------
17-03-17 19:51:57.808 -07 000000610 INF: Cycle	31	Tile	11	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:51:57.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36840, sync = True, waitForSettling = True)
17-03-17 19:51:57.808 -07 000000610 INF: Z Motor: Moving to -0.168643 mm, started at -0.169456 mm, distance = 0.81 um
17-03-17 19:51:57.808 -07 000000610 INF: FPGA: Xmit ZDACW 36840\n [Z Motor]
17-03-17 19:51:57.808 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:51:57.818 -07 000000610 INF: FPGA: 'ZDACW 36840' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:51:57.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:57.818 -07 000000431 INF: FPGA: Recv ZDACR 36840
17-03-17 19:51:57.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:51:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35540
17-03-17 19:51:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.988 -07 000000431 INF: FPGA: Recv ZSGSRD 35546
17-03-17 19:51:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:57.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35546
17-03-17 19:51:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35538
17-03-17 19:51:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.018 -07 000000501 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:51:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.028 -07 000000561 INF: FPGA: Recv ZSGSRD 35543
17-03-17 19:51:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35543
17-03-17 19:51:58.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.048 -07 000000431 INF: FPGA: Recv ZSGSRD 35539
17-03-17 19:51:58.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35544
17-03-17 19:51:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:51:58.068 -07 000000424 INF: FPGA: Recv ZSGSRD 35547
17-03-17 19:51:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:51:58.078 -07 000000382 INF: FPGA: Recv ZPIEZORD 31494
17-03-17 19:51:58.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:51:58.088 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.9 V.
17-03-17 19:51:58.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35543 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35538 (-167.8 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:51:58.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 4, negNoise = 5
17-03-17 19:51:58.088 -07 000000610 INF: Z Motor: After move to -0.168643, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:51:58.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:51:58.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:51:58.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:51:58.088 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:51:58.088 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:51:58.088 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:51:58.088 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:51:58.088 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:51:58.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:51:58.088 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:51:58.088 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:51:58.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:51:58.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:51:58.098 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:51:58.098 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:51:58.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:51:58.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:51:58.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:51:58.108 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:51:58.108 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:51:58.108 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:51:58.118 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.008536,
17-03-17 19:51:58.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37017 150\n [Camera]
17-03-17 19:51:58.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:51:58.728 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:51:58.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:51:58.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:58.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:58.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:51:58.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:51:58.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:51:58.738 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:58.738 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:58.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:51:58.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37017 791
17-03-17 19:51:59.068 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:51:59.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:51:59.118 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:51:59.118 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:59.118 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:59.118 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:51:59.118 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:51:59.118 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:59.128 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:51:59.128 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:51:59.128 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:51:59.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:51:59.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:51:59.268 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:51:59.268 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:51:59.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:51:59.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:51:59.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:51:59.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:51:59.268 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:51:59.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:51:59.458 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:51:59.458 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:51:59.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37017 150' command took 2 ms to send, 1330 ms to get response, and 1355 ms overall
17-03-17 19:51:59.468 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169252
17-03-17 19:51:59.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16925 mm
17-03-17 19:51:59.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:51:59.468 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:51:59.468 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36973, sync = True, waitForSettling = False)
17-03-17 19:51:59.468 -07 000000438 INF: Z Motor: Moving to -0.169252 mm, started at -0.168659 mm, distance = -0.59 um
17-03-17 19:51:59.468 -07 000000438 INF: FPGA: Xmit ZDACW 36973\n [Z Motor]
17-03-17 19:51:59.468 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-17 19:51:59.468 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:51:59.478 -07 000000438 INF: FPGA: 'ZDACW 36973' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:51:59.478 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:59.478 -07 000000501 INF: FPGA: Recv YRDPOS 139682
17-03-17 19:51:59.488 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:51:59.488 -07 000000478 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:59.488 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:51:59.488 -07 000000478 INF: Y Motor: Moving 1342 steps-17
17-03-17 19:51:59.488 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:51:59.488 -07 000000501 INF: FPGA: Recv ZDACR 36973
17-03-17 19:51:59.498 -07 000000438 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:51:59.498 -07 000000438 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:51:59.498 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:51:59.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:51:59.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:51:59.658 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:51:59.658 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:59.658 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:51:59.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:51:59.668 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:59.668 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:51:59.668 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:51:59.668 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:51:59.868 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:51:59.868 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:51:59.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:51:59.908 -07 000000462 INF: FPGA: Recv YRDPOS 141366
17-03-17 19:51:59.918 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:51:59.918 -07 000000478 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:51:59.918 -07 000000478 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:51:59.918 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-17 19:52:00.868 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:00.868 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:52:00.878 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.878 -07 000000478 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:00.898 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:00.898 -07 000000478 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:52:00.898 -07 000000478 INF: Y Motor: Moved to 69.0269 after 1427 ms (table move)
17-03-17 19:52:00.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169252 mm (DAC = 36973)
17-03-17 19:52:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35638
17-03-17 19:52:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35637
17-03-17 19:52:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35641
17-03-17 19:52:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.928 -07 000000501 INF: FPGA: Recv ZSGSRD 35640
17-03-17 19:52:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.938 -07 000000424 INF: FPGA: Recv ZSGSRD 35632
17-03-17 19:52:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35637
17-03-17 19:52:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.958 -07 000000478 INF: FPGA: Recv ZSGSRD 35637
17-03-17 19:52:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35630
17-03-17 19:52:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35640
17-03-17 19:52:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:00.988 -07 000000424 INF: FPGA: Recv ZSGSRD 35641
17-03-17 19:52:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:00.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:00.998 -07 000000438 INF: FPGA: Recv ZPIEZORD 31632
17-03-17 19:52:01.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -8.8 V.
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35637 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35638 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35630 (-168.3 uncal um), Max = 35641 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35637, posNoise = 4, negNoise = 7
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: After move to -0.169252, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:52:01.008 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:01.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:52:01.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:01.058 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.16926300010707. ----------
17-03-17 19:52:01.058 -07 000000610 INF: Cycle	31	Tile	12	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:01.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36796, sync = True, waitForSettling = True)
17-03-17 19:52:01.058 -07 000000610 INF: Z Motor: Moving to -0.168441 mm, started at -0.169263 mm, distance = 0.82 um
17-03-17 19:52:01.058 -07 000000610 INF: FPGA: Xmit ZDACW 36796\n [Z Motor]
17-03-17 19:52:01.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:52:01.068 -07 000000610 INF: FPGA: 'ZDACW 36796' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:52:01.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:01.068 -07 000000424 INF: FPGA: Recv ZDACR 36796
17-03-17 19:52:01.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35516
17-03-17 19:52:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35519
17-03-17 19:52:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:52:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:52:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35511
17-03-17 19:52:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:52:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:52:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:52:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:52:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:01.318 -07 000000424 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:52:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:01.328 -07 000000478 INF: FPGA: Recv ZPIEZORD 31429
17-03-17 19:52:01.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:01.338 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.0 V.
17-03-17 19:52:01.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35513 (-167.6 uncal um), Error = 0.8 uncal um, Median = 35510 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35508 (-167.6 uncal um), Max = 35519 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:01.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35513, posNoise = 6, negNoise = 5
17-03-17 19:52:01.338 -07 000000610 INF: Z Motor: After move to -0.168441, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:01.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:52:01.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:01.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:01.338 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:01.338 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:01.338 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:01.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:01.338 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:01.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:01.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:52:01.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:01.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:52:01.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:01.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:01.348 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:01.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:52:01.348 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:01.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:52:01.358 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:52:01.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:01.358 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:52:01.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36973 150\n [Camera]
17-03-17 19:52:01.558 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:01.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:01.968 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:01.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:01.968 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:01.968 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:01.968 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:52:01.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:01.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:01.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:01.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:01.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:52:02.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36973 791
17-03-17 19:52:02.308 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:02.348 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:52:02.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:52:02.348 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:52:02.348 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:02.348 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:52:02.348 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:02.348 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:02.358 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:02.358 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:52:02.358 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:52:02.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:02.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:02.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:02.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:02.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:52:02.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:02.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:02.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:02.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:02.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:52:02.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:02.698 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:02.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36973 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-17 19:52:02.698 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168795
17-03-17 19:52:02.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16880 mm
17-03-17 19:52:02.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:02.698 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:52:02.698 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 19:52:02.698 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:02.698 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 36873, sync = True, waitForSettling = False)
17-03-17 19:52:02.698 -07 000000593 INF: Z Motor: Moving to -0.168794 mm, started at -0.168466 mm, distance = -0.33 um
17-03-17 19:52:02.708 -07 000000593 INF: FPGA: Xmit ZDACW 36873\n [Z Motor]
17-03-17 19:52:02.708 -07 000000438 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:52:02.708 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:52:02.708 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:02.708 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:02.708 -07 000000424 INF: Y Motor: Moving 1353 steps-33
17-03-17 19:52:02.708 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:52:02.718 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:02.718 -07 000000593 INF: FPGA: 'ZDACW 36873' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:02.728 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:02.728 -07 000000541 INF: FPGA: Recv ZDACR 36873
17-03-17 19:52:02.738 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:02.738 -07 000000593 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:52:02.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:52:02.888 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:52:02.888 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:02.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:52:02.888 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:52:02.888 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:02.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:02.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:52:02.898 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:02.898 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:52:03.088 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:52:03.088 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:52:03.128 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:03.128 -07 000000482 INF: FPGA: Recv YRDPOS 143078
17-03-17 19:52:03.138 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:03.138 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:03.138 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:52:03.138 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.197 mm/sec
17-03-17 19:52:03.488 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.004458,
17-03-17 19:52:04.088 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:04.088 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-17 19:52:04.098 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:04.098 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:04.118 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:04.118 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:52:04.118 -07 000000424 INF: Y Motor: Moved to 69.8628 after 1412 ms (table move)
17-03-17 19:52:04.118 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168794 mm (DAC = 36873)
17-03-17 19:52:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35562
17-03-17 19:52:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35561
17-03-17 19:52:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.138 -07 000000382 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:52:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35575
17-03-17 19:52:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.158 -07 000000424 INF: FPGA: Recv ZSGSRD 35562
17-03-17 19:52:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35562
17-03-17 19:52:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:52:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35561
17-03-17 19:52:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.198 -07 000000561 INF: FPGA: Recv ZSGSRD 35562
17-03-17 19:52:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35564
17-03-17 19:52:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:04.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 31538
17-03-17 19:52:04.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -8.9 V.
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35562 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35561 (-167.9 uncal um), Max = 35575 (-168.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 11, negNoise = 3
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: After move to -0.168794, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:52:04.228 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:04.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:52:04.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:04.278 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.168794032620722. ----------
17-03-17 19:52:04.278 -07 000000610 INF: Cycle	31	Tile	13	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:04.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36697, sync = True, waitForSettling = True)
17-03-17 19:52:04.278 -07 000000610 INF: Z Motor: Moving to -0.167988 mm, started at -0.168794 mm, distance = 0.81 um
17-03-17 19:52:04.278 -07 000000610 INF: FPGA: Xmit ZDACW 36697\n [Z Motor]
17-03-17 19:52:04.278 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:52:04.288 -07 000000610 INF: FPGA: 'ZDACW 36697' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:04.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:04.288 -07 000000382 INF: FPGA: Recv ZDACR 36697
17-03-17 19:52:04.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:04.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.448 -07 000000561 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:52:04.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:04.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.458 -07 000000424 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:52:04.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:52:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:52:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:52:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.498 -07 000000561 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:52:04.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.508 -07 000000429 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:52:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.518 -07 000000424 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:52:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.528 -07 000000382 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:52:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:04.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:52:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:04.548 -07 000000382 INF: FPGA: Recv ZPIEZORD 31345
17-03-17 19:52:04.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:04.558 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 19:52:04.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35441 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35440 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35439 (-167.1 uncal um), Max = 35446 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:52:04.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35441, posNoise = 5, negNoise = 2
17-03-17 19:52:04.558 -07 000000610 INF: Z Motor: After move to -0.167988, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:04.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:52:04.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:04.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:04.558 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:04.558 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:04.558 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:04.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:04.558 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:04.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:04.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:04.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:04.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:04.558 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:04.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:04.558 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:04.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:52:04.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:04.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:04.578 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:52:04.578 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:52:04.578 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:52:04.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36873 150\n [Camera]
17-03-17 19:52:04.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:05.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:05.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:05.188 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:05.188 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:05.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:52:05.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:05.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:05.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:05.198 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:05.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:52:05.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36873 791
17-03-17 19:52:05.538 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:52:05.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:52:05.568 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:52:05.568 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:05.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:52:05.568 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:52:05.568 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:05.578 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:05.578 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:52:05.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:05.578 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:52:05.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:05.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:05.728 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:05.728 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:05.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:52:05.728 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:05.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:05.738 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:05.738 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:05.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:52:05.918 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:05.918 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:05.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36873 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-17 19:52:06.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:52:06.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168003854527285. ------
17-03-17 19:52:06.058 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17442 mm
17-03-17 19:52:06.058 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:06.058 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:06.058 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:06.058 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38102, sync = True, waitForSettling = False)
17-03-17 19:52:06.058 -07 000000501 INF: Z Motor: Moving to -0.174420 mm, started at -0.168004 mm, distance = -6.42 um
17-03-17 19:52:06.058 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:52:06.058 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 19:52:06.068 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:06.068 -07 000000501 INF: FPGA: Xmit ZDACW 38102\n [Z Motor]
17-03-17 19:52:06.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:52:06.078 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:06.078 -07 000000501 INF: FPGA: 'ZDACW 38102' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:52:06.078 -07 000000478 INF: FPGA: Recv YRDPOS 143079
17-03-17 19:52:06.088 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:06.088 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:52:06.088 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:06.088 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:06.088 -07 000000382 INF: Y Motor: Moving 1344 steps-21
17-03-17 19:52:06.098 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:06.098 -07 000000431 INF: FPGA: Recv ZDACR 38102
17-03-17 19:52:06.108 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:06.108 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:52:06.108 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:52:06.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:52:06.128 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:52:06.128 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:06.128 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:52:06.128 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:52:06.128 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:06.128 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:06.128 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:52:06.128 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:06.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:52:06.288 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:06.288 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:52:06.478 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:52:06.478 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:52:06.518 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:06.518 -07 000000431 INF: FPGA: Recv YRDPOS 144769
17-03-17 19:52:06.528 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:06.528 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:06.528 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:52:06.528 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 19:52:06.728 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:07.478 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:07.478 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 19:52:07.488 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:07.488 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:07.508 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:07.508 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:07.508 -07 000000382 INF: Y Motor: Moved to 70.6880 after 1445 ms (table move)
17-03-17 19:52:07.508 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174420 mm (DAC = 38102)
17-03-17 19:52:07.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.508 -07 000000431 INF: FPGA: Recv ZSGSRD 36445
17-03-17 19:52:07.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:07.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.518 -07 000000482 INF: FPGA: Recv ZSGSRD 36433
17-03-17 19:52:07.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.528 -07 000000431 INF: FPGA: Recv ZSGSRD 36445
17-03-17 19:52:07.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.538 -07 000000593 INF: FPGA: Recv ZSGSRD 36444
17-03-17 19:52:07.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.548 -07 000000482 INF: FPGA: Recv ZSGSRD 36444
17-03-17 19:52:07.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.558 -07 000000478 INF: FPGA: Recv ZSGSRD 36443
17-03-17 19:52:07.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36431
17-03-17 19:52:07.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.578 -07 000000478 INF: FPGA: Recv ZSGSRD 36443
17-03-17 19:52:07.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.588 -07 000000438 INF: FPGA: Recv ZSGSRD 36438
17-03-17 19:52:07.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:07.598 -07 000000424 INF: FPGA: Recv ZSGSRD 36437
17-03-17 19:52:07.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.608 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:07.608 -07 000000561 INF: FPGA: Recv ZPIEZORD 32692
17-03-17 19:52:07.618 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.3 V.
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36440 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36443 (-173.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36431 (-173.5 uncal um), Max = 36445 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36440, posNoise = 5, negNoise = 9
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: After move to -0.174420, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:52:07.618 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:07.668 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:52:07.668 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:07.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:07.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:07.668 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:07.668 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:07.668 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:07.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:07.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:07.668 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:07.678 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:07.678 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:07.688 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:52:07.688 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:52:07.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:07.738 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:07.938 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:07.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:07.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:07.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:07.978 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:07.978 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:07.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:52:08.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:52:08.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:08.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:08.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:52:08.078 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:08.078 -07 000000438 INF: Autofocus start
17-03-17 19:52:08.078 -07 000000438 INF: MeasureProfile start
17-03-17 19:52:08.078 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:08.088 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:08.088 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:08.088 -07 000000438 INF: MeasureProfile done
17-03-17 19:52:08.088 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:52:08.088 -07 000000438 INF: Autofocus finished
17-03-17 19:52:08.288 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:08.288 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:08.288 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174421642456904. ----------
17-03-17 19:52:08.288 -07 000000610 INF: Cycle	31	Tile	14	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:08.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36635, sync = True, waitForSettling = True)
17-03-17 19:52:08.298 -07 000000610 INF: Z Motor: Moving to -0.167704 mm, started at -0.174422 mm, distance = 6.72 um
17-03-17 19:52:08.298 -07 000000610 INF: FPGA: Xmit ZDACW 36635\n [Z Motor]
17-03-17 19:52:08.298 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:52:08.308 -07 000000610 INF: FPGA: 'ZDACW 36635' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:08.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:08.308 -07 000000593 INF: FPGA: Recv ZDACR 36635
17-03-17 19:52:08.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.468 -07 000000478 INF: FPGA: Recv ZSGSRD 35397
17-03-17 19:52:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:08.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.478 -07 000000462 INF: FPGA: Recv ZSGSRD 35397
17-03-17 19:52:08.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:52:08.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.498 -07 000000561 INF: FPGA: Recv ZSGSRD 35396
17-03-17 19:52:08.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35399
17-03-17 19:52:08.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35391
17-03-17 19:52:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35398
17-03-17 19:52:08.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:08.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35398
17-03-17 19:52:08.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35396
17-03-17 19:52:08.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:08.568 -07 000000593 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:52:08.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:08.578 -07 000000593 INF: FPGA: Recv ZPIEZORD 31309
17-03-17 19:52:08.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:08.588 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.0 V.
17-03-17 19:52:08.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35396 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35396 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35391 (-166.8 uncal um), Max = 35399 (-166.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:08.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35396, posNoise = 3, negNoise = 5
17-03-17 19:52:08.588 -07 000000610 INF: Z Motor: After move to -0.167704, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:08.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 19:52:08.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:08.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:08.588 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:08.588 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:08.588 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:08.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:08.588 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:08.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:08.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:08.588 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:08.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:08.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:08.598 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:08.598 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:08.598 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:52:08.598 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:08.608 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:08.608 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:08.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:08.608 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:08.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36812 150\n [Camera]
17-03-17 19:52:08.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:08.848 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.009895,
17-03-17 19:52:09.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:09.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:09.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:09.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:09.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:09.228 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:09.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:09.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:09.238 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:09.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:52:09.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36812 791
17-03-17 19:52:09.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:09.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:52:09.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:52:09.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:09.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:52:09.608 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:52:09.608 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:09.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:09.618 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:09.618 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:52:09.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:52:09.758 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:09.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:09.758 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:09.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:09.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:09.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:09.888 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:09.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:52:09.888 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:09.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:09.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:09.948 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:09.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36812 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-17 19:52:09.948 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168467
17-03-17 19:52:09.948 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16847 mm
17-03-17 19:52:09.948 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:09.958 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:52:09.958 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 19:52:09.958 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:09.958 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = False)
17-03-17 19:52:09.958 -07 000000561 INF: Z Motor: Moving to -0.168469 mm, started at -0.167715 mm, distance = -0.75 um
17-03-17 19:52:09.958 -07 000000462 INF: FPGA: Recv YRDPOS 144769
17-03-17 19:52:09.968 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:09.968 -07 000000438 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:09.968 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:09.968 -07 000000438 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:52:09.968 -07 000000561 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-17 19:52:09.968 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:52:09.978 -07 000000561 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:52:09.978 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:09.978 -07 000000501 INF: FPGA: Recv ZDACR 36802
17-03-17 19:52:09.988 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:09.988 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:09.988 -07 000000561 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:52:10.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:52:10.268 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:52:10.268 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:10.268 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:52:10.268 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:52:10.268 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:10.278 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:10.278 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:52:10.278 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:10.278 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 19:52:10.358 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:52:10.358 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:52:10.398 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:10.398 -07 000000462 INF: FPGA: Recv YRDPOS 146469
17-03-17 19:52:10.408 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:10.408 -07 000000438 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:10.408 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:52:10.408 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-17 19:52:11.358 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:11.358 -07 000000478 INF: FPGA: Recv YRDPOS 146470
17-03-17 19:52:11.368 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.368 -07 000000438 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:11.388 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:11.388 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:52:11.388 -07 000000438 INF: Y Motor: Moved to 71.5186 after 1430 ms (table move)
17-03-17 19:52:11.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168469 mm (DAC = 36802)
17-03-17 19:52:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35516
17-03-17 19:52:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:52:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35514
17-03-17 19:52:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35518
17-03-17 19:52:11.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.428 -07 000000618 INF: FPGA: Recv ZSGSRD 35520
17-03-17 19:52:11.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.438 -07 000000618 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:52:11.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.448 -07 000000431 INF: FPGA: Recv ZSGSRD 35520
17-03-17 19:52:11.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.458 -07 000000431 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:52:11.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.468 -07 000000501 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:52:11.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35511
17-03-17 19:52:11.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:11.488 -07 000000431 INF: FPGA: Recv ZPIEZORD 31519
17-03-17 19:52:11.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.8 V.
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35515 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35515 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35510 (-167.6 uncal um), Max = 35520 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35515, posNoise = 5, negNoise = 5
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:52:11.498 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:11.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:52:11.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:11.548 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.168479246225775. ----------
17-03-17 19:52:11.548 -07 000000610 INF: Cycle	31	Tile	15	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:11.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36625, sync = True, waitForSettling = True)
17-03-17 19:52:11.548 -07 000000610 INF: Z Motor: Moving to -0.167659 mm, started at -0.168479 mm, distance = 0.82 um
17-03-17 19:52:11.548 -07 000000610 INF: FPGA: Xmit ZDACW 36625\n [Z Motor]
17-03-17 19:52:11.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:52:11.558 -07 000000610 INF: FPGA: 'ZDACW 36625' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:52:11.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:11.558 -07 000000482 INF: FPGA: Recv ZDACR 36625
17-03-17 19:52:11.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:11.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.718 -07 000000482 INF: FPGA: Recv ZSGSRD 35387
17-03-17 19:52:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.728 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:11.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35390
17-03-17 19:52:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.738 -07 000000618 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:52:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35386
17-03-17 19:52:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.758 -07 000000561 INF: FPGA: Recv ZSGSRD 35386
17-03-17 19:52:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.768 -07 000000569 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:52:11.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35389
17-03-17 19:52:11.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.788 -07 000000482 INF: FPGA: Recv ZSGSRD 35384
17-03-17 19:52:11.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.798 -07 000000438 INF: FPGA: Recv ZSGSRD 35390
17-03-17 19:52:11.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:11.808 -07 000000561 INF: FPGA: Recv ZSGSRD 35385
17-03-17 19:52:11.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:11.818 -07 000000438 INF: FPGA: Recv ZPIEZORD 31302
17-03-17 19:52:11.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:11.828 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.0 V.
17-03-17 19:52:11.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35384 (-166.8 uncal um), Max = 35394 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:52:11.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 6, negNoise = 4
17-03-17 19:52:11.828 -07 000000610 INF: Z Motor: After move to -0.167659, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:11.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:52:11.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:11.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:11.828 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:11.828 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:11.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:11.828 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:11.828 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:11.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:11.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:52:11.828 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:11.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:11.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:11.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:11.838 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:11.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:52:11.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:11.848 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:52:11.848 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:52:11.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:52:11.848 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:52:11.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36802 150\n [Camera]
17-03-17 19:52:12.048 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:12.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:52:12.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:52:12.458 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:12.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:52:12.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:52:12.458 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:12.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:12.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:52:12.468 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:12.468 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:52:12.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 791
17-03-17 19:52:12.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:12.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:52:12.838 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:52:12.838 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:12.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:52:12.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:52:12.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:12.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:12.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:52:12.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:12.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:52:12.998 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:12.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:12.998 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:12.998 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:12.998 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:52:12.998 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:12.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:12.998 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:12.998 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:12.998 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:52:13.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:13.188 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:13.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36802 150' command took 2 ms to send, 1333 ms to get response, and 1337 ms overall
17-03-17 19:52:13.188 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167580
17-03-17 19:52:13.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16758 mm
17-03-17 19:52:13.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:13.188 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:52:13.188 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 19:52:13.188 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:13.188 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36608, sync = True, waitForSettling = False)
17-03-17 19:52:13.188 -07 000000438 INF: Z Motor: Moving to -0.167581 mm, started at -0.167663 mm, distance = 0.08 um
17-03-17 19:52:13.198 -07 000000438 INF: FPGA: Xmit ZDACW 36608\n [Z Motor]
17-03-17 19:52:13.198 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-17 19:52:13.198 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:52:13.198 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:13.198 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:13.198 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-17 19:52:13.198 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:52:13.208 -07 000000438 INF: FPGA: 'ZDACW 36608' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:52:13.208 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:13.218 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:13.218 -07 000000569 INF: FPGA: Recv ZDACR 36608
17-03-17 19:52:13.228 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:13.228 -07 000000438 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:52:13.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:52:13.378 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:52:13.378 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:13.378 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:52:13.378 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:52:13.378 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:13.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:13.388 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:13.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:52:13.388 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:52:13.578 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:52:13.578 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:52:13.618 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:13.618 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:52:13.628 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:13.628 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:13.628 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:52:13.628 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 19:52:14.218 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.015368,
17-03-17 19:52:14.578 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:14.578 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:52:14.588 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:14.588 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:14.608 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:14.608 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:14.608 -07 000000618 INF: Y Motor: Moved to 72.3491 after 1413 ms (table move)
17-03-17 19:52:14.608 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167581 mm (DAC = 36608)
17-03-17 19:52:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35377
17-03-17 19:52:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35374
17-03-17 19:52:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.628 -07 000000482 INF: FPGA: Recv ZSGSRD 35370
17-03-17 19:52:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.638 -07 000000482 INF: FPGA: Recv ZSGSRD 35382
17-03-17 19:52:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35382
17-03-17 19:52:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.658 -07 000000482 INF: FPGA: Recv ZSGSRD 35380
17-03-17 19:52:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35378
17-03-17 19:52:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:52:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35378
17-03-17 19:52:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.698 -07 000000429 INF: FPGA: Recv ZSGSRD 35377
17-03-17 19:52:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:14.708 -07 000000561 INF: FPGA: Recv ZPIEZORD 31318
17-03-17 19:52:14.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.0 V.
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35377 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35378 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35370 (-166.7 uncal um), Max = 35382 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35377, posNoise = 5, negNoise = 7
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: After move to -0.167581, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 107 ms (allowed 150 ms), total time = 1522 ms
17-03-17 19:52:14.718 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:14.768 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 19:52:14.768 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:14.768 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167592704950212. ----------
17-03-17 19:52:14.768 -07 000000610 INF: Cycle	31	Tile	16	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:14.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36431, sync = True, waitForSettling = True)
17-03-17 19:52:14.768 -07 000000610 INF: Z Motor: Moving to -0.166770 mm, started at -0.167593 mm, distance = 0.82 um
17-03-17 19:52:14.768 -07 000000610 INF: FPGA: Xmit ZDACW 36431\n [Z Motor]
17-03-17 19:52:14.768 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:52:14.778 -07 000000610 INF: FPGA: 'ZDACW 36431' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:14.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:14.778 -07 000000482 INF: FPGA: Recv ZDACR 36431
17-03-17 19:52:14.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:14.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:14.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.938 -07 000000482 INF: FPGA: Recv ZSGSRD 35247
17-03-17 19:52:14.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:14.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35252
17-03-17 19:52:14.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.958 -07 000000482 INF: FPGA: Recv ZSGSRD 35244
17-03-17 19:52:14.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35255
17-03-17 19:52:14.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.978 -07 000000618 INF: FPGA: Recv ZSGSRD 35250
17-03-17 19:52:14.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.988 -07 000000618 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:52:14.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:14.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:14.998 -07 000000429 INF: FPGA: Recv ZSGSRD 35250
17-03-17 19:52:15.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:15.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35249
17-03-17 19:52:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:15.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35251
17-03-17 19:52:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:15.028 -07 000000618 INF: FPGA: Recv ZSGSRD 35246
17-03-17 19:52:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:15.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:15.038 -07 000000618 INF: FPGA: Recv ZPIEZORD 31154
17-03-17 19:52:15.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:15.048 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.0 V.
17-03-17 19:52:15.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35250 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35250 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35244 (-165.9 uncal um), Max = 35255 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:52:15.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35250, posNoise = 5, negNoise = 6
17-03-17 19:52:15.048 -07 000000610 INF: Z Motor: After move to -0.166770, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:15.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:52:15.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:15.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:15.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:15.048 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:15.048 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:15.048 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:15.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:15.048 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:15.048 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:15.048 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:15.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:15.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:15.058 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:15.058 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:15.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:52:15.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:15.068 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:15.068 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:15.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:15.068 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:15.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36608 150\n [Camera]
17-03-17 19:52:15.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:15.678 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:15.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:15.678 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:15.678 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:15.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:52:15.678 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:15.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:15.678 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:15.688 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:15.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:52:15.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36608 791
17-03-17 19:52:16.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:16.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:52:16.078 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:52:16.078 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:16.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:52:16.078 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:52:16.078 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:16.078 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:16.078 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:52:16.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:16.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:52:16.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:16.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:16.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:16.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:16.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:52:16.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:16.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:16.218 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:16.218 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:16.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:52:16.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:16.408 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:16.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36608 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:52:16.408 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167369
17-03-17 19:52:16.408 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16737 mm
17-03-17 19:52:16.408 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:16.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36562, sync = True, waitForSettling = False)
17-03-17 19:52:16.418 -07 000000431 INF: Z Motor: Moving to -0.167370 mm, started at -0.166777 mm, distance = -0.59 um
17-03-17 19:52:16.418 -07 000000431 INF: FPGA: Xmit ZDACW 36562\n [Z Motor]
17-03-17 19:52:16.418 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:52:16.418 -07 000000429 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 19:52:16.418 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:52:16.428 -07 000000431 INF: FPGA: 'ZDACW 36562' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:16.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:16.428 -07 000000424 INF: FPGA: Recv ZDACR 36562
17-03-17 19:52:16.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:16.438 -07 000000431 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 19:52:16.438 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:16.438 -07 000000431 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:52:16.448 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:52:16.448 -07 000000429 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:16.448 -07 000000429 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:16.448 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:52:16.448 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:16.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:52:16.598 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:52:16.598 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:16.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:52:16.598 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:52:16.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:16.608 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:16.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:52:16.608 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:16.608 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:52:16.728 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:16.818 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:52:16.818 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:52:16.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:16.858 -07 000000431 INF: FPGA: Recv YRDPOS 149863
17-03-17 19:52:16.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:16.868 -07 000000429 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:16.868 -07 000000429 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 19:52:16.868 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.231 mm/sec
17-03-17 19:52:17.818 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:17.818 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:52:17.828 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:17.828 -07 000000429 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:17.848 -07 000000429 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:17.848 -07 000000429 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:52:17.848 -07 000000429 INF: Y Motor: Moved to 73.1758 after 1430 ms (table move)
17-03-17 19:52:17.848 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167370 mm (DAC = 36562)
17-03-17 19:52:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.848 -07 000000462 INF: FPGA: Recv ZSGSRD 35337
17-03-17 19:52:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.858 -07 000000424 INF: FPGA: Recv ZSGSRD 35336
17-03-17 19:52:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.868 -07 000000462 INF: FPGA: Recv ZSGSRD 35341
17-03-17 19:52:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35349
17-03-17 19:52:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.888 -07 000000462 INF: FPGA: Recv ZSGSRD 35348
17-03-17 19:52:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35339
17-03-17 19:52:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.908 -07 000000424 INF: FPGA: Recv ZSGSRD 35341
17-03-17 19:52:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.918 -07 000000424 INF: FPGA: Recv ZSGSRD 35340
17-03-17 19:52:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35338
17-03-17 19:52:17.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:17.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35344
17-03-17 19:52:17.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:17.948 -07 000000429 INF: FPGA: Recv ZPIEZORD 31315
17-03-17 19:52:17.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -8.9 V.
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35341 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35340 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35336 (-166.5 uncal um), Max = 35349 (-166.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35341, posNoise = 8, negNoise = 5
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: After move to -0.167370, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:52:17.958 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:18.008 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:52:18.008 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:18.008 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.167361433313109. ----------
17-03-17 19:52:18.008 -07 000000610 INF: Cycle	31	Tile	17	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:18.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 19:52:18.008 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.167361 mm, distance = 0.80 um
17-03-17 19:52:18.008 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 19:52:18.008 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:52:18.018 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:18.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:18.018 -07 000000424 INF: FPGA: Recv ZDACR 36385
17-03-17 19:52:18.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:18.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35215
17-03-17 19:52:18.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35218
17-03-17 19:52:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:52:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35222
17-03-17 19:52:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.218 -07 000000478 INF: FPGA: Recv ZSGSRD 35219
17-03-17 19:52:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35216
17-03-17 19:52:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35220
17-03-17 19:52:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35217
17-03-17 19:52:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35213
17-03-17 19:52:18.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:18.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35220
17-03-17 19:52:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:18.278 -07 000000478 INF: FPGA: Recv ZPIEZORD 31127
17-03-17 19:52:18.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:18.288 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.0 V.
17-03-17 19:52:18.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35218 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35213 (-165.7 uncal um), Max = 35223 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:18.288 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35218, posNoise = 5, negNoise = 5
17-03-17 19:52:18.288 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:18.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:52:18.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:18.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:18.288 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:18.288 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:18.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:18.288 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:18.288 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:18.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:52:18.288 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:18.288 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:52:18.288 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:18.288 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:18.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:18.298 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:18.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:52:18.298 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:18.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:18.308 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:52:18.308 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:18.308 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:52:18.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36562 150\n [Camera]
17-03-17 19:52:18.508 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:18.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:18.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:18.918 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:18.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:18.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:52:18.918 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:18.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:19.038 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:19.048 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:19.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:19.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36562 791
17-03-17 19:52:19.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:19.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:52:19.308 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:52:19.308 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:19.308 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:19.308 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:52:19.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:52:19.428 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:52:19.428 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:19.428 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:52:19.428 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:52:19.458 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 19:52:19.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 19:52:19.458 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:19.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 19:52:19.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 19:52:19.468 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:19.468 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:19.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:19.478 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:19.478 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:52:19.588 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.989471,
17-03-17 19:52:19.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:19.648 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:19.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36562 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:52:19.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:52:19.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166571255219672. ------
17-03-17 19:52:19.658 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17299 mm
17-03-17 19:52:19.658 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:19.658 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:19.658 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:52:19.658 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 19:52:19.658 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37789, sync = True, waitForSettling = False)
17-03-17 19:52:19.658 -07 000000478 INF: Z Motor: Moving to -0.172987 mm, started at -0.166571 mm, distance = -6.42 um
17-03-17 19:52:19.658 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:19.668 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:19.668 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:19.678 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:19.678 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:52:19.688 -07 000000478 INF: FPGA: Xmit ZDACW 37789\n [Z Motor]
17-03-17 19:52:19.688 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:52:19.688 -07 000000424 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:19.688 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:19.688 -07 000000424 INF: Y Motor: Moving 1355 steps-35
17-03-17 19:52:19.688 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:52:19.698 -07 000000478 INF: FPGA: 'ZDACW 37789' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:52:19.698 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:19.708 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:19.708 -07 000000431 INF: FPGA: Recv ZDACR 37789
17-03-17 19:52:19.718 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:19.718 -07 000000478 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:52:19.848 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:52:19.848 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:52:19.848 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:19.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:52:19.848 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:52:19.848 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:19.848 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:19.848 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:52:19.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:19.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:52:19.868 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:19.878 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 210 ms overall
17-03-17 19:52:20.068 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:52:20.068 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:52:20.098 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:20.108 -07 000000501 INF: FPGA: Recv YRDPOS 151567
17-03-17 19:52:20.108 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:20.108 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:20.108 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:52:20.108 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-17 19:52:21.058 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:21.058 -07 000000501 INF: FPGA: Recv YRDPOS 151567
17-03-17 19:52:21.068 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:21.068 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:21.078 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:21.078 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:21.078 -07 000000424 INF: Y Motor: Moved to 74.0073 after 1420 ms (table move)
17-03-17 19:52:21.088 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172987 mm (DAC = 37789)
17-03-17 19:52:21.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.088 -07 000000429 INF: FPGA: Recv ZSGSRD 36222
17-03-17 19:52:21.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.098 -07 000000424 INF: FPGA: Recv ZSGSRD 36218
17-03-17 19:52:21.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.108 -07 000000429 INF: FPGA: Recv ZSGSRD 36223
17-03-17 19:52:21.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.118 -07 000000429 INF: FPGA: Recv ZSGSRD 36225
17-03-17 19:52:21.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.128 -07 000000429 INF: FPGA: Recv ZSGSRD 36220
17-03-17 19:52:21.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.138 -07 000000429 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:52:21.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36215
17-03-17 19:52:21.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:52:21.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36212
17-03-17 19:52:21.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:21.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36214
17-03-17 19:52:21.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.188 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:21.188 -07 000000424 INF: FPGA: Recv ZPIEZORD 32456
17-03-17 19:52:21.198 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.3 V.
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36219 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36219 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36212 (-172.1 uncal um), Max = 36225 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36219, posNoise = 6, negNoise = 7
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: After move to -0.172987, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: Settle wait time = 1422 ms, measure time = 110 ms (allowed 150 ms), total time = 1532 ms
17-03-17 19:52:21.198 -07 000000482 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:21.238 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 19:52:21.238 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:21.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:21.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:21.238 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:21.238 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:21.238 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:21.238 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:21.238 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:21.238 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:21.238 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:21.248 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:21.258 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:52:21.258 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:52:21.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:21.308 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:21.508 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:21.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:21.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:21.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:21.548 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:21.548 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:21.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:52:21.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:52:21.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:21.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:21.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:52:21.648 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:21.648 -07 000000424 INF: Autofocus start
17-03-17 19:52:21.648 -07 000000424 INF: MeasureProfile start
17-03-17 19:52:21.648 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:21.658 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:21.658 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:21.658 -07 000000424 INF: MeasureProfile done
17-03-17 19:52:21.658 -07 000000424 INF: X=112  Z correction [um]=0.5011052
17-03-17 19:52:21.658 -07 000000424 INF: Autofocus finished
17-03-17 19:52:21.728 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:21.858 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:21.858 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:52:21.858 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 19:52:21.858 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173001891573575. ----------
17-03-17 19:52:21.868 -07 000000610 INF: Cycle	31	Tile	18	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:21.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36411, sync = True, waitForSettling = True)
17-03-17 19:52:21.868 -07 000000610 INF: Z Motor: Moving to -0.166679 mm, started at -0.173002 mm, distance = 6.32 um
17-03-17 19:52:21.868 -07 000000610 INF: FPGA: Xmit ZDACW 36411\n [Z Motor]
17-03-17 19:52:21.868 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:52:21.878 -07 000000610 INF: FPGA: 'ZDACW 36411' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:21.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:21.878 -07 000000429 INF: FPGA: Recv ZDACR 36411
17-03-17 19:52:21.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:21.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:22.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35234
17-03-17 19:52:22.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:52:22.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.058 -07 000000438 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:52:22.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.068 -07 000000618 INF: FPGA: Recv ZSGSRD 35236
17-03-17 19:52:22.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.078 -07 000000501 INF: FPGA: Recv ZSGSRD 35239
17-03-17 19:52:22.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.088 -07 000000424 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:52:22.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:52:22.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35236
17-03-17 19:52:22.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35240
17-03-17 19:52:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:22.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:52:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:22.138 -07 000000438 INF: FPGA: Recv ZPIEZORD 31183
17-03-17 19:52:22.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:22.148 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -8.9 V.
17-03-17 19:52:22.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35237 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35237 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35233 (-165.8 uncal um), Max = 35242 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:52:22.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35237, posNoise = 5, negNoise = 4
17-03-17 19:52:22.148 -07 000000610 INF: Z Motor: After move to -0.166679, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:22.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:52:22.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:22.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:22.148 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:22.148 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:22.148 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:22.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:22.148 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:22.148 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:22.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:52:22.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:22.148 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:22.148 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:22.158 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:52:22.158 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:22.158 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:22.158 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:22.168 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:52:22.168 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:52:22.168 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:52:22.168 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:52:22.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36588 150\n [Camera]
17-03-17 19:52:22.368 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:22.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:22.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:22.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:22.778 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:22.778 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:52:22.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:22.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:22.778 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:22.898 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:22.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:22.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36588 791
17-03-17 19:52:23.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:23.158 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:52:23.158 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:52:23.158 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:23.158 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:23.158 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:52:23.268 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:52:23.268 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:52:23.268 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:23.278 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:52:23.278 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 19:52:23.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:23.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:23.308 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:23.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:23.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:23.318 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:23.318 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:23.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 19:52:23.328 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:23.328 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:23.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:52:23.508 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:23.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36588 150' command took 2 ms to send, 1330 ms to get response, and 1335 ms overall
17-03-17 19:52:23.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:52:23.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166693315250366. ------
17-03-17 19:52:23.508 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17312 mm
17-03-17 19:52:23.508 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:23.508 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:23.518 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:23.518 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:23.518 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:23.518 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37817, sync = True, waitForSettling = False)
17-03-17 19:52:23.518 -07 000000482 INF: Z Motor: Moving to -0.173115 mm, started at -0.166693 mm, distance = -6.42 um
17-03-17 19:52:23.518 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:52:23.518 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 19:52:23.528 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:23.528 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:52:23.538 -07 000000482 INF: FPGA: Xmit ZDACW 37817\n [Z Motor]
17-03-17 19:52:23.538 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:52:23.538 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:23.538 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:52:23.538 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:23.538 -07 000000569 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:52:23.548 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:23.548 -07 000000482 INF: FPGA: 'ZDACW 37817' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:52:23.558 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:23.558 -07 000000382 INF: FPGA: Recv ZDACR 37817
17-03-17 19:52:23.568 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:23.568 -07 000000482 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:52:23.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:52:23.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:52:23.698 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:23.698 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:23.708 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:52:23.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:52:23.708 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:52:23.708 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:23.718 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:23.718 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:52:23.718 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:23.718 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:52:23.918 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:52:23.918 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:52:23.948 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:23.948 -07 000000429 INF: FPGA: Recv YRDPOS 153255
17-03-17 19:52:23.958 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:23.958 -07 000000569 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:23.958 -07 000000569 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 19:52:23.958 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-17 19:52:24.908 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:24.908 -07 000000561 INF: FPGA: Recv YRDPOS 153255
17-03-17 19:52:24.918 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:24.918 -07 000000569 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:24.928 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:24.928 -07 000000569 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:24.928 -07 000000569 INF: Y Motor: Moved to 74.8315 after 1412 ms (table move)
17-03-17 19:52:24.928 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173115 mm (DAC = 37817)
17-03-17 19:52:24.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:24.938 -07 000000482 INF: FPGA: Recv ZSGSRD 36244
17-03-17 19:52:24.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:24.958 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.986717,
17-03-17 19:52:24.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:24.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36233
17-03-17 19:52:24.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:52:24.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:24.988 -07 000000431 INF: FPGA: Recv ZSGSRD 36244
17-03-17 19:52:24.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:24.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:24.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36244
17-03-17 19:52:25.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.018 -07 000000382 INF: FPGA: Recv ZSGSRD 36236
17-03-17 19:52:25.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:25.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.028 -07 000000561 INF: FPGA: Recv ZSGSRD 36240
17-03-17 19:52:25.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:25.058 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.058 -07 000000502 INF: FPGA: Recv ZSGSRD 36238
17-03-17 19:52:25.068 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:52:25.068 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.068 -07 000000431 INF: FPGA: Recv ZSGSRD 36243
17-03-17 19:52:25.078 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.078 -07 000000561 INF: FPGA: Recv ZSGSRD 36242
17-03-17 19:52:25.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36237
17-03-17 19:52:25.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.098 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:25.098 -07 000000462 INF: FPGA: Recv ZPIEZORD 32507
17-03-17 19:52:25.108 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.3 V.
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36240 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36241 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36233 (-172.2 uncal um), Max = 36244 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36240, posNoise = 4, negNoise = 7
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: After move to -0.173115, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: Settle wait time = 1417 ms, measure time = 171 ms (allowed 150 ms), total time = 1588 ms
17-03-17 19:52:25.108 -07 000000541 INF: Z Motor: Warning: Actual position measuring time = 171 ms, longer than max expected time of 150 ms
17-03-17 19:52:25.108 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:52:25.108 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:25.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:25.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:25.108 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:25.108 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:25.108 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:25.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:25.118 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:52:25.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:25.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:25.118 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:25.128 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:52:25.128 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:52:25.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:25.168 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:25.368 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:25.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:25.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:25.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:25.408 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:25.408 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:25.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:52:25.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:52:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:25.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:52:25.508 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:25.508 -07 000000502 INF: Autofocus start
17-03-17 19:52:25.508 -07 000000502 INF: MeasureProfile start
17-03-17 19:52:25.508 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:25.518 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:25.518 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:25.518 -07 000000502 INF: MeasureProfile done
17-03-17 19:52:25.518 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:52:25.518 -07 000000502 INF: Autofocus finished
17-03-17 19:52:25.718 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:25.718 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:25.728 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.173136800028552. ----------
17-03-17 19:52:25.728 -07 000000610 INF: Cycle	31	Tile	19	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:25.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36314, sync = True, waitForSettling = True)
17-03-17 19:52:25.728 -07 000000610 INF: Z Motor: Moving to -0.166235 mm, started at -0.173137 mm, distance = 6.90 um
17-03-17 19:52:25.728 -07 000000610 INF: FPGA: Xmit ZDACW 36314\n [Z Motor]
17-03-17 19:52:25.728 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:52:25.738 -07 000000610 INF: FPGA: 'ZDACW 36314' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:25.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:25.738 -07 000000541 INF: FPGA: Recv ZDACR 36314
17-03-17 19:52:25.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35167
17-03-17 19:52:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:25.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35168
17-03-17 19:52:25.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35175
17-03-17 19:52:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35166
17-03-17 19:52:25.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35169
17-03-17 19:52:25.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35174
17-03-17 19:52:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.958 -07 000000561 INF: FPGA: Recv ZSGSRD 35167
17-03-17 19:52:25.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35165
17-03-17 19:52:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.978 -07 000000561 INF: FPGA: Recv ZSGSRD 35164
17-03-17 19:52:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:25.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35165
17-03-17 19:52:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:25.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:25.998 -07 000000561 INF: FPGA: Recv ZPIEZORD 31064
17-03-17 19:52:26.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:26.008 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.1 V.
17-03-17 19:52:26.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35168 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35167 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35164 (-165.4 uncal um), Max = 35175 (-165.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:52:26.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35168, posNoise = 7, negNoise = 4
17-03-17 19:52:26.008 -07 000000610 INF: Z Motor: After move to -0.166235, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:26.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:52:26.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:26.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:26.008 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:26.008 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:26.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:26.008 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:26.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:26.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:26.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:26.008 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:26.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:26.018 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:52:26.018 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:26.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:26.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:52:26.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:26.028 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:52:26.028 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:52:26.028 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:52:26.028 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:52:26.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36491 150\n [Camera]
17-03-17 19:52:26.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:26.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:52:26.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:52:26.638 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:26.638 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:26.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 19:52:26.638 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:52:26.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:52:26.648 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:26.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:26.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 19:52:26.728 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:26.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36491 791
17-03-17 19:52:26.978 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:27.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:52:27.018 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:52:27.018 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:27.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:52:27.018 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:52:27.018 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:27.028 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:27.028 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:27.028 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:52:27.028 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:52:27.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:27.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:27.178 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:27.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:27.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:27.288 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:27.288 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:27.288 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:52:27.298 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:27.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:27.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:27.368 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:27.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36491 150' command took 2 ms to send, 1334 ms to get response, and 1339 ms overall
17-03-17 19:52:27.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:52:27.688 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:52:27.688 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:27.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:52:27.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:52:27.688 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:27.688 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:27.698 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:27.698 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 19:52:27.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:52:27.698 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:52:27.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:52:27.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:52:27.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:52:27.778 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:52:27.778 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:52:27.788 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 19:52:27.788 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:52:27.788 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:52:28.288 -07 000000462 INF: FPGA: Recv EMIN
17-03-17 19:52:28.288 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 19:52:28.288 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:52:28.288 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 19:52:28.298 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:28.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:28.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166250044612584. ------
17-03-17 19:52:28.298 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:28.298 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 19:52:28.298 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:28.308 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:52:28.308 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:28.308 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:52:28.308 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 19:52:28.308 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30652, sync = True, waitForSettling = False)
17-03-17 19:52:28.308 -07 000000569 INF: Z Motor: Moving to -0.140316 mm, started at -0.166250 mm, distance = 25.93 um
17-03-17 19:52:28.308 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:28.308 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:52:28.318 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:28.318 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:28.318 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:28.318 -07 000000431 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:52:28.318 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:52:28.328 -07 000000569 INF: FPGA: Xmit ZDACW 30652\n [Z Motor]
17-03-17 19:52:28.328 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:52:28.338 -07 000000569 INF: FPGA: 'ZDACW 30652' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:52:28.338 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:52:28.348 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:28.348 -07 000000382 INF: FPGA: Recv ZDACR 30652
17-03-17 19:52:28.358 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:28.358 -07 000000569 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:52:28.518 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:28.518 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 19:52:29.958 -07 000000502 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 19:52:29.958 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-17 19:52:29.968 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:52:29.968 -07 000000431 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:52:29.968 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-17 19:52:30.378 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.030322,
17-03-17 19:52:31.728 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:32.818 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:32.818 -07 000000424 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:52:32.828 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.828 -07 000000431 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:32.848 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:32.848 -07 000000431 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 19:52:32.848 -07 000000431 INF: Y Motor: Moved to 59.9106 after 4547 ms
17-03-17 19:52:32.858 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140316 mm (DAC = 30652)
17-03-17 19:52:32.858 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.868 -07 000000382 INF: FPGA: Recv ZSGSRD 31139
17-03-17 19:52:32.868 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:32.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.868 -07 000000502 INF: FPGA: Recv ZSGSRD 31135
17-03-17 19:52:32.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.878 -07 000000502 INF: FPGA: Recv ZSGSRD 31130
17-03-17 19:52:32.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.888 -07 000000382 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:52:32.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.898 -07 000000424 INF: FPGA: Recv ZSGSRD 31134
17-03-17 19:52:32.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.908 -07 000000431 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:52:32.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.918 -07 000000424 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:52:32.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.928 -07 000000502 INF: FPGA: Recv ZSGSRD 31132
17-03-17 19:52:32.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.938 -07 000000424 INF: FPGA: Recv ZSGSRD 31131
17-03-17 19:52:32.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:32.948 -07 000000424 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:52:32.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.958 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:32.958 -07 000000541 INF: FPGA: Recv ZPIEZORD 26753
17-03-17 19:52:32.968 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.6 V.
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31133 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31133 (-139.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31130 (-139.5 uncal um), Max = 31139 (-139.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31133, posNoise = 6, negNoise = 3
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: After move to -0.140316, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: Settle wait time = 4551 ms, measure time = 108 ms (allowed 150 ms), total time = 4659 ms
17-03-17 19:52:32.968 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:33.018 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 19:52:33.018 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:33.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:33.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:33.018 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:33.018 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:33.018 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:33.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:33.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:33.018 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:52:33.048 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 19:52:33.048 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:33.048 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:52:33.048 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:33.068 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:52:33.068 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 19:52:33.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:33.108 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:33.308 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:33.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:33.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:33.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090949280, 0x0, 559484976) start.
17-03-17 19:52:33.348 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:33.348 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:33.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:52:33.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090949280, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:52:33.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:33.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:33.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:52:33.548 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:33.548 -07 000000382 INF: Image SNR check: start
17-03-17 19:52:33.548 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:33.558 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:33.558 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:33.558 -07 000000382 INF: Image SNR check: pass  [peak (Max-Min)=63.39]
17-03-17 19:52:33.558 -07 000000382 INF: Autofocus start
17-03-17 19:52:33.558 -07 000000382 INF: MeasureProfile start
17-03-17 19:52:33.578 -07 000000382 INF: MeasureProfile done
17-03-17 19:52:33.578 -07 000000382 INF: X=14  Z correction [um]=0.04339712
17-03-17 19:52:33.578 -07 000000382 INF: Autofocus finished
17-03-17 19:52:33.758 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:33.758 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:33.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140328348620579. ----------
17-03-17 19:52:33.758 -07 000000610 INF: Cycle	31	Tile	1	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:33.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29175, sync = True, waitForSettling = True)
17-03-17 19:52:33.768 -07 000000610 INF: Z Motor: Moving to -0.133555 mm, started at -0.140328 mm, distance = 6.77 um
17-03-17 19:52:33.768 -07 000000610 INF: FPGA: Xmit ZDACW 29175\n [Z Motor]
17-03-17 19:52:33.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:52:33.778 -07 000000610 INF: FPGA: 'ZDACW 29175' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:33.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:33.778 -07 000000502 INF: FPGA: Recv ZDACR 29175
17-03-17 19:52:33.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:33.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:52:33.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:33.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.948 -07 000000382 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:52:33.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:52:33.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30078
17-03-17 19:52:33.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.978 -07 000000424 INF: FPGA: Recv ZSGSRD 30074
17-03-17 19:52:33.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.988 -07 000000424 INF: FPGA: Recv ZSGSRD 30078
17-03-17 19:52:33.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:33.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:33.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:52:34.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:34.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:34.008 -07 000000424 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:52:34.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:34.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:34.018 -07 000000541 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:52:34.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:34.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:34.028 -07 000000502 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:52:34.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:34.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:34.038 -07 000000618 INF: FPGA: Recv ZPIEZORD 25624
17-03-17 19:52:34.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:34.048 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.8 V.
17-03-17 19:52:34.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30078 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30078 (-132.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30074 (-132.7 uncal um), Max = 30082 (-132.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:52:34.048 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30078, posNoise = 4, negNoise = 4
17-03-17 19:52:34.048 -07 000000610 INF: Z Motor: After move to -0.133555, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:34.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:52:34.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:34.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:34.048 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:34.048 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:34.048 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:34.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:34.048 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:34.048 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:34.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:34.048 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:52:34.048 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:34.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:34.058 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:34.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:34.068 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:52:34.068 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:52:34.068 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:52:34.068 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:34.078 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:52:34.078 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:34.088 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:52:34.088 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:52:34.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29351 150\n [Camera]
17-03-17 19:52:34.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:34.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:34.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:34.688 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:34.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:34.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:34.698 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:34.698 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:34.698 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:52:34.698 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:34.698 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:34.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29351 791
17-03-17 19:52:35.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:35.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:52:35.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:52:35.078 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:52:35.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:35.078 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:52:35.078 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:35.078 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:35.078 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:52:35.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:35.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:52:35.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:35.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:35.228 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:35.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:35.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:35.338 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:35.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:35.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:52:35.348 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:35.348 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:35.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:52:35.428 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:35.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29351 150' command took 2 ms to send, 1330 ms to get response, and 1338 ms overall
17-03-17 19:52:35.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:35.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133550804811021. ------
17-03-17 19:52:35.428 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:35.428 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13998 mm
17-03-17 19:52:35.428 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:35.428 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:52:35.428 -07 000000482 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:52:35.428 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:35.428 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30579, sync = True, waitForSettling = False)
17-03-17 19:52:35.428 -07 000000431 INF: Z Motor: Moving to -0.139982 mm, started at -0.133551 mm, distance = -6.43 um
17-03-17 19:52:35.438 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:35.438 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:35.438 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:52:35.448 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:52:35.448 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:35.448 -07 000000482 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:35.448 -07 000000482 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:35.448 -07 000000482 INF: Y Motor: Moving 1331 steps2
17-03-17 19:52:35.458 -07 000000431 INF: FPGA: Xmit ZDACW 30579\n [Z Motor]
17-03-17 19:52:35.458 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:52:35.468 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:35.468 -07 000000431 INF: FPGA: 'ZDACW 30579' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:52:35.478 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:35.478 -07 000000569 INF: FPGA: Recv ZDACR 30579
17-03-17 19:52:35.488 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:35.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:52:35.648 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:35.648 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:52:35.738 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.038479,
17-03-17 19:52:35.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:52:35.738 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:52:35.738 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:35.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:52:35.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:52:35.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:35.738 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:35.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:35.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 19:52:35.748 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:52:35.838 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:52:35.838 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:52:35.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:35.868 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:52:35.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:35.878 -07 000000482 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:35.878 -07 000000482 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:52:35.878 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 19:52:36.728 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:36.828 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:36.828 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:52:36.838 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:36.838 -07 000000482 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:36.858 -07 000000482 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:36.858 -07 000000482 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:52:36.858 -07 000000482 INF: Y Motor: Moved to 60.7334 after 1423 ms (table move)
17-03-17 19:52:36.858 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139982 mm (DAC = 30579)
17-03-17 19:52:36.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.868 -07 000000382 INF: FPGA: Recv ZSGSRD 31085
17-03-17 19:52:36.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 8 ms overall
17-03-17 19:52:36.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.868 -07 000000593 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:52:36.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:36.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.878 -07 000000593 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:52:36.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.888 -07 000000618 INF: FPGA: Recv ZSGSRD 31081
17-03-17 19:52:36.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.898 -07 000000431 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:52:36.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.908 -07 000000482 INF: FPGA: Recv ZSGSRD 31084
17-03-17 19:52:36.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.918 -07 000000618 INF: FPGA: Recv ZSGSRD 31083
17-03-17 19:52:36.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.928 -07 000000438 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:52:36.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.938 -07 000000593 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:52:36.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:36.948 -07 000000618 INF: FPGA: Recv ZSGSRD 31081
17-03-17 19:52:36.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.958 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:36.958 -07 000000438 INF: FPGA: Recv ZPIEZORD 26997
17-03-17 19:52:36.968 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.666 V. Piezo Error = -9.0 V.
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31082 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31082 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31074 (-139.1 uncal um), Max = 31088 (-139.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31082, posNoise = 6, negNoise = 8
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: After move to -0.139982, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: Settle wait time = 1426 ms, measure time = 105 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:52:36.968 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:37.018 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 19:52:37.018 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:37.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:37.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:37.018 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:37.018 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:37.018 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:37.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:37.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:52:37.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:37.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:37.028 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:37.038 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:52:37.038 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:52:37.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:37.078 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:37.278 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:37.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:37.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:37.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:52:37.318 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:37.318 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:37.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:52:37.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:52:37.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:37.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:37.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:52:37.518 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:37.518 -07 000000438 INF: Autofocus start
17-03-17 19:52:37.518 -07 000000438 INF: MeasureProfile start
17-03-17 19:52:37.518 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:37.528 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:37.528 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:37.528 -07 000000438 INF: MeasureProfile done
17-03-17 19:52:37.528 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:52:37.528 -07 000000438 INF: Autofocus finished
17-03-17 19:52:37.728 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:37.728 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:37.728 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140000713801349. ----------
17-03-17 19:52:37.728 -07 000000610 INF: Cycle	31	Tile	2	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:37.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29103, sync = True, waitForSettling = True)
17-03-17 19:52:37.738 -07 000000610 INF: Z Motor: Moving to -0.133225 mm, started at -0.140001 mm, distance = 6.78 um
17-03-17 19:52:37.738 -07 000000610 INF: FPGA: Xmit ZDACW 29103\n [Z Motor]
17-03-17 19:52:37.738 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:52:37.748 -07 000000610 INF: FPGA: 'ZDACW 29103' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:37.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:37.748 -07 000000482 INF: FPGA: Recv ZDACR 29103
17-03-17 19:52:37.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.908 -07 000000593 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:52:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.918 -07 000000438 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:52:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.928 -07 000000593 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:52:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:52:37.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:52:37.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.958 -07 000000547 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:52:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:52:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.978 -07 000000593 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:52:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:52:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:37.998 -07 000000593 INF: FPGA: Recv ZSGSRD 30028
17-03-17 19:52:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:38.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:38.008 -07 000000547 INF: FPGA: Recv ZPIEZORD 25619
17-03-17 19:52:38.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:38.018 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.7 V.
17-03-17 19:52:38.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30029 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30029 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30032 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:52:38.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30029, posNoise = 3, negNoise = 5
17-03-17 19:52:38.018 -07 000000610 INF: Z Motor: After move to -0.133225, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:38.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:52:38.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:38.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:38.018 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:38.018 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:38.018 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:38.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:38.018 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:38.018 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:38.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:52:38.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:38.018 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:38.018 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:38.028 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:38.028 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:38.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:52:38.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:38.038 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:38.038 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:52:38.038 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:38.038 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:52:38.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29280 150\n [Camera]
17-03-17 19:52:38.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:38.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:38.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:38.648 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:38.648 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:38.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:38.658 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:38.658 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:38.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:52:38.658 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:38.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:38.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29280 791
17-03-17 19:52:38.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:39.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:52:39.048 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:52:39.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:39.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:39.058 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:52:39.058 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:52:39.058 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:52:39.058 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:39.058 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:39.068 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:52:39.188 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:39.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:39.188 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:39.188 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:39.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 19:52:39.188 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:39.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:39.188 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:39.188 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:39.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 19:52:39.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:39.378 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:39.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29280 150' command took 2 ms to send, 1326 ms to get response, and 1336 ms overall
17-03-17 19:52:39.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:39.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133236018416075. ------
17-03-17 19:52:39.388 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:39.388 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.14002 mm
17-03-17 19:52:39.388 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:39.388 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:52:39.388 -07 000000438 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:52:39.388 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:39.388 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30587, sync = True, waitForSettling = False)
17-03-17 19:52:39.388 -07 000000541 INF: Z Motor: Moving to -0.140018 mm, started at -0.133236 mm, distance = -6.78 um
17-03-17 19:52:39.498 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 19:52:39.498 -07 000000541 INF: FPGA: Xmit ZDACW 30587\n [Z Motor]
17-03-17 19:52:39.498 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:52:39.508 -07 000000541 INF: FPGA: 'ZDACW 30587' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 19:52:39.508 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:39.508 -07 000000431 INF: FPGA: Recv ZDACR 30587
17-03-17 19:52:39.518 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:39.518 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:39.518 -07 000000541 INF: Z Motor: MoveAbsStepped took 123 ms (did NOT wait for settling yet))
17-03-17 19:52:39.518 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:52:39.528 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-17 19:52:39.528 -07 000000438 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:39.528 -07 000000438 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:39.528 -07 000000438 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:52:39.528 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:39.538 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:39.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:52:39.588 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:52:39.588 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:39.588 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:52:39.588 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:52:39.588 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:39.588 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:39.598 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:52:39.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:52:39.598 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:52:39.728 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:39.728 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 226 ms overall
17-03-17 19:52:39.908 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:52:39.908 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:52:39.948 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:39.948 -07 000000482 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:52:39.958 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:39.958 -07 000000438 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:39.958 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:52:39.958 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-17 19:52:40.908 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:40.908 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:52:40.918 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:40.918 -07 000000438 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:40.938 -07 000000438 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:40.938 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:40.938 -07 000000438 INF: Y Motor: Moved to 61.5640 after 1547 ms (table move)
17-03-17 19:52:40.938 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140018 mm (DAC = 30587)
17-03-17 19:52:40.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.938 -07 000000429 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:52:40.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:40.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.948 -07 000000429 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:52:40.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:40.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.958 -07 000000482 INF: FPGA: Recv ZSGSRD 31084
17-03-17 19:52:40.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:40.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.968 -07 000000424 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:52:40.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:40.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.978 -07 000000429 INF: FPGA: Recv ZSGSRD 31089
17-03-17 19:52:40.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:40.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.988 -07 000000429 INF: FPGA: Recv ZSGSRD 31096
17-03-17 19:52:40.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:40.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:40.998 -07 000000424 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:52:41.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.008 -07 000000424 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:52:41.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.018 -07 000000424 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:52:41.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.028 -07 000000424 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:52:41.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.038 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:41.038 -07 000000561 INF: FPGA: Recv ZPIEZORD 27057
17-03-17 19:52:41.048 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.9 V.
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31086 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31086 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31078 (-139.2 uncal um), Max = 31096 (-139.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31086, posNoise = 10, negNoise = 8
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: After move to -0.140018, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: Settle wait time = 1549 ms, measure time = 105 ms (allowed 150 ms), total time = 1654 ms
17-03-17 19:52:41.048 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:41.098 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 19:52:41.098 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:41.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:41.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:41.098 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:41.098 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:41.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:41.108 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:41.108 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:41.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:41.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:41.108 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:41.118 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.007176,
17-03-17 19:52:41.118 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:52:41.118 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:52:41.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:41.168 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:41.368 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:41.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:41.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:41.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:41.408 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:41.408 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:41.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 290 ms overall
17-03-17 19:52:41.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 19:52:41.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:52:41.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:52:41.508 -07 000000438 INF: Autofocus start
17-03-17 19:52:41.508 -07 000000438 INF: MeasureProfile start
17-03-17 19:52:41.508 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:41.508 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:41.518 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:41.518 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:41.518 -07 000000438 INF: MeasureProfile done
17-03-17 19:52:41.518 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:52:41.518 -07 000000438 INF: Autofocus finished
17-03-17 19:52:41.718 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:41.718 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:41.718 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.140026410649916. ----------
17-03-17 19:52:41.718 -07 000000610 INF: Cycle	31	Tile	3	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:41.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29094, sync = True, waitForSettling = True)
17-03-17 19:52:41.728 -07 000000610 INF: Z Motor: Moving to -0.133184 mm, started at -0.140026 mm, distance = 6.84 um
17-03-17 19:52:41.728 -07 000000610 INF: FPGA: Xmit ZDACW 29094\n [Z Motor]
17-03-17 19:52:41.728 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:52:41.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:41.738 -07 000000610 INF: FPGA: 'ZDACW 29094' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:41.738 -07 000000429 INF: FPGA: Recv ZDACR 29094
17-03-17 19:52:41.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.898 -07 000000438 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:52:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.908 -07 000000541 INF: FPGA: Recv ZSGSRD 30028
17-03-17 19:52:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.918 -07 000000541 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:52:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:52:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:52:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.948 -07 000000429 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:52:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:52:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.968 -07 000000541 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:52:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.978 -07 000000438 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:52:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:41.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:52:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:41.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:41.998 -07 000000438 INF: FPGA: Recv ZPIEZORD 25672
17-03-17 19:52:42.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:42.008 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.6 V.
17-03-17 19:52:42.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30020 (-132.4 uncal um), Max = 30028 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:52:42.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 5, negNoise = 3
17-03-17 19:52:42.008 -07 000000610 INF: Z Motor: After move to -0.133184, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:42.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:52:42.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:42.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:42.008 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:42.008 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:42.008 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:42.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:42.008 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:42.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:42.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:42.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:42.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:42.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:42.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:42.008 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:42.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:52:42.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:42.018 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:52:42.018 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:52:42.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:52:42.018 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:52:42.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29271 150\n [Camera]
17-03-17 19:52:42.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:42.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:42.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:42.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:42.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:42.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:42.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:42.638 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:42.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:52:42.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:42.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:52:42.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29271 791
17-03-17 19:52:42.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:43.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 19:52:43.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 19:52:43.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:43.018 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:43.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:52:43.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:52:43.018 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:43.018 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:52:43.018 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:43.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:52:43.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:43.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:43.168 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:43.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:43.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:43.178 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:43.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:43.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 19:52:43.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:43.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:43.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:52:43.368 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:43.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29271 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 19:52:43.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:43.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133197473143224. ------
17-03-17 19:52:43.368 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13945 mm
17-03-17 19:52:43.368 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:43.368 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:43.378 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:52:43.378 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:52:43.378 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:43.378 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:43.378 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:52:43.378 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30462, sync = True, waitForSettling = False)
17-03-17 19:52:43.378 -07 000000431 INF: Z Motor: Moving to -0.139446 mm, started at -0.133197 mm, distance = -6.25 um
17-03-17 19:52:43.378 -07 000000618 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:52:43.388 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:43.388 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:43.388 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:43.388 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:43.388 -07 000000501 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:52:43.398 -07 000000431 INF: FPGA: Xmit ZDACW 30462\n [Z Motor]
17-03-17 19:52:43.398 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:52:43.408 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:43.408 -07 000000431 INF: FPGA: 'ZDACW 30462' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:52:43.418 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:43.418 -07 000000382 INF: FPGA: Recv ZDACR 30462
17-03-17 19:52:43.428 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:43.428 -07 000000431 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:52:43.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:52:43.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:52:43.568 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:43.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:52:43.568 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:52:43.568 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:43.568 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:43.568 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:52:43.568 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:43.578 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:52:43.588 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:43.588 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:52:43.778 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:52:43.778 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:52:43.818 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:43.818 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:52:43.828 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:43.828 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:43.828 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:52:43.828 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 19:52:44.778 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:44.778 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:52:44.788 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.788 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:44.798 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:44.808 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:44.808 -07 000000501 INF: Y Motor: Moved to 62.3955 after 1429 ms (table move)
17-03-17 19:52:44.808 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139446 mm (DAC = 30462)
17-03-17 19:52:44.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.808 -07 000000482 INF: FPGA: Recv ZSGSRD 31002
17-03-17 19:52:44.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:44.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.818 -07 000000482 INF: FPGA: Recv ZSGSRD 30997
17-03-17 19:52:44.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.828 -07 000000438 INF: FPGA: Recv ZSGSRD 30991
17-03-17 19:52:44.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:44.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30998
17-03-17 19:52:44.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30998
17-03-17 19:52:44.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.858 -07 000000438 INF: FPGA: Recv ZSGSRD 30991
17-03-17 19:52:44.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30994
17-03-17 19:52:44.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.878 -07 000000478 INF: FPGA: Recv ZSGSRD 30998
17-03-17 19:52:44.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.888 -07 000000478 INF: FPGA: Recv ZSGSRD 30996
17-03-17 19:52:44.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:44.898 -07 000000431 INF: FPGA: Recv ZSGSRD 31001
17-03-17 19:52:44.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.908 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:44.908 -07 000000431 INF: FPGA: Recv ZPIEZORD 26989
17-03-17 19:52:44.918 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -8.8 V.
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30997 (-138.7 uncal um), Error = 0.8 uncal um, Median = 30998 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30991 (-138.6 uncal um), Max = 31002 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30997, posNoise = 5, negNoise = 6
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: After move to -0.139446, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:52:44.918 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:44.968 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:52:44.968 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:44.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:44.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:44.968 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:44.968 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:44.968 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:44.968 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:44.968 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:44.968 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:44.978 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:44.978 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:44.978 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:52:44.978 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:52:44.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:45.028 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:45.228 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:45.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:45.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:45.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:52:45.268 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:45.268 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:45.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:52:45.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:52:45.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:45.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:45.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:52:45.368 -07 000000618 INF: Autofocus start
17-03-17 19:52:45.368 -07 000000618 INF: MeasureProfile start
17-03-17 19:52:45.368 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:45.368 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:45.378 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:45.378 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:45.378 -07 000000618 INF: MeasureProfile done
17-03-17 19:52:45.378 -07 000000618 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:52:45.378 -07 000000618 INF: Autofocus finished
17-03-17 19:52:45.578 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:45.578 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:45.578 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139454655769299. ----------
17-03-17 19:52:45.588 -07 000000610 INF: Cycle	31	Tile	4	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:45.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28940, sync = True, waitForSettling = True)
17-03-17 19:52:45.588 -07 000000610 INF: Z Motor: Moving to -0.132479 mm, started at -0.139455 mm, distance = 6.98 um
17-03-17 19:52:45.588 -07 000000610 INF: FPGA: Xmit ZDACW 28940\n [Z Motor]
17-03-17 19:52:45.588 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:52:45.598 -07 000000610 INF: FPGA: 'ZDACW 28940' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:45.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:45.598 -07 000000382 INF: FPGA: Recv ZDACR 28940
17-03-17 19:52:45.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:45.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29922
17-03-17 19:52:45.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:45.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.768 -07 000000547 INF: FPGA: Recv ZSGSRD 29911
17-03-17 19:52:45.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29908
17-03-17 19:52:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-17 19:52:45.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29914
17-03-17 19:52:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29914
17-03-17 19:52:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.818 -07 000000569 INF: FPGA: Recv ZSGSRD 29907
17-03-17 19:52:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.828 -07 000000569 INF: FPGA: Recv ZSGSRD 29919
17-03-17 19:52:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29918
17-03-17 19:52:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:45.848 -07 000000382 INF: FPGA: Recv ZSGSRD 29909
17-03-17 19:52:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:45.858 -07 000000501 INF: FPGA: Recv ZPIEZORD 25576
17-03-17 19:52:45.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:45.868 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.5 V.
17-03-17 19:52:45.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29913 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29913 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29907 (-131.7 uncal um), Max = 29922 (-131.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:52:45.868 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29913, posNoise = 9, negNoise = 6
17-03-17 19:52:45.868 -07 000000610 INF: Z Motor: After move to -0.132479, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:45.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:52:45.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:45.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:45.868 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:45.868 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:45.868 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:45.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:45.868 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:45.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:45.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:45.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:45.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:45.868 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:45.878 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:45.878 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:45.878 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:52:45.878 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:45.888 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:52:45.888 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:45.888 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:45.888 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:52:45.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29116 150\n [Camera]
17-03-17 19:52:46.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:46.488 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.009895,
17-03-17 19:52:46.498 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:46.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:46.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:46.508 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:46.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:52:46.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:46.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:46.508 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:46.508 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:46.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:52:46.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 791
17-03-17 19:52:46.728 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:46.848 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:46.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:52:46.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:52:46.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:46.898 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:52:46.898 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:52:46.898 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:46.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:46.898 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:52:46.898 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:46.908 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:52:47.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:47.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:47.048 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:47.048 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:47.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:52:47.048 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:47.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:47.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:47.048 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:47.048 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:52:47.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:47.228 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:47.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29116 150' command took 2 ms to send, 1329 ms to get response, and 1335 ms overall
17-03-17 19:52:47.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:47.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132490809807631. ------
17-03-17 19:52:47.238 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:47.238 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13901 mm
17-03-17 19:52:47.238 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:47.358 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:47.358 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 19:52:47.358 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:47.358 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:52:47.358 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:52:47.358 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30366, sync = True, waitForSettling = False)
17-03-17 19:52:47.358 -07 000000541 INF: Z Motor: Moving to -0.139007 mm, started at -0.132491 mm, distance = -6.52 um
17-03-17 19:52:47.368 -07 000000541 INF: FPGA: Xmit ZDACW 30366\n [Z Motor]
17-03-17 19:52:47.368 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:52:47.378 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:47.378 -07 000000541 INF: FPGA: 'ZDACW 30366' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:52:47.378 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:52:47.388 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:52:47.388 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:47.388 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:47.388 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:52:47.388 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:47.388 -07 000000424 INF: FPGA: Recv ZDACR 30366
17-03-17 19:52:47.398 -07 000000541 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:47.398 -07 000000541 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:52:47.398 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:47.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:52:47.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:52:47.438 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:47.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:52:47.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:52:47.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:47.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:47.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:52:47.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:52:47.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:52:47.558 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:47.558 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:52:47.768 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:52:47.768 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:52:47.808 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:47.808 -07 000000438 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:52:47.818 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:47.818 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:47.818 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:52:47.818 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 19:52:48.768 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:48.768 -07 000000541 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:52:48.778 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:48.778 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:48.798 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:48.798 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:48.798 -07 000000478 INF: Y Motor: Moved to 63.2241 after 1437 ms (table move)
17-03-17 19:52:48.798 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139007 mm (DAC = 30366)
17-03-17 19:52:48.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.798 -07 000000561 INF: FPGA: Recv ZSGSRD 30928
17-03-17 19:52:48.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:48.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30921
17-03-17 19:52:48.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.818 -07 000000561 INF: FPGA: Recv ZSGSRD 30931
17-03-17 19:52:48.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30936
17-03-17 19:52:48.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.838 -07 000000478 INF: FPGA: Recv ZSGSRD 30935
17-03-17 19:52:48.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.848 -07 000000382 INF: FPGA: Recv ZSGSRD 30934
17-03-17 19:52:48.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30929
17-03-17 19:52:48.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.868 -07 000000561 INF: FPGA: Recv ZSGSRD 30931
17-03-17 19:52:48.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.878 -07 000000478 INF: FPGA: Recv ZSGSRD 30926
17-03-17 19:52:48.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:48.888 -07 000000431 INF: FPGA: Recv ZSGSRD 30922
17-03-17 19:52:48.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:48.898 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:48.898 -07 000000541 INF: FPGA: Recv ZPIEZORD 26925
17-03-17 19:52:48.908 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.8 V.
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30929 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30930 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30921 (-138.2 uncal um), Max = 30936 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30929, posNoise = 7, negNoise = 8
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: After move to -0.139007, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:52:48.908 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:48.958 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 19:52:48.958 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:48.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:48.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:48.958 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:48.958 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:48.958 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:48.958 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:48.958 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:48.958 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:48.958 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:48.968 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:48.978 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:52:48.978 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:52:48.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:49.028 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:49.228 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:49.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:49.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:49.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:49.268 -07 000000482 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:52:49.268 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:49.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 19:52:49.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:52:49.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:49.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:49.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:52:49.368 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:49.368 -07 000000618 INF: Autofocus start
17-03-17 19:52:49.368 -07 000000618 INF: MeasureProfile start
17-03-17 19:52:49.368 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:49.378 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:49.378 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:49.378 -07 000000618 INF: MeasureProfile done
17-03-17 19:52:49.378 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:52:49.378 -07 000000618 INF: Autofocus finished
17-03-17 19:52:49.578 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:49.578 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:52:49.578 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13901780934366. ----------
17-03-17 19:52:49.578 -07 000000610 INF: Cycle	31	Tile	5	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:49.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28891, sync = True, waitForSettling = True)
17-03-17 19:52:49.588 -07 000000610 INF: Z Motor: Moving to -0.132255 mm, started at -0.139018 mm, distance = 6.76 um
17-03-17 19:52:49.588 -07 000000610 INF: FPGA: Xmit ZDACW 28891\n [Z Motor]
17-03-17 19:52:49.588 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:52:49.598 -07 000000610 INF: FPGA: 'ZDACW 28891' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:49.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:49.598 -07 000000429 INF: FPGA: Recv ZDACR 28891
17-03-17 19:52:49.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:52:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29871
17-03-17 19:52:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.778 -07 000000429 INF: FPGA: Recv ZSGSRD 29872
17-03-17 19:52:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.788 -07 000000429 INF: FPGA: Recv ZSGSRD 29876
17-03-17 19:52:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29876
17-03-17 19:52:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.808 -07 000000438 INF: FPGA: Recv ZSGSRD 29880
17-03-17 19:52:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.818 -07 000000431 INF: FPGA: Recv ZSGSRD 29875
17-03-17 19:52:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:52:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:52:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:49.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29877
17-03-17 19:52:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:49.858 -07 000000438 INF: FPGA: Recv ZPIEZORD 25561
17-03-17 19:52:49.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:49.868 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 19:52:49.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29877 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:52:49.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29877, posNoise = 6, negNoise = 6
17-03-17 19:52:49.868 -07 000000610 INF: Z Motor: After move to -0.132255, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:49.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:52:49.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:49.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:49.868 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:49.868 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:49.868 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:49.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:49.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:49.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:49.868 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:49.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:49.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:49.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:49.878 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:49.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:49.878 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:52:49.878 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:49.878 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:52:49.878 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:52:49.888 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:52:49.888 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:49.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29067 150\n [Camera]
17-03-17 19:52:50.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:50.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:50.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:50.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:50.508 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:50.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:50.508 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:50.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:50.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:52:50.518 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:50.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 19:52:50.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29067 791
17-03-17 19:52:50.848 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:50.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:52:50.888 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:52:50.888 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:50.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:52:50.888 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:52:50.888 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:50.898 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:52:50.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:52:50.898 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:50.908 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:52:51.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:52:51.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:52:51.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:51.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:52:51.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:52:51.048 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:51.058 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:51.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:52:51.058 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:51.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:52:51.238 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:52:51.238 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:51.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29067 150' command took 2 ms to send, 1332 ms to get response, and 1336 ms overall
17-03-17 19:52:51.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:51.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132259538170527. ------
17-03-17 19:52:51.358 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:51.358 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13873 mm
17-03-17 19:52:51.358 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:51.368 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:52:51.368 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:52:51.368 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:51.368 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:52:51.368 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:51.368 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30306, sync = True, waitForSettling = False)
17-03-17 19:52:51.368 -07 000000502 INF: Z Motor: Moving to -0.138732 mm, started at -0.132260 mm, distance = -6.47 um
17-03-17 19:52:51.368 -07 000000501 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:52:51.378 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:51.378 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:51.378 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:51.378 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:51.378 -07 000000431 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:52:51.388 -07 000000502 INF: FPGA: Xmit ZDACW 30306\n [Z Motor]
17-03-17 19:52:51.388 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:52:51.398 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:51.398 -07 000000502 INF: FPGA: 'ZDACW 30306' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:52:51.408 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:51.408 -07 000000501 INF: FPGA: Recv ZDACR 30306
17-03-17 19:52:51.418 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:52:51.418 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:52:51.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:52:51.438 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:52:51.438 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:51.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:52:51.448 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:52:51.448 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:51.448 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:51.448 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:52:51.448 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:52:51.458 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:52:51.578 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:51.578 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 19:52:51.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:51.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:51.768 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:52:51.768 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:52:51.808 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:51.808 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:52:51.818 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:52:51.818 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:51.818 -07 000000431 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:52:51.818 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 19:52:51.848 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.012614,
17-03-17 19:52:52.768 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:52.768 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:52:52.778 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:52.778 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:52.788 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:52.798 -07 000000431 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:52.798 -07 000000431 INF: Y Motor: Moved to 64.0571 after 1429 ms (table move)
17-03-17 19:52:52.798 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138732 mm (DAC = 30306)
17-03-17 19:52:52.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:52.798 -07 000000541 INF: FPGA: Recv ZSGSRD 30885
17-03-17 19:52:52.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:52.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:52.808 -07 000000482 INF: FPGA: Recv ZSGSRD 30884
17-03-17 19:52:52.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:52.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:52:53.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 920 ms to get response, and 930 ms overall
17-03-17 19:52:53.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.748 -07 000000382 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:52:53.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.758 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.758 -07 000000502 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:52:53.768 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.768 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.768 -07 000000431 INF: FPGA: Recv ZSGSRD 30885
17-03-17 19:52:53.778 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.778 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.778 -07 000000482 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:52:53.788 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.788 -07 000000431 INF: FPGA: Recv ZSGSRD 30884
17-03-17 19:52:53.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.798 -07 000000382 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:52:53.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:53.808 -07 000000502 INF: FPGA: Recv ZSGSRD 30883
17-03-17 19:52:53.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.818 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:53.818 -07 000000482 INF: FPGA: Recv ZPIEZORD 26880
17-03-17 19:52:53.828 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -8.8 V.
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30886 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30886 (-137.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30883 (-137.9 uncal um), Max = 30888 (-138.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30886, posNoise = 2, negNoise = 3
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: After move to -0.138732, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: Settle wait time = 1433 ms, measure time = 1026 ms (allowed 150 ms), total time = 2459 ms
17-03-17 19:52:53.828 -07 000000429 INF: Z Motor: Warning: Actual position measuring time = 1026 ms, longer than max expected time of 150 ms
17-03-17 19:52:53.828 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2463 ms
17-03-17 19:52:53.828 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:53.828 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:53.828 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:53.828 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:53.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:53.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:53.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:53.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:53.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:53.848 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:52:53.848 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:52:53.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:53.888 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:54.088 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:54.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:54.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:54.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:52:54.128 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:54.128 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:54.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:52:54.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:52:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:52:54.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:52:54.228 -07 000000382 INF: Autofocus start
17-03-17 19:52:54.228 -07 000000382 INF: MeasureProfile start
17-03-17 19:52:54.228 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:54.228 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:54.238 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:52:54.238 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:54.238 -07 000000382 INF: MeasureProfile done
17-03-17 19:52:54.238 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:52:54.238 -07 000000382 INF: Autofocus finished
17-03-17 19:52:54.438 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:54.438 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:54.438 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138741568221564. ----------
17-03-17 19:52:54.438 -07 000000610 INF: Cycle	31	Tile	6	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:54.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-17 19:52:54.448 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138742 mm, distance = 6.69 um
17-03-17 19:52:54.448 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-17 19:52:54.448 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:52:54.458 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:54.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:54.458 -07 000000593 INF: FPGA: Recv ZDACR 28847
17-03-17 19:52:54.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.618 -07 000000438 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:52:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.628 -07 000000431 INF: FPGA: Recv ZSGSRD 29841
17-03-17 19:52:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:52:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29841
17-03-17 19:52:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.658 -07 000000502 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:52:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:52:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.678 -07 000000431 INF: FPGA: Recv ZSGSRD 29842
17-03-17 19:52:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.688 -07 000000382 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:52:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.698 -07 000000431 INF: FPGA: Recv ZSGSRD 29842
17-03-17 19:52:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:54.708 -07 000000478 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:52:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:54.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 25506
17-03-17 19:52:54.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:54.728 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.5 V.
17-03-17 19:52:54.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29845 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:52:54.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 5, negNoise = 4
17-03-17 19:52:54.728 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:54.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:52:54.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:54.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:54.728 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:54.728 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:54.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:54.728 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:54.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:54.728 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:54.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:54.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:54.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:52:54.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:54.738 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:54.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:54.738 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:52:54.738 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:54.748 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:52:54.748 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:52:54.748 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:52:54.748 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:52:54.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29023 150\n [Camera]
17-03-17 19:52:54.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:55.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:55.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:55.358 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:55.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:55.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:55.358 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:55.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:55.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:52:55.358 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:55.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:52:55.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 791
17-03-17 19:52:55.698 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:55.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:52:55.758 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:52:55.758 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:55.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:52:55.758 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:52:55.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:55.768 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:52:55.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:55.768 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:52:55.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:52:55.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:55.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:55.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:55.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:55.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:55.898 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:55.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:52:55.898 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:55.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:55.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:52:56.088 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:52:56.088 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:56.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29023 150' command took 2 ms to send, 1331 ms to get response, and 1336 ms overall
17-03-17 19:52:56.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:52:56.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132053963381991. ------
17-03-17 19:52:56.088 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:56.088 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13864 mm
17-03-17 19:52:56.088 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:52:56.098 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:56.098 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:52:56.098 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30286, sync = True, waitForSettling = False)
17-03-17 19:52:56.098 -07 000000593 INF: Z Motor: Moving to -0.138640 mm, started at -0.132054 mm, distance = -6.59 um
17-03-17 19:52:56.098 -07 000000593 INF: FPGA: Xmit ZDACW 30286\n [Z Motor]
17-03-17 19:52:56.098 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:52:56.098 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:52:56.098 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:52:56.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:56.108 -07 000000593 INF: FPGA: 'ZDACW 30286' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:56.108 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:52:56.118 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:52:56.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:52:56.118 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:56.118 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:52:56.118 -07 000000382 INF: Y Motor: Moving 1337 steps-11
17-03-17 19:52:56.128 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:56.128 -07 000000424 INF: FPGA: Recv ZDACR 30286
17-03-17 19:52:56.138 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:52:56.138 -07 000000593 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:52:56.138 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:52:56.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:52:56.298 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:52:56.298 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:56.298 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:52:56.298 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:52:56.298 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:56.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:56.308 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:52:56.308 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:56.308 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:52:56.318 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:52:56.318 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:52:56.508 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:52:56.508 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:52:56.548 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:56.548 -07 000000547 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:52:56.558 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:56.558 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:56.558 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:52:56.558 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 19:52:56.728 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:52:56.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:52:57.218 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.993549,
17-03-17 19:52:57.508 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:52:57.508 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:52:57.518 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.518 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:52:57.538 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:52:57.538 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:52:57.538 -07 000000382 INF: Y Motor: Moved to 64.8789 after 1442 ms (table move)
17-03-17 19:52:57.538 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138640 mm (DAC = 30286)
17-03-17 19:52:57.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.558 -07 000000541 INF: FPGA: Recv ZSGSRD 30865
17-03-17 19:52:57.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:52:57.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30870
17-03-17 19:52:57.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.598 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.598 -07 000000561 INF: FPGA: Recv ZSGSRD 30868
17-03-17 19:52:57.608 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:52:57.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.608 -07 000000541 INF: FPGA: Recv ZSGSRD 30871
17-03-17 19:52:57.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.618 -07 000000593 INF: FPGA: Recv ZSGSRD 30872
17-03-17 19:52:57.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.628 -07 000000541 INF: FPGA: Recv ZSGSRD 30871
17-03-17 19:52:57.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.638 -07 000000618 INF: FPGA: Recv ZSGSRD 30869
17-03-17 19:52:57.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.648 -07 000000429 INF: FPGA: Recv ZSGSRD 30881
17-03-17 19:52:57.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.658 -07 000000462 INF: FPGA: Recv ZSGSRD 30878
17-03-17 19:52:57.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:57.668 -07 000000429 INF: FPGA: Recv ZSGSRD 30864
17-03-17 19:52:57.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.678 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:57.678 -07 000000478 INF: FPGA: Recv ZPIEZORD 26863
17-03-17 19:52:57.688 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.8 V.
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30871 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30870 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30864 (-137.8 uncal um), Max = 30881 (-137.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30871, posNoise = 10, negNoise = 7
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: After move to -0.138640, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: Settle wait time = 1446 ms, measure time = 142 ms (allowed 150 ms), total time = 1588 ms
17-03-17 19:52:57.688 -07 000000502 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-17 19:52:57.698 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:52:57.698 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:52:57.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:57.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:57.698 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:57.698 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:57.708 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:52:57.708 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:57.708 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:52:57.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:52:57.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:52:57.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:52:57.718 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:52:57.718 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:52:57.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:52:57.768 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:52:57.968 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:52:57.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:52:57.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:52:57.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:52:57.998 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:52:58.008 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:52:58.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:52:58.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:52:58.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:58.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:52:58.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:52:58.108 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:52:58.108 -07 000000502 INF: Autofocus start
17-03-17 19:52:58.108 -07 000000502 INF: MeasureProfile start
17-03-17 19:52:58.108 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:52:58.118 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:52:58.118 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:52:58.118 -07 000000502 INF: MeasureProfile done
17-03-17 19:52:58.118 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:52:58.118 -07 000000502 INF: Autofocus finished
17-03-17 19:52:58.318 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:52:58.318 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:52:58.318 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138645205039438. ----------
17-03-17 19:52:58.318 -07 000000610 INF: Cycle	31	Tile	7	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:52:58.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28793, sync = True, waitForSettling = True)
17-03-17 19:52:58.328 -07 000000610 INF: Z Motor: Moving to -0.131806 mm, started at -0.138645 mm, distance = 6.84 um
17-03-17 19:52:58.328 -07 000000610 INF: FPGA: Xmit ZDACW 28793\n [Z Motor]
17-03-17 19:52:58.328 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:52:58.338 -07 000000610 INF: FPGA: 'ZDACW 28793' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:58.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:52:58.338 -07 000000478 INF: FPGA: Recv ZDACR 28793
17-03-17 19:52:58.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:52:58.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.498 -07 000000478 INF: FPGA: Recv ZSGSRD 29808
17-03-17 19:52:58.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:52:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.508 -07 000000502 INF: FPGA: Recv ZSGSRD 29807
17-03-17 19:52:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.518 -07 000000478 INF: FPGA: Recv ZSGSRD 29807
17-03-17 19:52:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29811
17-03-17 19:52:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29812
17-03-17 19:52:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:52:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29805
17-03-17 19:52:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.558 -07 000000502 INF: FPGA: Recv ZSGSRD 29806
17-03-17 19:52:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29809
17-03-17 19:52:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.578 -07 000000502 INF: FPGA: Recv ZSGSRD 29811
17-03-17 19:52:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:52:58.588 -07 000000502 INF: FPGA: Recv ZSGSRD 29805
17-03-17 19:52:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:52:58.598 -07 000000462 INF: FPGA: Recv ZPIEZORD 25467
17-03-17 19:52:58.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:52:58.608 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.5 V.
17-03-17 19:52:58.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29805 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:52:58.608 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 4, negNoise = 3
17-03-17 19:52:58.608 -07 000000610 INF: Z Motor: After move to -0.131806, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:52:58.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:52:58.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:52:58.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:52:58.608 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:52:58.608 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:52:58.608 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:52:58.608 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:52:58.608 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:52:58.608 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:52:58.608 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:52:58.608 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:52:58.608 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:52:58.608 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:52:58.608 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:52:58.608 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:52:58.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:52:58.618 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:52:58.628 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:52:58.628 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:52:58.628 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:52:58.628 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:52:58.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28970 150\n [Camera]
17-03-17 19:52:58.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:52:59.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:52:59.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:52:59.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:59.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:59.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:52:59.238 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:52:59.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:52:59.238 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:59.238 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:59.238 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:52:59.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28970 791
17-03-17 19:52:59.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:52:59.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:52:59.638 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:52:59.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:59.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:52:59.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:52:59.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:52:59.648 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:59.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:52:59.648 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:52:59.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:52:59.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:52:59.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:52:59.778 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:52:59.778 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:52:59.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:52:59.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:52:59.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:52:59.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:52:59.778 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:52:59.778 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:52:59.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 19:52:59.968 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:52:59.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28970 150' command took 2 ms to send, 1328 ms to get response, and 1339 ms overall
17-03-17 19:53:00.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:00.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131816267532746. ------
17-03-17 19:53:00.088 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:00.088 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13839 mm
17-03-17 19:53:00.088 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:00.088 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:53:00.088 -07 000000478 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:53:00.088 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:00.088 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30232, sync = True, waitForSettling = False)
17-03-17 19:53:00.088 -07 000000502 INF: Z Motor: Moving to -0.138393 mm, started at -0.131816 mm, distance = -6.58 um
17-03-17 19:53:00.098 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:53:00.098 -07 000000502 INF: FPGA: Xmit ZDACW 30232\n [Z Motor]
17-03-17 19:53:00.098 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:53:00.108 -07 000000502 INF: FPGA: 'ZDACW 30232' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:00.108 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:00.108 -07 000000438 INF: FPGA: Recv ZDACR 30232
17-03-17 19:53:00.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:00.118 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:00.118 -07 000000502 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:53:00.118 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:53:00.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:53:00.128 -07 000000478 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:00.128 -07 000000478 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:00.128 -07 000000478 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:53:00.128 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:00.138 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:00.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:53:00.168 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:53:00.168 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:00.168 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:53:00.168 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:53:00.168 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:00.178 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:53:00.178 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:53:00.178 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:53:00.178 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:53:00.328 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:00.328 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 233 ms overall
17-03-17 19:53:00.508 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:53:00.508 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:53:00.548 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:00.548 -07 000000482 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:53:00.558 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:00.558 -07 000000478 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:00.558 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:53:00.558 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 19:53:01.508 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:01.508 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:53:01.518 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:01.518 -07 000000478 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:01.538 -07 000000478 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:01.538 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:01.538 -07 000000478 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 19:53:01.538 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138393 mm (DAC = 30232)
17-03-17 19:53:01.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.548 -07 000000438 INF: FPGA: Recv ZSGSRD 30833
17-03-17 19:53:01.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 19:53:01.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.548 -07 000000541 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:53:01.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:01.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:53:01.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.568 -07 000000438 INF: FPGA: Recv ZSGSRD 30834
17-03-17 19:53:01.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.578 -07 000000502 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:53:01.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.588 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.588 -07 000000541 INF: FPGA: Recv ZSGSRD 30832
17-03-17 19:53:01.598 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.598 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.598 -07 000000478 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:53:01.608 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.608 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.608 -07 000000541 INF: FPGA: Recv ZSGSRD 30825
17-03-17 19:53:01.618 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.618 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.618 -07 000000478 INF: FPGA: Recv ZSGSRD 30825
17-03-17 19:53:01.628 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.628 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:01.628 -07 000000502 INF: FPGA: Recv ZSGSRD 30842
17-03-17 19:53:01.638 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.638 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:01.638 -07 000000547 INF: FPGA: Recv ZPIEZORD 26829
17-03-17 19:53:01.648 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -8.8 V.
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30833 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30834 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30825 (-137.6 uncal um), Max = 30842 (-137.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30833, posNoise = 9, negNoise = 8
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: After move to -0.138393, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:53:01.648 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:01.698 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:53:01.698 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:01.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:01.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:01.698 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:01.708 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:01.708 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:01.708 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:01.708 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:01.708 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:01.708 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:01.708 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:01.718 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:01.718 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:53:01.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:01.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:01.758 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:01.958 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:01.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:01.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:01.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:01.998 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:01.998 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:01.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:53:02.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:53:02.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:02.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:02.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:53:02.098 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:02.748 -07 000000561 INF: Autofocus start
17-03-17 19:53:02.748 -07 000000561 INF: MeasureProfile start
17-03-17 19:53:02.758 -07 000000561 INF: MeasureProfile done
17-03-17 19:53:02.758 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:53:02.758 -07 000000561 INF: Autofocus finished
17-03-17 19:53:02.758 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:02.758 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 655 ms to get response, and 660 ms overall
17-03-17 19:53:02.758 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:02.958 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:02.958 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 19:53:02.968 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138401084978051. ----------
17-03-17 19:53:02.968 -07 000000610 INF: Cycle	31	Tile	8	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:02.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28739, sync = True, waitForSettling = True)
17-03-17 19:53:02.978 -07 000000610 INF: Z Motor: Moving to -0.131559 mm, started at -0.138401 mm, distance = 6.84 um
17-03-17 19:53:02.978 -07 000000610 INF: FPGA: Xmit ZDACW 28739\n [Z Motor]
17-03-17 19:53:02.978 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:53:02.988 -07 000000610 INF: FPGA: 'ZDACW 28739' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:02.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:02.988 -07 000000561 INF: FPGA: Recv ZDACR 28739
17-03-17 19:53:02.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:02.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29767
17-03-17 19:53:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.158 -07 000000501 INF: FPGA: Recv ZSGSRD 29764
17-03-17 19:53:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29768
17-03-17 19:53:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29770
17-03-17 19:53:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29767
17-03-17 19:53:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29771
17-03-17 19:53:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.208 -07 000000593 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:53:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29770
17-03-17 19:53:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.228 -07 000000593 INF: FPGA: Recv ZSGSRD 29768
17-03-17 19:53:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:03.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29764
17-03-17 19:53:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:03.248 -07 000000593 INF: FPGA: Recv ZPIEZORD 25445
17-03-17 19:53:03.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:03.258 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.385 V. Piezo Error = -9.5 V.
17-03-17 19:53:03.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29768 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29768 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29764 (-130.8 uncal um), Max = 29773 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:53:03.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29768, posNoise = 5, negNoise = 4
17-03-17 19:53:03.258 -07 000000610 INF: Z Motor: After move to -0.131559, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:03.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:53:03.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:03.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:03.258 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:03.258 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:03.258 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:03.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:03.258 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:03.258 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:03.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:03.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:03.258 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:03.258 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:03.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:03.268 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:03.268 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:03.268 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:03.268 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:03.268 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:53:03.278 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:53:03.278 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:03.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28916 150\n [Camera]
17-03-17 19:53:03.378 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.007176,
17-03-17 19:53:03.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:03.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:03.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:03.888 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:03.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:03.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:03.888 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:03.888 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:03.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:53:03.888 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:03.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:53:04.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28916 791
17-03-17 19:53:04.228 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:04.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:53:04.288 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:53:04.288 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:04.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:53:04.288 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:53:04.288 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:04.298 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:04.298 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:53:04.298 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:04.298 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:53:04.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:04.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:04.418 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:04.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:04.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:04.428 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:04.428 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:04.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:53:04.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:04.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:53:04.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:53:04.618 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:04.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28916 150' command took 2 ms to send, 1330 ms to get response, and 1336 ms overall
17-03-17 19:53:04.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:04.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131559299047075. ------
17-03-17 19:53:04.738 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13786 mm
17-03-17 19:53:04.738 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:04.738 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:04.738 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:53:04.738 -07 000000429 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:53:04.738 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30116, sync = True, waitForSettling = False)
17-03-17 19:53:04.738 -07 000000569 INF: Z Motor: Moving to -0.137862 mm, started at -0.131559 mm, distance = -6.30 um
17-03-17 19:53:04.738 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:04.748 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:04.748 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:04.748 -07 000000618 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:53:04.758 -07 000000569 INF: FPGA: Xmit ZDACW 30116\n [Z Motor]
17-03-17 19:53:04.758 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:53:04.758 -07 000000429 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:04.758 -07 000000429 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:04.758 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:53:04.758 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:53:04.768 -07 000000569 INF: FPGA: 'ZDACW 30116' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:53:04.768 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:04.778 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:04.788 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:04.788 -07 000000482 INF: FPGA: Recv ZDACR 30116
17-03-17 19:53:04.798 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:04.798 -07 000000569 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:53:04.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:53:04.828 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:53:04.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:04.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:53:04.828 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:53:04.828 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:04.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:53:04.828 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:53:04.828 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:04.838 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:53:04.968 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:04.968 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:53:05.148 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:53:05.148 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:53:05.188 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:05.748 -07 000000382 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:53:05.748 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 550 ms to get response, and 557 ms overall
17-03-17 19:53:05.748 -07 000000429 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:05.748 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:53:05.748 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:53:06.698 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:06.698 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:53:06.708 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:06.708 -07 000000429 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:06.728 -07 000000429 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:06.728 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:53:06.728 -07 000000429 INF: Y Motor: Moved to 66.5396 after 1989 ms (table move)
17-03-17 19:53:06.728 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:06.728 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137862 mm (DAC = 30116)
17-03-17 19:53:06.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30749
17-03-17 19:53:06.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:06.738 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30749
17-03-17 19:53:06.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30745
17-03-17 19:53:06.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.758 -07 000000482 INF: FPGA: Recv ZSGSRD 30747
17-03-17 19:53:06.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.768 -07 000000431 INF: FPGA: Recv ZSGSRD 30750
17-03-17 19:53:06.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:53:06.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.788 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30747
17-03-17 19:53:06.798 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.798 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.798 -07 000000429 INF: FPGA: Recv ZSGSRD 30748
17-03-17 19:53:06.808 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.808 -07 000000382 INF: FPGA: Recv ZSGSRD 30750
17-03-17 19:53:06.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:06.818 -07 000000482 INF: FPGA: Recv ZSGSRD 30747
17-03-17 19:53:06.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.828 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:06.828 -07 000000424 INF: FPGA: Recv ZPIEZORD 26741
17-03-17 19:53:06.838 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.595 V. Piezo Error = -8.8 V.
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30749 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30748 (-137.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30745 (-137.0 uncal um), Max = 30757 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30749, posNoise = 8, negNoise = 4
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: After move to -0.137862, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: Settle wait time = 1992 ms, measure time = 104 ms (allowed 150 ms), total time = 2096 ms
17-03-17 19:53:06.838 -07 000000593 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:06.888 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2149 ms
17-03-17 19:53:06.888 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:06.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:06.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:06.888 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:06.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:06.888 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:06.888 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:06.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:06.888 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:06.888 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:06.888 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:06.898 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:06.898 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:53:06.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:06.948 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 19:53:07.148 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 19:53:07.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 19:53:07.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:07.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:07.188 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:07.188 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:07.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 19:53:07.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:53:07.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:07.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:07.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:53:07.388 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:07.388 -07 000000431 INF: Autofocus start
17-03-17 19:53:07.388 -07 000000431 INF: MeasureProfile start
17-03-17 19:53:07.388 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:07.398 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:07.398 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:07.398 -07 000000431 INF: MeasureProfile done
17-03-17 19:53:07.398 -07 000000431 INF: X=30  Z correction [um]=0.1203633
17-03-17 19:53:07.398 -07 000000431 INF: Autofocus finished
17-03-17 19:53:07.598 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:07.598 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:07.598 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137861451158143. ----------
17-03-17 19:53:07.598 -07 000000610 INF: Cycle	31	Tile	9	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:07.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28655, sync = True, waitForSettling = True)
17-03-17 19:53:07.608 -07 000000610 INF: Z Motor: Moving to -0.131174 mm, started at -0.137861 mm, distance = 6.69 um
17-03-17 19:53:07.608 -07 000000610 INF: FPGA: Xmit ZDACW 28655\n [Z Motor]
17-03-17 19:53:07.608 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:53:07.618 -07 000000610 INF: FPGA: 'ZDACW 28655' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:07.618 -07 000000429 INF: FPGA: Recv ZDACR 28655
17-03-17 19:53:07.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:07.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29715
17-03-17 19:53:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:53:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29707
17-03-17 19:53:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29707
17-03-17 19:53:07.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.818 -07 000000424 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:53:07.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29714
17-03-17 19:53:07.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.838 -07 000000424 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:53:07.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.848 -07 000000429 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:53:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.858 -07 000000382 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:53:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:07.868 -07 000000541 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:53:07.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:07.878 -07 000000618 INF: FPGA: Recv ZPIEZORD 25346
17-03-17 19:53:07.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:07.888 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.6 V.
17-03-17 19:53:07.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29710 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29707 (-130.4 uncal um), Max = 29715 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:53:07.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29710, posNoise = 5, negNoise = 3
17-03-17 19:53:07.888 -07 000000610 INF: Z Motor: After move to -0.131174, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:07.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:53:07.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:07.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:07.888 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:07.888 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:07.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:07.888 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:07.888 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:07.888 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:07.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:07.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:07.888 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:07.888 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:07.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:07.888 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:07.898 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:07.898 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:07.908 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:53:07.908 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:53:07.908 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:53:07.908 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:53:07.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28832 150\n [Camera]
17-03-17 19:53:08.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:08.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:08.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:08.518 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:08.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:08.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:08.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:08.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:08.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:53:08.518 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:08.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:53:08.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28832 791
17-03-17 19:53:08.748 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.02213,
17-03-17 19:53:08.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:08.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:53:08.918 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:53:08.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:08.918 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:08.918 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:53:08.918 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:53:08.918 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:53:08.918 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:08.918 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:08.928 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:53:09.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:09.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:09.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:09.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:09.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:09.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:53:09.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:09.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:09.058 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:09.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:53:09.248 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 19:53:09.248 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:09.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28832 150' command took 2 ms to send, 1326 ms to get response, and 1339 ms overall
17-03-17 19:53:09.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:09.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131186694742853. ------
17-03-17 19:53:09.258 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13799 mm
17-03-17 19:53:09.258 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:09.258 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:09.258 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:53:09.258 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:53:09.258 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30143, sync = True, waitForSettling = False)
17-03-17 19:53:09.258 -07 000000429 INF: Z Motor: Moving to -0.137986 mm, started at -0.131187 mm, distance = -6.80 um
17-03-17 19:53:09.258 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:09.268 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:09.268 -07 000000429 INF: FPGA: Xmit ZDACW 30143\n [Z Motor]
17-03-17 19:53:09.268 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:53:09.278 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:09.278 -07 000000429 INF: FPGA: 'ZDACW 30143' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:53:09.278 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:53:09.288 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:09.288 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:53:09.288 -07 000000431 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:09.288 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:09.288 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:53:09.298 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:09.298 -07 000000462 INF: FPGA: Recv ZDACR 30143
17-03-17 19:53:09.308 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:09.308 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:09.308 -07 000000429 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:53:09.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:53:09.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:53:09.468 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:09.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:53:09.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:53:09.468 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:09.468 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:09.468 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:09.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:53:09.478 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:53:09.488 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:09.488 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:53:09.678 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:53:09.678 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:53:09.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:09.718 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:53:09.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:09.728 -07 000000431 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:09.728 -07 000000431 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:53:09.728 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:53:10.678 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:10.678 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:53:10.688 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.688 -07 000000431 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:10.708 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:10.708 -07 000000431 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:10.708 -07 000000431 INF: Y Motor: Moved to 67.3721 after 1446 ms (table move)
17-03-17 19:53:10.708 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137986 mm (DAC = 30143)
17-03-17 19:53:10.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.708 -07 000000482 INF: FPGA: Recv ZSGSRD 30766
17-03-17 19:53:10.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:10.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30769
17-03-17 19:53:10.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.728 -07 000000431 INF: FPGA: Recv ZSGSRD 30771
17-03-17 19:53:10.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30772
17-03-17 19:53:10.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30758
17-03-17 19:53:10.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.758 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.758 -07 000000569 INF: FPGA: Recv ZSGSRD 30774
17-03-17 19:53:10.768 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.768 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.768 -07 000000431 INF: FPGA: Recv ZSGSRD 30769
17-03-17 19:53:10.778 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.778 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.778 -07 000000502 INF: FPGA: Recv ZSGSRD 30767
17-03-17 19:53:10.788 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.788 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.788 -07 000000547 INF: FPGA: Recv ZSGSRD 30766
17-03-17 19:53:10.798 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.798 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:10.798 -07 000000431 INF: FPGA: Recv ZSGSRD 30765
17-03-17 19:53:10.808 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.808 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:10.808 -07 000000569 INF: FPGA: Recv ZPIEZORD 26752
17-03-17 19:53:10.818 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.8 V.
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30768 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30768 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30758 (-137.1 uncal um), Max = 30774 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30768, posNoise = 6, negNoise = 10
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: After move to -0.137986, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:53:10.818 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:10.868 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:53:10.868 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:10.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:10.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:10.868 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:10.868 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:10.868 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:10.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:10.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:10.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:10.878 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:10.878 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:10.878 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:10.878 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:53:10.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:10.928 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:11.128 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:11.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:11.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:11.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:53:11.168 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:11.168 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:11.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:53:11.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:53:11.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:11.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:11.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:53:11.268 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:11.268 -07 000000431 INF: Autofocus start
17-03-17 19:53:11.268 -07 000000431 INF: MeasureProfile start
17-03-17 19:53:11.268 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:11.278 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:11.278 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:11.278 -07 000000431 INF: MeasureProfile done
17-03-17 19:53:11.278 -07 000000431 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:53:11.278 -07 000000431 INF: Autofocus finished
17-03-17 19:53:11.478 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:11.478 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:11.478 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137983511188836. ----------
17-03-17 19:53:11.478 -07 000000610 INF: Cycle	31	Tile	10	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:11.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28638, sync = True, waitForSettling = True)
17-03-17 19:53:11.488 -07 000000610 INF: Z Motor: Moving to -0.131096 mm, started at -0.137984 mm, distance = 6.89 um
17-03-17 19:53:11.488 -07 000000610 INF: FPGA: Xmit ZDACW 28638\n [Z Motor]
17-03-17 19:53:11.488 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:53:11.498 -07 000000610 INF: FPGA: 'ZDACW 28638' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:11.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:11.498 -07 000000382 INF: FPGA: Recv ZDACR 28638
17-03-17 19:53:11.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:53:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:11.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.668 -07 000000618 INF: FPGA: Recv ZSGSRD 29698
17-03-17 19:53:11.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:53:11.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29691
17-03-17 19:53:11.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.698 -07 000000478 INF: FPGA: Recv ZSGSRD 29699
17-03-17 19:53:11.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29698
17-03-17 19:53:11.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29694
17-03-17 19:53:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:53:11.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.738 -07 000000462 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:53:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:11.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29692
17-03-17 19:53:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:11.758 -07 000000462 INF: FPGA: Recv ZPIEZORD 25375
17-03-17 19:53:11.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:11.768 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 19:53:11.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29695 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29700 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:53:11.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29695, posNoise = 5, negNoise = 6
17-03-17 19:53:11.768 -07 000000610 INF: Z Motor: After move to -0.131096, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:11.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:53:11.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:11.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:11.768 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:11.768 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:11.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:11.768 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:11.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:11.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:11.768 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:11.768 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:11.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:11.768 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:11.778 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:53:11.778 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:11.778 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:11.778 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:11.778 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:11.788 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:53:11.788 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:53:11.788 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:53:11.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28815 150\n [Camera]
17-03-17 19:53:11.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:12.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:12.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:12.398 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:12.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:12.398 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:12.398 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:12.398 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:12.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:53:12.398 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:12.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:53:12.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 791
17-03-17 19:53:12.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:12.778 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:53:12.778 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:53:12.778 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:12.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:53:12.778 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:53:12.778 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:12.778 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:12.778 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:12.778 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:53:12.788 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:53:12.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:12.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:12.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:12.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:12.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:53:12.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:12.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:12.928 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:12.928 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:12.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:53:13.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:13.118 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:13.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28815 150' command took 2 ms to send, 1327 ms to get response, and 1336 ms overall
17-03-17 19:53:13.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:13.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131090331560727. ------
17-03-17 19:53:13.238 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:13.238 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13757 mm
17-03-17 19:53:13.238 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:13.238 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:13.238 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:53:13.238 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:53:13.238 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 19:53:13.238 -07 000000429 INF: Z Motor: Moving to -0.137569 mm, started at -0.131090 mm, distance = -6.48 um
17-03-17 19:53:13.248 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:13.248 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:13.248 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:53:13.258 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:53:13.258 -07 000000541 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:13.258 -07 000000429 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 19:53:13.258 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:13.258 -07 000000541 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:53:13.258 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:53:13.268 -07 000000429 INF: FPGA: 'ZDACW 30052' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:53:13.268 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:13.278 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:13.288 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:13.288 -07 000000478 INF: FPGA: Recv ZDACR 30052
17-03-17 19:53:13.298 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:53:13.298 -07 000000429 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:53:13.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:53:13.328 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:53:13.328 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:13.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:53:13.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:53:13.328 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:13.338 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:13.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:53:13.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:53:13.338 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:53:13.468 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:13.468 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:53:13.648 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:53:13.648 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:53:13.688 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:13.688 -07 000000478 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:53:13.698 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:13.698 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:13.698 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:53:13.698 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-17 19:53:14.118 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.011254,
17-03-17 19:53:14.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:14.648 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:53:14.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:14.658 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:14.668 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:14.678 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:14.678 -07 000000541 INF: Y Motor: Moved to 68.2051 after 1432 ms (table move)
17-03-17 19:53:14.678 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 19:53:14.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.678 -07 000000593 INF: FPGA: Recv ZSGSRD 30715
17-03-17 19:53:14.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:14.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30704
17-03-17 19:53:14.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.698 -07 000000478 INF: FPGA: Recv ZSGSRD 30707
17-03-17 19:53:14.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.708 -07 000000502 INF: FPGA: Recv ZSGSRD 30710
17-03-17 19:53:14.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30707
17-03-17 19:53:14.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.728 -07 000000541 INF: FPGA: Recv ZSGSRD 30708
17-03-17 19:53:14.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.738 -07 000000501 INF: FPGA: Recv ZSGSRD 30709
17-03-17 19:53:14.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:14.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.748 -07 000000462 INF: FPGA: Recv ZSGSRD 30697
17-03-17 19:53:14.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.758 -07 000000561 INF: FPGA: Recv ZSGSRD 30702
17-03-17 19:53:14.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:14.768 -07 000000462 INF: FPGA: Recv ZSGSRD 30707
17-03-17 19:53:14.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.778 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:14.778 -07 000000561 INF: FPGA: Recv ZPIEZORD 26715
17-03-17 19:53:14.788 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -8.8 V.
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30707 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30707 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30697 (-136.7 uncal um), Max = 30715 (-136.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30707, posNoise = 8, negNoise = 10
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: After move to -0.137569, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:53:14.788 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:14.838 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:53:14.838 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:14.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:14.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:14.838 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:14.838 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:14.838 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:14.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:14.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:14.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:14.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:14.838 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:14.858 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:53:14.858 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:53:14.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:14.898 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:15.098 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:15.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:15.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:15.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:15.138 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:15.138 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:15.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:53:15.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:53:15.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:15.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:15.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:53:15.338 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:15.338 -07 000000569 INF: Autofocus start
17-03-17 19:53:15.338 -07 000000569 INF: MeasureProfile start
17-03-17 19:53:15.338 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:15.348 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:15.348 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:15.348 -07 000000569 INF: MeasureProfile done
17-03-17 19:53:15.348 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:53:15.348 -07 000000569 INF: Autofocus finished
17-03-17 19:53:15.548 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:15.548 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:53:15.558 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137591634248189. ----------
17-03-17 19:53:15.558 -07 000000610 INF: Cycle	31	Tile	11	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:15.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = True)
17-03-17 19:53:15.558 -07 000000610 INF: Z Motor: Moving to -0.130735 mm, started at -0.137592 mm, distance = 6.86 um
17-03-17 19:53:15.558 -07 000000610 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-17 19:53:15.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:53:15.568 -07 000000610 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:15.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:15.568 -07 000000482 INF: FPGA: Recv ZDACR 28559
17-03-17 19:53:15.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:53:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:53:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.748 -07 000000561 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:53:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.758 -07 000000482 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:53:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29645
17-03-17 19:53:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:53:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:53:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.798 -07 000000541 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:53:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.808 -07 000000561 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:53:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:15.818 -07 000000541 INF: FPGA: Recv ZSGSRD 29635
17-03-17 19:53:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:15.828 -07 000000593 INF: FPGA: Recv ZPIEZORD 25327
17-03-17 19:53:15.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:15.838 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V.
17-03-17 19:53:15.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:53:15.838 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 5, negNoise = 5
17-03-17 19:53:15.838 -07 000000610 INF: Z Motor: After move to -0.130735, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:15.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:53:15.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:15.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:15.838 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:15.838 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:15.838 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:15.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:15.838 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:15.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:15.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:53:15.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:53:15.838 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:15.838 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:15.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:15.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:15.848 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:15.848 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:15.858 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:15.858 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:15.858 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:53:15.858 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:53:15.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28736 150\n [Camera]
17-03-17 19:53:16.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:16.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:16.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:16.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:16.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:16.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:16.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:16.468 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:16.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:53:16.468 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:16.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:53:16.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28736 791
17-03-17 19:53:16.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:16.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:16.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:53:16.858 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:53:16.858 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:16.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:53:16.858 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:53:16.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:16.858 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:16.858 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:16.858 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:53:16.868 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:53:16.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:16.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:16.998 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:16.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:17.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:17.008 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:17.008 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:17.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:53:17.008 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:17.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:53:17.188 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:53:17.188 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:17.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28736 150' command took 2 ms to send, 1329 ms to get response, and 1336 ms overall
17-03-17 19:53:17.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:17.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.13073699989293. ------
17-03-17 19:53:17.198 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:17.198 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13744 mm
17-03-17 19:53:17.198 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:17.198 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:53:17.198 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:53:17.198 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30023, sync = True, waitForSettling = False)
17-03-17 19:53:17.198 -07 000000569 INF: Z Motor: Moving to -0.137436 mm, started at -0.130737 mm, distance = -6.70 um
17-03-17 19:53:17.198 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:17.208 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:17.208 -07 000000569 INF: FPGA: Xmit ZDACW 30023\n [Z Motor]
17-03-17 19:53:17.208 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:53:17.218 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:17.218 -07 000000569 INF: FPGA: 'ZDACW 30023' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:53:17.218 -07 000000593 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:53:17.228 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:17.228 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:53:17.228 -07 000000382 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:17.348 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:17.348 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:17.348 -07 000000382 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:53:17.348 -07 000000593 INF: FPGA: Recv ZDACR 30023
17-03-17 19:53:17.358 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 19:53:17.358 -07 000000569 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-17 19:53:17.358 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:17.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:53:17.398 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:53:17.398 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:17.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:53:17.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:53:17.398 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:17.398 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:17.398 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:17.398 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:53:17.408 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:53:17.428 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:17.428 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 80 ms to get response, and 222 ms overall
17-03-17 19:53:17.728 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:53:17.728 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:53:17.768 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:17.768 -07 000000593 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:53:17.778 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:17.778 -07 000000382 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:17.778 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:53:17.778 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.175 mm/sec
17-03-17 19:53:18.728 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:18.728 -07 000000569 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:53:18.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:18.738 -07 000000382 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:18.758 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:18.758 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:18.758 -07 000000382 INF: Y Motor: Moved to 69.0273 after 1558 ms (table move)
17-03-17 19:53:18.758 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137436 mm (DAC = 30023)
17-03-17 19:53:18.758 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.768 -07 000000569 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:53:18.768 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:53:18.768 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30687
17-03-17 19:53:18.778 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.778 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30683
17-03-17 19:53:18.788 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.788 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.788 -07 000000382 INF: FPGA: Recv ZSGSRD 30683
17-03-17 19:53:18.798 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.798 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.798 -07 000000502 INF: FPGA: Recv ZSGSRD 30686
17-03-17 19:53:18.808 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.808 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.808 -07 000000382 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:53:18.818 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.818 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.818 -07 000000561 INF: FPGA: Recv ZSGSRD 30686
17-03-17 19:53:18.828 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.828 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30680
17-03-17 19:53:18.838 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.838 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.838 -07 000000561 INF: FPGA: Recv ZSGSRD 30686
17-03-17 19:53:18.848 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.858 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:18.858 -07 000000382 INF: FPGA: Recv ZSGSRD 30687
17-03-17 19:53:18.868 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:53:18.868 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:18.868 -07 000000502 INF: FPGA: Recv ZPIEZORD 26714
17-03-17 19:53:18.878 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.7 V.
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30685 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30686 (-136.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30680 (-136.6 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30685, posNoise = 2, negNoise = 5
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: After move to -0.137436, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: Settle wait time = 1560 ms, measure time = 113 ms (allowed 150 ms), total time = 1673 ms
17-03-17 19:53:18.878 -07 000000618 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:18.918 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 19:53:18.918 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:18.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:18.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:18.918 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:18.918 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:18.918 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:18.918 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:18.918 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:18.918 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:18.928 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:18.928 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:18.928 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:53:18.938 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:53:18.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:18.978 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:19.178 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:19.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:19.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:19.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:19.218 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:19.218 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:19.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:53:19.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:53:19.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:19.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:53:19.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:53:19.318 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:19.318 -07 000000382 INF: Autofocus start
17-03-17 19:53:19.318 -07 000000382 INF: MeasureProfile start
17-03-17 19:53:19.318 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:19.328 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:19.328 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:19.338 -07 000000382 INF: MeasureProfile done
17-03-17 19:53:19.338 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:53:19.338 -07 000000382 INF: Autofocus finished
17-03-17 19:53:19.488 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.015368,
17-03-17 19:53:19.528 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:19.528 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:53:19.528 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13745030158107. ----------
17-03-17 19:53:19.528 -07 000000610 INF: Cycle	31	Tile	12	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:19.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28530, sync = True, waitForSettling = True)
17-03-17 19:53:19.538 -07 000000610 INF: Z Motor: Moving to -0.130602 mm, started at -0.137450 mm, distance = 6.85 um
17-03-17 19:53:19.538 -07 000000610 INF: FPGA: Xmit ZDACW 28530\n [Z Motor]
17-03-17 19:53:19.538 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:53:19.548 -07 000000610 INF: FPGA: 'ZDACW 28530' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:19.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:19.548 -07 000000502 INF: FPGA: Recv ZDACR 28530
17-03-17 19:53:19.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.708 -07 000000593 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:53:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.718 -07 000000541 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:53:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.728 -07 000000561 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:53:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.738 -07 000000541 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:53:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.748 -07 000000569 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:53:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.758 -07 000000382 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:53:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.768 -07 000000569 INF: FPGA: Recv ZSGSRD 29624
17-03-17 19:53:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:53:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29613
17-03-17 19:53:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:19.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:53:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:19.808 -07 000000593 INF: FPGA: Recv ZPIEZORD 25305
17-03-17 19:53:19.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:19.818 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.5 V.
17-03-17 19:53:19.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29620 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29613 (-129.8 uncal um), Max = 29624 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:53:19.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29620, posNoise = 4, negNoise = 7
17-03-17 19:53:19.818 -07 000000610 INF: Z Motor: After move to -0.130602, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:19.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:53:19.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:19.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:19.818 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:19.818 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:19.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:19.818 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:19.818 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:19.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:19.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:19.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:19.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:19.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:19.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:19.828 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:19.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:19.828 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:19.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:19.838 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:53:19.838 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:53:19.838 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:19.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28707 150\n [Camera]
17-03-17 19:53:20.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:20.438 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:20.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:20.448 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:20.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:20.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:20.448 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:20.448 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:20.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:53:20.448 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:20.448 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:53:20.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28707 791
17-03-17 19:53:20.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:20.828 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:53:20.828 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:53:20.828 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:20.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:53:20.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:53:20.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:20.828 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:20.828 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:53:20.828 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:20.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:53:20.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:20.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:20.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:20.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:20.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:53:20.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:20.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:20.988 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:20.988 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:20.988 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:53:21.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:21.168 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:21.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28707 150' command took 2 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-17 19:53:21.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:21.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130608515650095. ------
17-03-17 19:53:21.178 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:21.178 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13704 mm
17-03-17 19:53:21.178 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:21.178 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:21.178 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29936, sync = True, waitForSettling = False)
17-03-17 19:53:21.178 -07 000000561 INF: Z Motor: Moving to -0.137038 mm, started at -0.130609 mm, distance = -6.43 um
17-03-17 19:53:21.188 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:21.188 -07 000000561 INF: FPGA: Xmit ZDACW 29936\n [Z Motor]
17-03-17 19:53:21.188 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:53:21.188 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:53:21.188 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:53:21.198 -07 000000561 INF: FPGA: 'ZDACW 29936' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:21.198 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:21.198 -07 000000593 INF: FPGA: Recv ZDACR 29936
17-03-17 19:53:21.208 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:21.208 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:21.208 -07 000000561 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 19:53:21.208 -07 000000438 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:53:21.218 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:21.218 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:21.218 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:21.218 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:21.218 -07 000000541 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:53:21.228 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:21.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:53:21.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:53:21.378 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:21.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:53:21.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:53:21.388 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:21.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:21.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:53:21.388 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:21.398 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:53:21.418 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:21.418 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:53:21.598 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:53:21.598 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:53:21.638 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:21.638 -07 000000382 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:53:21.648 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:21.648 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:21.648 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:53:21.648 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.196 mm/sec
17-03-17 19:53:21.728 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:22.598 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:22.598 -07 000000569 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:53:22.608 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:22.608 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:22.628 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:22.628 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:22.628 -07 000000541 INF: Y Motor: Moved to 69.8638 after 1442 ms (table move)
17-03-17 19:53:22.628 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137038 mm (DAC = 29936)
17-03-17 19:53:22.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.628 -07 000000541 INF: FPGA: Recv ZSGSRD 30623
17-03-17 19:53:22.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:22.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30631
17-03-17 19:53:22.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.648 -07 000000618 INF: FPGA: Recv ZSGSRD 30628
17-03-17 19:53:22.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.658 -07 000000569 INF: FPGA: Recv ZSGSRD 30620
17-03-17 19:53:22.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30622
17-03-17 19:53:22.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30625
17-03-17 19:53:22.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.688 -07 000000569 INF: FPGA: Recv ZSGSRD 30622
17-03-17 19:53:22.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.698 -07 000000593 INF: FPGA: Recv ZSGSRD 30620
17-03-17 19:53:22.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30614
17-03-17 19:53:22.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:22.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30626
17-03-17 19:53:22.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.728 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:22.728 -07 000000382 INF: FPGA: Recv ZPIEZORD 26615
17-03-17 19:53:22.738 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -8.8 V.
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30623 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30622 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30614 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30623, posNoise = 8, negNoise = 9
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: After move to -0.137038, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:53:22.738 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:22.788 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:53:22.788 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:22.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:22.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:22.788 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:22.788 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:22.788 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:22.788 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:22.788 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:53:22.788 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:22.798 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:22.798 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:22.798 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:22.798 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:53:22.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:22.858 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:23.048 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:23.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:23.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:23.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:53:23.088 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:23.088 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:23.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:53:23.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:53:23.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:23.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:23.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:53:23.188 -07 000000502 INF: Autofocus start
17-03-17 19:53:23.188 -07 000000502 INF: MeasureProfile start
17-03-17 19:53:23.188 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:23.188 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:23.198 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:23.198 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:23.198 -07 000000502 INF: MeasureProfile done
17-03-17 19:53:23.198 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:53:23.198 -07 000000502 INF: Autofocus finished
17-03-17 19:53:23.398 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:23.398 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:23.398 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.137052000428281. ----------
17-03-17 19:53:23.408 -07 000000610 INF: Cycle	31	Tile	13	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:23.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28431, sync = True, waitForSettling = True)
17-03-17 19:53:23.408 -07 000000610 INF: Z Motor: Moving to -0.130149 mm, started at -0.137052 mm, distance = 6.90 um
17-03-17 19:53:23.408 -07 000000610 INF: FPGA: Xmit ZDACW 28431\n [Z Motor]
17-03-17 19:53:23.408 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:53:23.418 -07 000000610 INF: FPGA: 'ZDACW 28431' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:23.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:23.418 -07 000000382 INF: FPGA: Recv ZDACR 28431
17-03-17 19:53:23.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29548
17-03-17 19:53:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.588 -07 000000593 INF: FPGA: Recv ZSGSRD 29550
17-03-17 19:53:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29551
17-03-17 19:53:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.608 -07 000000593 INF: FPGA: Recv ZSGSRD 29543
17-03-17 19:53:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.618 -07 000000569 INF: FPGA: Recv ZSGSRD 29542
17-03-17 19:53:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.628 -07 000000482 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:53:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29546
17-03-17 19:53:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29550
17-03-17 19:53:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.658 -07 000000482 INF: FPGA: Recv ZSGSRD 29550
17-03-17 19:53:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:23.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29550
17-03-17 19:53:23.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:23.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 25212
17-03-17 19:53:23.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:23.688 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.5 V.
17-03-17 19:53:23.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29548 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29542 (-129.3 uncal um), Max = 29552 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:53:23.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29548, posNoise = 4, negNoise = 6
17-03-17 19:53:23.688 -07 000000610 INF: Z Motor: After move to -0.130149, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:23.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:53:23.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:23.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:23.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:23.688 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:23.688 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:23.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:23.688 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:23.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:23.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:53:23.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:23.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:23.688 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:23.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:23.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:23.698 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:23.698 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:23.708 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:53:23.708 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:53:23.708 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:53:23.708 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:53:23.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28608 150\n [Camera]
17-03-17 19:53:23.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:24.318 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:24.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:24.318 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:24.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:24.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:53:24.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:24.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:24.318 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:24.318 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:24.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:53:24.508 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28608 791
17-03-17 19:53:24.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:24.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:53:24.708 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:53:24.708 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:24.708 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:24.708 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:53:24.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:53:24.708 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:53:24.708 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:24.708 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:24.718 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:53:24.858 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.007176,
17-03-17 19:53:24.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:53:24.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:53:24.858 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:24.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:24.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:53:24.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:53:24.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:53:24.858 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:24.868 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:24.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:53:25.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:53:25.048 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:25.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28608 150' command took 2 ms to send, 1323 ms to get response, and 1336 ms overall
17-03-17 19:53:25.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:25.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130145972375888. ------
17-03-17 19:53:25.048 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:25.048 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13658 mm
17-03-17 19:53:25.058 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:25.058 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:25.058 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:53:25.058 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29835, sync = True, waitForSettling = False)
17-03-17 19:53:25.058 -07 000000429 INF: Z Motor: Moving to -0.136576 mm, started at -0.130146 mm, distance = -6.43 um
17-03-17 19:53:25.058 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:25.058 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:53:25.058 -07 000000478 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:53:25.068 -07 000000429 INF: FPGA: Xmit ZDACW 29835\n [Z Motor]
17-03-17 19:53:25.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:53:25.078 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:25.078 -07 000000429 INF: FPGA: 'ZDACW 29835' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:53:25.078 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:53:25.088 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:53:25.088 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:25.088 -07 000000478 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:25.088 -07 000000478 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:53:25.198 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:25.198 -07 000000382 INF: FPGA: Recv ZDACR 29835
17-03-17 19:53:25.208 -07 000000429 INF: FPGA: 'ZDACR' command took 115 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 19:53:25.208 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:25.208 -07 000000429 INF: Z Motor: MoveAbsStepped took 146 ms (did NOT wait for settling yet))
17-03-17 19:53:25.258 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:53:25.258 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:53:25.258 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:25.258 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:25.258 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:53:25.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:53:25.258 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:53:25.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:25.268 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:53:25.268 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:53:25.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:25.268 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:53:25.578 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:53:25.578 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:53:25.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:25.618 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:53:25.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:25.628 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:25.628 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:53:25.628 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 498 ms, distance = 0.839 mm, average velocity = 1.684 mm/sec
17-03-17 19:53:26.578 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:26.578 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:53:26.588 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:26.588 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:26.608 -07 000000478 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:26.608 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:53:26.608 -07 000000478 INF: Y Motor: Moved to 70.6890 after 1547 ms (table move)
17-03-17 19:53:26.608 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136576 mm (DAC = 29835)
17-03-17 19:53:26.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.608 -07 000000438 INF: FPGA: Recv ZSGSRD 30550
17-03-17 19:53:26.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:26.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.618 -07 000000569 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:53:26.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.628 -07 000000478 INF: FPGA: Recv ZSGSRD 30549
17-03-17 19:53:26.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.638 -07 000000569 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:53:26.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30552
17-03-17 19:53:26.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30560
17-03-17 19:53:26.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:53:26.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30551
17-03-17 19:53:26.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30548
17-03-17 19:53:26.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:26.698 -07 000000429 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:53:26.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.708 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:26.708 -07 000000569 INF: FPGA: Recv ZPIEZORD 26536
17-03-17 19:53:26.718 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -8.8 V.
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30550 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30550 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30544 (-135.8 uncal um), Max = 30560 (-135.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30550, posNoise = 10, negNoise = 6
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: After move to -0.136576, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: Settle wait time = 1553 ms, measure time = 104 ms (allowed 150 ms), total time = 1657 ms
17-03-17 19:53:26.718 -07 000000593 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:26.728 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:26.768 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms
17-03-17 19:53:26.768 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:26.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:26.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:26.768 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:26.768 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:26.768 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:26.768 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:26.768 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:26.768 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:26.778 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:26.778 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:26.788 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:53:26.788 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:53:26.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:26.838 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:27.038 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:27.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:27.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:27.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:27.078 -07 000000429 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:53:27.078 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:27.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 19:53:27.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:53:27.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:27.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:27.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:53:27.178 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:27.178 -07 000000569 INF: Autofocus start
17-03-17 19:53:27.178 -07 000000569 INF: MeasureProfile start
17-03-17 19:53:27.178 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:27.188 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:27.188 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:27.188 -07 000000569 INF: MeasureProfile done
17-03-17 19:53:27.188 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:53:27.188 -07 000000569 INF: Autofocus finished
17-03-17 19:53:27.388 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:27.388 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:27.388 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136583032941932. ----------
17-03-17 19:53:27.388 -07 000000610 INF: Cycle	31	Tile	14	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:27.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28342, sync = True, waitForSettling = True)
17-03-17 19:53:27.398 -07 000000610 INF: Z Motor: Moving to -0.129741 mm, started at -0.136583 mm, distance = 6.84 um
17-03-17 19:53:27.398 -07 000000610 INF: FPGA: Xmit ZDACW 28342\n [Z Motor]
17-03-17 19:53:27.398 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:53:27.408 -07 000000610 INF: FPGA: 'ZDACW 28342' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:27.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:27.408 -07 000000424 INF: FPGA: Recv ZDACR 28342
17-03-17 19:53:27.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:27.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.568 -07 000000501 INF: FPGA: Recv ZSGSRD 29492
17-03-17 19:53:27.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:53:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29487
17-03-17 19:53:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29481
17-03-17 19:53:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29491
17-03-17 19:53:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29491
17-03-17 19:53:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29482
17-03-17 19:53:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:53:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:53:27.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:27.658 -07 000000424 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:53:27.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:27.668 -07 000000382 INF: FPGA: Recv ZPIEZORD 25158
17-03-17 19:53:27.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:27.678 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.325 V. Piezo Error = -9.5 V.
17-03-17 19:53:27.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29488 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29492 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:53:27.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 4, negNoise = 7
17-03-17 19:53:27.678 -07 000000610 INF: Z Motor: After move to -0.129741, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:27.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:53:27.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:27.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:27.688 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:27.688 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:27.688 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:27.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:27.688 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:27.688 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:27.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:27.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:27.688 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:27.688 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:27.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:27.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:27.688 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:53:27.698 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:27.708 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:53:27.708 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:53:27.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:53:27.708 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:53:27.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28519 150\n [Camera]
17-03-17 19:53:27.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:28.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:28.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:28.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:28.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:28.318 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:28.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:28.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:28.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:53:28.328 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:28.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:53:28.508 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28519 791
17-03-17 19:53:28.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:28.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:53:28.698 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:53:28.698 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:28.708 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:28.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:53:28.708 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:53:28.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:28.708 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:28.708 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:53:28.708 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:53:28.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:28.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:28.858 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:28.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:28.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:28.858 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:28.868 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:28.868 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:53:28.868 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:28.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:53:29.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:29.048 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:29.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28519 150' command took 2 ms to send, 1325 ms to get response, and 1336 ms overall
17-03-17 19:53:29.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:29.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129760519647382. ------
17-03-17 19:53:29.058 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:29.058 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13634 mm
17-03-17 19:53:29.168 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:29.168 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:29.178 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 117 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 19:53:29.178 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:29.178 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29783, sync = True, waitForSettling = False)
17-03-17 19:53:29.178 -07 000000431 INF: Z Motor: Moving to -0.136338 mm, started at -0.129761 mm, distance = -6.58 um
17-03-17 19:53:29.178 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:53:29.178 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:53:29.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:29.188 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:53:29.198 -07 000000431 INF: FPGA: Xmit ZDACW 29783\n [Z Motor]
17-03-17 19:53:29.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:53:29.198 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:29.198 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:29.198 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:53:29.198 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:53:29.208 -07 000000431 INF: FPGA: 'ZDACW 29783' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:53:29.208 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:29.218 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:29.218 -07 000000424 INF: FPGA: Recv ZDACR 29783
17-03-17 19:53:29.228 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:53:29.228 -07 000000431 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:53:29.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:53:29.248 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:53:29.248 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:29.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:53:29.258 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:53:29.258 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:29.258 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:29.258 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:29.258 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:53:29.268 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:53:29.378 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:29.378 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:53:29.578 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:53:29.578 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:53:29.618 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:29.618 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:53:29.628 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:29.628 -07 000000382 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:29.628 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:53:29.628 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 19:53:30.238 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 3.988112,
17-03-17 19:53:30.578 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:30.578 -07 000000547 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:53:30.588 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:30.588 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:30.608 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:30.608 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:53:30.608 -07 000000382 INF: Y Motor: Moved to 71.5195 after 1430 ms (table move)
17-03-17 19:53:30.608 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136338 mm (DAC = 29783)
17-03-17 19:53:30.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30518
17-03-17 19:53:30.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:53:30.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.618 -07 000000547 INF: FPGA: Recv ZSGSRD 30512
17-03-17 19:53:30.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.628 -07 000000431 INF: FPGA: Recv ZSGSRD 30509
17-03-17 19:53:30.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30516
17-03-17 19:53:30.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.648 -07 000000431 INF: FPGA: Recv ZSGSRD 30509
17-03-17 19:53:30.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30517
17-03-17 19:53:30.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.668 -07 000000618 INF: FPGA: Recv ZSGSRD 30510
17-03-17 19:53:30.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.678 -07 000000547 INF: FPGA: Recv ZSGSRD 30505
17-03-17 19:53:30.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.688 -07 000000424 INF: FPGA: Recv ZSGSRD 30512
17-03-17 19:53:30.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:30.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30511
17-03-17 19:53:30.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.708 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:30.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 26552
17-03-17 19:53:30.718 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30512 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30505 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30512, posNoise = 6, negNoise = 7
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: After move to -0.136338, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:53:30.718 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:30.768 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 19:53:30.768 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:30.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:30.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:30.768 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:30.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:30.768 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:30.768 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:30.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:30.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:30.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:53:30.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:30.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:53:30.778 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:53:30.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:30.828 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:31.028 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:31.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:31.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:31.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:31.068 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:31.068 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:31.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:53:31.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:53:31.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:31.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:31.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:53:31.168 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:31.168 -07 000000382 INF: Autofocus start
17-03-17 19:53:31.168 -07 000000382 INF: MeasureProfile start
17-03-17 19:53:31.168 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:31.178 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:31.178 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:31.178 -07 000000382 INF: MeasureProfile done
17-03-17 19:53:31.178 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:53:31.178 -07 000000382 INF: Autofocus finished
17-03-17 19:53:31.378 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:31.378 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:53:31.388 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136338912880545. ----------
17-03-17 19:53:31.388 -07 000000610 INF: Cycle	31	Tile	15	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:31.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28324, sync = True, waitForSettling = True)
17-03-17 19:53:31.388 -07 000000610 INF: Z Motor: Moving to -0.129659 mm, started at -0.136339 mm, distance = 6.68 um
17-03-17 19:53:31.388 -07 000000610 INF: FPGA: Xmit ZDACW 28324\n [Z Motor]
17-03-17 19:53:31.388 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:53:31.398 -07 000000610 INF: FPGA: 'ZDACW 28324' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:31.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:31.398 -07 000000618 INF: FPGA: Recv ZDACR 28324
17-03-17 19:53:31.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29473
17-03-17 19:53:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.568 -07 000000618 INF: FPGA: Recv ZSGSRD 29476
17-03-17 19:53:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29467
17-03-17 19:53:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.588 -07 000000618 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:53:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29478
17-03-17 19:53:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29471
17-03-17 19:53:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.618 -07 000000618 INF: FPGA: Recv ZSGSRD 29478
17-03-17 19:53:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.628 -07 000000618 INF: FPGA: Recv ZSGSRD 29468
17-03-17 19:53:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29471
17-03-17 19:53:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:31.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29477
17-03-17 19:53:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:31.658 -07 000000547 INF: FPGA: Recv ZPIEZORD 25168
17-03-17 19:53:31.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:31.668 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.5 V.
17-03-17 19:53:31.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29467 (-128.8 uncal um), Max = 29478 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:53:31.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 5, negNoise = 6
17-03-17 19:53:31.668 -07 000000610 INF: Z Motor: After move to -0.129659, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:31.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:53:31.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:31.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:31.668 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:31.668 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:31.668 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:31.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:31.668 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:31.668 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:31.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:53:31.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:31.668 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 19:53:31.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:31.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:31.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:31.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:31.678 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:31.688 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:53:31.688 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:53:31.688 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:53:31.688 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:53:31.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28501 150\n [Camera]
17-03-17 19:53:31.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:31.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:32.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:32.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:32.298 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:32.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:32.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:32.298 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:32.308 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:32.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:53:32.308 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:32.308 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:53:32.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28501 791
17-03-17 19:53:32.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:32.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:53:32.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:53:32.688 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:32.688 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:53:32.688 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:53:32.688 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:32.698 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:32.698 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:53:32.698 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:32.698 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:53:32.838 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:32.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:32.838 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:32.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:32.838 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:32.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:53:32.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:32.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:32.838 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:32.838 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:53:33.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:33.028 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:33.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28501 150' command took 2 ms to send, 1325 ms to get response, and 1336 ms overall
17-03-17 19:53:33.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:33.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129664156465256. ------
17-03-17 19:53:33.038 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:33.038 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13555 mm
17-03-17 19:53:33.038 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:33.038 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:33.038 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29610, sync = True, waitForSettling = False)
17-03-17 19:53:33.038 -07 000000424 INF: Z Motor: Moving to -0.135546 mm, started at -0.129664 mm, distance = -5.88 um
17-03-17 19:53:33.038 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:53:33.038 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:53:33.048 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:33.048 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:33.048 -07 000000502 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:53:33.058 -07 000000424 INF: FPGA: Xmit ZDACW 29610\n [Z Motor]
17-03-17 19:53:33.058 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:53:33.058 -07 000000569 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:33.058 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:33.058 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:53:33.058 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:53:33.068 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:33.068 -07 000000424 INF: FPGA: 'ZDACW 29610' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:53:33.078 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:33.088 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:33.088 -07 000000561 INF: FPGA: Recv ZDACR 29610
17-03-17 19:53:33.098 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:33.098 -07 000000424 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 19:53:33.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 19:53:33.248 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:53:33.248 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:33.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:53:33.248 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:53:33.248 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:33.248 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:33.248 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:53:33.248 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:53:33.258 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:53:33.268 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:33.268 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:53:33.448 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:53:33.448 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:53:33.488 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:33.488 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:53:33.498 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:33.498 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:33.498 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:53:33.498 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.134 mm/sec
17-03-17 19:53:34.448 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:34.448 -07 000000482 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:53:34.458 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:34.458 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:34.478 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:34.478 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:34.478 -07 000000569 INF: Y Motor: Moved to 72.3496 after 1436 ms (table move)
17-03-17 19:53:34.478 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135546 mm (DAC = 29610)
17-03-17 19:53:34.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.478 -07 000000424 INF: FPGA: Recv ZSGSRD 30394
17-03-17 19:53:34.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:34.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.488 -07 000000569 INF: FPGA: Recv ZSGSRD 30384
17-03-17 19:53:34.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.498 -07 000000424 INF: FPGA: Recv ZSGSRD 30386
17-03-17 19:53:34.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.508 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.508 -07 000000502 INF: FPGA: Recv ZSGSRD 30389
17-03-17 19:53:34.518 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.518 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30392
17-03-17 19:53:34.528 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.528 -07 000000502 INF: FPGA: Recv ZSGSRD 30400
17-03-17 19:53:34.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.538 -07 000000569 INF: FPGA: Recv ZSGSRD 30382
17-03-17 19:53:34.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30389
17-03-17 19:53:34.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.558 -07 000000547 INF: FPGA: Recv ZSGSRD 30384
17-03-17 19:53:34.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:34.568 -07 000000502 INF: FPGA: Recv ZSGSRD 30395
17-03-17 19:53:34.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:34.578 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:34.578 -07 000000547 INF: FPGA: Recv ZPIEZORD 26375
17-03-17 19:53:34.588 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -8.8 V.
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30390 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30389 (-134.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30382 (-134.7 uncal um), Max = 30400 (-134.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30390, posNoise = 10, negNoise = 8
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: After move to -0.135546, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:53:34.588 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:34.638 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:53:34.638 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:34.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:34.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:34.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:34.638 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:34.638 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:34.638 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:34.638 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:34.638 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:34.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:34.648 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:34.658 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:53:34.658 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:53:34.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:34.708 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:34.908 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:34.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:53:34.948 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:34.948 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:34.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:53:35.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:53:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:35.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:53:35.048 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:35.048 -07 000000561 INF: Autofocus start
17-03-17 19:53:35.048 -07 000000561 INF: MeasureProfile start
17-03-17 19:53:35.048 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:35.058 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:53:35.058 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:35.058 -07 000000561 INF: MeasureProfile done
17-03-17 19:53:35.058 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:53:35.058 -07 000000561 INF: Autofocus finished
17-03-17 19:53:35.258 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:35.258 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:53:35.258 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135555158999251. ----------
17-03-17 19:53:35.268 -07 000000610 INF: Cycle	31	Tile	16	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:35.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28134, sync = True, waitForSettling = True)
17-03-17 19:53:35.268 -07 000000610 INF: Z Motor: Moving to -0.128789 mm, started at -0.135555 mm, distance = 6.77 um
17-03-17 19:53:35.288 -07 000000610 INF: FPGA: Xmit ZDACW 28134\n [Z Motor]
17-03-17 19:53:35.288 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:53:35.298 -07 000000610 INF: FPGA: 'ZDACW 28134' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:53:35.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:35.308 -07 000000382 INF: FPGA: Recv ZDACR 28134
17-03-17 19:53:35.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:53:35.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.468 -07 000000482 INF: FPGA: Recv ZSGSRD 29329
17-03-17 19:53:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.478 -07 000000424 INF: FPGA: Recv ZSGSRD 29342
17-03-17 19:53:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:53:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.498 -07 000000502 INF: FPGA: Recv ZSGSRD 29341
17-03-17 19:53:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.508 -07 000000569 INF: FPGA: Recv ZSGSRD 29335
17-03-17 19:53:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.518 -07 000000424 INF: FPGA: Recv ZSGSRD 29336
17-03-17 19:53:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:53:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:53:35.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.548 -07 000000569 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:53:35.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:35.558 -07 000000424 INF: FPGA: Recv ZSGSRD 29343
17-03-17 19:53:35.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:35.568 -07 000000382 INF: FPGA: Recv ZPIEZORD 24985
17-03-17 19:53:35.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:35.578 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.6 V.
17-03-17 19:53:35.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29338 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29338 (-128.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29329 (-128.0 uncal um), Max = 29344 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:53:35.578 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29338, posNoise = 6, negNoise = 9
17-03-17 19:53:35.578 -07 000000610 INF: Z Motor: After move to -0.128789, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:35.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 19:53:35.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:35.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:35.578 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:35.578 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:35.578 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:35.578 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:35.578 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:35.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:35.578 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:35.578 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:35.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:35.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:35.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:53:35.588 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:35.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:35.588 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:35.598 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.016692,
17-03-17 19:53:35.598 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:53:35.598 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:53:35.598 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:35.598 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:53:35.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28311 150\n [Camera]
17-03-17 19:53:35.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:36.218 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:36.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:36.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:36.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:36.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:36.218 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:36.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:53:36.228 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:36.228 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:36.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:53:36.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28311 791
17-03-17 19:53:36.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:36.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:53:36.608 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:53:36.608 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:36.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:53:36.608 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:53:36.608 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:36.608 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:36.618 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:36.618 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:53:36.618 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:53:36.728 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:36.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:53:36.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:53:36.758 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:36.758 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:36.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:53:36.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:53:36.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:53:36.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:36.768 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:36.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:53:36.948 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:53:36.948 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:36.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28311 150' command took 2 ms to send, 1326 ms to get response, and 1351 ms overall
17-03-17 19:53:36.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:36.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128796887826118. ------
17-03-17 19:53:37.088 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:37.088 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13540 mm
17-03-17 19:53:37.088 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:37.088 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:37.088 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:53:37.088 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:53:37.088 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29577, sync = True, waitForSettling = False)
17-03-17 19:53:37.088 -07 000000569 INF: Z Motor: Moving to -0.135395 mm, started at -0.128797 mm, distance = -6.60 um
17-03-17 19:53:37.098 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:37.098 -07 000000569 INF: FPGA: Xmit ZDACW 29577\n [Z Motor]
17-03-17 19:53:37.098 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:53:37.108 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:37.108 -07 000000569 INF: FPGA: 'ZDACW 29577' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:53:37.108 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:53:37.118 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:37.118 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:53:37.118 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:37.118 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:37.118 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:53:37.128 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:37.128 -07 000000478 INF: FPGA: Recv ZDACR 29577
17-03-17 19:53:37.138 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:37.138 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:37.138 -07 000000569 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:53:37.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:53:37.148 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:53:37.148 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:37.148 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:37.158 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:53:37.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:53:37.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:53:37.158 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:37.168 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 19:53:37.168 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:53:37.318 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:37.318 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:53:37.508 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:53:37.508 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:53:37.548 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:37.548 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:53:37.558 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:37.558 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:37.558 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:53:37.558 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 19:53:38.508 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:38.508 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:53:38.518 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:38.518 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:38.538 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:38.538 -07 000000502 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:53:38.538 -07 000000502 INF: Y Motor: Moved to 73.1763 after 1446 ms (table move)
17-03-17 19:53:38.538 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135395 mm (DAC = 29577)
17-03-17 19:53:38.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30361
17-03-17 19:53:38.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:38.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30364
17-03-17 19:53:38.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.558 -07 000000561 INF: FPGA: Recv ZSGSRD 30368
17-03-17 19:53:38.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.568 -07 000000561 INF: FPGA: Recv ZSGSRD 30362
17-03-17 19:53:38.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.578 -07 000000561 INF: FPGA: Recv ZSGSRD 30372
17-03-17 19:53:38.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.588 -07 000000502 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:53:38.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.598 -07 000000561 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:53:38.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.608 -07 000000429 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:53:38.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30362
17-03-17 19:53:38.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:38.628 -07 000000569 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:53:38.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.638 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:38.638 -07 000000618 INF: FPGA: Recv ZPIEZORD 26382
17-03-17 19:53:38.648 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.8 V.
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30361 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 6, negNoise = 5
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: After move to -0.135395, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:53:38.648 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:38.698 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 19:53:38.698 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:38.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:38.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:38.698 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:38.698 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:38.698 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:38.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:38.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:53:38.698 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:38.708 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:38.708 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:38.708 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:38.708 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:53:38.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:38.758 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:38.958 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:38.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:38.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:38.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:38.998 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:38.998 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:38.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:53:39.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:53:39.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:39.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:39.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:53:39.098 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:39.098 -07 000000478 INF: Autofocus start
17-03-17 19:53:39.098 -07 000000478 INF: MeasureProfile start
17-03-17 19:53:39.098 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:39.108 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:39.108 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:39.108 -07 000000478 INF: MeasureProfile done
17-03-17 19:53:39.108 -07 000000478 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 19:53:39.108 -07 000000478 INF: Autofocus finished
17-03-17 19:53:39.308 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:39.308 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:39.308 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135400977907848. ----------
17-03-17 19:53:39.308 -07 000000610 INF: Cycle	31	Tile	17	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:39.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28083, sync = True, waitForSettling = True)
17-03-17 19:53:39.318 -07 000000610 INF: Z Motor: Moving to -0.128556 mm, started at -0.135401 mm, distance = 6.85 um
17-03-17 19:53:39.318 -07 000000610 INF: FPGA: Xmit ZDACW 28083\n [Z Motor]
17-03-17 19:53:39.318 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:53:39.328 -07 000000610 INF: FPGA: 'ZDACW 28083' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:39.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:39.328 -07 000000618 INF: FPGA: Recv ZDACR 28083
17-03-17 19:53:39.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.488 -07 000000478 INF: FPGA: Recv ZSGSRD 29299
17-03-17 19:53:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29306
17-03-17 19:53:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.508 -07 000000429 INF: FPGA: Recv ZSGSRD 29294
17-03-17 19:53:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29300
17-03-17 19:53:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.528 -07 000000561 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:53:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:53:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.548 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-17 19:53:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.558 -07 000000424 INF: FPGA: Recv ZSGSRD 29297
17-03-17 19:53:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.568 -07 000000569 INF: FPGA: Recv ZSGSRD 29293
17-03-17 19:53:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:39.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29308
17-03-17 19:53:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:39.588 -07 000000618 INF: FPGA: Recv ZPIEZORD 24996
17-03-17 19:53:39.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:39.598 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 19:53:39.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29301 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29293 (-127.7 uncal um), Max = 29313 (-127.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:53:39.598 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29301, posNoise = 12, negNoise = 8
17-03-17 19:53:39.598 -07 000000610 INF: Z Motor: After move to -0.128556, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:39.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:53:39.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:39.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:39.598 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:39.598 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:39.598 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:39.598 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:39.598 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:39.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:39.598 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:39.598 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:39.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:39.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:39.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:39.608 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:39.608 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:53:39.608 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:39.618 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:53:39.618 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:53:39.618 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:39.618 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:39.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28259 150\n [Camera]
17-03-17 19:53:39.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:40.218 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:40.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:40.228 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:40.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:40.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:40.228 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:40.228 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:40.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:53:40.228 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:40.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:53:40.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 791
17-03-17 19:53:40.568 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:40.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:53:40.618 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:53:40.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:40.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:53:40.618 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:53:40.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:40.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:40.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:40.628 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:53:40.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:53:40.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:40.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:40.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:40.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:40.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:40.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:40.768 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:40.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:53:40.768 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:40.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:53:40.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:40.948 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:40.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28259 150' command took 2 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-17 19:53:40.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:40.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128559191976873. ------
17-03-17 19:53:40.958 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:40.958 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13500 mm
17-03-17 19:53:40.958 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:40.958 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:41.078 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 19:53:41.078 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:53:41.078 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:53:41.078 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29491, sync = True, waitForSettling = False)
17-03-17 19:53:41.078 -07 000000502 INF: Z Motor: Moving to -0.135001 mm, started at -0.128559 mm, distance = -6.44 um
17-03-17 19:53:41.088 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:41.088 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.000345,
17-03-17 19:53:41.088 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:53:41.098 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:53:41.098 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:41.098 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:41.098 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-17 19:53:41.098 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:41.108 -07 000000502 INF: FPGA: Xmit ZDACW 29491\n [Z Motor]
17-03-17 19:53:41.108 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:53:41.118 -07 000000502 INF: FPGA: 'ZDACW 29491' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 19:53:41.128 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:41.138 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:41.138 -07 000000593 INF: FPGA: Recv ZDACR 29491
17-03-17 19:53:41.148 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:53:41.148 -07 000000502 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-17 19:53:41.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:53:41.168 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:53:41.168 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:41.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:53:41.168 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:53:41.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:41.168 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:41.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:53:41.168 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:41.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:53:41.298 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:41.298 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 19:53:41.498 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:53:41.498 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 19:53:41.528 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:41.538 -07 000000478 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:53:41.538 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:53:41.538 -07 000000424 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:41.538 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:53:41.538 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.846 mm, average velocity = 2.079 mm/sec
17-03-17 19:53:41.728 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:42.488 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:42.488 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:53:42.498 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:42.498 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:42.508 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:42.508 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:53:42.508 -07 000000424 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-17 19:53:42.508 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135001 mm (DAC = 29491)
17-03-17 19:53:42.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.518 -07 000000382 INF: FPGA: Recv ZSGSRD 30308
17-03-17 19:53:42.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:53:42.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.518 -07 000000382 INF: FPGA: Recv ZSGSRD 30308
17-03-17 19:53:42.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:42.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.528 -07 000000382 INF: FPGA: Recv ZSGSRD 30300
17-03-17 19:53:42.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30304
17-03-17 19:53:42.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30305
17-03-17 19:53:42.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.558 -07 000000478 INF: FPGA: Recv ZSGSRD 30297
17-03-17 19:53:42.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.568 -07 000000478 INF: FPGA: Recv ZSGSRD 30311
17-03-17 19:53:42.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.578 -07 000000478 INF: FPGA: Recv ZSGSRD 30307
17-03-17 19:53:42.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.588 -07 000000478 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:53:42.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:42.598 -07 000000478 INF: FPGA: Recv ZSGSRD 30298
17-03-17 19:53:42.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.608 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:42.608 -07 000000561 INF: FPGA: Recv ZPIEZORD 26331
17-03-17 19:53:42.618 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.8 V.
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30305 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30297 (-134.2 uncal um), Max = 30311 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30305, posNoise = 6, negNoise = 8
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: After move to -0.135001, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 101 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:53:42.618 -07 000000618 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:42.668 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 19:53:42.668 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:42.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:42.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:42.668 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:42.668 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:42.668 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:42.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:42.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:53:42.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:42.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:42.678 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:42.678 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:53:42.678 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:53:42.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:42.728 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:42.928 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:42.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:42.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:42.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:53:42.968 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:42.968 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:42.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:53:43.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:53:43.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:43.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:53:43.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:53:43.068 -07 000000429 INF: Autofocus start
17-03-17 19:53:43.068 -07 000000429 INF: MeasureProfile start
17-03-17 19:53:43.068 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:43.068 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:43.078 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:53:43.078 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:43.078 -07 000000429 INF: MeasureProfile done
17-03-17 19:53:43.078 -07 000000429 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:53:43.078 -07 000000429 INF: Autofocus finished
17-03-17 19:53:43.278 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:43.278 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:43.278 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135009100967201. ----------
17-03-17 19:53:43.278 -07 000000610 INF: Cycle	31	Tile	18	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:43.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27968, sync = True, waitForSettling = True)
17-03-17 19:53:43.288 -07 000000610 INF: Z Motor: Moving to -0.128029 mm, started at -0.135009 mm, distance = 6.98 um
17-03-17 19:53:43.288 -07 000000610 INF: FPGA: Xmit ZDACW 27968\n [Z Motor]
17-03-17 19:53:43.288 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:53:43.298 -07 000000610 INF: FPGA: 'ZDACW 27968' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:43.298 -07 000000382 INF: FPGA: Recv ZDACR 27968
17-03-17 19:53:43.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29219
17-03-17 19:53:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.468 -07 000000569 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:53:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29223
17-03-17 19:53:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.488 -07 000000593 INF: FPGA: Recv ZSGSRD 29218
17-03-17 19:53:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.498 -07 000000478 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:53:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.508 -07 000000593 INF: FPGA: Recv ZSGSRD 29218
17-03-17 19:53:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.518 -07 000000593 INF: FPGA: Recv ZSGSRD 29219
17-03-17 19:53:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:53:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.538 -07 000000424 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:53:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:43.548 -07 000000561 INF: FPGA: Recv ZSGSRD 29216
17-03-17 19:53:43.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:43.558 -07 000000541 INF: FPGA: Recv ZPIEZORD 24871
17-03-17 19:53:43.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:43.568 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.5 V.
17-03-17 19:53:43.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29219 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29220 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29216 (-127.2 uncal um), Max = 29223 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:53:43.568 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29219, posNoise = 4, negNoise = 3
17-03-17 19:53:43.568 -07 000000610 INF: Z Motor: After move to -0.128029, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:43.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:53:43.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:43.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:43.568 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:43.568 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:43.568 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:43.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:43.568 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:43.568 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:43.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:43.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:43.568 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:53:43.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:43.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:53:43.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:43.578 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:53:43.578 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:43.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:43.578 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:53:43.588 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:53:43.588 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:53:43.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28145 150\n [Camera]
17-03-17 19:53:43.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:44.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:44.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:44.198 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:44.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:44.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:44.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:44.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:44.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:53:44.198 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:44.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:53:44.388 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28145 791
17-03-17 19:53:44.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:44.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:53:44.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:53:44.578 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:44.578 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:44.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:53:44.588 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:53:44.588 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:53:44.588 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:44.588 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:44.588 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:53:44.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:44.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:44.738 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:44.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:44.738 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:44.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:53:44.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:44.738 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:44.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:44.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 19:53:44.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:53:44.928 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:44.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28145 150' command took 2 ms to send, 1331 ms to get response, and 1336 ms overall
17-03-17 19:53:44.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:53:44.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128032406581248. ------
17-03-17 19:53:44.928 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:44.928 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13440 mm
17-03-17 19:53:44.928 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:53:44.938 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:44.938 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:53:44.938 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:53:44.938 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:53:44.938 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:53:44.938 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29361, sync = True, waitForSettling = False)
17-03-17 19:53:44.938 -07 000000618 INF: Z Motor: Moving to -0.134406 mm, started at -0.128032 mm, distance = -6.37 um
17-03-17 19:53:44.948 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:44.948 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:53:44.958 -07 000000618 INF: FPGA: Xmit ZDACW 29361\n [Z Motor]
17-03-17 19:53:44.958 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:53:44.958 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:44.958 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:53:44.958 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:53:44.958 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:53:44.968 -07 000000618 INF: FPGA: 'ZDACW 29361' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:53:44.968 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:44.968 -07 000000478 INF: FPGA: Recv ZDACR 29361
17-03-17 19:53:44.978 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:53:44.978 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:44.978 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:53:45.138 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:53:45.138 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:53:45.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 19:53:45.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:53:45.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:45.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:53:45.138 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:53:45.138 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:45.148 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:45.148 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:53:45.148 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:53:45.158 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:53:45.348 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:53:45.348 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:53:45.368 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:45.378 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:53:45.378 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:53:45.378 -07 000000424 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:45.378 -07 000000424 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:53:45.378 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 19:53:46.328 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:46.328 -07 000000431 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:53:46.338 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.338 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:46.348 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:46.348 -07 000000424 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:53:46.348 -07 000000424 INF: Y Motor: Moved to 74.8325 after 1412 ms (table move)
17-03-17 19:53:46.348 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134406 mm (DAC = 29361)
17-03-17 19:53:46.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.358 -07 000000431 INF: FPGA: Recv ZSGSRD 30208
17-03-17 19:53:46.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:53:46.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.358 -07 000000561 INF: FPGA: Recv ZSGSRD 30208
17-03-17 19:53:46.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:46.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30211
17-03-17 19:53:46.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.378 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.378 -07 000000478 INF: FPGA: Recv ZSGSRD 30201
17-03-17 19:53:46.388 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.388 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.388 -07 000000431 INF: FPGA: Recv ZSGSRD 30207
17-03-17 19:53:46.398 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.398 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.398 -07 000000561 INF: FPGA: Recv ZSGSRD 30209
17-03-17 19:53:46.408 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.408 -07 000000431 INF: FPGA: Recv ZSGSRD 30212
17-03-17 19:53:46.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.418 -07 000000478 INF: FPGA: Recv ZSGSRD 30213
17-03-17 19:53:46.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30214
17-03-17 19:53:46.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:46.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30215
17-03-17 19:53:46.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.448 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:46.448 -07 000000431 INF: FPGA: Recv ZPIEZORD 26175
17-03-17 19:53:46.458 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -8.9 V.
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30210 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30210 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30201 (-133.6 uncal um), Max = 30215 (-133.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30210, posNoise = 5, negNoise = 9
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: After move to -0.134406, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: Settle wait time = 1415 ms, measure time = 103 ms (allowed 150 ms), total time = 1518 ms
17-03-17 19:53:46.458 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:53:46.498 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.026244,
17-03-17 19:53:46.508 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 19:53:46.508 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:53:46.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:46.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:46.508 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:46.508 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:46.508 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:53:46.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:46.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:46.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:53:46.518 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:46.518 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:53:46.528 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:53:46.528 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:53:46.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:53:46.578 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:53:46.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 30. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:46.778 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:53:46.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:53:46.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:53:46.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611006392, 0x0, 559484976) start.
17-03-17 19:53:46.818 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:53:46.818 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:53:46.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 290 ms overall
17-03-17 19:53:46.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611006392, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:53:46.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:46.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:53:46.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:53:46.918 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:53:46.918 -07 000000478 INF: Autofocus start
17-03-17 19:53:46.918 -07 000000478 INF: MeasureProfile start
17-03-17 19:53:46.918 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:53:46.928 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:53:46.928 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:53:46.928 -07 000000478 INF: MeasureProfile done
17-03-17 19:53:46.928 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:53:46.928 -07 000000478 INF: Autofocus finished
17-03-17 19:53:47.128 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:53:47.128 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:53:47.128 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134398800813734. ----------
17-03-17 19:53:47.138 -07 000000610 INF: Cycle	31	Tile	19	Exposure Settings		A	406	G	195	T	195	C	406
17-03-17 19:53:47.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27885, sync = True, waitForSettling = True)
17-03-17 19:53:47.138 -07 000000610 INF: Z Motor: Moving to -0.127649 mm, started at -0.134399 mm, distance = 6.75 um
17-03-17 19:53:47.138 -07 000000610 INF: FPGA: Xmit ZDACW 27885\n [Z Motor]
17-03-17 19:53:47.138 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:53:47.148 -07 000000610 INF: FPGA: 'ZDACW 27885' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:53:47.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:53:47.148 -07 000000547 INF: FPGA: Recv ZDACR 27885
17-03-17 19:53:47.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:53:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:53:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29157
17-03-17 19:53:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.328 -07 000000462 INF: FPGA: Recv ZSGSRD 29161
17-03-17 19:53:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.338 -07 000000541 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:53:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.348 -07 000000593 INF: FPGA: Recv ZSGSRD 29156
17-03-17 19:53:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.358 -07 000000382 INF: FPGA: Recv ZSGSRD 29157
17-03-17 19:53:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29163
17-03-17 19:53:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29162
17-03-17 19:53:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.388 -07 000000382 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:53:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:53:47.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:53:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:53:47.408 -07 000000431 INF: FPGA: Recv ZPIEZORD 24818
17-03-17 19:53:47.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:47.418 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.255 V. Piezo Error = -9.5 V.
17-03-17 19:53:47.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29158 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29158 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29154 (-126.8 uncal um), Max = 29163 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:53:47.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29158, posNoise = 5, negNoise = 4
17-03-17 19:53:47.418 -07 000000610 INF: Z Motor: After move to -0.127649, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:53:47.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:53:47.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:53:47.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:53:47.418 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:53:47.418 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:53:47.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:53:47.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:53:47.418 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:53:47.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:53:47.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:53:47.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:53:47.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:53:47.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:53:47.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:53:47.418 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:53:47.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:53:47.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:53:47.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:53:47.428 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:53:47.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:53:47.428 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:53:47.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28062 150\n [Camera]
17-03-17 19:53:47.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:53:48.038 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:53:48.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:53:48.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:48.038 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:48.038 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 19:53:48.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:53:48.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:53:48.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:48.048 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:48.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:53:48.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28062 791
17-03-17 19:53:48.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:53:48.418 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:53:48.418 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:53:48.418 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:48.418 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:53:48.418 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:53:48.418 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:48.428 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:53:48.428 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:53:48.428 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:53:48.438 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:53:48.578 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:53:48.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:53:48.578 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:53:48.578 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:53:48.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:53:48.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:53:48.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:53:48.578 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:53:48.578 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:53:48.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:53:48.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:53:48.878 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:53:48.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28062 150' command took 2 ms to send, 1437 ms to get response, and 1445 ms overall
17-03-17 19:53:48.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:53:48.978 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:53:48.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:48.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:53:48.978 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:53:48.978 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:53:48.978 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:53:48.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:53:48.978 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:53:48.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:53:48.988 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:53:49.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 19:53:49.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:53:49.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 19:53:49.078 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 19:53:49.088 -07 000000610 INF: Imaging Cycle 31: ScanTilesCommand Cycle 31 time end. Duration was 152831 ms.
17-03-17 19:53:49.088 -07 000000610 INF: =================== Cycle #31 ===================
17-03-17 19:53:49.088 -07 000000610 INF: ===================  ===================
17-03-17 19:53:49.088 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:53:49.088 -07 000000593 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 19:53:49.098 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:49.098 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 19:53:49.098 -07 000000431 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 31, FrontChillerTemperature: 4.026244, FrontChillerHeatSinkTemperature: 0.249015, AmbientTemperature: 18.95974, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.81161, GreenLEDSensorTemperature: 25.9169, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 19:53:49.108 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.