17-03-17 19:53:49.158 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:53:49.168 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:53:49.168 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 19:53:49.168 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:49.168 -07 000000541 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:53:49.178 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:53:49.178 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:49.178 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:53:49.178 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:53:49.178 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:53:49.288 -07 000000593 INF: FPGA: Recv YMVTO 154378 871
17-03-17 19:53:49.288 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 19:53:49.288 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 19:53:49.288 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:53:49.288 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 19:53:51.728 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:53:51.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=404, R2=426, Total=830. Warn if over 250 bubbles per interval.
17-03-17 19:53:51.858 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.985358,
17-03-17 19:53:52.288 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:53:52.288 -07 000000593 INF: FPGA: Recv YRDPOS 154380
17-03-17 19:53:52.298 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:53:52.298 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:53:52.308 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:53:52.308 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 19:53:52.308 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3148 ms
17-03-17 19:53:52.318 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 60° ===================
17-03-17 19:53:52.318 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:53:52.318 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:53:52.318 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:53:52.328 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:53:52.328 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:53:52.328 -07 000000431 INF: FPGA: Recv TEC2EN 
17-03-17 19:53:52.338 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:53:52.338 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 60° ===================
17-03-17 19:53:52.338 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:53:52.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:53:52.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:53:52.368 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:53:52.368 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:53:52.368 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:53:52.668 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:53:52.688 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:53:52.688 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:53:52.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:53:52.758 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:53:52.758 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:53:52.858 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:53:52.858 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:53:52.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:53:52.888 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:53:52.888 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:53:52.888 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:53:53.018 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:53:53.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:53:56.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:53:56.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:53:56.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:53:56.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:53:56.728 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 19:53:56.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=407, R2=429, Total=836. Warn if over 250 bubbles per interval.
17-03-17 19:53:57.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:53:57.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:53:57.118 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:53:57.118 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:53:57.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.978563,
17-03-17 19:53:57.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:53:57.278 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:53:57.278 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:53:57.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:53:57.438 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:53:57.438 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:53:57.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:53:57.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:53:57.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:53:58.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:53:58.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:53:58.058 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:53:58.058 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:53:59.278 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:53:59.278 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:53:59.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:53:59.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:53:59.298 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:53:59.298 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:53:59.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:53:59.458 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:53:59.458 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:53:59.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:53:59.528 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:53:59.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:53:59.628 -07 000000610 INF: =================== Cycle #32, Pumping Reagent CMS (4) ===================
17-03-17 19:53:59.628 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:53:59.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:53:59.658 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:53:59.658 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:53:59.658 -07 000000610 INF: =================== Cycle #32, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:53:59.788 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:53:59.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:01.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:01.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:01.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:01.728 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:54:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=408, R2=429, Total=837. Warn if over 250 bubbles per interval.
17-03-17 19:54:01.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:01.748 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:54:01.748 -07 000000610 INF: =================== Cycle #32, Pumping Reagent CMS (4) ===================
17-03-17 19:54:01.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:01.908 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:54:01.908 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:54:02.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:02.068 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:54:02.068 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:54:02.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:54:02.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:54:02.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:02.578 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.970374,
17-03-17 19:54:02.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:02.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:02.688 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:54:02.688 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:03.908 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:54:03.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:54:03.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:03.928 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:54:03.928 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:54:03.928 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:54:04.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:54:04.098 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:54:04.098 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:54:04.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:04.168 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:54:04.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:54:04.268 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:04.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:54:04.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:04.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:54:04.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:54:04.298 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:54:04.428 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:54:04.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:05.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:05.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:05.368 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:54:05.368 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:05.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:05.528 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:54:05.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:54:05.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:05.688 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:54:05.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:54:05.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:54:05.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:54:05.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:06.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:06.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:06.308 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:54:06.308 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:06.308 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:54:06.308 -07 000000593 INF: WaitCommand(10000) start
17-03-17 19:54:06.308 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:54:06.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 19:54:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=412, R2=433, Total=845. Warn if over 250 bubbles per interval.
17-03-17 19:54:07.528 -07 000000431 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:54:07.528 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 19:54:07.558 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:54:07.558 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:54:07.688 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:54:07.728 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:07.938 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.98264,
17-03-17 19:54:09.258 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:09.288 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:09.708 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:09.738 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:09.738 -07 000000431 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:54:09.738 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:54:09.738 -07 000000431 INF: ===================  ===================
17-03-17 19:54:11.728 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:54:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=412, R2=434, Total=846. Warn if over 250 bubbles per interval.
17-03-17 19:54:13.298 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.985358,
17-03-17 19:54:16.318 -07 000000593 INF: WaitCommand(10000) end
17-03-17 19:54:16.318 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:16.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:54:16.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:16.348 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:54:16.348 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:54:16.348 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:54:16.478 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:54:16.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:16.728 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:54:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=412, R2=434, Total=846. Warn if over 250 bubbles per interval.
17-03-17 19:54:18.658 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.988112,
17-03-17 19:54:21.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 11
17-03-17 19:54:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=11, R2=8, Total=19. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=423, R2=442, Total=865. Warn if over 250 bubbles per interval.
17-03-17 19:54:22.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:22.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:23.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:23.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:23.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:23.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:23.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:24.018 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.999021,
17-03-17 19:54:24.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:24.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:24.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:24.478 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:54:24.478 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:24.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:24.638 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:54:24.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:54:24.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:24.808 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:54:24.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:54:24.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:54:24.938 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:54:24.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:25.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:25.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:25.428 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:54:25.428 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:26.638 -07 000000610 INF: AsyncDelayTimer waited 1208ms
17-03-17 19:54:26.638 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:54:26.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:26.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:54:26.658 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:54:26.658 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:54:26.728 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 13
17-03-17 19:54:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=13, R2=9, Total=22. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=436, R2=451, Total=887. Warn if over 250 bubbles per interval.
17-03-17 19:54:26.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:54:26.888 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:54:26.888 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:54:26.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:26.958 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:54:26.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:54:27.058 -07 000000610 INF: =================== Cycle #32, Pumping Reagent IMT (1) ===================
17-03-17 19:54:27.058 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:54:27.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:27.088 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:54:27.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:54:27.088 -07 000000610 INF: =================== Cycle #32, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:54:27.218 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:54:27.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:28.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:28.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:29.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:29.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:29.178 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:54:29.178 -07 000000610 INF: =================== Cycle #32, Pumping Reagent IMT (1) ===================
17-03-17 19:54:29.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:29.338 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:54:29.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:54:29.378 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.026244,
17-03-17 19:54:29.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:29.498 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:54:29.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:54:29.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:54:29.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:54:29.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:30.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:30.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:30.118 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:54:30.118 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:31.338 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:54:31.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:54:31.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:31.358 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:54:31.358 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:54:31.358 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:54:31.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:54:31.608 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:54:31.608 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:54:31.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:54:31.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:54:31.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:54:31.728 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:54:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=436, R2=451, Total=887. Warn if over 250 bubbles per interval.
17-03-17 19:54:31.778 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:31.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:54:31.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:31.808 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:54:31.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:54:31.808 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:54:31.938 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:54:31.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:54:32.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:32.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:32.878 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:54:32.878 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:54:33.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:33.038 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:54:33.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:54:33.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:54:33.198 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:54:33.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:54:33.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:54:33.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:54:33.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:33.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:54:33.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:54:33.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:54:33.818 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:33.818 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 65° ===================
17-03-17 19:54:33.818 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:54:33.818 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:54:33.818 -07 000000593 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:54:33.828 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:54:33.828 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:54:33.828 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 19:54:33.838 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:54:33.838 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 65° ===================
17-03-17 19:54:33.838 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:54:33.838 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:54:34.738 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.016692,
17-03-17 19:54:36.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 19:54:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=455, Total=896. Warn if over 250 bubbles per interval.
17-03-17 19:54:40.098 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.009895,
17-03-17 19:54:41.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:54:41.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:54:45.458 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.003063,
17-03-17 19:54:46.728 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:54:46.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:54:50.818 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.997626,
17-03-17 19:54:51.738 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:54:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:54:56.178 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.993549,
17-03-17 19:54:56.738 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:54:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:01.538 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.016692,
17-03-17 19:55:01.728 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:01.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:03.848 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:55:03.848 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:03.848 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:55:03.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:03.978 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:55:03.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:55:03.978 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:55:04.108 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:55:04.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:04.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:04.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:04.718 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:55:04.718 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:04.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:04.878 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:55:04.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:55:05.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:05.038 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:55:05.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:55:05.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:55:05.168 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:55:05.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:05.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:05.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:05.658 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:55:05.658 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:55:05.658 -07 000000502 INF: WaitCommand(30000) start
17-03-17 19:55:05.658 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:55:05.658 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:55:06.728 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:06.878 -07 000000541 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:55:06.878 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 19:55:06.898 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.993549,
17-03-17 19:55:06.908 -07 000000541 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:55:06.908 -07 000000541 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:55:07.038 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:55:07.078 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:09.418 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:09.448 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:09.868 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:09.898 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:09.898 -07 000000541 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:55:09.898 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:55:09.898 -07 000000541 INF: ===================  ===================
17-03-17 19:55:11.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:11.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:12.258 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.000345,
17-03-17 19:55:16.728 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:16.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:17.618 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.990831,
17-03-17 19:55:21.728 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:21.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:22.978 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.973092,
17-03-17 19:55:26.728 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:26.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:28.338 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.997626,
17-03-17 19:55:31.728 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:31.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:33.698 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.983999,
17-03-17 19:55:35.668 -07 000000502 INF: WaitCommand(30000) end
17-03-17 19:55:35.668 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 22° ===================
17-03-17 19:55:35.668 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:55:35.668 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:55:35.678 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:55:35.678 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:55:35.678 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:55:35.678 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 19:55:35.688 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:55:35.688 -07 000000610 INF: =================== Cycle #32, Flow Cell Temp 22° ===================
17-03-17 19:55:35.688 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:55:35.688 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:35.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:55:35.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:35.728 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:55:35.728 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:55:35.728 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:55:35.858 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:55:35.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:36.728 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=441, R2=456, Total=897. Warn if over 250 bubbles per interval.
17-03-17 19:55:39.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:39.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:39.058 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.994908,
17-03-17 19:55:39.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:39.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:39.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:39.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:39.958 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:55:39.958 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:40.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:40.118 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:55:40.118 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:55:40.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:40.278 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:55:40.278 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:55:40.278 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:55:40.408 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:55:40.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:40.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:40.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:40.898 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:55:40.898 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:55:41.728 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:55:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:55:42.118 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:55:42.118 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:55:42.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:42.138 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:55:42.138 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:55:42.138 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:55:42.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:55:42.308 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:55:42.308 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:55:42.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:42.378 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:55:42.378 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:55:42.478 -07 000000610 INF: =================== Cycle #32, Pumping Reagent USM (2) ===================
17-03-17 19:55:42.478 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:55:42.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:42.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:55:42.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:55:42.508 -07 000000610 INF: =================== Cycle #32, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:55:42.638 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:55:42.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:44.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:44.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:44.418 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.989471,
17-03-17 19:55:44.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:44.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:44.598 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:55:44.598 -07 000000610 INF: =================== Cycle #32, Pumping Reagent USM (2) ===================
17-03-17 19:55:44.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:44.758 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:55:44.758 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:55:44.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:44.918 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:55:44.918 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:55:44.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:55:45.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:55:45.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:45.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:45.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:45.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:55:45.538 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:55:46.728 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:55:46.758 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:55:46.758 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:55:46.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:46.778 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:55:46.778 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:55:46.778 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:55:46.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:55:46.948 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:55:46.948 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:55:46.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:47.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:55:47.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:55:47.118 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:47.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:55:47.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:47.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:55:47.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:55:47.148 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:55:47.278 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:55:47.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:48.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:48.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:48.218 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:55:48.218 -07 000000610 INF: =================== Cycle #32, Pumping Reagent PR2 (3) ===================
17-03-17 19:55:48.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:48.378 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:55:48.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:55:48.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:55:48.538 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:55:48.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:55:48.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:55:48.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:55:48.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:49.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:49.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:49.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:55:49.158 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:55:49.158 -07 000000478 INF: WaitCommand(10000) start
17-03-17 19:55:49.158 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:55:49.158 -07 000000482 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:55:49.778 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.007176,
17-03-17 19:55:50.378 -07 000000482 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:55:50.378 -07 000000482 INF: LanePump: Xmit /1?\r
17-03-17 19:55:50.408 -07 000000482 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:55:50.408 -07 000000482 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:55:50.538 -07 000000482 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:55:50.578 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:51.728 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:55:52.108 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:52.138 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:55:52.558 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 19:55:52.588 -07 000000482 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:55:52.588 -07 000000482 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:55:52.588 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:55:52.588 -07 000000482 INF: ===================  ===================
17-03-17 19:55:55.138 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.979922,
17-03-17 19:55:56.738 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:55:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:55:59.168 -07 000000478 INF: WaitCommand(10000) end
17-03-17 19:55:59.168 -07 000000610 INF: =================== Cycle #32, Imaging ===================
17-03-17 19:55:59.168 -07 000000610 INF: Imaging Cycle 32: ScanTilesCommand Cycle 32 time start.
17-03-17 19:55:59.168 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:55:59.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:59.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:55:59.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:55:59.198 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:55:59.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:55:59.518 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:55:59.518 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:55:59.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:55:59.588 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:55:59.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:55:59.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:55:59.588 -07 000000593 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:55:59.588 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:55:59.588 -07 000000593 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:55:59.588 -07 000000502 INF: FPGA: Recv EXLED1ON 
17-03-17 19:55:59.598 -07 000000593 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:55:59.598 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:55:59.598 -07 000000501 INF: FPGA: Recv EXLED1ADCR 23131
17-03-17 19:55:59.608 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:55:59.608 -07 000000593 INF: RedLED: Using Red data: Photodiode ADC 23131 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.6 mW
17-03-17 19:55:59.608 -07 000000593 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:55:59.608 -07 000000501 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:55:59.618 -07 000000593 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:55:59.618 -07 000000593 INF: RedLED: LED was on for 19 ms
17-03-17 19:55:59.618 -07 000000593 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 19:55:59.618 -07 000000593 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:55:59.618 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:55:59.618 -07 000000593 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:55:59.618 -07 000000462 INF: FPGA: Recv EXLED2ON 
17-03-17 19:55:59.628 -07 000000593 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:55:59.628 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:55:59.628 -07 000000462 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 19:55:59.638 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:55:59.638 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 19:55:59.638 -07 000000593 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:55:59.638 -07 000000501 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:55:59.648 -07 000000593 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:55:59.648 -07 000000593 INF: GreenLED: LED was on for 19 ms
17-03-17 19:55:59.648 -07 000000593 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:55:59.648 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:55:59.648 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 19:55:59.658 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:55:59.658 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:56:00.158 -07 000000476 INF: FPGA: Recv EMOUT
17-03-17 19:56:00.158 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 504 ms overall
17-03-17 19:56:00.158 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:56:00.158 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 19:56:00.168 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:00.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:00.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127640529640601. ------
17-03-17 19:56:00.168 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:00.168 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17951 mm
17-03-17 19:56:00.168 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:00.168 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:00.168 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:56:00.178 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 19:56:00.178 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39213, sync = True, waitForSettling = False)
17-03-17 19:56:00.178 -07 000000478 INF: Z Motor: Moving to -0.179506 mm, started at -0.127641 mm, distance = -51.87 um
17-03-17 19:56:00.178 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:56:00.188 -07 000000478 INF: FPGA: Xmit ZDACW 39213\n [Z Motor]
17-03-17 19:56:00.188 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:56:00.198 -07 000000478 INF: FPGA: 'ZDACW 39213' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:00.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:00.198 -07 000000547 INF: FPGA: Recv YRDPOS 154380
17-03-17 19:56:00.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:00.208 -07 000000462 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:00.208 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:56:00.208 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:56:00.208 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:00.218 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:00.218 -07 000000547 INF: FPGA: Recv ZDACR 39213
17-03-17 19:56:00.228 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:00.228 -07 000000478 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:56:00.228 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:56:00.408 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:00.408 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 19:56:00.498 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.008536,
17-03-17 19:56:01.738 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:01.908 -07 000000482 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 19:56:01.908 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-17 19:56:01.908 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:56:01.908 -07 000000462 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 19:56:01.908 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 19:56:04.758 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:04.758 -07 000000486 INF: FPGA: Recv YRDPOS 122696
17-03-17 19:56:04.768 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:04.768 -07 000000462 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:04.788 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:04.788 -07 000000462 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 19:56:04.788 -07 000000462 INF: Y Motor: Moved to 59.9102 after 4611 ms
17-03-17 19:56:04.788 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179506 mm (DAC = 39213)
17-03-17 19:56:04.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.788 -07 000000502 INF: FPGA: Recv ZSGSRD 37238
17-03-17 19:56:04.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:56:04.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.798 -07 000000502 INF: FPGA: Recv ZSGSRD 37232
17-03-17 19:56:04.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.808 -07 000000502 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:56:04.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.818 -07 000000502 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:56:04.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.828 -07 000000482 INF: FPGA: Recv ZSGSRD 37233
17-03-17 19:56:04.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.838 -07 000000482 INF: FPGA: Recv ZSGSRD 37232
17-03-17 19:56:04.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.848 -07 000000502 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:56:04.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.858 -07 000000502 INF: FPGA: Recv ZSGSRD 37233
17-03-17 19:56:04.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.868 -07 000000482 INF: FPGA: Recv ZSGSRD 37235
17-03-17 19:56:04.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:04.878 -07 000000482 INF: FPGA: Recv ZSGSRD 37234
17-03-17 19:56:04.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.888 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:04.888 -07 000000502 INF: FPGA: Recv ZPIEZORD 33661
17-03-17 19:56:04.898 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.984 V. Piezo Error = -7.9 V.
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37233 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37232 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37230 (-178.6 uncal um), Max = 37238 (-178.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37233, posNoise = 5, negNoise = 3
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: After move to -0.179506, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: Settle wait time = 4616 ms, measure time = 104 ms (allowed 150 ms), total time = 4720 ms
17-03-17 19:56:04.898 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:04.948 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-17 19:56:04.948 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:04.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:04.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:04.948 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:04.948 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:04.948 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:04.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:04.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:04.948 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:56:04.978 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:56:04.978 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:04.978 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:56:04.978 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:04.998 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:56:04.998 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 19:56:04.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:05.038 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:05.238 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:05.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:05.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:05.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:56:05.278 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:05.278 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:05.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:56:05.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:56:05.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:05.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:05.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:56:05.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:05.478 -07 000000547 INF: Image SNR check: start
17-03-17 19:56:05.488 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:05.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:05.488 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:05.498 -07 000000547 INF: Image SNR check: pass  [peak (Max-Min)=64.37]
17-03-17 19:56:05.498 -07 000000547 INF: Autofocus start
17-03-17 19:56:05.498 -07 000000547 INF: MeasureProfile start
17-03-17 19:56:05.508 -07 000000547 INF: MeasureProfile done
17-03-17 19:56:05.508 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:56:05.508 -07 000000547 INF: Autofocus finished
17-03-17 19:56:05.688 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:05.688 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:05.698 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179516042685321. ----------
17-03-17 19:56:05.698 -07 000000610 INF: Cycle	32	Tile	1	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:05.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37710, sync = True, waitForSettling = True)
17-03-17 19:56:05.698 -07 000000610 INF: Z Motor: Moving to -0.172625 mm, started at -0.179516 mm, distance = 6.89 um
17-03-17 19:56:05.698 -07 000000610 INF: FPGA: Xmit ZDACW 37710\n [Z Motor]
17-03-17 19:56:05.698 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:56:05.708 -07 000000610 INF: FPGA: 'ZDACW 37710' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:05.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:05.708 -07 000000482 INF: FPGA: Recv ZDACR 37710
17-03-17 19:56:05.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:05.858 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.020806,
17-03-17 19:56:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.868 -07 000000476 INF: FPGA: Recv ZSGSRD 36160
17-03-17 19:56:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.878 -07 000000476 INF: FPGA: Recv ZSGSRD 36163
17-03-17 19:56:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.898 -07 000000541 INF: FPGA: Recv ZSGSRD 36157
17-03-17 19:56:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.908 -07 000000482 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:56:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.938 -07 000000541 INF: FPGA: Recv ZSGSRD 36159
17-03-17 19:56:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.948 -07 000000462 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:56:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.958 -07 000000502 INF: FPGA: Recv ZSGSRD 36165
17-03-17 19:56:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:56:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:56:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:05.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36157
17-03-17 19:56:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:05.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:05.998 -07 000000462 INF: FPGA: Recv ZPIEZORD 32229
17-03-17 19:56:06.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:06.008 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 19:56:06.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36161 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36162 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36157 (-171.7 uncal um), Max = 36165 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:56:06.008 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36161, posNoise = 4, negNoise = 4
17-03-17 19:56:06.008 -07 000000610 INF: Z Motor: After move to -0.172625, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:06.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 305 ms)
17-03-17 19:56:06.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:06.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:06.008 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:06.008 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:06.008 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:06.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:06.008 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:06.008 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:06.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:06.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:06.008 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:56:06.008 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:56:06.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:06.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:06.028 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:56:06.028 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:56:06.028 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:56:06.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:06.038 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:56:06.038 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:06.058 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:56:06.058 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-17 19:56:06.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37887 150\n [Camera]
17-03-17 19:56:06.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:06.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:06.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:06.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:06.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:06.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:06.668 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:06.678 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:06.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:56:06.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:06.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:06.738 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:06.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37887 792
17-03-17 19:56:07.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:07.068 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:56:07.078 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:56:07.078 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:07.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:56:07.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:56:07.078 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:07.078 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:07.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:07.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:56:07.088 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:56:07.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:07.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:07.208 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:07.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:07.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:07.208 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:07.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:07.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:56:07.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:07.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:07.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:07.398 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:07.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37887 150' command took 2 ms to send, 1331 ms to get response, and 1339 ms overall
17-03-17 19:56:07.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:07.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172629287269353. ------
17-03-17 19:56:07.398 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:07.398 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17903 mm
17-03-17 19:56:07.398 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:07.398 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 39110, sync = True, waitForSettling = False)
17-03-17 19:56:07.398 -07 000000593 INF: Z Motor: Moving to -0.179034 mm, started at -0.172629 mm, distance = -6.40 um
17-03-17 19:56:07.398 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:56:07.398 -07 000000482 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 19:56:07.408 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:07.408 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:07.408 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:07.408 -07 000000502 INF: FPGA: Recv YRDPOS 122696
17-03-17 19:56:07.418 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:07.418 -07 000000482 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:07.418 -07 000000482 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:07.418 -07 000000482 INF: Y Motor: Moving 1332 steps2
17-03-17 19:56:07.418 -07 000000593 INF: FPGA: Xmit ZDACW 39110\n [Z Motor]
17-03-17 19:56:07.418 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:56:07.428 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:07.428 -07 000000593 INF: FPGA: 'ZDACW 39110' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:56:07.438 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:07.448 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:07.448 -07 000000547 INF: FPGA: Recv ZDACR 39110
17-03-17 19:56:07.458 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:07.458 -07 000000593 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:56:07.628 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:07.628 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 19:56:07.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:56:07.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:56:07.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:07.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:56:07.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:56:07.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:07.738 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:07.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:07.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 19:56:07.748 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 19:56:07.808 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:56:07.808 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:07.838 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:07.838 -07 000000476 INF: FPGA: Recv YRDPOS 124380
17-03-17 19:56:07.848 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:07.848 -07 000000482 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:07.848 -07 000000482 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:56:07.848 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 19:56:08.798 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:08.798 -07 000000551 INF: FPGA: Recv YRDPOS 124380
17-03-17 19:56:08.808 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:08.808 -07 000000482 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:08.828 -07 000000482 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:08.828 -07 000000482 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:08.828 -07 000000482 INF: Y Motor: Moved to 60.7324 after 1423 ms (table move)
17-03-17 19:56:08.828 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179034 mm (DAC = 39110)
17-03-17 19:56:08.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.828 -07 000000547 INF: FPGA: Recv ZSGSRD 37160
17-03-17 19:56:08.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:08.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.838 -07 000000626 INF: FPGA: Recv ZSGSRD 37153
17-03-17 19:56:08.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.848 -07 000000448 INF: FPGA: Recv ZSGSRD 37151
17-03-17 19:56:08.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.858 -07 000000486 INF: FPGA: Recv ZSGSRD 37168
17-03-17 19:56:08.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.868 -07 000000482 INF: FPGA: Recv ZSGSRD 37155
17-03-17 19:56:08.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.878 -07 000000012 INF: FPGA: Recv ZSGSRD 37172
17-03-17 19:56:08.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.888 -07 000000475 INF: FPGA: Recv ZSGSRD 37155
17-03-17 19:56:08.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.898 -07 000000433 INF: FPGA: Recv ZSGSRD 37153
17-03-17 19:56:08.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.908 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.908 -07 000000502 INF: FPGA: Recv ZSGSRD 37158
17-03-17 19:56:08.918 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.918 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:08.918 -07 000000626 INF: FPGA: Recv ZSGSRD 37155
17-03-17 19:56:08.928 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:08.928 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:08.928 -07 000000482 INF: FPGA: Recv ZPIEZORD 33566
17-03-17 19:56:08.938 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.968 V. Piezo Error = -8.0 V.
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37158 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37155 (-178.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 37151 (-178.1 uncal um), Max = 37172 (-178.2 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37158, posNoise = 14, negNoise = 7
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: After move to -0.179034, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: Settle wait time = 1426 ms, measure time = 105 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:56:08.938 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:08.988 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:56:08.988 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:08.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:08.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:08.988 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:08.988 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:08.988 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:08.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:08.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:56:08.988 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:08.998 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:08.998 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:09.008 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:56:09.008 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:56:09.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:09.058 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:09.258 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:09.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:09.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:09.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:56:09.298 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:09.298 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:09.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:56:09.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:56:09.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:09.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:09.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:56:09.398 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:09.398 -07 000000541 INF: Autofocus start
17-03-17 19:56:09.398 -07 000000541 INF: MeasureProfile start
17-03-17 19:56:09.398 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:09.408 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:09.408 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:09.408 -07 000000541 INF: MeasureProfile done
17-03-17 19:56:09.408 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:56:09.408 -07 000000541 INF: Autofocus finished
17-03-17 19:56:09.608 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:09.608 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:56:09.608 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179034226774689. ----------
17-03-17 19:56:09.608 -07 000000610 INF: Cycle	32	Tile	2	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:09.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37624, sync = True, waitForSettling = True)
17-03-17 19:56:09.618 -07 000000610 INF: Z Motor: Moving to -0.172232 mm, started at -0.179034 mm, distance = 6.80 um
17-03-17 19:56:09.618 -07 000000610 INF: FPGA: Xmit ZDACW 37624\n [Z Motor]
17-03-17 19:56:09.618 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:56:09.628 -07 000000610 INF: FPGA: 'ZDACW 37624' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:09.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:09.628 -07 000000448 INF: FPGA: Recv ZDACR 37624
17-03-17 19:56:09.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.788 -07 000000626 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:56:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:56:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.808 -07 000000415 INF: FPGA: Recv ZSGSRD 36096
17-03-17 19:56:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.818 -07 000000551 INF: FPGA: Recv ZSGSRD 36099
17-03-17 19:56:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.828 -07 000000547 INF: FPGA: Recv ZSGSRD 36100
17-03-17 19:56:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.838 -07 000000608 INF: FPGA: Recv ZSGSRD 36100
17-03-17 19:56:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:56:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.858 -07 000000415 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:56:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.868 -07 000000478 INF: FPGA: Recv ZSGSRD 36101
17-03-17 19:56:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:09.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36100
17-03-17 19:56:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:09.888 -07 000000478 INF: FPGA: Recv ZPIEZORD 32158
17-03-17 19:56:09.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:09.898 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.7 V.
17-03-17 19:56:09.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36100 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:56:09.898 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36100, posNoise = 6, negNoise = 4
17-03-17 19:56:09.898 -07 000000610 INF: Z Motor: After move to -0.172232, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:09.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:56:09.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:09.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:09.898 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:09.898 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:09.898 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:09.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:09.898 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:09.898 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:09.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:09.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:09.898 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:09.898 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:09.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:09.908 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:09.908 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:09.908 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:09.918 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:56:09.918 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:56:09.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:56:09.918 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:56:09.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37801 150\n [Camera]
17-03-17 19:56:10.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:10.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:56:10.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:56:10.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:10.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:10.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:10.538 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:56:10.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:56:10.538 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:10.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:10.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:56:10.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37801 792
17-03-17 19:56:10.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:10.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:56:10.928 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:56:10.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:10.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:56:10.928 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:56:10.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:10.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:10.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:56:10.938 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:10.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:56:11.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:11.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:11.068 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:11.068 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:11.068 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:56:11.068 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:11.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:11.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:11.068 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:11.068 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:11.258 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.024884,
17-03-17 19:56:11.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1333
17-03-17 19:56:11.258 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:11.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37801 150' command took 2 ms to send, 1329 ms to get response, and 1340 ms overall
17-03-17 19:56:11.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:11.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.172237410328706. ------
17-03-17 19:56:11.268 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17882 mm
17-03-17 19:56:11.268 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:11.378 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:11.378 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:56:11.378 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 19:56:11.378 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39062, sync = True, waitForSettling = False)
17-03-17 19:56:11.378 -07 000000502 INF: Z Motor: Moving to -0.178814 mm, started at -0.172237 mm, distance = -6.58 um
17-03-17 19:56:11.388 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:11.388 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 116 ms overall
17-03-17 19:56:11.408 -07 000000502 INF: FPGA: Xmit ZDACW 39062\n [Z Motor]
17-03-17 19:56:11.408 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:56:11.418 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:11.418 -07 000000502 INF: FPGA: 'ZDACW 39062' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:56:11.418 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:56:11.428 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:11.428 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-17 19:56:11.428 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:11.428 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:11.428 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-17 19:56:11.438 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:11.438 -07 000000415 INF: FPGA: Recv ZDACR 39062
17-03-17 19:56:11.448 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:11.448 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:11.448 -07 000000502 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 19:56:11.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:56:11.468 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:56:11.468 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:11.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:56:11.468 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:56:11.468 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:11.468 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:11.478 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:56:11.478 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:56:11.478 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:56:11.628 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:11.628 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 242 ms overall
17-03-17 19:56:11.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:11.818 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:56:11.818 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:56:11.858 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:11.858 -07 000000551 INF: FPGA: Recv YRDPOS 126081
17-03-17 19:56:11.868 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:11.868 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:11.868 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:56:11.868 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 19:56:12.818 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:12.818 -07 000000593 INF: FPGA: Recv YRDPOS 126082
17-03-17 19:56:12.828 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:12.828 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:12.848 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:12.848 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:56:12.848 -07 000000501 INF: Y Motor: Moved to 61.5635 after 1463 ms (table move)
17-03-17 19:56:12.848 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178814 mm (DAC = 39062)
17-03-17 19:56:12.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.848 -07 000000486 INF: FPGA: Recv ZSGSRD 37123
17-03-17 19:56:12.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:12.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.858 -07 000000476 INF: FPGA: Recv ZSGSRD 37121
17-03-17 19:56:12.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.868 -07 000000431 INF: FPGA: Recv ZSGSRD 37118
17-03-17 19:56:12.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.878 -07 000000593 INF: FPGA: Recv ZSGSRD 37124
17-03-17 19:56:12.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.888 -07 000000475 INF: FPGA: Recv ZSGSRD 37128
17-03-17 19:56:12.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.898 -07 000000012 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:56:12.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.908 -07 000000478 INF: FPGA: Recv ZSGSRD 37132
17-03-17 19:56:12.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.918 -07 000000482 INF: FPGA: Recv ZSGSRD 37117
17-03-17 19:56:12.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.928 -07 000000433 INF: FPGA: Recv ZSGSRD 37125
17-03-17 19:56:12.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.938 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:12.938 -07 000000502 INF: FPGA: Recv ZSGSRD 37121
17-03-17 19:56:12.948 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.948 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:12.948 -07 000000012 INF: FPGA: Recv ZPIEZORD 33535
17-03-17 19:56:12.958 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.960 V. Piezo Error = -8.0 V.
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37124 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37124 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37117 (-177.9 uncal um), Max = 37132 (-178.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37124, posNoise = 8, negNoise = 7
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: After move to -0.178814, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms
17-03-17 19:56:12.958 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:13.008 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-17 19:56:13.008 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:13.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:13.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:13.008 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:13.008 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:13.008 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:13.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:13.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:13.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:13.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:13.018 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:13.028 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:56:13.028 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:56:13.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:13.078 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:13.278 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:13.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:13.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:13.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:13.318 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:13.318 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:13.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:56:13.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:56:13.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:13.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:13.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:56:13.418 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:13.418 -07 000000431 INF: Autofocus start
17-03-17 19:56:13.418 -07 000000431 INF: MeasureProfile start
17-03-17 19:56:13.418 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:13.428 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:13.428 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:13.428 -07 000000431 INF: MeasureProfile done
17-03-17 19:56:13.428 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:56:13.428 -07 000000431 INF: Autofocus finished
17-03-17 19:56:13.628 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:13.628 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:56:13.628 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178815803561869. ----------
17-03-17 19:56:13.638 -07 000000610 INF: Cycle	32	Tile	3	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:13.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37595, sync = True, waitForSettling = True)
17-03-17 19:56:13.638 -07 000000610 INF: Z Motor: Moving to -0.172099 mm, started at -0.178816 mm, distance = 6.72 um
17-03-17 19:56:13.638 -07 000000610 INF: FPGA: Xmit ZDACW 37595\n [Z Motor]
17-03-17 19:56:13.638 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:56:13.648 -07 000000610 INF: FPGA: 'ZDACW 37595' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:13.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:13.648 -07 000000459 INF: FPGA: Recv ZDACR 37595
17-03-17 19:56:13.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:13.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.808 -07 000000480 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:56:13.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.818 -07 000000012 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:56:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.828 -07 000000475 INF: FPGA: Recv ZSGSRD 36077
17-03-17 19:56:13.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.838 -07 000000551 INF: FPGA: Recv ZSGSRD 36080
17-03-17 19:56:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.848 -07 000000459 INF: FPGA: Recv ZSGSRD 36076
17-03-17 19:56:13.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.858 -07 000000486 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:56:13.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.868 -07 000000480 INF: FPGA: Recv ZSGSRD 36082
17-03-17 19:56:13.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36080
17-03-17 19:56:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.888 -07 000000486 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:56:13.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:13.898 -07 000000501 INF: FPGA: Recv ZSGSRD 36074
17-03-17 19:56:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:13.908 -07 000000541 INF: FPGA: Recv ZPIEZORD 32161
17-03-17 19:56:13.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:13.918 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 19:56:13.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36079 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36079 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36074 (-171.2 uncal um), Max = 36083 (-171.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:56:13.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36079, posNoise = 4, negNoise = 5
17-03-17 19:56:13.918 -07 000000610 INF: Z Motor: After move to -0.172099, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:13.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:56:13.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:13.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:13.918 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:13.918 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:13.918 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:13.918 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:13.918 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:13.918 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:13.918 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:13.918 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:13.918 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:13.918 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:13.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:13.928 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:13.928 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:13.928 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:13.928 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:56:13.928 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:13.938 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:56:13.938 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:56:13.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37772 150\n [Camera]
17-03-17 19:56:14.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:14.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:14.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:14.548 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:14.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:14.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:14.548 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:14.558 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:14.558 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:14.558 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:14.558 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:56:14.738 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37772 792
17-03-17 19:56:14.888 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:14.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:56:14.928 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:56:14.928 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:14.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:56:14.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:56:14.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:14.928 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:14.938 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:56:14.938 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:14.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:56:15.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:15.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:15.078 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:15.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:15.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:15.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:15.088 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:15.088 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:56:15.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:15.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:15.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:15.278 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:15.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37772 150' command took 2 ms to send, 1330 ms to get response, and 1337 ms overall
17-03-17 19:56:15.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:15.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.172102501873729. ------
17-03-17 19:56:15.278 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:15.278 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17811 mm
17-03-17 19:56:15.278 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:15.288 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:15.288 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:15.288 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:15.288 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:56:15.288 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 19:56:15.288 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38908, sync = True, waitForSettling = False)
17-03-17 19:56:15.288 -07 000000462 INF: Z Motor: Moving to -0.178109 mm, started at -0.172103 mm, distance = -6.01 um
17-03-17 19:56:15.298 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:15.298 -07 000000502 INF: FPGA: Recv YRDPOS 126082
17-03-17 19:56:15.308 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:15.308 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:15.308 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:15.308 -07 000000012 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:56:15.308 -07 000000462 INF: FPGA: Xmit ZDACW 38908\n [Z Motor]
17-03-17 19:56:15.308 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:56:15.318 -07 000000462 INF: FPGA: 'ZDACW 38908' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:56:15.318 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:15.328 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:15.328 -07 000000593 INF: FPGA: Recv ZDACR 38908
17-03-17 19:56:15.338 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:15.338 -07 000000462 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:56:15.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:56:15.478 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:56:15.478 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:15.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:56:15.478 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:56:15.478 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:15.478 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:15.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:56:15.478 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:15.488 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:15.488 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:15.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:56:15.688 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:56:15.688 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:56:15.728 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:15.728 -07 000000482 INF: FPGA: Recv YRDPOS 127784
17-03-17 19:56:15.738 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:15.738 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:15.738 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:56:15.738 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 19:56:16.688 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:16.688 -07 000000541 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:56:16.698 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:16.698 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:16.718 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:16.718 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:56:16.718 -07 000000012 INF: Y Motor: Moved to 62.3950 after 1431 ms (table move)
17-03-17 19:56:16.718 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178109 mm (DAC = 38908)
17-03-17 19:56:16.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.728 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.996267,
17-03-17 19:56:16.728 -07 000000478 INF: FPGA: Recv ZSGSRD 37014
17-03-17 19:56:16.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:56:16.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.738 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:16.738 -07 000000551 INF: FPGA: Recv ZSGSRD 37024
17-03-17 19:56:16.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.758 -07 000000433 INF: FPGA: Recv ZSGSRD 37013
17-03-17 19:56:16.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:16.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.768 -07 000000502 INF: FPGA: Recv ZSGSRD 37012
17-03-17 19:56:16.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.788 -07 000000012 INF: FPGA: Recv ZSGSRD 37016
17-03-17 19:56:16.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:16.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.798 -07 000000431 INF: FPGA: Recv ZSGSRD 37017
17-03-17 19:56:16.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.828 -07 000000476 INF: FPGA: Recv ZSGSRD 37024
17-03-17 19:56:16.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:16.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.838 -07 000000486 INF: FPGA: Recv ZSGSRD 37015
17-03-17 19:56:16.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.848 -07 000000012 INF: FPGA: Recv ZSGSRD 37011
17-03-17 19:56:16.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:16.858 -07 000000448 INF: FPGA: Recv ZSGSRD 37012
17-03-17 19:56:16.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.868 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:16.868 -07 000000480 INF: FPGA: Recv ZPIEZORD 33426
17-03-17 19:56:16.878 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -8.0 V.
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37016 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37014 (-177.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37011 (-177.2 uncal um), Max = 37024 (-177.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37016, posNoise = 8, negNoise = 5
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: After move to -0.178109, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 153 ms (allowed 150 ms), total time = 1588 ms
17-03-17 19:56:16.878 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 19:56:16.878 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:56:16.878 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:16.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:16.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:16.878 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:16.878 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:16.878 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:16.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:16.888 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:16.888 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:16.888 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:16.888 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:16.898 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:56:16.898 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:56:16.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:16.938 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:17.138 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:17.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:17.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:17.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:56:17.178 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:17.178 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:17.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:56:17.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:56:17.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:17.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:56:17.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:56:17.378 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:17.378 -07 000000459 INF: Autofocus start
17-03-17 19:56:17.378 -07 000000459 INF: MeasureProfile start
17-03-17 19:56:17.378 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:17.388 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:17.388 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:17.388 -07 000000459 INF: MeasureProfile done
17-03-17 19:56:17.388 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:56:17.388 -07 000000459 INF: Autofocus finished
17-03-17 19:56:17.588 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:17.588 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:17.588 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178121988650559. ----------
17-03-17 19:56:17.588 -07 000000610 INF: Cycle	32	Tile	4	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:17.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37405, sync = True, waitForSettling = True)
17-03-17 19:56:17.598 -07 000000610 INF: Z Motor: Moving to -0.171229 mm, started at -0.178122 mm, distance = 6.89 um
17-03-17 19:56:17.598 -07 000000610 INF: FPGA: Xmit ZDACW 37405\n [Z Motor]
17-03-17 19:56:17.598 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 19:56:17.608 -07 000000610 INF: FPGA: 'ZDACW 37405' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:17.608 -07 000000502 INF: FPGA: Recv ZDACR 37405
17-03-17 19:56:17.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:17.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.768 -07 000000486 INF: FPGA: Recv ZSGSRD 35946
17-03-17 19:56:17.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:17.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.778 -07 000000475 INF: FPGA: Recv ZSGSRD 35949
17-03-17 19:56:17.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.788 -07 000000433 INF: FPGA: Recv ZSGSRD 35952
17-03-17 19:56:17.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35946
17-03-17 19:56:17.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.808 -07 000000626 INF: FPGA: Recv ZSGSRD 35940
17-03-17 19:56:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.818 -07 000000475 INF: FPGA: Recv ZSGSRD 35948
17-03-17 19:56:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.828 -07 000000502 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:56:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35948
17-03-17 19:56:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.848 -07 000000462 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:56:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:17.858 -07 000000431 INF: FPGA: Recv ZSGSRD 35936
17-03-17 19:56:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:17.868 -07 000000541 INF: FPGA: Recv ZPIEZORD 31996
17-03-17 19:56:17.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:17.878 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.7 V.
17-03-17 19:56:17.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35945 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35946 (-170.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35936 (-170.3 uncal um), Max = 35952 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:56:17.878 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35945, posNoise = 7, negNoise = 9
17-03-17 19:56:17.878 -07 000000610 INF: Z Motor: After move to -0.171229, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:17.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:56:17.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:17.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:17.878 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:17.878 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:17.878 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:17.878 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:17.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:17.878 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:17.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:17.878 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:17.878 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:56:17.878 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:17.888 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:17.888 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:17.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:17.888 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:17.898 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:56:17.898 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:56:17.898 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:56:17.898 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:56:17.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37582 150\n [Camera]
17-03-17 19:56:18.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:18.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:18.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:18.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:18.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:18.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:56:18.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:18.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:18.518 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:18.518 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:18.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:56:18.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37582 792
17-03-17 19:56:18.858 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:18.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:56:18.908 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:56:18.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:18.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:56:18.908 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:56:18.908 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:18.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:18.908 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:56:18.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:18.918 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:56:19.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:19.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:19.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:19.048 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:19.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:56:19.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:19.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:19.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:19.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:19.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:56:19.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:19.238 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:19.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37582 150' command took 2 ms to send, 1329 ms to get response, and 1337 ms overall
17-03-17 19:56:19.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:19.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171241657446733. ------
17-03-17 19:56:19.368 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:19.368 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17757 mm
17-03-17 19:56:19.368 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:19.368 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:19.368 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:56:19.368 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 19:56:19.368 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38790, sync = True, waitForSettling = False)
17-03-17 19:56:19.368 -07 000000478 INF: Z Motor: Moving to -0.177569 mm, started at -0.171242 mm, distance = -6.33 um
17-03-17 19:56:19.378 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:19.378 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:19.378 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:56:19.388 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:56:19.388 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:19.388 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:19.388 -07 000000502 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:56:19.388 -07 000000478 INF: FPGA: Xmit ZDACW 38790\n [Z Motor]
17-03-17 19:56:19.388 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:56:19.398 -07 000000478 INF: FPGA: 'ZDACW 38790' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:56:19.398 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:19.408 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:19.418 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:19.418 -07 000000608 INF: FPGA: Recv ZDACR 38790
17-03-17 19:56:19.428 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:56:19.428 -07 000000478 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:56:19.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:56:19.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:56:19.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:19.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:19.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:56:19.448 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:56:19.448 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:19.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:56:19.458 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:56:19.458 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:56:19.598 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:19.598 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:56:19.778 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:56:19.778 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:19.818 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:19.818 -07 000000448 INF: FPGA: Recv YRDPOS 129482
17-03-17 19:56:19.828 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:19.828 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:19.828 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:56:19.828 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:56:20.778 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:20.778 -07 000000551 INF: FPGA: Recv YRDPOS 129482
17-03-17 19:56:20.788 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.788 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:20.808 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:20.808 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:20.808 -07 000000502 INF: Y Motor: Moved to 63.2236 after 1437 ms (table move)
17-03-17 19:56:20.808 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177569 mm (DAC = 38790)
17-03-17 19:56:20.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.808 -07 000000593 INF: FPGA: Recv ZSGSRD 36930
17-03-17 19:56:20.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:20.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.818 -07 000000459 INF: FPGA: Recv ZSGSRD 36927
17-03-17 19:56:20.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36933
17-03-17 19:56:20.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.838 -07 000000551 INF: FPGA: Recv ZSGSRD 36932
17-03-17 19:56:20.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.848 -07 000000476 INF: FPGA: Recv ZSGSRD 36933
17-03-17 19:56:20.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36936
17-03-17 19:56:20.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.868 -07 000000448 INF: FPGA: Recv ZSGSRD 36935
17-03-17 19:56:20.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.878 -07 000000415 INF: FPGA: Recv ZSGSRD 36930
17-03-17 19:56:20.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.888 -07 000000433 INF: FPGA: Recv ZSGSRD 36925
17-03-17 19:56:20.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:20.898 -07 000000608 INF: FPGA: Recv ZSGSRD 36928
17-03-17 19:56:20.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.908 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:20.908 -07 000000482 INF: FPGA: Recv ZPIEZORD 33337
17-03-17 19:56:20.918 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.0 V.
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36931 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36931 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36925 (-176.6 uncal um), Max = 36936 (-176.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36931, posNoise = 5, negNoise = 6
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: After move to -0.177569, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:56:20.918 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:20.968 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:56:20.968 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:20.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:20.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:20.968 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:20.968 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:20.968 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:20.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:20.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:56:20.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:20.978 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:20.978 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:20.978 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:56:20.978 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:56:20.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:21.028 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 19:56:21.228 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 19:56:21.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 19:56:21.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:21.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:21.268 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:21.268 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:21.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:56:21.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:56:21.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:21.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:56:21.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:56:21.368 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:21.368 -07 000000501 INF: Autofocus start
17-03-17 19:56:21.368 -07 000000501 INF: MeasureProfile start
17-03-17 19:56:21.378 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:21.378 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:21.378 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:21.388 -07 000000501 INF: MeasureProfile done
17-03-17 19:56:21.388 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:56:21.388 -07 000000501 INF: Autofocus finished
17-03-17 19:56:21.578 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:21.578 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:56:21.578 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177575930618509. ----------
17-03-17 19:56:21.588 -07 000000610 INF: Cycle	32	Tile	5	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:21.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37323, sync = True, waitForSettling = True)
17-03-17 19:56:21.588 -07 000000610 INF: Z Motor: Moving to -0.170854 mm, started at -0.177576 mm, distance = 6.72 um
17-03-17 19:56:21.588 -07 000000610 INF: FPGA: Xmit ZDACW 37323\n [Z Motor]
17-03-17 19:56:21.588 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:56:21.598 -07 000000610 INF: FPGA: 'ZDACW 37323' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:21.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:21.598 -07 000000626 INF: FPGA: Recv ZDACR 37323
17-03-17 19:56:21.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:21.738 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:21.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.758 -07 000000547 INF: FPGA: Recv ZSGSRD 35891
17-03-17 19:56:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:21.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35881
17-03-17 19:56:21.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.778 -07 000000502 INF: FPGA: Recv ZSGSRD 35890
17-03-17 19:56:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.788 -07 000000501 INF: FPGA: Recv ZSGSRD 35891
17-03-17 19:56:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35890
17-03-17 19:56:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35888
17-03-17 19:56:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.818 -07 000000482 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:56:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.838 -07 000000502 INF: FPGA: Recv ZSGSRD 35892
17-03-17 19:56:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.848 -07 000000541 INF: FPGA: Recv ZSGSRD 35882
17-03-17 19:56:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:21.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35886
17-03-17 19:56:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:21.868 -07 000000501 INF: FPGA: Recv ZPIEZORD 31952
17-03-17 19:56:21.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:21.878 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -8.7 V.
17-03-17 19:56:21.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35888 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35889 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35881 (-170.0 uncal um), Max = 35892 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:56:21.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35888, posNoise = 4, negNoise = 7
17-03-17 19:56:21.878 -07 000000610 INF: Z Motor: After move to -0.170854, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:21.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 19:56:21.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:21.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:21.878 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:21.878 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:21.878 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:21.878 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:21.878 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:21.878 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:56:21.878 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:21.878 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:21.878 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:21.878 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:21.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:56:21.888 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:21.888 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:21.888 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:21.898 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:56:21.898 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:21.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:56:21.898 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:56:21.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37499 150\n [Camera]
17-03-17 19:56:22.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:22.148 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.005817,
17-03-17 19:56:22.508 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:22.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:22.508 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:22.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:22.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:22.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:22.518 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:22.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:22.518 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:22.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:22.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37499 792
17-03-17 19:56:22.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:22.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:56:22.908 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:56:22.908 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:22.918 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:22.918 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:56:22.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:56:22.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:56:22.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:22.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:22.928 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:56:23.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:23.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:23.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:23.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:23.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:23.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:23.058 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:23.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:56:23.058 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:23.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:56:23.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:56:23.238 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:23.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37499 150' command took 6 ms to send, 1327 ms to get response, and 1338 ms overall
17-03-17 19:56:23.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:23.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170875477354652. ------
17-03-17 19:56:23.358 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17729 mm
17-03-17 19:56:23.358 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:23.358 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:23.358 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:56:23.358 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 19:56:23.358 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38729, sync = True, waitForSettling = False)
17-03-17 19:56:23.358 -07 000000480 INF: Z Motor: Moving to -0.177290 mm, started at -0.170875 mm, distance = -6.41 um
17-03-17 19:56:23.368 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:23.368 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:23.368 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:56:23.368 -07 000000012 INF: FPGA: Recv YRDPOS 129482
17-03-17 19:56:23.378 -07 000000480 INF: FPGA: Xmit ZDACW 38729\n [Z Motor]
17-03-17 19:56:23.378 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:56:23.378 -07 000000448 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:23.378 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:23.378 -07 000000448 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:56:23.378 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:56:23.388 -07 000000480 INF: FPGA: 'ZDACW 38729' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:56:23.388 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:23.398 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:23.408 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:23.408 -07 000000547 INF: FPGA: Recv ZDACR 38729
17-03-17 19:56:23.418 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:23.418 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:56:23.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:56:23.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:56:23.458 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:23.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:56:23.458 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:56:23.458 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:23.458 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:23.458 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:56:23.458 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:23.468 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:56:23.588 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:23.588 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 19:56:23.768 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:56:23.768 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:23.808 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:23.808 -07 000000547 INF: FPGA: Recv YRDPOS 131187
17-03-17 19:56:23.818 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:23.818 -07 000000448 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:23.818 -07 000000448 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 19:56:23.818 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:56:24.768 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:24.768 -07 000000431 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:56:24.778 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:24.778 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:24.798 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:24.798 -07 000000448 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:56:24.798 -07 000000448 INF: Y Motor: Moved to 64.0566 after 1434 ms (table move)
17-03-17 19:56:24.798 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177290 mm (DAC = 38729)
17-03-17 19:56:24.798 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.798 -07 000000547 INF: FPGA: Recv ZSGSRD 36885
17-03-17 19:56:24.808 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:24.808 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.808 -07 000000448 INF: FPGA: Recv ZSGSRD 36887
17-03-17 19:56:24.818 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.818 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.818 -07 000000608 INF: FPGA: Recv ZSGSRD 36894
17-03-17 19:56:24.828 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.828 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36888
17-03-17 19:56:24.838 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.838 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.838 -07 000000551 INF: FPGA: Recv ZSGSRD 36884
17-03-17 19:56:24.848 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.848 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.848 -07 000000482 INF: FPGA: Recv ZSGSRD 36891
17-03-17 19:56:24.858 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.858 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.858 -07 000000415 INF: FPGA: Recv ZSGSRD 36884
17-03-17 19:56:24.868 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.868 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.868 -07 000000480 INF: FPGA: Recv ZSGSRD 36888
17-03-17 19:56:24.878 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.878 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.878 -07 000000541 INF: FPGA: Recv ZSGSRD 36887
17-03-17 19:56:24.888 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.888 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:24.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36883
17-03-17 19:56:24.898 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.898 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:24.898 -07 000000459 INF: FPGA: Recv ZPIEZORD 33287
17-03-17 19:56:24.908 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.0 V.
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36887 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36887 (-176.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36883 (-176.4 uncal um), Max = 36894 (-176.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36887, posNoise = 7, negNoise = 4
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: After move to -0.177290, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:56:24.908 -07 000000486 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:24.958 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:56:24.958 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:24.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:24.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:24.958 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:24.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:24.958 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:24.958 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:24.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:24.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:24.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:24.968 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:24.968 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:56:24.968 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:56:24.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:25.018 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:25.218 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:25.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:25.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:25.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:25.258 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:25.258 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:25.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:56:25.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:56:25.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:25.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:25.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:56:25.358 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:25.358 -07 000000433 INF: Autofocus start
17-03-17 19:56:25.358 -07 000000433 INF: MeasureProfile start
17-03-17 19:56:25.368 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:25.368 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 2 ms to get response, and 8 ms overall
17-03-17 19:56:25.368 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:25.368 -07 000000433 INF: MeasureProfile done
17-03-17 19:56:25.368 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:56:25.368 -07 000000433 INF: Autofocus finished
17-03-17 19:56:25.568 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:25.568 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:56:25.568 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177293265284271. ----------
17-03-17 19:56:25.578 -07 000000610 INF: Cycle	32	Tile	6	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:25.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37244, sync = True, waitForSettling = True)
17-03-17 19:56:25.578 -07 000000610 INF: Z Motor: Moving to -0.170492 mm, started at -0.177293 mm, distance = 6.80 um
17-03-17 19:56:25.578 -07 000000610 INF: FPGA: Xmit ZDACW 37244\n [Z Motor]
17-03-17 19:56:25.578 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 19:56:25.588 -07 000000610 INF: FPGA: 'ZDACW 37244' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:25.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:25.588 -07 000000551 INF: FPGA: Recv ZDACR 37244
17-03-17 19:56:25.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:25.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35830
17-03-17 19:56:25.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:25.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:56:25.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:56:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.778 -07 000000431 INF: FPGA: Recv ZSGSRD 35822
17-03-17 19:56:25.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.788 -07 000000478 INF: FPGA: Recv ZSGSRD 35834
17-03-17 19:56:25.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35838
17-03-17 19:56:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.808 -07 000000547 INF: FPGA: Recv ZSGSRD 35833
17-03-17 19:56:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.818 -07 000000475 INF: FPGA: Recv ZSGSRD 35822
17-03-17 19:56:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.828 -07 000000433 INF: FPGA: Recv ZSGSRD 35829
17-03-17 19:56:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:25.838 -07 000000480 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:56:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:25.848 -07 000000482 INF: FPGA: Recv ZPIEZORD 31837
17-03-17 19:56:25.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:25.858 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -8.8 V.
17-03-17 19:56:25.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35830 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35838 (-169.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:56:25.858 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35830, posNoise = 8, negNoise = 8
17-03-17 19:56:25.858 -07 000000610 INF: Z Motor: After move to -0.170492, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:25.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:56:25.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:25.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:25.858 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:25.858 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:25.858 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:25.858 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:25.858 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:25.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:25.858 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:25.858 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:25.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:25.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:25.868 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:25.868 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:25.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:25.868 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:25.878 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:56:25.878 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:56:25.878 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:56:25.878 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:56:25.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37421 150\n [Camera]
17-03-17 19:56:26.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:26.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:26.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:26.488 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:26.488 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:26.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:26.498 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:26.498 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:26.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:26.498 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:26.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:26.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37421 792
17-03-17 19:56:26.738 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:26.838 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 19:56:26.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 19:56:26.868 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:56:26.868 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:26.868 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:26.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:56:26.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:56:26.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:26.878 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:56:26.878 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:26.878 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:56:27.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:27.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:27.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:27.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:27.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:27.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:27.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:27.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:27.038 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:27.038 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:56:27.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:56:27.218 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:27.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37421 150' command took 2 ms to send, 1327 ms to get response, and 1337 ms overall
17-03-17 19:56:27.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:27.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.17050287305043. ------
17-03-17 19:56:27.228 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:27.228 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17702 mm
17-03-17 19:56:27.228 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:27.228 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:27.228 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:56:27.228 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 19:56:27.228 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38669, sync = True, waitForSettling = False)
17-03-17 19:56:27.228 -07 000000415 INF: Z Motor: Moving to -0.177015 mm, started at -0.170503 mm, distance = -6.51 um
17-03-17 19:56:27.238 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:27.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:27.238 -07 000000593 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:56:27.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:56:27.248 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:27.248 -07 000000480 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:27.248 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:27.248 -07 000000480 INF: Y Motor: Moving 1338 steps-13
17-03-17 19:56:27.258 -07 000000415 INF: FPGA: Xmit ZDACW 38669\n [Z Motor]
17-03-17 19:56:27.258 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:56:27.268 -07 000000415 INF: FPGA: 'ZDACW 38669' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:56:27.268 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:27.278 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:27.278 -07 000000012 INF: FPGA: Recv ZDACR 38669
17-03-17 19:56:27.288 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:27.288 -07 000000415 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:56:27.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:56:27.438 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:56:27.438 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:27.438 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:56:27.438 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:56:27.438 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:27.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:27.438 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:56:27.438 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:27.448 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:56:27.448 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:27.448 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:56:27.508 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.990831,
17-03-17 19:56:27.638 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:56:27.638 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:27.678 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:27.678 -07 000000482 INF: FPGA: Recv YRDPOS 132871
17-03-17 19:56:27.688 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:27.688 -07 000000480 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:27.688 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:56:27.688 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 19:56:28.638 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:28.638 -07 000000476 INF: FPGA: Recv YRDPOS 132871
17-03-17 19:56:28.648 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:28.648 -07 000000480 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:28.668 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:28.668 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:28.668 -07 000000480 INF: Y Motor: Moved to 64.8784 after 1434 ms (table move)
17-03-17 19:56:28.668 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177015 mm (DAC = 38669)
17-03-17 19:56:28.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.668 -07 000000482 INF: FPGA: Recv ZSGSRD 36846
17-03-17 19:56:28.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:28.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.678 -07 000000478 INF: FPGA: Recv ZSGSRD 36847
17-03-17 19:56:28.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.688 -07 000000415 INF: FPGA: Recv ZSGSRD 36845
17-03-17 19:56:28.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.698 -07 000000462 INF: FPGA: Recv ZSGSRD 36856
17-03-17 19:56:28.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36852
17-03-17 19:56:28.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.718 -07 000000476 INF: FPGA: Recv ZSGSRD 36845
17-03-17 19:56:28.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.728 -07 000000547 INF: FPGA: Recv ZSGSRD 36843
17-03-17 19:56:28.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.738 -07 000000476 INF: FPGA: Recv ZSGSRD 36844
17-03-17 19:56:28.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.748 -07 000000547 INF: FPGA: Recv ZSGSRD 36846
17-03-17 19:56:28.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:28.758 -07 000000480 INF: FPGA: Recv ZSGSRD 36840
17-03-17 19:56:28.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.768 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:28.768 -07 000000626 INF: FPGA: Recv ZPIEZORD 33242
17-03-17 19:56:28.778 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -8.0 V.
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36846 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36846 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36840 (-176.1 uncal um), Max = 36856 (-176.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36846, posNoise = 10, negNoise = 6
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: After move to -0.177015, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:56:28.778 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:28.828 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:56:28.828 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:28.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:28.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:28.828 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:28.828 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:28.828 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:28.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:28.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:28.828 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:28.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:28.838 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:28.838 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:56:28.838 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:56:28.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:28.888 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:29.088 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:29.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:29.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:29.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:56:29.128 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:29.128 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:29.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:56:29.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:56:29.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:29.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:29.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:56:29.228 -07 000000012 INF: Autofocus start
17-03-17 19:56:29.228 -07 000000012 INF: MeasureProfile start
17-03-17 19:56:29.228 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:29.228 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:29.238 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:29.238 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:29.238 -07 000000012 INF: MeasureProfile done
17-03-17 19:56:29.248 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:56:29.248 -07 000000012 INF: Autofocus finished
17-03-17 19:56:29.438 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:29.438 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:29.438 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177029872586459. ----------
17-03-17 19:56:29.438 -07 000000610 INF: Cycle	32	Tile	7	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:29.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37184, sync = True, waitForSettling = True)
17-03-17 19:56:29.448 -07 000000610 INF: Z Motor: Moving to -0.170217 mm, started at -0.177030 mm, distance = 6.81 um
17-03-17 19:56:29.448 -07 000000610 INF: FPGA: Xmit ZDACW 37184\n [Z Motor]
17-03-17 19:56:29.448 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:56:29.458 -07 000000610 INF: FPGA: 'ZDACW 37184' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:29.458 -07 000000462 INF: FPGA: Recv ZDACR 37184
17-03-17 19:56:29.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.618 -07 000000551 INF: FPGA: Recv ZSGSRD 35790
17-03-17 19:56:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35793
17-03-17 19:56:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.638 -07 000000433 INF: FPGA: Recv ZSGSRD 35791
17-03-17 19:56:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.648 -07 000000480 INF: FPGA: Recv ZSGSRD 35785
17-03-17 19:56:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.658 -07 000000541 INF: FPGA: Recv ZSGSRD 35789
17-03-17 19:56:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35787
17-03-17 19:56:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.678 -07 000000501 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:56:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.688 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:56:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.698 -07 000000012 INF: FPGA: Recv ZSGSRD 35787
17-03-17 19:56:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:29.708 -07 000000541 INF: FPGA: Recv ZSGSRD 35791
17-03-17 19:56:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:29.718 -07 000000486 INF: FPGA: Recv ZPIEZORD 31795
17-03-17 19:56:29.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:29.728 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -8.8 V.
17-03-17 19:56:29.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35789 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35785 (-169.3 uncal um), Max = 35793 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:56:29.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35789, posNoise = 4, negNoise = 4
17-03-17 19:56:29.728 -07 000000610 INF: Z Motor: After move to -0.170217, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:29.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:56:29.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:29.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:29.728 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:29.728 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:29.728 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:29.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:29.728 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:29.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:29.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:56:29.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:29.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:29.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:29.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:29.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:29.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:29.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:29.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:56:29.748 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:56:29.748 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:56:29.748 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:56:29.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37361 150\n [Camera]
17-03-17 19:56:29.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:30.358 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:30.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:30.358 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:30.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:30.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:56:30.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:30.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:30.358 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:30.358 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:30.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:56:30.548 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37361 792
17-03-17 19:56:30.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:30.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:56:30.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:56:30.748 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:30.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:56:30.748 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:56:30.748 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:30.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:30.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:56:30.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:30.758 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:56:30.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:30.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:30.898 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:30.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:30.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:56:30.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:30.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:30.898 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:30.898 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:30.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:56:31.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:31.088 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:31.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37361 150' command took 2 ms to send, 1333 ms to get response, and 1337 ms overall
17-03-17 19:56:31.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:31.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170239480352618. ------
17-03-17 19:56:31.208 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:31.208 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17672 mm
17-03-17 19:56:31.208 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:31.208 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:31.208 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:56:31.208 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 19:56:31.208 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38605, sync = True, waitForSettling = False)
17-03-17 19:56:31.208 -07 000000415 INF: Z Motor: Moving to -0.176722 mm, started at -0.170239 mm, distance = -6.48 um
17-03-17 19:56:31.218 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:31.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:31.218 -07 000000459 INF: FPGA: Recv YRDPOS 132871
17-03-17 19:56:31.228 -07 000000415 INF: FPGA: Xmit ZDACW 38605\n [Z Motor]
17-03-17 19:56:31.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:56:31.228 -07 000000462 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:31.228 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:31.228 -07 000000462 INF: Y Motor: Moving 1351 steps-29
17-03-17 19:56:31.228 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:56:31.238 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:31.238 -07 000000415 INF: FPGA: 'ZDACW 38605' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:56:31.248 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:31.258 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:31.258 -07 000000547 INF: FPGA: Recv ZDACR 38605
17-03-17 19:56:31.268 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:31.268 -07 000000415 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:56:31.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:56:31.288 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:56:31.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:31.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:56:31.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:56:31.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:31.288 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:31.298 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:56:31.298 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:56:31.298 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:56:31.438 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:31.438 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:31.618 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:56:31.618 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:31.658 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:31.658 -07 000000482 INF: FPGA: Recv YRDPOS 134581
17-03-17 19:56:31.668 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:31.668 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:31.668 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:56:31.668 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 19:56:31.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:32.618 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:32.618 -07 000000431 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:56:32.628 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:32.628 -07 000000462 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:32.648 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:32.648 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:56:32.648 -07 000000462 INF: Y Motor: Moved to 65.7139 after 1441 ms (table move)
17-03-17 19:56:32.648 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176722 mm (DAC = 38605)
17-03-17 19:56:32.648 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.658 -07 000000415 INF: FPGA: Recv ZSGSRD 36807
17-03-17 19:56:32.658 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:56:32.658 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.658 -07 000000012 INF: FPGA: Recv ZSGSRD 36800
17-03-17 19:56:32.668 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:32.668 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.668 -07 000000476 INF: FPGA: Recv ZSGSRD 36794
17-03-17 19:56:32.678 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.678 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:56:32.688 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.688 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.688 -07 000000541 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:56:32.698 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.698 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36798
17-03-17 19:56:32.708 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.708 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.708 -07 000000502 INF: FPGA: Recv ZSGSRD 36799
17-03-17 19:56:32.718 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.718 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.718 -07 000000476 INF: FPGA: Recv ZSGSRD 36794
17-03-17 19:56:32.728 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.728 -07 000000547 INF: FPGA: Recv ZSGSRD 36796
17-03-17 19:56:32.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:32.738 -07 000000593 INF: FPGA: Recv ZSGSRD 36799
17-03-17 19:56:32.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.748 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:32.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 33176
17-03-17 19:56:32.758 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.0 V.
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36800 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36799 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36794 (-175.8 uncal um), Max = 36807 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36800, posNoise = 7, negNoise = 6
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: After move to -0.176722, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:56:32.758 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:32.808 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:56:32.808 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:32.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:32.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:32.808 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:32.808 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:32.808 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:32.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:32.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:32.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:32.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:32.818 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:32.828 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:56:32.828 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:56:32.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:32.868 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.979922,
17-03-17 19:56:32.878 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:33.078 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:33.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:33.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:33.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:33.118 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:33.118 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:33.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 19:56:33.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:56:33.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:33.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:33.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:56:33.218 -07 000000433 INF: Autofocus start
17-03-17 19:56:33.218 -07 000000433 INF: MeasureProfile start
17-03-17 19:56:33.218 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:33.218 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:33.228 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:33.228 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:33.228 -07 000000433 INF: MeasureProfile done
17-03-17 19:56:33.228 -07 000000433 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:56:33.228 -07 000000433 INF: Autofocus finished
17-03-17 19:56:33.428 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:33.428 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:33.428 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176734358827938. ----------
17-03-17 19:56:33.428 -07 000000610 INF: Cycle	32	Tile	8	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:33.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37102, sync = True, waitForSettling = True)
17-03-17 19:56:33.438 -07 000000610 INF: Z Motor: Moving to -0.169842 mm, started at -0.176734 mm, distance = 6.89 um
17-03-17 19:56:33.438 -07 000000610 INF: FPGA: Xmit ZDACW 37102\n [Z Motor]
17-03-17 19:56:33.438 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 19:56:33.448 -07 000000610 INF: FPGA: 'ZDACW 37102' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:33.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:33.448 -07 000000475 INF: FPGA: Recv ZDACR 37102
17-03-17 19:56:33.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.608 -07 000000448 INF: FPGA: Recv ZSGSRD 35727
17-03-17 19:56:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.618 -07 000000626 INF: FPGA: Recv ZSGSRD 35724
17-03-17 19:56:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:56:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:56:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:56:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:56:33.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.668 -07 000000415 INF: FPGA: Recv ZSGSRD 35725
17-03-17 19:56:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:56:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:56:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:33.698 -07 000000433 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:56:33.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:33.708 -07 000000482 INF: FPGA: Recv ZPIEZORD 31737
17-03-17 19:56:33.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:33.718 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -8.8 V.
17-03-17 19:56:33.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35728 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35724 (-168.9 uncal um), Max = 35730 (-169.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:56:33.718 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35728, posNoise = 2, negNoise = 4
17-03-17 19:56:33.718 -07 000000610 INF: Z Motor: After move to -0.169842, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:33.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:56:33.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:33.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:33.718 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:33.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:33.718 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:33.718 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:33.718 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:33.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:33.718 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:33.718 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:33.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:56:33.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:33.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:56:33.718 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:33.728 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:56:33.728 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:33.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:56:33.728 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:56:33.738 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:56:33.738 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:56:33.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37279 150\n [Camera]
17-03-17 19:56:33.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:34.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:34.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:34.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:34.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:34.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:34.348 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:34.348 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:34.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:34.358 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:34.358 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:34.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37279 792
17-03-17 19:56:34.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:34.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:56:34.728 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:56:34.728 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:34.728 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:56:34.728 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:56:34.728 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:34.738 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:34.738 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:56:34.738 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:56:34.748 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:56:34.888 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:34.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:34.888 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:34.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:34.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:34.888 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:34.888 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:34.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:56:34.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:34.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:56:35.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:35.078 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:35.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37279 150' command took 2 ms to send, 1332 ms to get response, and 1337 ms overall
17-03-17 19:56:35.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:35.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.16984760341197. ------
17-03-17 19:56:35.198 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:35.198 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17623 mm
17-03-17 19:56:35.198 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:35.198 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:56:35.198 -07 000000541 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 19:56:35.198 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:35.198 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38497, sync = True, waitForSettling = False)
17-03-17 19:56:35.198 -07 000000608 INF: Z Motor: Moving to -0.176228 mm, started at -0.169848 mm, distance = -6.38 um
17-03-17 19:56:35.208 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:35.208 -07 000000608 INF: FPGA: Xmit ZDACW 38497\n [Z Motor]
17-03-17 19:56:35.208 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:56:35.218 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:35.218 -07 000000608 INF: FPGA: 'ZDACW 38497' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:56:35.218 -07 000000415 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:56:35.228 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:35.228 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:56:35.228 -07 000000541 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:35.228 -07 000000541 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:35.228 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:56:35.238 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:35.238 -07 000000480 INF: FPGA: Recv ZDACR 38497
17-03-17 19:56:35.248 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:35.248 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:35.248 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:56:35.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:56:35.288 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:56:35.288 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:35.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:56:35.288 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:56:35.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:35.288 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:35.288 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:56:35.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:35.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:56:35.428 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:35.428 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:35.618 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:56:35.618 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:35.658 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:35.658 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-17 19:56:35.668 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:35.668 -07 000000541 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:35.668 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:56:35.668 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:56:36.618 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:36.618 -07 000000486 INF: FPGA: Recv YRDPOS 136271
17-03-17 19:56:36.628 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:36.628 -07 000000541 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:36.648 -07 000000541 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:36.648 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:36.648 -07 000000541 INF: Y Motor: Moved to 66.5386 after 1447 ms (table move)
17-03-17 19:56:36.648 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176228 mm (DAC = 38497)
17-03-17 19:56:36.648 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.648 -07 000000475 INF: FPGA: Recv ZSGSRD 36721
17-03-17 19:56:36.658 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:56:36.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.658 -07 000000480 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:56:36.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:36.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.668 -07 000000502 INF: FPGA: Recv ZSGSRD 36712
17-03-17 19:56:36.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:56:36.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.688 -07 000000415 INF: FPGA: Recv ZSGSRD 36724
17-03-17 19:56:36.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.698 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.698 -07 000000476 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:56:36.708 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36724
17-03-17 19:56:36.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.718 -07 000000593 INF: FPGA: Recv ZSGSRD 36715
17-03-17 19:56:36.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36718
17-03-17 19:56:36.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:36.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36727
17-03-17 19:56:36.738 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:36.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.748 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:36.748 -07 000000431 INF: FPGA: Recv ZPIEZORD 33049
17-03-17 19:56:36.758 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.1 V.
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36721 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36712 (-175.3 uncal um), Max = 36728 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36721, posNoise = 7, negNoise = 9
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: After move to -0.176228, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:56:36.758 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:36.808 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:56:36.808 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:36.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:36.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:36.808 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:36.808 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:36.808 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:36.808 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:36.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:36.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:36.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:36.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:36.828 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:56:36.828 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:56:36.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:36.868 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:37.068 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:37.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:37.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:37.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:37.108 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:37.108 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:37.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:56:37.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:56:37.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:37.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:37.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:56:37.208 -07 000000608 INF: Autofocus start
17-03-17 19:56:37.208 -07 000000608 INF: MeasureProfile start
17-03-17 19:56:37.208 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:37.208 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:37.218 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:37.218 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:37.218 -07 000000608 INF: MeasureProfile done
17-03-17 19:56:37.218 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:56:37.218 -07 000000608 INF: Autofocus finished
17-03-17 19:56:37.418 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:37.418 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:37.418 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176226846068739. ----------
17-03-17 19:56:37.418 -07 000000610 INF: Cycle	32	Tile	9	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:37.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37030, sync = True, waitForSettling = True)
17-03-17 19:56:37.428 -07 000000610 INF: Z Motor: Moving to -0.169512 mm, started at -0.176227 mm, distance = 6.71 um
17-03-17 19:56:37.428 -07 000000610 INF: FPGA: Xmit ZDACW 37030\n [Z Motor]
17-03-17 19:56:37.428 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 19:56:37.438 -07 000000610 INF: FPGA: 'ZDACW 37030' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:37.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:37.438 -07 000000502 INF: FPGA: Recv ZDACR 37030
17-03-17 19:56:37.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.598 -07 000000459 INF: FPGA: Recv ZSGSRD 35685
17-03-17 19:56:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:56:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:56:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:56:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.638 -07 000000501 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:56:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:56:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.658 -07 000000593 INF: FPGA: Recv ZSGSRD 35673
17-03-17 19:56:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:56:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.678 -07 000000541 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:56:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:37.688 -07 000000501 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:56:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:37.698 -07 000000478 INF: FPGA: Recv ZPIEZORD 31679
17-03-17 19:56:37.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:37.708 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.8 V.
17-03-17 19:56:37.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35677 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:56:37.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35677, posNoise = 8, negNoise = 5
17-03-17 19:56:37.708 -07 000000610 INF: Z Motor: After move to -0.169512, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:37.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:56:37.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:37.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:37.708 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:37.708 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:37.708 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:37.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:37.708 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:37.708 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:37.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:37.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:37.708 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:56:37.708 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:37.718 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:37.718 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:37.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:37.718 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:37.728 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:56:37.728 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:56:37.728 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:56:37.728 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:56:37.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37207 150\n [Camera]
17-03-17 19:56:37.938 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:38.228 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.974486,
17-03-17 19:56:38.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:38.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:38.338 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:38.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:38.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:38.348 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:38.348 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:38.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:38.348 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:38.348 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:38.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37207 792
17-03-17 19:56:38.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:38.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:56:38.718 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:56:38.718 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:38.728 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:56:38.728 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:56:38.728 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:38.728 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:38.728 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:38.728 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:56:38.738 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:56:38.878 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:38.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:38.878 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:38.878 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:38.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:38.888 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:38.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:38.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:38.888 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:38.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:56:39.068 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:56:39.068 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:39.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37207 150' command took 2 ms to send, 1328 ms to get response, and 1338 ms overall
17-03-17 19:56:39.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:39.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169519968592741. ------
17-03-17 19:56:39.078 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:39.078 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17626 mm
17-03-17 19:56:39.078 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:39.078 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:56:39.078 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 19:56:39.078 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38503, sync = True, waitForSettling = False)
17-03-17 19:56:39.078 -07 000000448 INF: Z Motor: Moving to -0.176255 mm, started at -0.169520 mm, distance = -6.74 um
17-03-17 19:56:39.078 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:39.088 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:39.088 -07 000000448 INF: FPGA: Xmit ZDACW 38503\n [Z Motor]
17-03-17 19:56:39.088 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:56:39.098 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:39.098 -07 000000448 INF: FPGA: 'ZDACW 38503' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:39.098 -07 000000476 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:56:39.108 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:39.108 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:56:39.108 -07 000000431 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:39.108 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:39.108 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:56:39.118 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:39.118 -07 000000482 INF: FPGA: Recv ZDACR 38503
17-03-17 19:56:39.128 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:39.128 -07 000000448 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:56:39.128 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:39.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:56:39.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:56:39.288 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:39.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:56:39.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:56:39.288 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:39.288 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:39.298 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:56:39.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:56:39.298 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:56:39.308 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:39.308 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:39.498 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:56:39.498 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:56:39.538 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:39.538 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:56:39.548 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:56:39.548 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:39.548 -07 000000431 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 19:56:39.548 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 19:56:40.498 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:40.498 -07 000000551 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:56:40.508 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:40.508 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:40.528 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:40.528 -07 000000431 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:40.528 -07 000000431 INF: Y Motor: Moved to 67.3716 after 1442 ms (table move)
17-03-17 19:56:40.528 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176255 mm (DAC = 38503)
17-03-17 19:56:40.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:56:40.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:56:40.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.538 -07 000000459 INF: FPGA: Recv ZSGSRD 36718
17-03-17 19:56:40.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.548 -07 000000482 INF: FPGA: Recv ZSGSRD 36724
17-03-17 19:56:40.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36730
17-03-17 19:56:40.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36716
17-03-17 19:56:40.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:56:40.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.588 -07 000000486 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:56:40.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.598 -07 000000501 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:56:40.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.608 -07 000000593 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:56:40.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:40.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:56:40.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.628 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:40.628 -07 000000608 INF: FPGA: Recv ZPIEZORD 33068
17-03-17 19:56:40.638 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.1 V.
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36724 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36725 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36716 (-175.3 uncal um), Max = 36732 (-175.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36724, posNoise = 8, negNoise = 8
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: After move to -0.176255, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:56:40.638 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:40.688 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:56:40.688 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:40.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:40.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:40.688 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:40.688 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:40.688 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:40.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:40.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:40.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:40.698 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:40.698 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:40.708 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:56:40.708 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:56:40.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:40.758 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:40.958 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:40.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:40.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:40.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:56:40.988 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:40.998 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:40.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:56:41.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:56:41.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:41.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:41.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:56:41.098 -07 000000480 INF: Autofocus start
17-03-17 19:56:41.098 -07 000000480 INF: MeasureProfile start
17-03-17 19:56:41.098 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:41.098 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:41.108 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:41.108 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:41.108 -07 000000480 INF: MeasureProfile done
17-03-17 19:56:41.108 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:56:41.108 -07 000000480 INF: Autofocus finished
17-03-17 19:56:41.308 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:41.308 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:41.308 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176246118705164. ----------
17-03-17 19:56:41.308 -07 000000610 INF: Cycle	32	Tile	10	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:41.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-17 19:56:41.318 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.176246 mm, distance = 6.71 um
17-03-17 19:56:41.318 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-17 19:56:41.318 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:56:41.328 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:41.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:41.328 -07 000000478 INF: FPGA: Recv ZDACR 37036
17-03-17 19:56:41.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:41.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.488 -07 000000431 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:56:41.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.498 -07 000000476 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:56:41.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35686
17-03-17 19:56:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.518 -07 000000415 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:56:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.528 -07 000000478 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:56:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.538 -07 000000608 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:56:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35683
17-03-17 19:56:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.558 -07 000000475 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:56:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.568 -07 000000551 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:56:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:41.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:56:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:41.588 -07 000000502 INF: FPGA: Recv ZPIEZORD 31666
17-03-17 19:56:41.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:41.598 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 19:56:41.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35675 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:41.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 5, negNoise = 6
17-03-17 19:56:41.598 -07 000000610 INF: Z Motor: After move to -0.169540, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:41.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:56:41.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:41.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:41.598 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:41.598 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:41.598 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:41.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:41.598 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:41.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:41.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:41.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:41.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:41.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:41.608 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:41.608 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:41.608 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:41.608 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:41.618 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:56:41.618 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:56:41.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:56:41.618 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:56:41.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37213 150\n [Camera]
17-03-17 19:56:41.738 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:41.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:42.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:42.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:42.228 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:42.228 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:42.228 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:56:42.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:42.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:42.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:42.228 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:42.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:56:42.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 792
17-03-17 19:56:42.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:42.608 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:56:42.608 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:56:42.608 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:42.608 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:42.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:56:42.618 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:56:42.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:42.618 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:56:42.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:42.618 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:56:42.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:42.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:42.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:42.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:42.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:56:42.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:42.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:42.768 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:42.768 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:42.768 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:56:42.958 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:42.958 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:42.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37213 150' command took 2 ms to send, 1332 ms to get response, and 1337 ms overall
17-03-17 19:56:42.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:42.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169545665441308. ------
17-03-17 19:56:42.958 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:42.958 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17587 mm
17-03-17 19:56:42.958 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:43.078 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:43.078 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 19:56:43.078 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:43.078 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:56:43.078 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 19:56:43.078 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38418, sync = True, waitForSettling = False)
17-03-17 19:56:43.078 -07 000000626 INF: Z Motor: Moving to -0.175866 mm, started at -0.169546 mm, distance = -6.32 um
17-03-17 19:56:43.088 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:43.088 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-17 19:56:43.098 -07 000000626 INF: FPGA: Xmit ZDACW 38418\n [Z Motor]
17-03-17 19:56:43.098 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:56:43.098 -07 000000448 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:43.098 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:43.098 -07 000000448 INF: Y Motor: Moving 1346 steps-23
17-03-17 19:56:43.098 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:56:43.108 -07 000000626 INF: FPGA: 'ZDACW 38418' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:56:43.108 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:43.108 -07 000000012 INF: FPGA: Recv ZDACR 38418
17-03-17 19:56:43.118 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:43.118 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:43.118 -07 000000626 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:56:43.158 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:56:43.158 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:56:43.158 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:43.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:56:43.158 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:56:43.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:43.158 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:43.168 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:56:43.168 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:56:43.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:56:43.278 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:43.278 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:56:43.488 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:56:43.488 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:43.528 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:43.528 -07 000000547 INF: FPGA: Recv YRDPOS 139682
17-03-17 19:56:43.538 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:43.538 -07 000000448 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:43.538 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:56:43.538 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec
17-03-17 19:56:43.588 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.978563,
17-03-17 19:56:44.488 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:44.488 -07 000000475 INF: FPGA: Recv YRDPOS 139683
17-03-17 19:56:44.498 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:44.498 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:44.518 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:44.518 -07 000000448 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:56:44.518 -07 000000448 INF: Y Motor: Moved to 68.2046 after 1436 ms (table move)
17-03-17 19:56:44.518 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175866 mm (DAC = 38418)
17-03-17 19:56:44.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.518 -07 000000431 INF: FPGA: Recv ZSGSRD 36664
17-03-17 19:56:44.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:56:44.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36666
17-03-17 19:56:44.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.538 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.538 -07 000000593 INF: FPGA: Recv ZSGSRD 36657
17-03-17 19:56:44.548 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.548 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.548 -07 000000475 INF: FPGA: Recv ZSGSRD 36670
17-03-17 19:56:44.558 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.558 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.558 -07 000000501 INF: FPGA: Recv ZSGSRD 36669
17-03-17 19:56:44.568 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.568 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.568 -07 000000551 INF: FPGA: Recv ZSGSRD 36664
17-03-17 19:56:44.578 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.578 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.578 -07 000000608 INF: FPGA: Recv ZSGSRD 36665
17-03-17 19:56:44.588 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.588 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.588 -07 000000547 INF: FPGA: Recv ZSGSRD 36662
17-03-17 19:56:44.598 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.598 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36656
17-03-17 19:56:44.608 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.608 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:44.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36669
17-03-17 19:56:44.618 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.618 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:44.618 -07 000000593 INF: FPGA: Recv ZPIEZORD 32992
17-03-17 19:56:44.628 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.1 V.
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36664 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36656 (-174.9 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 6, negNoise = 8
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: After move to -0.175866, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:56:44.628 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:44.678 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 19:56:44.678 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:44.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:44.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:44.678 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:44.678 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:44.678 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:44.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:44.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:44.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:44.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:44.688 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:44.698 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:56:44.698 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:56:44.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:44.748 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:44.948 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:44.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:44.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:44.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:44.978 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:44.988 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:44.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:56:45.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:56:45.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:45.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:45.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:56:45.088 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:45.088 -07 000000486 INF: Autofocus start
17-03-17 19:56:45.088 -07 000000486 INF: MeasureProfile start
17-03-17 19:56:45.088 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:45.098 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:45.098 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:45.098 -07 000000486 INF: MeasureProfile done
17-03-17 19:56:45.098 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:56:45.098 -07 000000486 INF: Autofocus finished
17-03-17 19:56:45.298 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:45.298 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:56:45.298 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175860665976659. ----------
17-03-17 19:56:45.298 -07 000000610 INF: Cycle	32	Tile	11	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:45.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36933, sync = True, waitForSettling = True)
17-03-17 19:56:45.308 -07 000000610 INF: Z Motor: Moving to -0.169068 mm, started at -0.175861 mm, distance = 6.79 um
17-03-17 19:56:45.308 -07 000000610 INF: FPGA: Xmit ZDACW 36933\n [Z Motor]
17-03-17 19:56:45.308 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:56:45.318 -07 000000610 INF: FPGA: 'ZDACW 36933' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:45.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:45.318 -07 000000475 INF: FPGA: Recv ZDACR 36933
17-03-17 19:56:45.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.478 -07 000000482 INF: FPGA: Recv ZSGSRD 35606
17-03-17 19:56:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.488 -07 000000593 INF: FPGA: Recv ZSGSRD 35611
17-03-17 19:56:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35607
17-03-17 19:56:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:56:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.518 -07 000000012 INF: FPGA: Recv ZSGSRD 35610
17-03-17 19:56:45.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.528 -07 000000459 INF: FPGA: Recv ZSGSRD 35607
17-03-17 19:56:45.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35599
17-03-17 19:56:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.548 -07 000000501 INF: FPGA: Recv ZSGSRD 35600
17-03-17 19:56:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:56:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:45.568 -07 000000475 INF: FPGA: Recv ZSGSRD 35613
17-03-17 19:56:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:45.578 -07 000000459 INF: FPGA: Recv ZPIEZORD 31558
17-03-17 19:56:45.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:45.588 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.9 V.
17-03-17 19:56:45.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35606 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35599 (-168.1 uncal um), Max = 35613 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:56:45.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35606, posNoise = 7, negNoise = 7
17-03-17 19:56:45.588 -07 000000610 INF: Z Motor: After move to -0.169068, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:45.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:56:45.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:45.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:45.588 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:45.588 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:45.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:45.588 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:45.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:45.588 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:45.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:45.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:45.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:45.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:45.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:56:45.588 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:45.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:45.588 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:45.598 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:56:45.598 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:45.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:56:45.598 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:56:45.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37110 150\n [Camera]
17-03-17 19:56:45.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:46.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:46.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:46.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:46.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:46.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:46.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:46.218 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:46.218 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:46.228 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:46.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:46.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37110 792
17-03-17 19:56:46.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:46.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:56:46.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:56:46.588 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:46.598 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:46.598 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:56:46.598 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:56:46.598 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:56:46.598 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:46.598 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:46.608 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:56:46.738 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:46.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:46.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:46.748 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:46.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:46.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:46.758 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:46.758 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:46.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:56:46.878 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:46.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:56:46.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:46.938 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:46.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37110 150' command took 2 ms to send, 1328 ms to get response, and 1337 ms overall
17-03-17 19:56:46.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:46.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169063849530676. ------
17-03-17 19:56:46.948 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:46.948 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17568 mm
17-03-17 19:56:46.948 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:46.948 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:56:46.948 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 19:56:46.948 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38377, sync = True, waitForSettling = False)
17-03-17 19:56:46.948 -07 000000547 INF: Z Motor: Moving to -0.175679 mm, started at -0.169064 mm, distance = -6.61 um
17-03-17 19:56:46.948 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:46.958 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:56:46.958 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:46.958 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-17 19:56:46.968 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:56:46.968 -07 000000547 INF: FPGA: Xmit ZDACW 38377\n [Z Motor]
17-03-17 19:56:46.968 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:46.968 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:46.968 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:56:46.968 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:56:46.978 -07 000000547 INF: FPGA: 'ZDACW 38377' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:56:46.978 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:46.988 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:46.998 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:46.998 -07 000000501 INF: FPGA: Recv ZDACR 38377
17-03-17 19:56:47.008 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:47.008 -07 000000547 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:56:47.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:56:47.148 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:56:47.148 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:47.148 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:47.148 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:56:47.178 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:47.178 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:56:47.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:56:47.258 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:56:47.258 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:47.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:56:47.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 19:56:47.358 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:56:47.358 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:47.398 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:47.398 -07 000000459 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:56:47.408 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:47.408 -07 000000480 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:47.408 -07 000000480 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:56:47.408 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:56:48.358 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:48.358 -07 000000486 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:56:48.368 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:48.368 -07 000000480 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:48.388 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:48.388 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:48.388 -07 000000480 INF: Y Motor: Moved to 69.0269 after 1435 ms (table move)
17-03-17 19:56:48.388 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175679 mm (DAC = 38377)
17-03-17 19:56:48.388 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.388 -07 000000475 INF: FPGA: Recv ZSGSRD 36637
17-03-17 19:56:48.398 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:48.398 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.398 -07 000000462 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:56:48.408 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.408 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.408 -07 000000547 INF: FPGA: Recv ZSGSRD 36641
17-03-17 19:56:48.418 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36634
17-03-17 19:56:48.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.428 -07 000000480 INF: FPGA: Recv ZSGSRD 36639
17-03-17 19:56:48.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36635
17-03-17 19:56:48.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.448 -07 000000462 INF: FPGA: Recv ZSGSRD 36639
17-03-17 19:56:48.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.458 -07 000000547 INF: FPGA: Recv ZSGSRD 36629
17-03-17 19:56:48.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36633
17-03-17 19:56:48.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:48.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36641
17-03-17 19:56:48.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.488 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:48.488 -07 000000459 INF: FPGA: Recv ZPIEZORD 32895
17-03-17 19:56:48.498 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.3 V.
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36638 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36629 (-174.7 uncal um), Max = 36643 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 6, negNoise = 8
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: After move to -0.175679, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:56:48.498 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:48.548 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:56:48.548 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:48.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:48.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:48.548 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:48.548 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:48.548 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:48.548 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:48.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:48.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:48.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:56:48.558 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:48.568 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:56:48.568 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:56:48.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:48.618 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:48.818 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:48.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:48.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:48.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:48.858 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:48.858 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:48.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:56:48.948 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.016692,
17-03-17 19:56:48.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:56:48.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:48.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:48.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:56:48.958 -07 000000501 INF: Autofocus start
17-03-17 19:56:48.958 -07 000000501 INF: MeasureProfile start
17-03-17 19:56:48.968 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:48.968 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:48.968 -07 000000501 INF: MeasureProfile done
17-03-17 19:56:48.968 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:56:48.968 -07 000000501 INF: Autofocus finished
17-03-17 19:56:48.978 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:56:48.998 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:49.198 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:49.198 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:49.198 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175687212248831. ----------
17-03-17 19:56:49.198 -07 000000610 INF: Cycle	32	Tile	12	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:49.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36874, sync = True, waitForSettling = True)
17-03-17 19:56:49.198 -07 000000610 INF: Z Motor: Moving to -0.168798 mm, started at -0.175687 mm, distance = 6.89 um
17-03-17 19:56:49.208 -07 000000610 INF: FPGA: Xmit ZDACW 36874\n [Z Motor]
17-03-17 19:56:49.208 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:56:49.218 -07 000000610 INF: FPGA: 'ZDACW 36874' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:49.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:49.218 -07 000000462 INF: FPGA: Recv ZDACR 36874
17-03-17 19:56:49.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:56:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.388 -07 000000501 INF: FPGA: Recv ZSGSRD 35564
17-03-17 19:56:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35567
17-03-17 19:56:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35569
17-03-17 19:56:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.418 -07 000000462 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:56:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.428 -07 000000475 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:56:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35564
17-03-17 19:56:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.448 -07 000000551 INF: FPGA: Recv ZSGSRD 35563
17-03-17 19:56:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.458 -07 000000608 INF: FPGA: Recv ZSGSRD 35564
17-03-17 19:56:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:49.468 -07 000000547 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:56:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:49.478 -07 000000502 INF: FPGA: Recv ZPIEZORD 31502
17-03-17 19:56:49.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:49.488 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.0 V.
17-03-17 19:56:49.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35566 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35566 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35571 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:56:49.488 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35566, posNoise = 5, negNoise = 3
17-03-17 19:56:49.488 -07 000000610 INF: Z Motor: After move to -0.168798, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:49.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:56:49.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:49.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:49.488 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:49.488 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:49.488 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:49.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:49.488 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:49.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:49.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:49.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:49.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:49.488 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:49.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:49.488 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:49.498 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:56:49.498 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:49.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:56:49.498 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:49.508 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:56:49.508 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:56:49.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 37050 150\n [Camera]
17-03-17 19:56:49.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:50.118 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:50.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:50.118 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:50.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:50.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:50.118 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:50.118 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:50.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:50.118 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:50.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:50.308 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37050 792
17-03-17 19:56:50.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:50.488 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 19:56:50.488 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:56:50.488 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:50.498 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:50.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:56:50.498 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:56:50.498 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:50.498 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:50.498 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:56:50.498 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:56:50.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:50.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:50.658 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:50.658 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:50.658 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:50.658 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:56:50.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:50.658 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:50.658 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:50.658 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:56:50.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:56:50.848 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:50.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 37050 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:56:50.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:50.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168806881045005. ------
17-03-17 19:56:50.848 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17515 mm
17-03-17 19:56:50.848 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:50.848 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:50.848 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:56:50.848 -07 000000459 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 19:56:50.848 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:50.858 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:50.858 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:50.858 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38261, sync = True, waitForSettling = False)
17-03-17 19:56:50.858 -07 000000476 INF: Z Motor: Moving to -0.175148 mm, started at -0.168807 mm, distance = -6.34 um
17-03-17 19:56:50.858 -07 000000012 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:56:50.868 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:56:50.868 -07 000000459 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:50.868 -07 000000459 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:50.868 -07 000000459 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:56:50.868 -07 000000476 INF: FPGA: Xmit ZDACW 38261\n [Z Motor]
17-03-17 19:56:50.868 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:56:50.878 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:50.878 -07 000000476 INF: FPGA: 'ZDACW 38261' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:50.888 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:50.898 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:50.898 -07 000000433 INF: FPGA: Recv ZDACR 38261
17-03-17 19:56:50.908 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:50.908 -07 000000476 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:56:51.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:56:51.048 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:56:51.048 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:51.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:56:51.048 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:56:51.048 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:51.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:51.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:56:51.058 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:51.068 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:56:51.078 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:51.078 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:51.258 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:56:51.258 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:56:51.298 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:51.298 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-17 19:56:51.308 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:51.308 -07 000000459 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:51.308 -07 000000459 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:56:51.308 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 19:56:51.738 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:52.258 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:52.258 -07 000000480 INF: FPGA: Recv YRDPOS 143079
17-03-17 19:56:52.268 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:52.268 -07 000000459 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:52.288 -07 000000459 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:52.288 -07 000000459 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:52.288 -07 000000459 INF: Y Motor: Moved to 69.8628 after 1433 ms (table move)
17-03-17 19:56:52.288 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175148 mm (DAC = 38261)
17-03-17 19:56:52.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.288 -07 000000608 INF: FPGA: Recv ZSGSRD 36554
17-03-17 19:56:52.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:52.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.298 -07 000000541 INF: FPGA: Recv ZSGSRD 36553
17-03-17 19:56:52.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36561
17-03-17 19:56:52.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36556
17-03-17 19:56:52.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.328 -07 000000593 INF: FPGA: Recv ZSGSRD 36556
17-03-17 19:56:52.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.338 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.338 -07 000000480 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:56:52.348 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.348 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36557
17-03-17 19:56:52.358 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.358 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36549
17-03-17 19:56:52.368 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.368 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.368 -07 000000626 INF: FPGA: Recv ZSGSRD 36548
17-03-17 19:56:52.378 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.378 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:52.378 -07 000000462 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:56:52.388 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.388 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:52.388 -07 000000608 INF: FPGA: Recv ZPIEZORD 32806
17-03-17 19:56:52.398 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.3 V.
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36554 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36555 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36548 (-174.2 uncal um), Max = 36561 (-174.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36554, posNoise = 7, negNoise = 6
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: After move to -0.175148, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:56:52.398 -07 000000551 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:52.448 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:56:52.448 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:52.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:52.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:52.448 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:52.448 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:52.448 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:52.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:52.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:52.448 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:52.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:52.458 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:52.468 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:56:52.468 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:56:52.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:52.518 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:52.718 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:52.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:52.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:52.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:56:52.758 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:52.758 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:52.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:56:52.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:56:52.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:52.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:52.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:56:52.858 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:52.858 -07 000000448 INF: Autofocus start
17-03-17 19:56:52.858 -07 000000448 INF: MeasureProfile start
17-03-17 19:56:52.868 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:52.868 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:52.868 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:52.868 -07 000000448 INF: MeasureProfile done
17-03-17 19:56:52.868 -07 000000448 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:56:52.878 -07 000000448 INF: Autofocus finished
17-03-17 19:56:53.068 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:53.068 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:53.068 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175154002641065. ----------
17-03-17 19:56:53.078 -07 000000610 INF: Cycle	32	Tile	13	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:53.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36794, sync = True, waitForSettling = True)
17-03-17 19:56:53.078 -07 000000610 INF: Z Motor: Moving to -0.168432 mm, started at -0.175154 mm, distance = 6.72 um
17-03-17 19:56:53.078 -07 000000610 INF: FPGA: Xmit ZDACW 36794\n [Z Motor]
17-03-17 19:56:53.078 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:56:53.088 -07 000000610 INF: FPGA: 'ZDACW 36794' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:56:53.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:53.088 -07 000000551 INF: FPGA: Recv ZDACR 36794
17-03-17 19:56:53.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35514
17-03-17 19:56:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:56:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35516
17-03-17 19:56:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.278 -07 000000486 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:56:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:56:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:56:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.318 -07 000000448 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:56:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:56:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.328 -07 000000475 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:56:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.338 -07 000000415 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:56:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:53.348 -07 000000476 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:56:53.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:53.358 -07 000000551 INF: FPGA: Recv ZPIEZORD 31428
17-03-17 19:56:53.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:53.368 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.0 V.
17-03-17 19:56:53.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35510 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35510 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35505 (-167.5 uncal um), Max = 35516 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:56:53.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35510, posNoise = 6, negNoise = 5
17-03-17 19:56:53.368 -07 000000610 INF: Z Motor: After move to -0.168432, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:53.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 19:56:53.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:53.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:53.368 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:53.368 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:53.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:53.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:53.368 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:53.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:53.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:56:53.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:53.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:53.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:53.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:56:53.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:53.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:56:53.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:53.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:56:53.378 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:53.388 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:56:53.388 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:56:53.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36971 150\n [Camera]
17-03-17 19:56:53.588 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:56:53.988 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:53.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:53.998 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:53.998 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:53.998 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:56:53.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:53.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:53.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:53.998 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:53.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:56:54.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36971 792
17-03-17 19:56:54.318 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.005817,
17-03-17 19:56:54.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:54.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:56:54.378 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:56:54.378 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:54.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:56:54.378 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:56:54.378 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:54.378 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:56:54.378 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:56:54.388 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:56:54.388 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:56:54.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:54.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:54.528 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:54.528 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:54.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:56:54.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:54.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:54.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:54.538 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:54.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:56:54.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:56:54.718 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:54.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36971 150' command took 2 ms to send, 1329 ms to get response, and 1337 ms overall
17-03-17 19:56:54.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:54.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168447125165067. ------
17-03-17 19:56:54.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:54.848 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17487 mm
17-03-17 19:56:54.848 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:54.848 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:54.848 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38200, sync = True, waitForSettling = False)
17-03-17 19:56:54.848 -07 000000482 INF: Z Motor: Moving to -0.174868 mm, started at -0.168447 mm, distance = -6.42 um
17-03-17 19:56:54.848 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:56:54.848 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 19:56:54.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:54.858 -07 000000482 INF: FPGA: Xmit ZDACW 38200\n [Z Motor]
17-03-17 19:56:54.858 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:56:54.868 -07 000000482 INF: FPGA: 'ZDACW 38200' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:56:54.868 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:54.868 -07 000000462 INF: FPGA: Recv YRDPOS 143079
17-03-17 19:56:54.878 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:54.878 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:56:54.878 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:54.878 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:54.878 -07 000000415 INF: Y Motor: Moving 1344 steps-20
17-03-17 19:56:54.888 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:54.888 -07 000000433 INF: FPGA: Recv ZDACR 38200
17-03-17 19:56:54.898 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:54.898 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:54.898 -07 000000482 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:56:54.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:56:54.918 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:56:54.918 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:54.918 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:56:54.918 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:56:54.918 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:54.918 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:54.928 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:56:54.928 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:56:54.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:56:55.078 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:55.078 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:56:55.278 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:56:55.278 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 19:56:55.308 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:55.308 -07 000000462 INF: FPGA: Recv YRDPOS 144769
17-03-17 19:56:55.318 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:56:55.318 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:55.318 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:56:55.318 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.094 mm/sec
17-03-17 19:56:56.268 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:56.268 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-17 19:56:56.278 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:56.278 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:56.298 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:56:56.298 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:56:56.298 -07 000000415 INF: Y Motor: Moved to 70.6880 after 1446 ms (table move)
17-03-17 19:56:56.298 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174868 mm (DAC = 38200)
17-03-17 19:56:56.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36515
17-03-17 19:56:56.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:56.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36505
17-03-17 19:56:56.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36512
17-03-17 19:56:56.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.328 -07 000000626 INF: FPGA: Recv ZSGSRD 36507
17-03-17 19:56:56.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.338 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36518
17-03-17 19:56:56.348 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.348 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.348 -07 000000482 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:56:56.358 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.358 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36508
17-03-17 19:56:56.368 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.368 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.368 -07 000000475 INF: FPGA: Recv ZSGSRD 36509
17-03-17 19:56:56.378 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.378 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.378 -07 000000593 INF: FPGA: Recv ZSGSRD 36511
17-03-17 19:56:56.388 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.388 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:56.388 -07 000000012 INF: FPGA: Recv ZSGSRD 36509
17-03-17 19:56:56.398 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.398 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:56.398 -07 000000608 INF: FPGA: Recv ZPIEZORD 32762
17-03-17 19:56:56.408 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.3 V.
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36505 (-174.0 uncal um), Max = 36518 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 7, negNoise = 6
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: After move to -0.174868, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:56:56.408 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:56:56.458 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 19:56:56.458 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:56:56.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:56.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:56.458 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:56.458 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:56.458 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:56:56.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:56.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:56:56.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:56:56.468 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:56.468 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:56:56.478 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:56:56.478 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:56:56.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:56:56.518 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:56:56.718 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:56:56.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:56:56.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:56:56.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:56:56.738 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:56:56.758 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:56:56.758 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:56:56.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:56:56.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:56:56.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:56.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:56:56.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:56:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:56:56.958 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:56.958 -07 000000431 INF: Autofocus start
17-03-17 19:56:56.958 -07 000000431 INF: MeasureProfile start
17-03-17 19:56:56.958 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:56.968 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:56:56.968 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:56:56.968 -07 000000431 INF: MeasureProfile done
17-03-17 19:56:56.968 -07 000000431 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:56:56.968 -07 000000431 INF: Autofocus finished
17-03-17 19:56:57.168 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:56:57.168 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:56:57.168 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174877761518969. ----------
17-03-17 19:56:57.168 -07 000000610 INF: Cycle	32	Tile	14	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:56:57.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36680, sync = True, waitForSettling = True)
17-03-17 19:56:57.178 -07 000000610 INF: Z Motor: Moving to -0.167910 mm, started at -0.174878 mm, distance = 6.97 um
17-03-17 19:56:57.178 -07 000000610 INF: FPGA: Xmit ZDACW 36680\n [Z Motor]
17-03-17 19:56:57.178 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 19:56:57.188 -07 000000610 INF: FPGA: 'ZDACW 36680' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:56:57.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:57.188 -07 000000012 INF: FPGA: Recv ZDACR 36680
17-03-17 19:56:57.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:56:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.348 -07 000000415 INF: FPGA: Recv ZSGSRD 35431
17-03-17 19:56:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:56:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35432
17-03-17 19:56:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.368 -07 000000482 INF: FPGA: Recv ZSGSRD 35432
17-03-17 19:56:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35424
17-03-17 19:56:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35424
17-03-17 19:56:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.398 -07 000000476 INF: FPGA: Recv ZSGSRD 35431
17-03-17 19:56:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.408 -07 000000541 INF: FPGA: Recv ZSGSRD 35424
17-03-17 19:56:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.418 -07 000000593 INF: FPGA: Recv ZSGSRD 35434
17-03-17 19:56:57.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35427
17-03-17 19:56:57.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:56:57.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35429
17-03-17 19:56:57.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:56:57.448 -07 000000448 INF: FPGA: Recv ZPIEZORD 31352
17-03-17 19:56:57.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:56:57.458 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.0 V.
17-03-17 19:56:57.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35429 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35430 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35424 (-167.0 uncal um), Max = 35434 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:56:57.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35429, posNoise = 5, negNoise = 5
17-03-17 19:56:57.458 -07 000000610 INF: Z Motor: After move to -0.167910, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:56:57.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:56:57.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:56:57.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:56:57.458 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:56:57.458 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:56:57.458 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:56:57.458 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:56:57.458 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:56:57.458 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:56:57.458 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:56:57.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:56:57.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:56:57.458 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:56:57.468 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:56:57.468 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:56:57.468 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:56:57.468 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:56:57.478 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:56:57.478 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:56:57.478 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:56:57.478 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:56:57.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36856 150\n [Camera]
17-03-17 19:56:57.678 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:56:58.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:56:58.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:56:58.088 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:58.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:56:58.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:56:58.088 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:58.088 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:58.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:56:58.088 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:58.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:56:58.278 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36856 794
17-03-17 19:56:58.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:56:58.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:56:58.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:56:58.468 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:58.468 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:56:58.468 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:56:58.468 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:58.468 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:58.478 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:56:58.478 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:56:58.478 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:56:58.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:56:58.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:56:58.628 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:56:58.628 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:56:58.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:56:58.628 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:56:58.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:56:58.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:56:58.638 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:56:58.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:56:58.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:56:58.818 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:56:58.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36856 150' command took 2 ms to send, 1330 ms to get response, and 1337 ms overall
17-03-17 19:56:58.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:56:58.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167926763981584. ------
17-03-17 19:56:58.818 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:56:58.818 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17467 mm
17-03-17 19:56:58.818 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:56:58.818 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:56:58.818 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 19:56:58.818 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38157, sync = True, waitForSettling = False)
17-03-17 19:56:58.818 -07 000000626 INF: Z Motor: Moving to -0.174672 mm, started at -0.167927 mm, distance = -6.74 um
17-03-17 19:56:58.818 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:56:58.828 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:58.938 -07 000000626 INF: FPGA: Xmit ZDACW 38157\n [Z Motor]
17-03-17 19:56:58.938 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:56:58.948 -07 000000626 INF: FPGA: 'ZDACW 38157' command took 116 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 19:56:58.948 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:58.948 -07 000000476 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:56:58.958 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 19:56:58.958 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:58.958 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:56:58.958 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:56:58.958 -07 000000501 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:56:58.968 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:56:58.968 -07 000000541 INF: FPGA: Recv ZDACR 38157
17-03-17 19:56:58.978 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:56:58.978 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:56:58.978 -07 000000626 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 19:56:59.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:56:59.008 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:56:59.008 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:59.018 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:59.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:56:59.018 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:56:59.018 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:56:59.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:56:59.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:56:59.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:56:59.158 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:56:59.158 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-17 19:56:59.348 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:56:59.348 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:56:59.388 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:56:59.388 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 19:56:59.398 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:56:59.398 -07 000000501 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:56:59.398 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:56:59.398 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 19:56:59.678 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.985358,
17-03-17 19:57:00.348 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:00.348 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-17 19:57:00.358 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:00.358 -07 000000501 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:00.378 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:00.378 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:00.378 -07 000000501 INF: Y Motor: Moved to 71.5186 after 1554 ms (table move)
17-03-17 19:57:00.378 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174672 mm (DAC = 38157)
17-03-17 19:57:00.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.378 -07 000000626 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:57:00.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:00.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.388 -07 000000476 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:57:00.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.398 -07 000000478 INF: FPGA: Recv ZSGSRD 36480
17-03-17 19:57:00.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.408 -07 000000486 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:57:00.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.418 -07 000000547 INF: FPGA: Recv ZSGSRD 36489
17-03-17 19:57:00.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36480
17-03-17 19:57:00.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.438 -07 000000502 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:57:00.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.448 -07 000000415 INF: FPGA: Recv ZSGSRD 36478
17-03-17 19:57:00.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.458 -07 000000541 INF: FPGA: Recv ZSGSRD 36475
17-03-17 19:57:00.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:00.468 -07 000000547 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:57:00.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.478 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:00.478 -07 000000448 INF: FPGA: Recv ZPIEZORD 32794
17-03-17 19:57:00.488 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.2 V.
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36480 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36480 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36475 (-173.8 uncal um), Max = 36489 (-173.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36480, posNoise = 9, negNoise = 5
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: After move to -0.174672, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: Settle wait time = 1557 ms, measure time = 106 ms (allowed 150 ms), total time = 1663 ms
17-03-17 19:57:00.488 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:00.538 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 19:57:00.538 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:00.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:00.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:00.538 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:00.538 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:00.538 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:00.538 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:00.538 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:00.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:00.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:00.548 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:00.548 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:57:00.548 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:57:00.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:00.598 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:00.798 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:00.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:00.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:00.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:00.838 -07 000000012 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:57:00.848 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:00.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 19:57:00.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:57:00.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:00.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:57:00.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:57:00.948 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:00.948 -07 000000475 INF: Autofocus start
17-03-17 19:57:00.948 -07 000000475 INF: MeasureProfile start
17-03-17 19:57:00.948 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:00.958 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:00.958 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:00.968 -07 000000475 INF: MeasureProfile done
17-03-17 19:57:00.968 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:57:00.968 -07 000000475 INF: Autofocus finished
17-03-17 19:57:01.158 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:01.158 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:57:01.158 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174678610942575. ----------
17-03-17 19:57:01.158 -07 000000610 INF: Cycle	32	Tile	15	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:01.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36690, sync = True, waitForSettling = True)
17-03-17 19:57:01.168 -07 000000610 INF: Z Motor: Moving to -0.167956 mm, started at -0.174679 mm, distance = 6.72 um
17-03-17 19:57:01.168 -07 000000610 INF: FPGA: Xmit ZDACW 36690\n [Z Motor]
17-03-17 19:57:01.168 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:57:01.178 -07 000000610 INF: FPGA: 'ZDACW 36690' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:01.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:01.178 -07 000000593 INF: FPGA: Recv ZDACR 36690
17-03-17 19:57:01.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:57:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.348 -07 000000433 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:57:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:57:01.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.368 -07 000000431 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:57:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.378 -07 000000012 INF: FPGA: Recv ZSGSRD 35423
17-03-17 19:57:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.388 -07 000000541 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:57:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.398 -07 000000478 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:57:01.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.408 -07 000000486 INF: FPGA: Recv ZSGSRD 35435
17-03-17 19:57:01.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.418 -07 000000501 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:57:01.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:01.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:57:01.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:01.438 -07 000000415 INF: FPGA: Recv ZPIEZORD 31394
17-03-17 19:57:01.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:01.448 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -8.9 V.
17-03-17 19:57:01.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35437 (-167.1 uncal um), Error = 0.8 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35423 (-167.0 uncal um), Max = 35442 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 19:57:01.448 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35437, posNoise = 5, negNoise = 14
17-03-17 19:57:01.448 -07 000000610 INF: Z Motor: After move to -0.167956, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:01.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:57:01.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:01.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:01.448 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:01.448 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:01.448 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:01.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:01.448 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:01.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:01.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:01.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:01.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:01.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:01.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:01.448 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:01.458 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:57:01.458 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:01.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:57:01.468 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:57:01.468 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:57:01.468 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:57:01.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36867 150\n [Camera]
17-03-17 19:57:01.668 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:01.738 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:02.078 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:57:02.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:57:02.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:02.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:57:02.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:57:02.088 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:02.088 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:02.088 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:02.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:02.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:02.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36867 792
17-03-17 19:57:02.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:02.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:57:02.478 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:57:02.478 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:02.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:57:02.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:57:02.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:02.478 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:02.478 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:57:02.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:02.488 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:57:02.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:02.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:02.618 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:02.618 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:02.618 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:02.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:02.618 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:57:02.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:02.618 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:02.618 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:57:02.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:57:02.808 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:02.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36867 150' command took 2 ms to send, 1326 ms to get response, and 1338 ms overall
17-03-17 19:57:02.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:57:02.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167978157678718. ------
17-03-17 19:57:02.818 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17388 mm
17-03-17 19:57:02.818 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:02.818 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:02.818 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37983, sync = True, waitForSettling = False)
17-03-17 19:57:02.818 -07 000000462 INF: Z Motor: Moving to -0.173875 mm, started at -0.167978 mm, distance = -5.90 um
17-03-17 19:57:02.818 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:57:02.818 -07 000000593 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 19:57:02.818 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:02.828 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:02.828 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:02.828 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:57:02.838 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:57:02.838 -07 000000593 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:02.838 -07 000000462 INF: FPGA: Xmit ZDACW 37983\n [Z Motor]
17-03-17 19:57:02.838 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:57:02.838 -07 000000593 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:02.838 -07 000000593 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:57:02.848 -07 000000462 INF: FPGA: 'ZDACW 37983' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:57:02.848 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:02.858 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:02.868 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:02.868 -07 000000626 INF: FPGA: Recv ZDACR 37983
17-03-17 19:57:02.878 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:02.878 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:57:03.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:57:03.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:57:03.028 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:03.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:57:03.028 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:57:03.028 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:03.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:03.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:57:03.028 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:03.038 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:57:03.048 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:03.048 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:57:03.228 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:57:03.228 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:57:03.268 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:03.268 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:57:03.278 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:03.278 -07 000000593 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:03.278 -07 000000593 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:57:03.278 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 19:57:04.228 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:04.228 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:57:04.238 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:04.238 -07 000000593 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:04.258 -07 000000593 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:04.258 -07 000000593 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:04.258 -07 000000593 INF: Y Motor: Moved to 72.3491 after 1437 ms (table move)
17-03-17 19:57:04.258 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173875 mm (DAC = 37983)
17-03-17 19:57:04.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.258 -07 000000475 INF: FPGA: Recv ZSGSRD 36356
17-03-17 19:57:04.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:04.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.268 -07 000000482 INF: FPGA: Recv ZSGSRD 36363
17-03-17 19:57:04.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36346
17-03-17 19:57:04.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36355
17-03-17 19:57:04.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36359
17-03-17 19:57:04.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36360
17-03-17 19:57:04.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36356
17-03-17 19:57:04.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.328 -07 000000476 INF: FPGA: Recv ZSGSRD 36347
17-03-17 19:57:04.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.338 -07 000000480 INF: FPGA: Recv ZSGSRD 36357
17-03-17 19:57:04.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:04.358 -07 000000626 INF: FPGA: Recv ZSGSRD 36356
17-03-17 19:57:04.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:04.368 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:04.368 -07 000000480 INF: FPGA: Recv ZPIEZORD 32628
17-03-17 19:57:04.378 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.3 V.
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36356 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36356 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36346 (-172.9 uncal um), Max = 36363 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36356, posNoise = 7, negNoise = 10
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: After move to -0.173875, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: Settle wait time = 1441 ms, measure time = 115 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:57:04.378 -07 000000012 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:04.418 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:57:04.418 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:04.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:04.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:04.418 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:04.418 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:04.418 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:04.418 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:04.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:04.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:04.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:04.428 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:04.438 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:57:04.438 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:57:04.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:04.488 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:04.688 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:04.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:04.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:04.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:57:04.728 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:04.728 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:04.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 290 ms overall
17-03-17 19:57:04.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:57:04.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:04.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:04.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:57:04.828 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:04.828 -07 000000478 INF: Autofocus start
17-03-17 19:57:04.828 -07 000000478 INF: MeasureProfile start
17-03-17 19:57:04.828 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:04.838 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:04.838 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:04.838 -07 000000478 INF: MeasureProfile done
17-03-17 19:57:04.838 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:57:04.838 -07 000000478 INF: Autofocus finished
17-03-17 19:57:05.038 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.986717,
17-03-17 19:57:05.038 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:05.038 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:05.038 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173882008636996. ----------
17-03-17 19:57:05.038 -07 000000610 INF: Cycle	32	Tile	16	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:05.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36480, sync = True, waitForSettling = True)
17-03-17 19:57:05.048 -07 000000610 INF: Z Motor: Moving to -0.166995 mm, started at -0.173882 mm, distance = 6.89 um
17-03-17 19:57:05.068 -07 000000610 INF: FPGA: Xmit ZDACW 36480\n [Z Motor]
17-03-17 19:57:05.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:57:05.078 -07 000000610 INF: FPGA: 'ZDACW 36480' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:05.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:05.088 -07 000000476 INF: FPGA: Recv ZDACR 36480
17-03-17 19:57:05.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:05.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.248 -07 000000459 INF: FPGA: Recv ZSGSRD 35284
17-03-17 19:57:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.258 -07 000000475 INF: FPGA: Recv ZSGSRD 35286
17-03-17 19:57:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35283
17-03-17 19:57:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35289
17-03-17 19:57:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35291
17-03-17 19:57:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35288
17-03-17 19:57:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35285
17-03-17 19:57:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.318 -07 000000480 INF: FPGA: Recv ZSGSRD 35287
17-03-17 19:57:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.328 -07 000000482 INF: FPGA: Recv ZSGSRD 35288
17-03-17 19:57:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:05.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35290
17-03-17 19:57:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:05.348 -07 000000448 INF: FPGA: Recv ZPIEZORD 31200
17-03-17 19:57:05.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:05.358 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.0 V.
17-03-17 19:57:05.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35287 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:57:05.358 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35287, posNoise = 4, negNoise = 4
17-03-17 19:57:05.358 -07 000000610 INF: Z Motor: After move to -0.166995, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:05.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-17 19:57:05.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:05.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:05.358 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:05.358 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:05.358 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:05.358 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:05.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:05.358 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:05.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:05.358 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:05.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:05.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:05.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:05.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:05.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:57:05.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:05.368 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:57:05.368 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:05.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:05.368 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:05.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36657 150\n [Camera]
17-03-17 19:57:05.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:05.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:05.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:05.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:05.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:05.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:57:05.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:05.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:05.988 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:05.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:05.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:57:06.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36657 792
17-03-17 19:57:06.328 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:06.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:57:06.378 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:57:06.378 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:06.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:57:06.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:57:06.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:06.388 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:06.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:57:06.388 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:06.388 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:57:06.518 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:06.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:06.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:06.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:06.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:57:06.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:06.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:06.528 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:06.528 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:06.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:57:06.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:57:06.718 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:06.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36657 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 19:57:06.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:57:06.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167014525857454. ------
17-03-17 19:57:06.828 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:06.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:06.828 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:06.828 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17360 mm
17-03-17 19:57:06.828 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:06.838 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:06.838 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:57:06.838 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37922, sync = True, waitForSettling = False)
17-03-17 19:57:06.838 -07 000000626 INF: Z Motor: Moving to -0.173596 mm, started at -0.167015 mm, distance = -6.58 um
17-03-17 19:57:06.838 -07 000000626 INF: FPGA: Xmit ZDACW 37922\n [Z Motor]
17-03-17 19:57:06.838 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:57:06.838 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 19:57:06.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:57:06.848 -07 000000626 INF: FPGA: 'ZDACW 37922' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:06.848 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:06.858 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:06.858 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-17 19:57:06.868 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:06.868 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:57:06.868 -07 000000547 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:06.868 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:06.868 -07 000000547 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:57:06.868 -07 000000478 INF: FPGA: Recv ZDACR 37922
17-03-17 19:57:06.878 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:06.878 -07 000000626 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:57:06.878 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:06.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:57:06.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:57:06.918 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:06.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:57:06.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:57:06.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:06.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:06.928 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:57:06.928 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:57:06.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:57:07.048 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:07.048 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:57:07.258 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:57:07.258 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:57:07.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:07.288 -07 000000459 INF: FPGA: Recv YRDPOS 149863
17-03-17 19:57:07.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:07.298 -07 000000547 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:07.298 -07 000000547 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 19:57:07.298 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.168 mm/sec
17-03-17 19:57:08.248 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:08.248 -07 000000478 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:57:08.258 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:08.258 -07 000000547 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:08.278 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:08.278 -07 000000547 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:57:08.278 -07 000000547 INF: Y Motor: Moved to 73.1758 after 1438 ms (table move)
17-03-17 19:57:08.278 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173596 mm (DAC = 37922)
17-03-17 19:57:08.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.288 -07 000000541 INF: FPGA: Recv ZSGSRD 36315
17-03-17 19:57:08.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:08.288 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.288 -07 000000486 INF: FPGA: Recv ZSGSRD 36328
17-03-17 19:57:08.298 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.298 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.298 -07 000000551 INF: FPGA: Recv ZSGSRD 36317
17-03-17 19:57:08.308 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.308 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:57:08.318 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.318 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.318 -07 000000012 INF: FPGA: Recv ZSGSRD 36309
17-03-17 19:57:08.328 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36306
17-03-17 19:57:08.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.338 -07 000000486 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:57:08.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36314
17-03-17 19:57:08.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.358 -07 000000626 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:57:08.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:08.368 -07 000000547 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:57:08.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.378 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:08.378 -07 000000480 INF: FPGA: Recv ZPIEZORD 32547
17-03-17 19:57:08.388 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.3 V.
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36315 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36306 (-172.7 uncal um), Max = 36328 (-172.8 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36315, posNoise = 13, negNoise = 9
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: After move to -0.173596, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:57:08.388 -07 000000593 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:08.438 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:57:08.438 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:08.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:08.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:08.438 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:08.438 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:08.438 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:08.438 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:08.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:08.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:08.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:08.448 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:08.448 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:57:08.458 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:57:08.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:08.498 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:08.698 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:08.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:08.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:08.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:08.738 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:08.738 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:08.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:57:08.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:57:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:08.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:57:08.838 -07 000000541 INF: Autofocus start
17-03-17 19:57:08.838 -07 000000541 INF: MeasureProfile start
17-03-17 19:57:08.838 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:08.848 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:08.848 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:57:08.848 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:08.848 -07 000000541 INF: MeasureProfile done
17-03-17 19:57:08.848 -07 000000541 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:57:08.848 -07 000000541 INF: Autofocus finished
17-03-17 19:57:09.048 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:09.048 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:57:09.048 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173618615939184. ----------
17-03-17 19:57:09.058 -07 000000610 INF: Cycle	32	Tile	17	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:09.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36402, sync = True, waitForSettling = True)
17-03-17 19:57:09.058 -07 000000610 INF: Z Motor: Moving to -0.166638 mm, started at -0.173619 mm, distance = 6.98 um
17-03-17 19:57:09.058 -07 000000610 INF: FPGA: Xmit ZDACW 36402\n [Z Motor]
17-03-17 19:57:09.068 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:57:09.068 -07 000000610 INF: FPGA: 'ZDACW 36402' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:57:09.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:09.068 -07 000000608 INF: FPGA: Recv ZDACR 36402
17-03-17 19:57:09.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:57:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.238 -07 000000593 INF: FPGA: Recv ZSGSRD 35239
17-03-17 19:57:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.248 -07 000000547 INF: FPGA: Recv ZSGSRD 35231
17-03-17 19:57:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:57:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.268 -07 000000501 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:57:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:57:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.288 -07 000000415 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:57:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.298 -07 000000476 INF: FPGA: Recv ZSGSRD 35231
17-03-17 19:57:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35236
17-03-17 19:57:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:09.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:57:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:09.328 -07 000000551 INF: FPGA: Recv ZPIEZORD 31115
17-03-17 19:57:09.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:09.338 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.555 V. Piezo Error = -9.1 V.
17-03-17 19:57:09.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35232 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35231 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35223 (-165.7 uncal um), Max = 35239 (-165.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:57:09.338 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35232, posNoise = 7, negNoise = 9
17-03-17 19:57:09.338 -07 000000610 INF: Z Motor: After move to -0.166638, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:09.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 19:57:09.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:09.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:09.338 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:09.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:09.338 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:09.338 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:09.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:09.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:09.338 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:09.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:09.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:09.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:09.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:09.348 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:09.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:09.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:09.358 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:57:09.358 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:09.358 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:09.358 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:09.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36578 150\n [Camera]
17-03-17 19:57:09.558 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:09.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:09.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:09.968 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:09.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:09.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:09.968 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:09.968 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:09.968 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:09.978 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:09.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:10.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36578 792
17-03-17 19:57:10.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:10.358 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:57:10.358 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:57:10.358 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:10.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:57:10.358 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:57:10.358 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:10.368 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:10.368 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:10.368 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:57:10.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:57:10.408 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.012614,
17-03-17 19:57:10.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:10.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:10.508 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:10.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:10.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:10.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:10.508 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:10.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:57:10.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:10.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:57:10.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:10.698 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:10.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36578 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:57:10.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:57:10.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166661194189657. ------
17-03-17 19:57:10.818 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17306 mm
17-03-17 19:57:10.818 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:10.818 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:10.828 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:57:10.828 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37806, sync = True, waitForSettling = False)
17-03-17 19:57:10.828 -07 000000626 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 19:57:10.828 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:10.828 -07 000000415 INF: Z Motor: Moving to -0.173065 mm, started at -0.166661 mm, distance = -6.40 um
17-03-17 19:57:10.828 -07 000000415 INF: FPGA: Xmit ZDACW 37806\n [Z Motor]
17-03-17 19:57:10.828 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:57:10.828 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 19:57:10.838 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:10.838 -07 000000415 INF: FPGA: 'ZDACW 37806' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:10.848 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:10.848 -07 000000482 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:57:10.858 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:10.858 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:57:10.858 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:10.858 -07 000000626 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:10.858 -07 000000626 INF: Y Motor: Moving 1355 steps-35
17-03-17 19:57:10.858 -07 000000478 INF: FPGA: Recv ZDACR 37806
17-03-17 19:57:10.868 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:10.868 -07 000000415 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:57:10.868 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:10.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:57:10.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:57:10.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:10.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:57:10.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:57:10.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:10.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:10.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:57:10.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:10.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:57:11.038 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:11.038 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 19:57:11.248 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:57:11.248 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 19:57:11.268 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:11.278 -07 000000431 INF: FPGA: Recv YRDPOS 151567
17-03-17 19:57:11.278 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:57:11.278 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:11.278 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:57:11.278 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.171 mm/sec
17-03-17 19:57:11.738 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:12.228 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:12.228 -07 000000547 INF: FPGA: Recv YRDPOS 151567
17-03-17 19:57:12.238 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.238 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:12.248 -07 000000626 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:12.248 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:12.248 -07 000000626 INF: Y Motor: Moved to 74.0073 after 1426 ms (table move)
17-03-17 19:57:12.258 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173065 mm (DAC = 37806)
17-03-17 19:57:12.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36229
17-03-17 19:57:12.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:12.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36225
17-03-17 19:57:12.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36228
17-03-17 19:57:12.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36231
17-03-17 19:57:12.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36237
17-03-17 19:57:12.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36233
17-03-17 19:57:12.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36228
17-03-17 19:57:12.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36226
17-03-17 19:57:12.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36228
17-03-17 19:57:12.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:12.348 -07 000000480 INF: FPGA: Recv ZSGSRD 36230
17-03-17 19:57:12.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.358 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:12.358 -07 000000478 INF: FPGA: Recv ZPIEZORD 32447
17-03-17 19:57:12.368 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.4 V.
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36230 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36228 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36230, posNoise = 7, negNoise = 5
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: After move to -0.173065, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: Settle wait time = 1429 ms, measure time = 110 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:57:12.368 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:12.408 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:57:12.408 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:12.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:12.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:12.408 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:12.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:12.408 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:12.408 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:12.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:12.408 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:12.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:57:12.418 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:12.428 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:57:12.428 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:57:12.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:12.468 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:12.668 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:12.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:12.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:12.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:12.708 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:12.708 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:12.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:57:12.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:57:12.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:12.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:12.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:57:12.808 -07 000000502 INF: Autofocus start
17-03-17 19:57:12.808 -07 000000502 INF: MeasureProfile start
17-03-17 19:57:12.808 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:12.808 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:12.818 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:12.818 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:12.818 -07 000000502 INF: MeasureProfile done
17-03-17 19:57:12.818 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:57:12.818 -07 000000502 INF: Autofocus finished
17-03-17 19:57:13.018 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:13.018 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:13.018 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173072557907134. ----------
17-03-17 19:57:13.028 -07 000000610 INF: Cycle	32	Tile	18	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:13.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36339, sync = True, waitForSettling = True)
17-03-17 19:57:13.028 -07 000000610 INF: Z Motor: Moving to -0.166349 mm, started at -0.173073 mm, distance = 6.72 um
17-03-17 19:57:13.028 -07 000000610 INF: FPGA: Xmit ZDACW 36339\n [Z Motor]
17-03-17 19:57:13.028 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:57:13.038 -07 000000610 INF: FPGA: 'ZDACW 36339' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:13.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:13.038 -07 000000433 INF: FPGA: Recv ZDACR 36339
17-03-17 19:57:13.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35191
17-03-17 19:57:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35190
17-03-17 19:57:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.218 -07 000000476 INF: FPGA: Recv ZSGSRD 35185
17-03-17 19:57:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35187
17-03-17 19:57:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.238 -07 000000593 INF: FPGA: Recv ZSGSRD 35191
17-03-17 19:57:13.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.248 -07 000000486 INF: FPGA: Recv ZSGSRD 35191
17-03-17 19:57:13.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35179
17-03-17 19:57:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35183
17-03-17 19:57:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35183
17-03-17 19:57:13.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:13.288 -07 000000462 INF: FPGA: Recv ZSGSRD 35185
17-03-17 19:57:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:13.298 -07 000000448 INF: FPGA: Recv ZPIEZORD 31058
17-03-17 19:57:13.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:13.308 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.1 V.
17-03-17 19:57:13.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35186 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35186 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35179 (-165.5 uncal um), Max = 35191 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:13.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35186, posNoise = 5, negNoise = 7
17-03-17 19:57:13.308 -07 000000610 INF: Z Motor: After move to -0.166349, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:13.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:57:13.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:13.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:13.308 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:13.308 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:13.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:13.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:13.308 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:13.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:13.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:13.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:13.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:13.308 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:13.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:13.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:13.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:13.318 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:13.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:57:13.328 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:57:13.328 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:57:13.328 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:57:13.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36515 150\n [Camera]
17-03-17 19:57:13.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:13.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:13.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:13.938 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:13.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:13.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:13.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:13.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:13.948 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:13.948 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:13.948 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:14.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36515 792
17-03-17 19:57:14.278 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:14.328 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:57:14.328 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:57:14.328 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:14.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:57:14.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:57:14.328 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:14.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:14.328 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:14.328 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:57:14.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:57:14.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:14.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:14.488 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:14.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:14.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:14.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:57:14.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:14.488 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:14.488 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:14.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:57:14.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:57:14.668 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:14.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36515 150' command took 2 ms to send, 1327 ms to get response, and 1338 ms overall
17-03-17 19:57:14.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:57:14.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166365680431136. ------
17-03-17 19:57:14.678 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:14.678 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17278 mm
17-03-17 19:57:14.678 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:14.678 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:14.678 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37745, sync = True, waitForSettling = False)
17-03-17 19:57:14.678 -07 000000478 INF: Z Motor: Moving to -0.172786 mm, started at -0.166366 mm, distance = -6.42 um
17-03-17 19:57:14.678 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:57:14.678 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 19:57:14.688 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:14.688 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:14.688 -07 000000608 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:57:14.698 -07 000000478 INF: FPGA: Xmit ZDACW 37745\n [Z Motor]
17-03-17 19:57:14.698 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:57:14.698 -07 000000415 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:14.698 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:57:14.698 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:14.698 -07 000000415 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:57:14.708 -07 000000478 INF: FPGA: 'ZDACW 37745' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:57:14.708 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:14.718 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:14.728 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:14.728 -07 000000475 INF: FPGA: Recv ZDACR 37745
17-03-17 19:57:14.738 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:14.738 -07 000000478 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:57:14.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:57:14.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:57:14.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:14.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:57:14.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:57:14.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:14.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:14.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:14.888 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:57:14.898 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:57:14.908 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:14.908 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:57:15.088 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:57:15.088 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:57:15.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:15.138 -07 000000462 INF: FPGA: Recv YRDPOS 153255
17-03-17 19:57:15.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:57:15.148 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:15.148 -07 000000415 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 19:57:15.148 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 19:57:15.768 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.03576,
17-03-17 19:57:16.098 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:16.098 -07 000000448 INF: FPGA: Recv YRDPOS 153255
17-03-17 19:57:16.108 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:16.108 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:16.118 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:16.118 -07 000000415 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:16.118 -07 000000415 INF: Y Motor: Moved to 74.8315 after 1437 ms (table move)
17-03-17 19:57:16.128 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172786 mm (DAC = 37745)
17-03-17 19:57:16.128 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.128 -07 000000547 INF: FPGA: Recv ZSGSRD 36189
17-03-17 19:57:16.138 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:16.138 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36181
17-03-17 19:57:16.148 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.148 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.148 -07 000000478 INF: FPGA: Recv ZSGSRD 36194
17-03-17 19:57:16.158 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.158 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:57:16.168 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.168 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:57:16.178 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.178 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.178 -07 000000541 INF: FPGA: Recv ZSGSRD 36190
17-03-17 19:57:16.188 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:57:16.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.198 -07 000000482 INF: FPGA: Recv ZSGSRD 36182
17-03-17 19:57:16.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.208 -07 000000448 INF: FPGA: Recv ZSGSRD 36185
17-03-17 19:57:16.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:16.218 -07 000000475 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:57:16.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.228 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:16.228 -07 000000626 INF: FPGA: Recv ZPIEZORD 32385
17-03-17 19:57:16.238 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.4 V.
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36187 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36181 (-171.9 uncal um), Max = 36194 (-172.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 6, negNoise = 7
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: After move to -0.172786, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:57:16.238 -07 000000433 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:16.288 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:57:16.288 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:16.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:16.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:16.288 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:16.288 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:16.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:16.288 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:16.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:16.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:16.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:16.298 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:16.308 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:57:16.308 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:57:16.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:16.358 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:16.558 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:16.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:16.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:16.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:57:16.598 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:16.598 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:16.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 19:57:16.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:57:16.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:16.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:16.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:57:16.698 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:16.698 -07 000000541 INF: Autofocus start
17-03-17 19:57:16.698 -07 000000541 INF: MeasureProfile start
17-03-17 19:57:16.698 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:16.708 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:16.708 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:16.708 -07 000000541 INF: MeasureProfile done
17-03-17 19:57:16.708 -07 000000541 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:57:16.708 -07 000000541 INF: Autofocus finished
17-03-17 19:57:16.738 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:16.908 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:16.908 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 19:57:16.918 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.17280274099718. ----------
17-03-17 19:57:16.918 -07 000000610 INF: Cycle	32	Tile	19	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:16.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36242, sync = True, waitForSettling = True)
17-03-17 19:57:16.918 -07 000000610 INF: Z Motor: Moving to -0.165905 mm, started at -0.172803 mm, distance = 6.90 um
17-03-17 19:57:16.918 -07 000000610 INF: FPGA: Xmit ZDACW 36242\n [Z Motor]
17-03-17 19:57:16.918 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:57:16.928 -07 000000610 INF: FPGA: 'ZDACW 36242' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:16.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:16.928 -07 000000431 INF: FPGA: Recv ZDACR 36242
17-03-17 19:57:16.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:16.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:17.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35113
17-03-17 19:57:17.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:17.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.098 -07 000000448 INF: FPGA: Recv ZSGSRD 35115
17-03-17 19:57:17.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.108 -07 000000475 INF: FPGA: Recv ZSGSRD 35120
17-03-17 19:57:17.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.118 -07 000000482 INF: FPGA: Recv ZSGSRD 35115
17-03-17 19:57:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35118
17-03-17 19:57:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.138 -07 000000501 INF: FPGA: Recv ZSGSRD 35115
17-03-17 19:57:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.148 -07 000000433 INF: FPGA: Recv ZSGSRD 35117
17-03-17 19:57:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.158 -07 000000608 INF: FPGA: Recv ZSGSRD 35118
17-03-17 19:57:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35111
17-03-17 19:57:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:17.178 -07 000000547 INF: FPGA: Recv ZSGSRD 35117
17-03-17 19:57:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:17.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:17.188 -07 000000502 INF: FPGA: Recv ZPIEZORD 30972
17-03-17 19:57:17.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:17.198 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.1 V.
17-03-17 19:57:17.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35116 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35116 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35111 (-165.0 uncal um), Max = 35120 (-165.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:57:17.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35116, posNoise = 4, negNoise = 5
17-03-17 19:57:17.198 -07 000000610 INF: Z Motor: After move to -0.165905, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:17.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:57:17.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:17.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:17.198 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:17.198 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:17.198 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:17.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:17.198 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:17.198 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:17.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:17.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:17.198 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:17.198 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:17.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:17.198 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:17.198 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:57:17.208 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:17.208 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:57:17.208 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:17.218 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:57:17.218 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:57:17.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 36418 150\n [Camera]
17-03-17 19:57:17.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:17.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:17.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:17.818 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:17.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:17.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:57:17.828 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:17.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:17.828 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:17.828 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:17.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:57:18.018 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36418 792
17-03-17 19:57:18.168 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:18.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:57:18.198 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:57:18.198 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:18.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:57:18.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:57:18.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:18.208 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:18.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:57:18.208 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:18.218 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:57:18.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:18.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:18.358 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:18.358 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:18.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:57:18.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:18.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:18.368 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:18.368 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:18.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:57:18.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:18.548 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:18.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 36418 150' command took 4 ms to send, 1329 ms to get response, and 1337 ms overall
17-03-17 19:57:18.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:57:18.758 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:57:18.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:18.758 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:57:18.758 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:57:18.758 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:18.758 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:18.768 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:57:18.768 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:57:18.768 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:57:18.768 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:57:18.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:57:18.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:57:18.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:57:18.858 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:57:18.858 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:57:18.858 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 19:57:18.868 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:18.868 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:57:19.368 -07 000000012 INF: FPGA: Recv EMIN
17-03-17 19:57:19.368 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:57:19.368 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:57:19.368 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 19:57:19.378 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:19.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:19.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165915985581213. ------
17-03-17 19:57:19.378 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:19.378 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14036 mm
17-03-17 19:57:19.378 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:19.388 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:19.388 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30662, sync = True, waitForSettling = False)
17-03-17 19:57:19.388 -07 000000431 INF: Z Motor: Moving to -0.140362 mm, started at -0.165916 mm, distance = 25.55 um
17-03-17 19:57:19.388 -07 000000431 INF: FPGA: Xmit ZDACW 30662\n [Z Motor]
17-03-17 19:57:19.388 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:57:19.388 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:57:19.388 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 19:57:19.388 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:57:19.398 -07 000000431 INF: FPGA: 'ZDACW 30662' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:19.398 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:19.398 -07 000000433 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:57:19.408 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:19.408 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:57:19.408 -07 000000480 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:19.408 -07 000000480 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:57:19.408 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:57:19.418 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:19.418 -07 000000475 INF: FPGA: Recv ZDACR 30662
17-03-17 19:57:19.428 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:57:19.428 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:19.428 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:57:19.608 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:19.608 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:57:21.048 -07 000000502 INF: FPGA: Recv YMVTO 122702 23903
17-03-17 19:57:21.048 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 19:57:21.048 -07 000000480 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 19:57:21.048 -07 000000480 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:57:21.048 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 19:57:21.128 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.015368,
17-03-17 19:57:21.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:21.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:23.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:23.898 -07 000000626 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:57:23.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:23.908 -07 000000480 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:23.928 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:23.928 -07 000000480 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:57:23.928 -07 000000480 INF: Y Motor: Moved to 59.9111 after 4546 ms
17-03-17 19:57:23.938 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140362 mm (DAC = 30662)
17-03-17 19:57:23.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.938 -07 000000459 INF: FPGA: Recv ZSGSRD 31140
17-03-17 19:57:23.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:23.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.948 -07 000000476 INF: FPGA: Recv ZSGSRD 31141
17-03-17 19:57:23.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:23.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.958 -07 000000462 INF: FPGA: Recv ZSGSRD 31140
17-03-17 19:57:23.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:23.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.968 -07 000000448 INF: FPGA: Recv ZSGSRD 31136
17-03-17 19:57:23.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:23.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.978 -07 000000431 INF: FPGA: Recv ZSGSRD 31135
17-03-17 19:57:23.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:23.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.988 -07 000000541 INF: FPGA: Recv ZSGSRD 31139
17-03-17 19:57:23.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:23.998 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:23.998 -07 000000480 INF: FPGA: Recv ZSGSRD 31135
17-03-17 19:57:24.008 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.008 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:24.008 -07 000000501 INF: FPGA: Recv ZSGSRD 31138
17-03-17 19:57:24.018 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.018 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:24.018 -07 000000448 INF: FPGA: Recv ZSGSRD 31138
17-03-17 19:57:24.028 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:24.028 -07 000000415 INF: FPGA: Recv ZSGSRD 31138
17-03-17 19:57:24.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.038 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:24.038 -07 000000486 INF: FPGA: Recv ZPIEZORD 26824
17-03-17 19:57:24.048 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.5 V.
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31138 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31138 (-139.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31135 (-139.5 uncal um), Max = 31141 (-139.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31138, posNoise = 3, negNoise = 3
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: After move to -0.140362, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: Settle wait time = 4550 ms, measure time = 109 ms (allowed 150 ms), total time = 4659 ms
17-03-17 19:57:24.048 -07 000000593 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:24.098 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 19:57:24.098 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:24.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:24.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:24.098 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:24.098 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:24.098 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:24.098 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:24.098 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:57:24.098 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:57:24.128 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 19:57:24.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:24.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:24.128 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:24.138 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:57:24.138 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 19:57:24.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:24.188 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:24.388 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:24.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:24.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:24.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:24.428 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:24.428 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:24.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 19:57:24.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:57:24.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:24.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:24.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:57:24.638 -07 000000482 INF: Image SNR check: start
17-03-17 19:57:24.638 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:24.638 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:24.648 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:24.648 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:24.658 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=63.02]
17-03-17 19:57:24.658 -07 000000482 INF: Autofocus start
17-03-17 19:57:24.658 -07 000000482 INF: MeasureProfile start
17-03-17 19:57:24.668 -07 000000482 INF: MeasureProfile done
17-03-17 19:57:24.668 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:57:24.668 -07 000000482 INF: Autofocus finished
17-03-17 19:57:24.848 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:24.848 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 19:57:24.858 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140360469681288. ----------
17-03-17 19:57:24.858 -07 000000610 INF: Cycle	32	Tile	1	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:24.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29169, sync = True, waitForSettling = True)
17-03-17 19:57:24.858 -07 000000610 INF: Z Motor: Moving to -0.133527 mm, started at -0.140360 mm, distance = 6.83 um
17-03-17 19:57:24.858 -07 000000610 INF: FPGA: Xmit ZDACW 29169\n [Z Motor]
17-03-17 19:57:24.858 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:57:24.868 -07 000000610 INF: FPGA: 'ZDACW 29169' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:24.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:24.868 -07 000000501 INF: FPGA: Recv ZDACR 29169
17-03-17 19:57:24.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:24.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30069
17-03-17 19:57:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.038 -07 000000608 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:57:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.048 -07 000000480 INF: FPGA: Recv ZSGSRD 30074
17-03-17 19:57:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.058 -07 000000482 INF: FPGA: Recv ZSGSRD 30072
17-03-17 19:57:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.068 -07 000000501 INF: FPGA: Recv ZSGSRD 30078
17-03-17 19:57:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.078 -07 000000476 INF: FPGA: Recv ZSGSRD 30078
17-03-17 19:57:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.088 -07 000000608 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:57:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.098 -07 000000475 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:57:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.108 -07 000000431 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:57:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:25.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:57:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:25.128 -07 000000478 INF: FPGA: Recv ZPIEZORD 25682
17-03-17 19:57:25.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:25.138 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -9.6 V.
17-03-17 19:57:25.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30075 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30076 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30066 (-132.7 uncal um), Max = 30079 (-132.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:57:25.138 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30075, posNoise = 4, negNoise = 9
17-03-17 19:57:25.138 -07 000000610 INF: Z Motor: After move to -0.133527, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:25.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:57:25.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:25.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:25.138 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:25.138 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:25.138 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:25.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:25.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:25.138 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:25.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:25.138 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:57:25.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:25.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:25.148 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:25.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:25.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:57:25.148 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:57:25.158 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 19:57:25.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:25.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:57:25.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:25.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:57:25.168 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:57:25.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29346 150\n [Camera]
17-03-17 19:57:25.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:25.778 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:25.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:25.788 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:25.788 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:25.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:25.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:25.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:25.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:25.798 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:25.798 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:25.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29346 792
17-03-17 19:57:26.118 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:26.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:57:26.168 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:57:26.168 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:26.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:57:26.168 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:57:26.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:26.168 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:26.168 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:26.168 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:57:26.178 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:57:26.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:26.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:26.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:26.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:26.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:26.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:26.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:26.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:57:26.328 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:26.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:57:26.488 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.979922,
17-03-17 19:57:26.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:26.508 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:26.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29346 150' command took 2 ms to send, 1328 ms to get response, and 1337 ms overall
17-03-17 19:57:26.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:26.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133531532174596. ------
17-03-17 19:57:26.628 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13999 mm
17-03-17 19:57:26.628 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:26.628 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:26.638 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:57:26.638 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:26.638 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:57:26.638 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30581, sync = True, waitForSettling = False)
17-03-17 19:57:26.638 -07 000000476 INF: Z Motor: Moving to -0.139991 mm, started at -0.133532 mm, distance = -6.46 um
17-03-17 19:57:26.638 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:26.638 -07 000000448 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 19:57:26.648 -07 000000476 INF: FPGA: Xmit ZDACW 30581\n [Z Motor]
17-03-17 19:57:26.648 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:57:26.658 -07 000000476 INF: FPGA: 'ZDACW 30581' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:57:26.658 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:26.658 -07 000000486 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:57:26.668 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:57:26.668 -07 000000448 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:26.668 -07 000000448 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:26.668 -07 000000448 INF: Y Motor: Moving 1330 steps1
17-03-17 19:57:26.668 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:26.668 -07 000000431 INF: FPGA: Recv ZDACR 30581
17-03-17 19:57:26.678 -07 000000476 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:26.678 -07 000000476 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:57:26.678 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:26.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:57:26.718 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:57:26.718 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:26.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:57:26.718 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:57:26.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:26.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:26.728 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:26.728 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:57:26.728 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:57:26.738 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:26.838 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:26.838 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:57:27.048 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:57:27.048 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:57:27.078 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:27.088 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:57:27.088 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:57:27.088 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:27.088 -07 000000448 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:57:27.088 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.831 mm, average velocity = 2.143 mm/sec
17-03-17 19:57:28.038 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:28.038 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:57:28.048 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:28.048 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:28.068 -07 000000448 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:28.068 -07 000000448 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:28.068 -07 000000448 INF: Y Motor: Moved to 60.7329 after 1430 ms (table move)
17-03-17 19:57:28.068 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139991 mm (DAC = 30581)
17-03-17 19:57:28.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.068 -07 000000459 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:57:28.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:28.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.078 -07 000000431 INF: FPGA: Recv ZSGSRD 31079
17-03-17 19:57:28.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.088 -07 000000433 INF: FPGA: Recv ZSGSRD 31084
17-03-17 19:57:28.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.098 -07 000000415 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:57:28.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.108 -07 000000462 INF: FPGA: Recv ZSGSRD 31083
17-03-17 19:57:28.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.118 -07 000000012 INF: FPGA: Recv ZSGSRD 31085
17-03-17 19:57:28.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.128 -07 000000486 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:57:28.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.138 -07 000000626 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:57:28.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.148 -07 000000502 INF: FPGA: Recv ZSGSRD 31084
17-03-17 19:57:28.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:28.158 -07 000000475 INF: FPGA: Recv ZSGSRD 31079
17-03-17 19:57:28.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.168 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:28.168 -07 000000476 INF: FPGA: Recv ZPIEZORD 27021
17-03-17 19:57:28.178 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.666 V. Piezo Error = -8.9 V.
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31082 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31082 (-139.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31076 (-139.2 uncal um), Max = 31088 (-139.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31082, posNoise = 6, negNoise = 6
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: After move to -0.139991, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:57:28.178 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:28.228 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:57:28.228 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:28.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:28.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:28.228 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:28.228 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:28.228 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:28.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:28.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:28.228 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:28.238 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:28.238 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:28.248 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:57:28.248 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:57:28.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:28.298 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:28.498 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:28.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:28.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:28.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:28.538 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:28.538 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:28.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:57:28.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:57:28.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:28.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:28.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:57:28.638 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:28.638 -07 000000462 INF: Autofocus start
17-03-17 19:57:28.638 -07 000000462 INF: MeasureProfile start
17-03-17 19:57:28.638 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:28.648 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:28.648 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:28.648 -07 000000462 INF: MeasureProfile done
17-03-17 19:57:28.648 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:57:28.648 -07 000000462 INF: Autofocus finished
17-03-17 19:57:28.848 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:28.848 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 19:57:28.848 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140000713801349. ----------
17-03-17 19:57:28.858 -07 000000610 INF: Cycle	32	Tile	2	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:28.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29106, sync = True, waitForSettling = True)
17-03-17 19:57:28.858 -07 000000610 INF: Z Motor: Moving to -0.133239 mm, started at -0.140001 mm, distance = 6.76 um
17-03-17 19:57:28.858 -07 000000610 INF: FPGA: Xmit ZDACW 29106\n [Z Motor]
17-03-17 19:57:28.858 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 19:57:28.868 -07 000000610 INF: FPGA: 'ZDACW 29106' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:28.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:28.868 -07 000000593 INF: FPGA: Recv ZDACR 29106
17-03-17 19:57:28.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:28.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:29.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.028 -07 000000482 INF: FPGA: Recv ZSGSRD 30041
17-03-17 19:57:29.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:29.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:57:29.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.048 -07 000000480 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:57:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.058 -07 000000448 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:57:29.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.068 -07 000000501 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:57:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30035
17-03-17 19:57:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:57:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.098 -07 000000593 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:57:29.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30036
17-03-17 19:57:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:29.118 -07 000000502 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:57:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:29.128 -07 000000551 INF: FPGA: Recv ZPIEZORD 25662
17-03-17 19:57:29.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:29.138 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.6 V.
17-03-17 19:57:29.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30031 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30022 (-132.4 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:57:29.138 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30031, posNoise = 10, negNoise = 9
17-03-17 19:57:29.138 -07 000000610 INF: Z Motor: After move to -0.133239, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:29.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:57:29.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:29.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:29.138 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:29.138 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:29.138 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:29.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:29.138 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:29.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:29.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:29.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:29.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:29.138 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:29.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:29.138 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:29.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:29.148 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:29.158 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:57:29.158 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:57:29.158 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:57:29.158 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:57:29.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29282 150\n [Camera]
17-03-17 19:57:29.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:29.768 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:29.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:29.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:29.778 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:29.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:29.778 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:29.778 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:29.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:29.778 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:29.778 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:29.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29282 792
17-03-17 19:57:30.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:30.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:57:30.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:57:30.158 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:30.168 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:30.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:57:30.168 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:57:30.168 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:30.168 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:30.168 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:57:30.168 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:57:30.308 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:30.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:30.308 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:30.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:30.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:30.308 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:30.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:57:30.318 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:30.318 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:30.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:57:30.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:30.498 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:30.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29282 150' command took 2 ms to send, 1328 ms to get response, and 1337 ms overall
17-03-17 19:57:30.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:30.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133248866840358. ------
17-03-17 19:57:30.508 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:30.508 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.14000 mm
17-03-17 19:57:30.508 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:30.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:57:30.508 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:57:30.508 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:30.508 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30584, sync = True, waitForSettling = False)
17-03-17 19:57:30.508 -07 000000478 INF: Z Motor: Moving to -0.140005 mm, started at -0.133249 mm, distance = -6.76 um
17-03-17 19:57:30.518 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:30.518 -07 000000478 INF: FPGA: Xmit ZDACW 30584\n [Z Motor]
17-03-17 19:57:30.518 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:57:30.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:30.528 -07 000000478 INF: FPGA: 'ZDACW 30584' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:30.528 -07 000000482 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:57:30.538 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:30.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:57:30.538 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:30.538 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:30.538 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:57:30.548 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:30.548 -07 000000462 INF: FPGA: Recv ZDACR 30584
17-03-17 19:57:30.558 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:30.558 -07 000000478 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:57:30.558 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:30.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:57:30.718 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:57:30.718 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:30.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:57:30.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:57:30.718 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:30.718 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:30.718 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:57:30.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:30.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:57:30.738 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:30.738 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:57:30.928 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:57:30.928 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:57:30.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:30.968 -07 000000480 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:57:30.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:30.978 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:30.978 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:57:30.978 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 19:57:31.738 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:31.928 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:31.928 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:57:31.938 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:31.938 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:31.948 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.997626,
17-03-17 19:57:31.958 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:31.958 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:31.958 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-17 19:57:31.958 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140005 mm (DAC = 30584)
17-03-17 19:57:31.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:31.978 -07 000000448 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:57:31.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:57:31.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:31.988 -07 000000626 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:57:31.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:32.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.008 -07 000000551 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:57:32.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:32.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.018 -07 000000541 INF: FPGA: Recv ZSGSRD 31080
17-03-17 19:57:32.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.028 -07 000000012 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:57:32.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.038 -07 000000459 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:57:32.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.048 -07 000000433 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:57:32.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.058 -07 000000462 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:57:32.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.068 -07 000000593 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:57:32.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.078 -07 000000486 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:57:32.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.088 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:32.088 -07 000000547 INF: FPGA: Recv ZPIEZORD 27055
17-03-17 19:57:32.098 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.9 V.
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31084 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31084 (-139.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31077 (-139.2 uncal um), Max = 31088 (-139.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31084, posNoise = 4, negNoise = 7
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: After move to -0.140005, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: Settle wait time = 1448 ms, measure time = 133 ms (allowed 150 ms), total time = 1581 ms
17-03-17 19:57:32.098 -07 000000431 INF: Z Motor: Waiting extra 17 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:32.118 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:57:32.118 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:32.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:32.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:32.118 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:32.118 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:32.118 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:32.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:32.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:32.118 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:32.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:32.128 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:32.138 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:57:32.138 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:57:32.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:32.188 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:32.378 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:32.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:32.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:32.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:57:32.418 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:32.418 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:32.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:57:32.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:57:32.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:32.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:57:32.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:57:32.528 -07 000000551 INF: Autofocus start
17-03-17 19:57:32.528 -07 000000551 INF: MeasureProfile start
17-03-17 19:57:32.528 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:32.528 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:32.538 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:32.538 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:32.538 -07 000000551 INF: MeasureProfile done
17-03-17 19:57:32.538 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:57:32.538 -07 000000551 INF: Autofocus finished
17-03-17 19:57:32.738 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:32.738 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:32.738 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.140013562225633. ----------
17-03-17 19:57:32.738 -07 000000610 INF: Cycle	32	Tile	3	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:32.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29091, sync = True, waitForSettling = True)
17-03-17 19:57:32.748 -07 000000610 INF: Z Motor: Moving to -0.133170 mm, started at -0.140014 mm, distance = 6.84 um
17-03-17 19:57:32.748 -07 000000610 INF: FPGA: Xmit ZDACW 29091\n [Z Motor]
17-03-17 19:57:32.748 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:57:32.758 -07 000000610 INF: FPGA: 'ZDACW 29091' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:32.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:32.758 -07 000000501 INF: FPGA: Recv ZDACR 29091
17-03-17 19:57:32.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.918 -07 000000502 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:57:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.928 -07 000000547 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:57:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.938 -07 000000502 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:57:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:57:32.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.958 -07 000000541 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:57:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.968 -07 000000626 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:57:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:57:32.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.988 -07 000000475 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:57:32.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:32.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:32.998 -07 000000547 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:57:33.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:33.008 -07 000000541 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:57:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:33.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:33.018 -07 000000626 INF: FPGA: Recv ZPIEZORD 25681
17-03-17 19:57:33.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:33.028 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.5 V.
17-03-17 19:57:33.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30020 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30020 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30016 (-132.4 uncal um), Max = 30023 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:57:33.028 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30020, posNoise = 3, negNoise = 4
17-03-17 19:57:33.028 -07 000000610 INF: Z Motor: After move to -0.133170, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:33.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:57:33.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:33.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:33.028 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:33.028 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:33.028 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:33.028 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:33.028 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:33.028 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:33.028 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:33.028 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:33.028 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:33.028 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:33.038 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:33.038 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:33.038 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:33.038 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:33.038 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:57:33.038 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:33.048 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:33.048 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:57:33.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29268 150\n [Camera]
17-03-17 19:57:33.248 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:33.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:33.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:33.658 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:33.658 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:33.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:57:33.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:33.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:33.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:33.658 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:33.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:57:33.848 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29268 792
17-03-17 19:57:33.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:34.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:57:34.038 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:57:34.038 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:34.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:57:34.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:57:34.038 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:34.038 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:34.038 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:34.038 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:57:34.048 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:57:34.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:34.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:34.198 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:34.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:34.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:57:34.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:34.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:34.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:34.198 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:34.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:57:34.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:57:34.388 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:34.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29268 150' command took 2 ms to send, 1334 ms to get response, and 1340 ms overall
17-03-17 19:57:34.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:34.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133178200506799. ------
17-03-17 19:57:34.398 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:34.398 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13930 mm
17-03-17 19:57:34.398 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:34.398 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:34.398 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30429, sync = True, waitForSettling = False)
17-03-17 19:57:34.398 -07 000000480 INF: Z Motor: Moving to -0.139295 mm, started at -0.133178 mm, distance = -6.12 um
17-03-17 19:57:34.398 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:57:34.398 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:57:34.408 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:34.408 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:34.408 -07 000000478 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:57:34.418 -07 000000480 INF: FPGA: Xmit ZDACW 30429\n [Z Motor]
17-03-17 19:57:34.418 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:57:34.418 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:34.418 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:57:34.418 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:34.418 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:57:34.428 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:34.428 -07 000000480 INF: FPGA: 'ZDACW 30429' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:57:34.438 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:34.448 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:34.448 -07 000000501 INF: FPGA: Recv ZDACR 30429
17-03-17 19:57:34.458 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:34.458 -07 000000480 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:57:34.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:57:34.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:57:34.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:34.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:57:34.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:57:34.588 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:34.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:34.598 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:57:34.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:57:34.598 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:57:34.628 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:34.628 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:57:34.808 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:57:34.808 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:57:34.848 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:34.848 -07 000000482 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:57:34.858 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:34.858 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:34.858 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:57:34.858 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-17 19:57:35.808 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:35.808 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:57:35.818 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:35.818 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:35.838 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:35.838 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:35.838 -07 000000502 INF: Y Motor: Moved to 62.3955 after 1435 ms (table move)
17-03-17 19:57:35.838 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139295 mm (DAC = 30429)
17-03-17 19:57:35.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.838 -07 000000608 INF: FPGA: Recv ZSGSRD 30980
17-03-17 19:57:35.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:35.848 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.848 -07 000000480 INF: FPGA: Recv ZSGSRD 30970
17-03-17 19:57:35.858 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.858 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.858 -07 000000593 INF: FPGA: Recv ZSGSRD 30983
17-03-17 19:57:35.868 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.868 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.868 -07 000000475 INF: FPGA: Recv ZSGSRD 30975
17-03-17 19:57:35.878 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.878 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.878 -07 000000448 INF: FPGA: Recv ZSGSRD 30971
17-03-17 19:57:35.888 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.888 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.888 -07 000000608 INF: FPGA: Recv ZSGSRD 30973
17-03-17 19:57:35.898 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.898 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.898 -07 000000541 INF: FPGA: Recv ZSGSRD 30967
17-03-17 19:57:35.908 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.908 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.908 -07 000000482 INF: FPGA: Recv ZSGSRD 30971
17-03-17 19:57:35.918 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.918 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.918 -07 000000551 INF: FPGA: Recv ZSGSRD 30969
17-03-17 19:57:35.928 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.928 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:35.928 -07 000000502 INF: FPGA: Recv ZSGSRD 30976
17-03-17 19:57:35.938 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.938 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:35.938 -07 000000626 INF: FPGA: Recv ZPIEZORD 26957
17-03-17 19:57:35.948 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.8 V.
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30974 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30983 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30974, posNoise = 9, negNoise = 7
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: After move to -0.139295, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:57:35.948 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:35.998 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:57:35.998 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:35.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:35.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:35.998 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:35.998 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:35.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:35.998 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:35.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:35.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:36.008 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:36.008 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:36.018 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:57:36.018 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:57:36.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:36.058 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:36.258 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:36.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:36.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:36.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:36.298 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:36.298 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:36.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:57:36.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:57:36.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:36.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:36.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:57:36.498 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:36.498 -07 000000475 INF: Autofocus start
17-03-17 19:57:36.498 -07 000000475 INF: MeasureProfile start
17-03-17 19:57:36.498 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:36.508 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:36.508 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:36.508 -07 000000475 INF: MeasureProfile done
17-03-17 19:57:36.508 -07 000000475 INF: X=-9  Z correction [um]=-0.04721335
17-03-17 19:57:36.508 -07 000000475 INF: Autofocus finished
17-03-17 19:57:36.708 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:36.708 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:36.718 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139306898890039. ----------
17-03-17 19:57:36.718 -07 000000610 INF: Cycle	32	Tile	4	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:36.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28931, sync = True, waitForSettling = True)
17-03-17 19:57:36.718 -07 000000610 INF: Z Motor: Moving to -0.132438 mm, started at -0.139307 mm, distance = 6.87 um
17-03-17 19:57:36.718 -07 000000610 INF: FPGA: Xmit ZDACW 28931\n [Z Motor]
17-03-17 19:57:36.718 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:57:36.728 -07 000000610 INF: FPGA: 'ZDACW 28931' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:36.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:36.728 -07 000000541 INF: FPGA: Recv ZDACR 28931
17-03-17 19:57:36.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:36.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29903
17-03-17 19:57:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.898 -07 000000478 INF: FPGA: Recv ZSGSRD 29906
17-03-17 19:57:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:57:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29900
17-03-17 19:57:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29912
17-03-17 19:57:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:57:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.948 -07 000000486 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:57:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29911
17-03-17 19:57:36.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.968 -07 000000626 INF: FPGA: Recv ZSGSRD 29908
17-03-17 19:57:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:36.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:57:36.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:36.988 -07 000000459 INF: FPGA: Recv ZPIEZORD 25574
17-03-17 19:57:36.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:36.998 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -9.5 V.
17-03-17 19:57:36.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29906 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:57:36.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29906, posNoise = 6, negNoise = 6
17-03-17 19:57:36.998 -07 000000610 INF: Z Motor: After move to -0.132438, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:36.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:57:36.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:36.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:36.998 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:36.998 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:36.998 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:36.998 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:36.998 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:36.998 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:36.998 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:36.998 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:36.998 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:57:36.998 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:37.008 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:37.008 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:37.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:37.008 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:37.018 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:37.018 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:57:37.018 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:57:37.018 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:57:37.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29108 150\n [Camera]
17-03-17 19:57:37.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:37.328 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.974486,
17-03-17 19:57:37.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:37.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:37.638 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:37.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:37.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:37.638 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:37.638 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:37.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:37.638 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:37.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:37.828 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29108 792
17-03-17 19:57:37.978 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:38.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:57:38.018 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:57:38.018 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:38.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:57:38.028 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:57:38.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:38.028 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:38.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:57:38.028 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:38.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:57:38.168 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:38.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:38.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:38.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:38.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:38.178 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:38.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:38.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:57:38.178 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:38.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:57:38.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:38.358 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:38.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29108 150' command took 6 ms to send, 1329 ms to get response, and 1338 ms overall
17-03-17 19:57:38.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:38.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132445840322638. ------
17-03-17 19:57:38.488 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:38.488 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13897 mm
17-03-17 19:57:38.488 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:38.488 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30358, sync = True, waitForSettling = False)
17-03-17 19:57:38.488 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:57:38.488 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:57:38.488 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:38.488 -07 000000415 INF: Z Motor: Moving to -0.138970 mm, started at -0.132446 mm, distance = -6.52 um
17-03-17 19:57:38.498 -07 000000415 INF: FPGA: Xmit ZDACW 30358\n [Z Motor]
17-03-17 19:57:38.498 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:38.498 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:57:38.508 -07 000000415 INF: FPGA: 'ZDACW 30358' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:57:38.508 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:38.508 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:57:38.518 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:38.518 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:57:38.518 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:38.518 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:38.518 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:57:38.528 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:38.528 -07 000000502 INF: FPGA: Recv ZDACR 30358
17-03-17 19:57:38.538 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:38.538 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:38.538 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:57:38.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:57:38.568 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:57:38.568 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:38.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:57:38.568 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:57:38.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:38.568 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:38.568 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:57:38.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:38.578 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:57:38.718 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:38.718 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:57:38.908 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:57:38.908 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:57:38.948 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:38.948 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:57:38.958 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:38.958 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:38.958 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:57:38.958 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 19:57:39.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:39.908 -07 000000478 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:57:39.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:39.918 -07 000000012 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:39.938 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:39.938 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:57:39.938 -07 000000012 INF: Y Motor: Moved to 63.2246 after 1445 ms (table move)
17-03-17 19:57:39.938 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138970 mm (DAC = 30358)
17-03-17 19:57:39.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.938 -07 000000415 INF: FPGA: Recv ZSGSRD 30919
17-03-17 19:57:39.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:39.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.948 -07 000000486 INF: FPGA: Recv ZSGSRD 30920
17-03-17 19:57:39.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:39.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.958 -07 000000475 INF: FPGA: Recv ZSGSRD 30917
17-03-17 19:57:39.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:39.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30918
17-03-17 19:57:39.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:39.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30923
17-03-17 19:57:39.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:39.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.988 -07 000000626 INF: FPGA: Recv ZSGSRD 30922
17-03-17 19:57:39.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:39.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:39.998 -07 000000541 INF: FPGA: Recv ZSGSRD 30928
17-03-17 19:57:40.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.008 -07 000000448 INF: FPGA: Recv ZSGSRD 30912
17-03-17 19:57:40.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.018 -07 000000415 INF: FPGA: Recv ZSGSRD 30912
17-03-17 19:57:40.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30922
17-03-17 19:57:40.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.038 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:40.038 -07 000000478 INF: FPGA: Recv ZPIEZORD 26857
17-03-17 19:57:40.048 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.9 V.
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30919 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30912 (-138.1 uncal um), Max = 30928 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30919, posNoise = 9, negNoise = 7
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: After move to -0.138970, error = 0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:57:40.048 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:40.098 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:57:40.098 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:40.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:40.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:40.098 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:40.098 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:40.098 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:40.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:40.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:40.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:40.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:40.108 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:40.108 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:57:40.108 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:57:40.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:40.158 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:40.358 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:40.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:40.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:40.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:40.398 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:40.398 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:40.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:57:40.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:57:40.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:40.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:40.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:57:40.498 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:40.498 -07 000000459 INF: Autofocus start
17-03-17 19:57:40.498 -07 000000459 INF: MeasureProfile start
17-03-17 19:57:40.498 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:40.508 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:40.508 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:40.508 -07 000000459 INF: MeasureProfile done
17-03-17 19:57:40.508 -07 000000459 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:57:40.508 -07 000000459 INF: Autofocus finished
17-03-17 19:57:40.708 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:40.708 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:40.708 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.138953567222242. ----------
17-03-17 19:57:40.708 -07 000000610 INF: Cycle	32	Tile	5	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:40.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28899, sync = True, waitForSettling = True)
17-03-17 19:57:40.718 -07 000000610 INF: Z Motor: Moving to -0.132291 mm, started at -0.138954 mm, distance = 6.66 um
17-03-17 19:57:40.718 -07 000000610 INF: FPGA: Xmit ZDACW 28899\n [Z Motor]
17-03-17 19:57:40.718 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 19:57:40.728 -07 000000610 INF: FPGA: 'ZDACW 28899' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:40.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:40.728 -07 000000501 INF: FPGA: Recv ZDACR 28899
17-03-17 19:57:40.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:40.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.888 -07 000000476 INF: FPGA: Recv ZSGSRD 29880
17-03-17 19:57:40.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:57:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.908 -07 000000478 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:57:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.918 -07 000000480 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:57:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.928 -07 000000476 INF: FPGA: Recv ZSGSRD 29876
17-03-17 19:57:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:57:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:57:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.958 -07 000000482 INF: FPGA: Recv ZSGSRD 29882
17-03-17 19:57:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.968 -07 000000448 INF: FPGA: Recv ZSGSRD 29880
17-03-17 19:57:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:40.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:57:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:40.988 -07 000000551 INF: FPGA: Recv ZPIEZORD 25540
17-03-17 19:57:40.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:40.998 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V.
17-03-17 19:57:40.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29882 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29876 (-131.5 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:57:40.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29882, posNoise = 3, negNoise = 6
17-03-17 19:57:40.998 -07 000000610 INF: Z Motor: After move to -0.132291, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:40.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:57:40.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:40.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:40.998 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:40.998 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:40.998 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:40.998 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:40.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:40.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:40.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:57:40.998 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:40.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:40.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:41.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:41.008 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:41.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:41.008 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:41.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:57:41.018 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:57:41.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:57:41.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:57:41.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29076 150\n [Camera]
17-03-17 19:57:41.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:41.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:41.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:41.628 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:41.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:41.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:41.628 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:41.628 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:41.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:41.638 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:41.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:41.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:41.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29076 792
17-03-17 19:57:41.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:42.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:57:42.008 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:57:42.008 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:42.008 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:57:42.008 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:57:42.008 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:42.008 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:42.008 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:42.008 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:57:42.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:57:42.168 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:42.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:42.168 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:42.168 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:42.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:57:42.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:42.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:42.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:42.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:42.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:57:42.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:42.358 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:42.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29076 150' command took 2 ms to send, 1332 ms to get response, and 1337 ms overall
17-03-17 19:57:42.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:42.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132291659231236. ------
17-03-17 19:57:42.358 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:42.358 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13890 mm
17-03-17 19:57:42.358 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:42.368 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:42.368 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:57:42.368 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:57:42.368 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 19:57:42.368 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30343, sync = True, waitForSettling = False)
17-03-17 19:57:42.368 -07 000000478 INF: Z Motor: Moving to -0.138901 mm, started at -0.132292 mm, distance = -6.61 um
17-03-17 19:57:42.378 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:42.378 -07 000000459 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:57:42.388 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:57:42.388 -07 000000480 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:42.388 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:42.388 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:57:42.388 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:42.398 -07 000000478 INF: FPGA: Xmit ZDACW 30343\n [Z Motor]
17-03-17 19:57:42.398 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:57:42.408 -07 000000478 INF: FPGA: 'ZDACW 30343' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 19:57:42.408 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:42.418 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:42.418 -07 000000501 INF: FPGA: Recv ZDACR 30343
17-03-17 19:57:42.428 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:42.428 -07 000000478 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 19:57:42.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:57:42.558 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:57:42.558 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:42.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:57:42.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:57:42.558 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:42.558 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:42.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:57:42.558 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:42.568 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:57:42.588 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:42.588 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:57:42.688 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.974486,
17-03-17 19:57:42.778 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 19:57:42.778 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:57:42.818 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:42.818 -07 000000448 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:57:42.828 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:42.828 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:42.828 -07 000000480 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:57:42.828 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:57:43.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:43.778 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:57:43.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:43.788 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:43.808 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:43.808 -07 000000480 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:43.808 -07 000000480 INF: Y Motor: Moved to 64.0571 after 1438 ms (table move)
17-03-17 19:57:43.808 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138901 mm (DAC = 30343)
17-03-17 19:57:43.808 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30918
17-03-17 19:57:43.818 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:43.818 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30912
17-03-17 19:57:43.828 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.828 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.828 -07 000000486 INF: FPGA: Recv ZSGSRD 30917
17-03-17 19:57:43.838 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.838 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30917
17-03-17 19:57:43.848 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30908
17-03-17 19:57:43.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30913
17-03-17 19:57:43.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30911
17-03-17 19:57:43.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.878 -07 000000486 INF: FPGA: Recv ZSGSRD 30909
17-03-17 19:57:43.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.888 -07 000000541 INF: FPGA: Recv ZSGSRD 30909
17-03-17 19:57:43.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:43.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30915
17-03-17 19:57:43.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.908 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:43.908 -07 000000501 INF: FPGA: Recv ZPIEZORD 26901
17-03-17 19:57:43.918 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -8.8 V.
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30913 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30912 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30908 (-138.1 uncal um), Max = 30918 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30913, posNoise = 5, negNoise = 5
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: After move to -0.138901, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:57:43.918 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:43.968 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:57:43.968 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:43.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:43.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:43.968 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:43.968 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:43.968 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:43.968 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:43.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:43.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:43.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:43.978 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:43.988 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:57:43.988 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:57:43.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:44.038 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:44.228 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:44.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:44.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:44.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:57:44.268 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:44.268 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:44.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 19:57:44.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:57:44.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:44.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:44.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:57:44.378 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:44.378 -07 000000012 INF: Autofocus start
17-03-17 19:57:44.378 -07 000000012 INF: MeasureProfile start
17-03-17 19:57:44.378 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:44.388 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:44.388 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:44.388 -07 000000012 INF: MeasureProfile done
17-03-17 19:57:44.388 -07 000000012 INF: X=-20  Z correction [um]=-0.1007593
17-03-17 19:57:44.388 -07 000000012 INF: Autofocus finished
17-03-17 19:57:44.588 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:44.588 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:44.588 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138915021949391. ----------
17-03-17 19:57:44.588 -07 000000610 INF: Cycle	32	Tile	6	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:44.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28833, sync = True, waitForSettling = True)
17-03-17 19:57:44.598 -07 000000610 INF: Z Motor: Moving to -0.131989 mm, started at -0.138915 mm, distance = 6.93 um
17-03-17 19:57:44.598 -07 000000610 INF: FPGA: Xmit ZDACW 28833\n [Z Motor]
17-03-17 19:57:44.598 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:57:44.608 -07 000000610 INF: FPGA: 'ZDACW 28833' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:44.608 -07 000000608 INF: FPGA: Recv ZDACR 28833
17-03-17 19:57:44.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:44.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.768 -07 000000459 INF: FPGA: Recv ZSGSRD 29838
17-03-17 19:57:44.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29836
17-03-17 19:57:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.788 -07 000000475 INF: FPGA: Recv ZSGSRD 29833
17-03-17 19:57:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.798 -07 000000448 INF: FPGA: Recv ZSGSRD 29835
17-03-17 19:57:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29836
17-03-17 19:57:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.818 -07 000000478 INF: FPGA: Recv ZSGSRD 29836
17-03-17 19:57:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.828 -07 000000501 INF: FPGA: Recv ZSGSRD 29836
17-03-17 19:57:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29834
17-03-17 19:57:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.848 -07 000000626 INF: FPGA: Recv ZSGSRD 29836
17-03-17 19:57:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:44.858 -07 000000459 INF: FPGA: Recv ZSGSRD 29831
17-03-17 19:57:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:44.868 -07 000000476 INF: FPGA: Recv ZPIEZORD 25525
17-03-17 19:57:44.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:44.878 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.5 V.
17-03-17 19:57:44.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29831 (-131.2 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:57:44.878 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 3, negNoise = 4
17-03-17 19:57:44.878 -07 000000610 INF: Z Motor: After move to -0.131989, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:44.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:57:44.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:44.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:44.878 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:44.878 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:44.878 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:44.878 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:44.878 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:44.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:44.878 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:44.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:44.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:57:44.878 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:44.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:44.888 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:44.888 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:44.888 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:44.888 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:57:44.888 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:44.888 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:44.888 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:44.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 29010 150\n [Camera]
17-03-17 19:57:45.098 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:45.508 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:45.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:45.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:45.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:57:45.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:45.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:45.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:45.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:45.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:57:45.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29010 792
17-03-17 19:57:45.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:45.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:57:45.888 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:57:45.888 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:45.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:57:45.888 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:57:45.888 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:45.888 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:45.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:57:45.888 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:45.898 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:57:46.038 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:46.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:46.048 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:46.048 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:46.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:57:46.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:46.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:46.048 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:46.048 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:46.048 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:57:46.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:46.238 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:46.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 29010 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:57:46.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:46.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131989721260573. ------
17-03-17 19:57:46.348 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:46.358 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13855 mm
17-03-17 19:57:46.358 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:46.358 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:46.358 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:57:46.358 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:46.358 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:57:46.358 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:57:46.358 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30267, sync = True, waitForSettling = False)
17-03-17 19:57:46.358 -07 000000448 INF: Z Motor: Moving to -0.138553 mm, started at -0.131990 mm, distance = -6.56 um
17-03-17 19:57:46.368 -07 000000448 INF: FPGA: Xmit ZDACW 30267\n [Z Motor]
17-03-17 19:57:46.368 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:57:46.378 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:46.378 -07 000000448 INF: FPGA: 'ZDACW 30267' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:57:46.378 -07 000000626 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:57:46.388 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:57:46.388 -07 000000462 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:46.388 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:46.388 -07 000000415 INF: FPGA: Recv ZDACR 30267
17-03-17 19:57:46.388 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:46.388 -07 000000462 INF: Y Motor: Moving 1336 steps-11
17-03-17 19:57:46.398 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:46.398 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:46.398 -07 000000448 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:57:46.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:57:46.428 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:57:46.438 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:46.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:57:46.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:57:46.438 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:46.438 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:46.448 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:57:46.448 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:57:46.448 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:57:46.558 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:46.558 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:57:46.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:46.778 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:57:46.778 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 384 ms overall
17-03-17 19:57:46.808 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:46.808 -07 000000012 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:57:46.818 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:46.818 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:46.818 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:57:46.818 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.835 mm, average velocity = 2.176 mm/sec
17-03-17 19:57:47.768 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:47.768 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:57:47.778 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:47.778 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:47.798 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:47.798 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:47.798 -07 000000462 INF: Y Motor: Moved to 64.8789 after 1438 ms (table move)
17-03-17 19:57:47.798 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138553 mm (DAC = 30267)
17-03-17 19:57:47.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.798 -07 000000502 INF: FPGA: Recv ZSGSRD 30856
17-03-17 19:57:47.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:47.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.808 -07 000000482 INF: FPGA: Recv ZSGSRD 30862
17-03-17 19:57:47.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.818 -07 000000475 INF: FPGA: Recv ZSGSRD 30862
17-03-17 19:57:47.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.828 -07 000000433 INF: FPGA: Recv ZSGSRD 30857
17-03-17 19:57:47.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.838 -07 000000415 INF: FPGA: Recv ZSGSRD 30859
17-03-17 19:57:47.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.848 -07 000000478 INF: FPGA: Recv ZSGSRD 30853
17-03-17 19:57:47.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.858 -07 000000448 INF: FPGA: Recv ZSGSRD 30855
17-03-17 19:57:47.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.868 -07 000000462 INF: FPGA: Recv ZSGSRD 30860
17-03-17 19:57:47.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.878 -07 000000459 INF: FPGA: Recv ZSGSRD 30854
17-03-17 19:57:47.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:47.888 -07 000000415 INF: FPGA: Recv ZSGSRD 30865
17-03-17 19:57:47.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.898 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:47.898 -07 000000502 INF: FPGA: Recv ZPIEZORD 26874
17-03-17 19:57:47.908 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.8 V.
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30858 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30858 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30853 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30858, posNoise = 7, negNoise = 5
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: After move to -0.138553, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:57:47.908 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:47.958 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:57:47.958 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:47.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:47.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:47.958 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:47.958 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:47.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:47.958 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:47.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:57:47.958 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:47.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:47.968 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:47.968 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:57:47.968 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:57:47.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:48.018 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:48.048 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.015368,
17-03-17 19:57:48.218 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:48.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:48.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:48.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:48.258 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:48.258 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:48.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:57:48.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:57:48.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:48.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:48.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:57:48.358 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:48.358 -07 000000502 INF: Autofocus start
17-03-17 19:57:48.358 -07 000000502 INF: MeasureProfile start
17-03-17 19:57:48.358 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:48.368 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:48.368 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:48.378 -07 000000502 INF: MeasureProfile done
17-03-17 19:57:48.378 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:57:48.378 -07 000000502 INF: Autofocus finished
17-03-17 19:57:48.568 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:48.568 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:48.568 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138561690281595. ----------
17-03-17 19:57:48.568 -07 000000610 INF: Cycle	32	Tile	7	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:48.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28762, sync = True, waitForSettling = True)
17-03-17 19:57:48.578 -07 000000610 INF: Z Motor: Moving to -0.131664 mm, started at -0.138562 mm, distance = 6.90 um
17-03-17 19:57:48.578 -07 000000610 INF: FPGA: Xmit ZDACW 28762\n [Z Motor]
17-03-17 19:57:48.578 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:57:48.588 -07 000000610 INF: FPGA: 'ZDACW 28762' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:48.588 -07 000000480 INF: FPGA: Recv ZDACR 28762
17-03-17 19:57:48.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.748 -07 000000431 INF: FPGA: Recv ZSGSRD 29791
17-03-17 19:57:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.758 -07 000000462 INF: FPGA: Recv ZSGSRD 29789
17-03-17 19:57:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29781
17-03-17 19:57:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:57:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:57:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.798 -07 000000486 INF: FPGA: Recv ZSGSRD 29785
17-03-17 19:57:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29780
17-03-17 19:57:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.818 -07 000000593 INF: FPGA: Recv ZSGSRD 29788
17-03-17 19:57:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.828 -07 000000541 INF: FPGA: Recv ZSGSRD 29786
17-03-17 19:57:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:48.838 -07 000000478 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:57:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:48.848 -07 000000431 INF: FPGA: Recv ZPIEZORD 25443
17-03-17 19:57:48.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:48.858 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.5 V.
17-03-17 19:57:48.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:48.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 4, negNoise = 7
17-03-17 19:57:48.858 -07 000000610 INF: Z Motor: After move to -0.131664, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:48.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:57:48.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:48.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:48.858 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:48.858 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:48.858 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:48.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:48.858 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:48.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:48.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:48.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:48.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:48.858 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:48.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:48.868 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:48.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:48.868 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:48.878 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:57:48.878 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:57:48.878 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:57:48.878 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:57:48.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28939 150\n [Camera]
17-03-17 19:57:49.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:49.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:49.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:49.488 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:49.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:49.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:49.488 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:49.488 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:49.488 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:49.498 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:49.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:49.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28939 792
17-03-17 19:57:49.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:49.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:57:49.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:57:49.878 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:49.878 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:57:49.878 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:57:49.878 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:49.888 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:49.888 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:57:49.888 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:49.888 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:57:50.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:50.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:50.028 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:50.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:50.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:50.028 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:50.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:50.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:57:50.038 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:50.038 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:57:50.218 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:50.218 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:50.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28939 150' command took 2 ms to send, 1332 ms to get response, and 1337 ms overall
17-03-17 19:57:50.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:50.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131681359077769. ------
17-03-17 19:57:50.338 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:50.338 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13825 mm
17-03-17 19:57:50.338 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:50.338 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:50.338 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:57:50.338 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:57:50.338 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30201, sync = True, waitForSettling = False)
17-03-17 19:57:50.338 -07 000000501 INF: Z Motor: Moving to -0.138251 mm, started at -0.131681 mm, distance = -6.57 um
17-03-17 19:57:50.348 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:50.348 -07 000000501 INF: FPGA: Xmit ZDACW 30201\n [Z Motor]
17-03-17 19:57:50.348 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:57:50.358 -07 000000501 INF: FPGA: 'ZDACW 30201' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:57:50.358 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:50.358 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:57:50.368 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:57:50.368 -07 000000012 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:50.368 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:50.368 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:50.368 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:57:50.378 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:50.378 -07 000000482 INF: FPGA: Recv ZDACR 30201
17-03-17 19:57:50.388 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:50.388 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:57:50.388 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:57:50.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:57:50.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:57:50.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:50.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:57:50.428 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:57:50.428 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:50.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:50.438 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:57:50.438 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:57:50.438 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:57:50.568 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:50.568 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:57:50.758 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:57:50.758 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:57:50.798 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:50.798 -07 000000433 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:57:50.808 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:50.808 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:50.808 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:57:50.808 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 19:57:51.738 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:51.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:51.758 -07 000000431 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:57:51.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:51.768 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:51.788 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:51.788 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:57:51.788 -07 000000012 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 19:57:51.788 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138251 mm (DAC = 30201)
17-03-17 19:57:51.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.798 -07 000000547 INF: FPGA: Recv ZSGSRD 30813
17-03-17 19:57:51.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:57:51.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.798 -07 000000502 INF: FPGA: Recv ZSGSRD 30805
17-03-17 19:57:51.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:51.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.808 -07 000000475 INF: FPGA: Recv ZSGSRD 30811
17-03-17 19:57:51.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30813
17-03-17 19:57:51.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.828 -07 000000433 INF: FPGA: Recv ZSGSRD 30814
17-03-17 19:57:51.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.838 -07 000000608 INF: FPGA: Recv ZSGSRD 30813
17-03-17 19:57:51.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30809
17-03-17 19:57:51.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30811
17-03-17 19:57:51.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.868 -07 000000431 INF: FPGA: Recv ZSGSRD 30812
17-03-17 19:57:51.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:51.878 -07 000000626 INF: FPGA: Recv ZSGSRD 30806
17-03-17 19:57:51.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.888 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:51.888 -07 000000431 INF: FPGA: Recv ZPIEZORD 26765
17-03-17 19:57:51.898 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -8.9 V.
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30811 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30805 (-137.4 uncal um), Max = 30814 (-137.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30811, posNoise = 3, negNoise = 6
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: After move to -0.138251, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:57:51.898 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:51.948 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:57:51.948 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:51.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:51.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:51.948 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:51.948 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:51.948 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:51.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:51.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:51.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:51.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:51.958 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:51.968 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:57:51.968 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:57:51.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:52.018 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:52.218 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:52.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:52.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:52.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:57:52.258 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:52.258 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:52.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:57:52.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:57:52.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:52.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:52.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:57:52.358 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:52.358 -07 000000475 INF: Autofocus start
17-03-17 19:57:52.358 -07 000000475 INF: MeasureProfile start
17-03-17 19:57:52.368 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:52.368 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:57:52.368 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:52.378 -07 000000475 INF: MeasureProfile done
17-03-17 19:57:52.378 -07 000000475 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:57:52.378 -07 000000475 INF: Autofocus finished
17-03-17 19:57:52.568 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:52.568 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:57:52.568 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138259752310932. ----------
17-03-17 19:57:52.578 -07 000000610 INF: Cycle	32	Tile	8	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:52.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28742, sync = True, waitForSettling = True)
17-03-17 19:57:52.578 -07 000000610 INF: Z Motor: Moving to -0.131572 mm, started at -0.138260 mm, distance = 6.69 um
17-03-17 19:57:52.578 -07 000000610 INF: FPGA: Xmit ZDACW 28742\n [Z Motor]
17-03-17 19:57:52.578 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:57:52.588 -07 000000610 INF: FPGA: 'ZDACW 28742' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:52.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:52.588 -07 000000448 INF: FPGA: Recv ZDACR 28742
17-03-17 19:57:52.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29770
17-03-17 19:57:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29779
17-03-17 19:57:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.768 -07 000000541 INF: FPGA: Recv ZSGSRD 29766
17-03-17 19:57:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:57:52.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.788 -07 000000476 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:57:52.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29769
17-03-17 19:57:52.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:57:52.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29768
17-03-17 19:57:52.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:57:52.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:52.838 -07 000000431 INF: FPGA: Recv ZSGSRD 29770
17-03-17 19:57:52.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:52.848 -07 000000448 INF: FPGA: Recv ZPIEZORD 25420
17-03-17 19:57:52.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:52.858 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -9.6 V.
17-03-17 19:57:52.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29772 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29772 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29766 (-130.8 uncal um), Max = 29779 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:57:52.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29772, posNoise = 7, negNoise = 6
17-03-17 19:57:52.858 -07 000000610 INF: Z Motor: After move to -0.131572, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:52.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:57:52.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:52.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:52.858 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:52.858 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:52.858 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:52.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:52.858 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:52.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:52.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:52.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:52.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:52.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:52.868 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:57:52.868 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:52.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:52.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:52.868 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:57:52.868 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:57:52.878 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:57:52.878 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:57:52.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28918 150\n [Camera]
17-03-17 19:57:53.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:53.408 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.020806,
17-03-17 19:57:53.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:53.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:53.488 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:53.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:53.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:53.488 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:53.488 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:53.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:57:53.488 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:53.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:57:53.678 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28918 792
17-03-17 19:57:53.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:53.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:57:53.868 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:57:53.868 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:53.868 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:57:53.868 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:57:53.868 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:53.868 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:53.868 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:57:53.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:53.878 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:57:54.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:54.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:54.018 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:54.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:54.028 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:54.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:57:54.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:54.028 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:54.028 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:54.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:57:54.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:57:54.218 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:54.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28918 150' command took 2 ms to send, 1330 ms to get response, and 1338 ms overall
17-03-17 19:57:54.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:54.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131584995895642. ------
17-03-17 19:57:54.218 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:54.218 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13788 mm
17-03-17 19:57:54.218 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:54.228 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:54.228 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:54.228 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:57:54.228 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:57:54.228 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:54.228 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30119, sync = True, waitForSettling = False)
17-03-17 19:57:54.228 -07 000000415 INF: Z Motor: Moving to -0.137876 mm, started at -0.131585 mm, distance = -6.29 um
17-03-17 19:57:54.238 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:54.238 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:57:54.248 -07 000000415 INF: FPGA: Xmit ZDACW 30119\n [Z Motor]
17-03-17 19:57:54.248 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:57:54.248 -07 000000501 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:54.248 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:54.248 -07 000000501 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:57:54.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 19:57:54.258 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:54.258 -07 000000415 INF: FPGA: 'ZDACW 30119' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:57:54.268 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:54.268 -07 000000448 INF: FPGA: Recv ZDACR 30119
17-03-17 19:57:54.278 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:54.278 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:57:54.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:57:54.428 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:57:54.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:54.428 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:54.428 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:57:54.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:57:54.428 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:57:54.428 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:54.428 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:54.428 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:57:54.438 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:57:54.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:57:54.628 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:57:54.628 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:57:54.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:54.668 -07 000000448 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:57:54.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:57:54.678 -07 000000501 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:54.678 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:57:54.678 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 19:57:55.628 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:55.628 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:57:55.638 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:57:55.638 -07 000000501 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:55.658 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:55.658 -07 000000501 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:57:55.658 -07 000000501 INF: Y Motor: Moved to 66.5396 after 1432 ms (table move)
17-03-17 19:57:55.658 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137876 mm (DAC = 30119)
17-03-17 19:57:55.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.658 -07 000000476 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:57:55.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:55.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.668 -07 000000480 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:57:55.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30753
17-03-17 19:57:55.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:57:55.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.698 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:57:55.708 -07 000000433 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:57:55.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:57:55.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30747
17-03-17 19:57:55.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.738 -07 000000476 INF: FPGA: Recv ZSGSRD 30751
17-03-17 19:57:55.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.748 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:55.748 -07 000000608 INF: FPGA: Recv ZSGSRD 30751
17-03-17 19:57:55.758 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.758 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:55.758 -07 000000541 INF: FPGA: Recv ZPIEZORD 26732
17-03-17 19:57:55.768 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -8.9 V.
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30747 (-137.1 uncal um), Max = 30759 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 5, negNoise = 7
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: After move to -0.137876, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:57:55.768 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:55.818 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:57:55.818 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:55.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:55.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:55.818 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:55.818 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:55.818 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:55.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:55.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:57:55.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:55.828 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:55.828 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:55.828 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:57:55.838 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:57:55.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:55.878 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:57:56.078 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:57:56.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:57:56.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:57:56.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:57:56.118 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:57:56.118 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:57:56.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:57:56.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:57:56.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:56.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:57:56.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:57:56.218 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:56.218 -07 000000626 INF: Autofocus start
17-03-17 19:57:56.218 -07 000000626 INF: MeasureProfile start
17-03-17 19:57:56.218 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:56.228 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:57:56.228 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:57:56.228 -07 000000626 INF: MeasureProfile done
17-03-17 19:57:56.228 -07 000000626 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:57:56.228 -07 000000626 INF: Autofocus finished
17-03-17 19:57:56.428 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:57:56.428 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:56.428 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137893572218851. ----------
17-03-17 19:57:56.428 -07 000000610 INF: Cycle	32	Tile	9	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:57:56.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28660, sync = True, waitForSettling = True)
17-03-17 19:57:56.438 -07 000000610 INF: Z Motor: Moving to -0.131197 mm, started at -0.137894 mm, distance = 6.70 um
17-03-17 19:57:56.438 -07 000000610 INF: FPGA: Xmit ZDACW 28660\n [Z Motor]
17-03-17 19:57:56.438 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:57:56.448 -07 000000610 INF: FPGA: 'ZDACW 28660' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:57:56.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:56.448 -07 000000593 INF: FPGA: Recv ZDACR 28660
17-03-17 19:57:56.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:57:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29709
17-03-17 19:57:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29717
17-03-17 19:57:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29716
17-03-17 19:57:56.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:57:56.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.648 -07 000000501 INF: FPGA: Recv ZSGSRD 29709
17-03-17 19:57:56.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29709
17-03-17 19:57:56.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29719
17-03-17 19:57:56.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:57:56.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29709
17-03-17 19:57:56.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:56.698 -07 000000541 INF: FPGA: Recv ZSGSRD 29716
17-03-17 19:57:56.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:56.708 -07 000000448 INF: FPGA: Recv ZPIEZORD 25369
17-03-17 19:57:56.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:56.718 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.5 V.
17-03-17 19:57:56.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29713 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29712 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29709 (-130.4 uncal um), Max = 29719 (-130.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:57:56.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29713, posNoise = 6, negNoise = 4
17-03-17 19:57:56.718 -07 000000610 INF: Z Motor: After move to -0.131197, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:56.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:57:56.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:56.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:56.718 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:56.718 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:57:56.718 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:56.718 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:56.718 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:57:56.718 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:56.718 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:57:56.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:57:56.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:57:56.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:57:56.728 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:57:56.728 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:57:56.728 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:57:56.728 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:57:56.728 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:57:56.728 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:57:56.738 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:57:56.738 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:57:56.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:57:56.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28837 150\n [Camera]
17-03-17 19:57:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:57:56.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:57:57.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:57:57.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:57:57.348 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:57.348 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:57.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:57:57.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:57:57.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:57:57.348 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:57.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:57.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:57:57.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28837 792
17-03-17 19:57:57.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:57:57.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:57:57.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:57:57.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:57.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:57.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:57:57.728 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:57:57.728 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:57.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:57.738 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:57:57.738 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:57:57.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:57:57.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:57:57.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:57:57.888 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:57:57.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:57:57.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:57:57.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:57:57.888 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:57:57.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:57:57.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:57:58.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:57:58.078 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:57:58.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28837 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:57:58.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:57:58.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131205967379278. ------
17-03-17 19:57:58.078 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:57:58.078 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13801 mm
17-03-17 19:57:58.078 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:57:58.188 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:57:58.198 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 19:57:58.198 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:57:58.198 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30148, sync = True, waitForSettling = False)
17-03-17 19:57:58.198 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:57:58.198 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:57:58.198 -07 000000475 INF: Z Motor: Moving to -0.138009 mm, started at -0.131206 mm, distance = -6.80 um
17-03-17 19:57:58.208 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:58.208 -07 000000482 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:57:58.218 -07 000000475 INF: FPGA: Xmit ZDACW 30148\n [Z Motor]
17-03-17 19:57:58.218 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:57:58.218 -07 000000480 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:58.218 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:57:58.218 -07 000000480 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:57:58.218 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:57:58.228 -07 000000475 INF: FPGA: 'ZDACW 30148' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:57:58.228 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:57:58.228 -07 000000433 INF: FPGA: Recv ZDACR 30148
17-03-17 19:57:58.238 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:58.238 -07 000000475 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:57:58.238 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:57:58.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:57:58.278 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:57:58.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:58.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:57:58.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:57:58.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:57:58.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:57:58.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:57:58.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:57:58.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:57:58.398 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:57:58.398 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:57:58.608 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:57:58.608 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:57:58.648 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:58.648 -07 000000476 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:57:58.658 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:57:58.658 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:58.658 -07 000000480 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:57:58.658 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:57:58.768 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.02213,
17-03-17 19:57:59.608 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:57:59.608 -07 000000547 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:57:59.618 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.618 -07 000000480 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:57:59.638 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:57:59.638 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:57:59.638 -07 000000480 INF: Y Motor: Moved to 67.3726 after 1442 ms (table move)
17-03-17 19:57:59.638 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138009 mm (DAC = 30148)
17-03-17 19:57:59.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.638 -07 000000608 INF: FPGA: Recv ZSGSRD 30770
17-03-17 19:57:59.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:57:59.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30773
17-03-17 19:57:59.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.658 -07 000000541 INF: FPGA: Recv ZSGSRD 30773
17-03-17 19:57:59.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.668 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.668 -07 000000502 INF: FPGA: Recv ZSGSRD 30781
17-03-17 19:57:59.678 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30767
17-03-17 19:57:59.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.688 -07 000000431 INF: FPGA: Recv ZSGSRD 30780
17-03-17 19:57:59.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.698 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30777
17-03-17 19:57:59.708 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.708 -07 000000012 INF: FPGA: Recv ZSGSRD 30766
17-03-17 19:57:59.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.718 -07 000000547 INF: FPGA: Recv ZSGSRD 30777
17-03-17 19:57:59.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:57:59.728 -07 000000480 INF: FPGA: Recv ZSGSRD 30768
17-03-17 19:57:59.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.738 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:57:59.738 -07 000000608 INF: FPGA: Recv ZPIEZORD 26775
17-03-17 19:57:59.748 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.8 V.
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30773 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30773 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30766 (-137.2 uncal um), Max = 30781 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30773, posNoise = 8, negNoise = 7
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: After move to -0.138009, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:57:59.748 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:57:59.798 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 19:57:59.798 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:57:59.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:57:59.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:57:59.798 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:57:59.798 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:57:59.798 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:57:59.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:57:59.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:57:59.798 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:57:59.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:57:59.808 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:57:59.818 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:57:59.818 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:57:59.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:57:59.858 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:00.058 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:00.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:00.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:00.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:00.098 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:00.098 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:00.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:58:00.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:58:00.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:00.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:00.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:58:00.198 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:00.198 -07 000000480 INF: Autofocus start
17-03-17 19:58:00.198 -07 000000480 INF: MeasureProfile start
17-03-17 19:58:00.198 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:00.208 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:00.208 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:00.208 -07 000000480 INF: MeasureProfile done
17-03-17 19:58:00.208 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:58:00.208 -07 000000480 INF: Autofocus finished
17-03-17 19:58:00.408 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:00.408 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:00.418 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.138015632249545. ----------
17-03-17 19:58:00.418 -07 000000610 INF: Cycle	32	Tile	10	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:00.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28642, sync = True, waitForSettling = True)
17-03-17 19:58:00.418 -07 000000610 INF: Z Motor: Moving to -0.131115 mm, started at -0.138016 mm, distance = 6.90 um
17-03-17 19:58:00.418 -07 000000610 INF: FPGA: Xmit ZDACW 28642\n [Z Motor]
17-03-17 19:58:00.418 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:58:00.428 -07 000000610 INF: FPGA: 'ZDACW 28642' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:00.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:00.428 -07 000000476 INF: FPGA: Recv ZDACR 28642
17-03-17 19:58:00.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.588 -07 000000459 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:58:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29698
17-03-17 19:58:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:58:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.618 -07 000000547 INF: FPGA: Recv ZSGSRD 29704
17-03-17 19:58:00.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.628 -07 000000478 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:58:00.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.638 -07 000000486 INF: FPGA: Recv ZSGSRD 29701
17-03-17 19:58:00.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.648 -07 000000478 INF: FPGA: Recv ZSGSRD 29698
17-03-17 19:58:00.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.658 -07 000000486 INF: FPGA: Recv ZSGSRD 29702
17-03-17 19:58:00.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29705
17-03-17 19:58:00.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:00.678 -07 000000626 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:58:00.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:00.688 -07 000000431 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 19:58:00.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:00.698 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 19:58:00.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29700 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:58:00.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 5, negNoise = 4
17-03-17 19:58:00.698 -07 000000610 INF: Z Motor: After move to -0.131115, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:00.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:58:00.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:00.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:00.698 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:00.698 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:00.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:00.698 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:00.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:00.698 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:00.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:00.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:00.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:00.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:00.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:58:00.698 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:00.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:00.708 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:00.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:58:00.708 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:00.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:58:00.718 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:00.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28819 150\n [Camera]
17-03-17 19:58:00.918 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:01.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:01.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:01.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:01.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:01.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:01.328 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:01.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:01.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:01.328 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:01.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:01.518 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28819 792
17-03-17 19:58:01.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:01.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:58:01.698 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:58:01.708 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:01.708 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:58:01.708 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:58:01.708 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:01.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:58:01.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:58:01.708 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:01.718 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:58:01.738 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:01.858 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:01.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:01.868 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:01.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:01.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:01.868 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:01.878 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:01.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:58:01.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:01.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:58:02.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:02.058 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:02.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28819 150' command took 2 ms to send, 1330 ms to get response, and 1337 ms overall
17-03-17 19:58:02.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:02.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131128876833577. ------
17-03-17 19:58:02.058 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:02.058 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13757 mm
17-03-17 19:58:02.058 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:02.058 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:58:02.058 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 19:58:02.058 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:02.068 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30051, sync = True, waitForSettling = False)
17-03-17 19:58:02.068 -07 000000486 INF: Z Motor: Moving to -0.137565 mm, started at -0.131129 mm, distance = -6.44 um
17-03-17 19:58:02.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:02.068 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:02.068 -07 000000478 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:58:02.188 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:02.188 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 113 ms to get response, and 124 ms overall
17-03-17 19:58:02.188 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:02.188 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:02.188 -07 000000608 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:58:02.198 -07 000000486 INF: FPGA: Xmit ZDACW 30051\n [Z Motor]
17-03-17 19:58:02.198 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:58:02.208 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:02.208 -07 000000486 INF: FPGA: 'ZDACW 30051' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 19:58:02.218 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:02.218 -07 000000501 INF: FPGA: Recv ZDACR 30051
17-03-17 19:58:02.228 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:58:02.228 -07 000000486 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-17 19:58:02.258 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:58:02.258 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:58:02.258 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:02.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:58:02.258 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:58:02.258 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:02.268 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:02.268 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:02.268 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:58:02.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:58:02.388 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:02.388 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 324 ms overall
17-03-17 19:58:02.578 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:58:02.578 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:58:02.618 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:02.618 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:58:02.628 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:02.628 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:02.628 -07 000000608 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:58:02.628 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 19:58:03.578 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:03.578 -07 000000475 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:58:03.588 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:03.588 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:03.608 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:03.608 -07 000000608 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:58:03.608 -07 000000608 INF: Y Motor: Moved to 68.2051 after 1541 ms (table move)
17-03-17 19:58:03.608 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137565 mm (DAC = 30051)
17-03-17 19:58:03.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.608 -07 000000476 INF: FPGA: Recv ZSGSRD 30700
17-03-17 19:58:03.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:03.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.618 -07 000000478 INF: FPGA: Recv ZSGSRD 30703
17-03-17 19:58:03.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.628 -07 000000486 INF: FPGA: Recv ZSGSRD 30706
17-03-17 19:58:03.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.638 -07 000000593 INF: FPGA: Recv ZSGSRD 30708
17-03-17 19:58:03.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30709
17-03-17 19:58:03.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30709
17-03-17 19:58:03.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.668 -07 000000459 INF: FPGA: Recv ZSGSRD 30702
17-03-17 19:58:03.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30702
17-03-17 19:58:03.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.688 -07 000000431 INF: FPGA: Recv ZSGSRD 30702
17-03-17 19:58:03.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:03.698 -07 000000502 INF: FPGA: Recv ZSGSRD 30699
17-03-17 19:58:03.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.708 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:03.708 -07 000000475 INF: FPGA: Recv ZPIEZORD 26720
17-03-17 19:58:03.718 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -8.8 V.
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30702 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30699 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 5, negNoise = 5
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: After move to -0.137565, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: Settle wait time = 1545 ms, measure time = 105 ms (allowed 150 ms), total time = 1650 ms
17-03-17 19:58:03.718 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:03.768 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms
17-03-17 19:58:03.768 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:03.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:03.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:03.768 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:03.768 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:03.768 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:03.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:03.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:03.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:03.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:03.778 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:03.778 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:58:03.778 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:58:03.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:03.828 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:04.028 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:04.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:04.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:04.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:04.068 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:04.068 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:04.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:58:04.128 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.003063,
17-03-17 19:58:04.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:58:04.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:04.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:04.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:58:04.168 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:04.168 -07 000000502 INF: Autofocus start
17-03-17 19:58:04.168 -07 000000502 INF: MeasureProfile start
17-03-17 19:58:04.168 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:04.178 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:04.178 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:04.178 -07 000000502 INF: MeasureProfile done
17-03-17 19:58:04.178 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:58:04.178 -07 000000502 INF: Autofocus finished
17-03-17 19:58:04.378 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:04.378 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:04.378 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137572361611763. ----------
17-03-17 19:58:04.378 -07 000000610 INF: Cycle	32	Tile	11	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:04.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28575, sync = True, waitForSettling = True)
17-03-17 19:58:04.388 -07 000000610 INF: Z Motor: Moving to -0.130808 mm, started at -0.137572 mm, distance = 6.76 um
17-03-17 19:58:04.388 -07 000000610 INF: FPGA: Xmit ZDACW 28575\n [Z Motor]
17-03-17 19:58:04.388 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:58:04.398 -07 000000610 INF: FPGA: 'ZDACW 28575' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:04.398 -07 000000415 INF: FPGA: Recv ZDACR 28575
17-03-17 19:58:04.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.558 -07 000000502 INF: FPGA: Recv ZSGSRD 29648
17-03-17 19:58:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29649
17-03-17 19:58:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.578 -07 000000431 INF: FPGA: Recv ZSGSRD 29653
17-03-17 19:58:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.588 -07 000000551 INF: FPGA: Recv ZSGSRD 29648
17-03-17 19:58:04.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29658
17-03-17 19:58:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29650
17-03-17 19:58:04.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29644
17-03-17 19:58:04.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.628 -07 000000608 INF: FPGA: Recv ZSGSRD 29656
17-03-17 19:58:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.638 -07 000000478 INF: FPGA: Recv ZSGSRD 29655
17-03-17 19:58:04.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:04.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29652
17-03-17 19:58:04.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:04.658 -07 000000593 INF: FPGA: Recv ZPIEZORD 25336
17-03-17 19:58:04.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:04.668 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.5 V.
17-03-17 19:58:04.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29651 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29651 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29644 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:58:04.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29651, posNoise = 7, negNoise = 7
17-03-17 19:58:04.668 -07 000000610 INF: Z Motor: After move to -0.130808, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:04.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:58:04.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:04.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:04.668 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:04.668 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:04.668 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:04.668 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:04.668 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:04.668 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:04.668 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:04.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:04.668 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:04.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:04.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:04.668 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:04.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:04.678 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:04.678 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:58:04.678 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 19:58:04.688 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:58:04.688 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:04.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28752 150\n [Camera]
17-03-17 19:58:04.888 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:05.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:05.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:05.298 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:05.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:05.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:05.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:05.308 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:05.308 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:05.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:05.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:05.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28752 792
17-03-17 19:58:05.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:05.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:58:05.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:58:05.688 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:58:05.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:05.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:58:05.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:05.688 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:58:05.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:58:05.688 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:58:05.698 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:58:05.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:05.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:05.838 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:05.838 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:05.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:58:05.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:05.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:05.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:05.838 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:05.838 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:58:06.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:06.028 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:06.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28752 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 19:58:06.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:06.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130807666226489. ------
17-03-17 19:58:06.028 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:06.028 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13751 mm
17-03-17 19:58:06.028 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:06.038 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:58:06.038 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:58:06.038 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:06.038 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30039, sync = True, waitForSettling = False)
17-03-17 19:58:06.038 -07 000000501 INF: Z Motor: Moving to -0.137510 mm, started at -0.130808 mm, distance = -6.70 um
17-03-17 19:58:06.038 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:06.038 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:58:06.038 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:58:06.048 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:06.048 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:06.048 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:06.048 -07 000000626 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:58:06.048 -07 000000501 INF: FPGA: Xmit ZDACW 30039\n [Z Motor]
17-03-17 19:58:06.048 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:58:06.058 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:06.058 -07 000000501 INF: FPGA: 'ZDACW 30039' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:58:06.068 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:06.078 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:06.078 -07 000000475 INF: FPGA: Recv ZDACR 30039
17-03-17 19:58:06.088 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:06.088 -07 000000501 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:58:06.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:58:06.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:58:06.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:06.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:58:06.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:58:06.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:06.238 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:06.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:58:06.248 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:58:06.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:58:06.258 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:06.258 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 19:58:06.438 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:58:06.438 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:58:06.478 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:06.478 -07 000000593 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:58:06.488 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:58:06.488 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:06.488 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:58:06.488 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 19:58:06.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:07.438 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:07.438 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:58:07.448 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.448 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:07.468 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:07.468 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:58:07.468 -07 000000626 INF: Y Motor: Moved to 69.0278 after 1430 ms (table move)
17-03-17 19:58:07.468 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137510 mm (DAC = 30039)
17-03-17 19:58:07.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.468 -07 000000502 INF: FPGA: Recv ZSGSRD 30700
17-03-17 19:58:07.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:58:07.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.478 -07 000000482 INF: FPGA: Recv ZSGSRD 30694
17-03-17 19:58:07.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30695
17-03-17 19:58:07.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30690
17-03-17 19:58:07.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30703
17-03-17 19:58:07.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.518 -07 000000478 INF: FPGA: Recv ZSGSRD 30696
17-03-17 19:58:07.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.528 -07 000000551 INF: FPGA: Recv ZSGSRD 30693
17-03-17 19:58:07.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30693
17-03-17 19:58:07.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.548 -07 000000541 INF: FPGA: Recv ZSGSRD 30696
17-03-17 19:58:07.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:07.558 -07 000000431 INF: FPGA: Recv ZSGSRD 30694
17-03-17 19:58:07.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.568 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:07.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 26714
17-03-17 19:58:07.578 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.8 V.
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30695 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30694 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30690 (-136.7 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30695, posNoise = 8, negNoise = 5
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: After move to -0.137510, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:58:07.578 -07 000000448 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:07.628 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:58:07.628 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:07.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:07.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:07.628 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:07.628 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:07.628 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:07.628 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:07.628 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:58:07.628 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:07.638 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:07.638 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:07.648 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:58:07.648 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:58:07.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:07.698 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:07.888 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:07.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:07.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:07.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:58:07.928 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:07.928 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:07.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:58:08.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:58:08.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:08.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:08.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:58:08.038 -07 000000415 INF: Autofocus start
17-03-17 19:58:08.038 -07 000000415 INF: MeasureProfile start
17-03-17 19:58:08.038 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:08.038 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:08.048 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:08.048 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:08.048 -07 000000415 INF: MeasureProfile done
17-03-17 19:58:08.048 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:58:08.048 -07 000000415 INF: Autofocus finished
17-03-17 19:58:08.248 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:08.248 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:08.248 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137514543702488. ----------
17-03-17 19:58:08.248 -07 000000610 INF: Cycle	32	Tile	12	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:08.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28534, sync = True, waitForSettling = True)
17-03-17 19:58:08.258 -07 000000610 INF: Z Motor: Moving to -0.130620 mm, started at -0.137515 mm, distance = 6.89 um
17-03-17 19:58:08.258 -07 000000610 INF: FPGA: Xmit ZDACW 28534\n [Z Motor]
17-03-17 19:58:08.258 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:58:08.268 -07 000000610 INF: FPGA: 'ZDACW 28534' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:08.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:08.268 -07 000000478 INF: FPGA: Recv ZDACR 28534
17-03-17 19:58:08.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:08.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.428 -07 000000486 INF: FPGA: Recv ZSGSRD 29625
17-03-17 19:58:08.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:08.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.438 -07 000000415 INF: FPGA: Recv ZSGSRD 29626
17-03-17 19:58:08.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.448 -07 000000486 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:58:08.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.458 -07 000000415 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:58:08.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:58:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.478 -07 000000459 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:58:08.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:58:08.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.498 -07 000000415 INF: FPGA: Recv ZSGSRD 29621
17-03-17 19:58:08.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:58:08.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:08.518 -07 000000501 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:58:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:08.528 -07 000000475 INF: FPGA: Recv ZPIEZORD 25307
17-03-17 19:58:08.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:08.538 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.5 V.
17-03-17 19:58:08.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29618 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:58:08.538 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 6, negNoise = 5
17-03-17 19:58:08.538 -07 000000610 INF: Z Motor: After move to -0.130620, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:08.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:58:08.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:08.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:08.538 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:08.538 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:08.538 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:08.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:08.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:08.538 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:08.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:08.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:08.538 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:58:08.538 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:08.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:08.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:08.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:08.548 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:08.558 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:58:08.558 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:08.558 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:58:08.558 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:08.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28711 150\n [Camera]
17-03-17 19:58:08.758 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:09.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:09.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:09.168 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:09.168 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:09.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:58:09.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:09.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:09.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:09.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:09.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:58:09.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 792
17-03-17 19:58:09.488 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.977204,
17-03-17 19:58:09.508 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:09.548 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:58:09.548 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:58:09.548 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:09.548 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:58:09.548 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:58:09.548 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:09.548 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:09.548 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:09.548 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:58:09.558 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:58:09.698 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:09.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:09.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:09.708 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:09.708 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:58:09.708 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:09.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:09.708 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:09.708 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:09.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:58:09.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:09.898 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:09.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28711 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:58:09.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:09.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.13062778828652. ------
17-03-17 19:58:10.018 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:10.018 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13706 mm
17-03-17 19:58:10.018 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:10.018 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:10.018 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:58:10.018 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:58:10.018 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29940, sync = True, waitForSettling = False)
17-03-17 19:58:10.018 -07 000000462 INF: Z Motor: Moving to -0.137057 mm, started at -0.130628 mm, distance = -6.43 um
17-03-17 19:58:10.028 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:10.028 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:10.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:10.038 -07 000000012 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:58:10.048 -07 000000462 INF: FPGA: Xmit ZDACW 29940\n [Z Motor]
17-03-17 19:58:10.048 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:58:10.048 -07 000000502 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:10.048 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:10.048 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:58:10.048 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:58:10.058 -07 000000462 INF: FPGA: 'ZDACW 29940' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:58:10.058 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:10.068 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:10.068 -07 000000475 INF: FPGA: Recv ZDACR 29940
17-03-17 19:58:10.078 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:58:10.078 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:58:10.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:58:10.098 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:58:10.098 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:58:10.098 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:10.098 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:58:10.098 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:10.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:10.098 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:58:10.098 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:58:10.108 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:58:10.228 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:10.228 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:10.438 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:58:10.438 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-17 19:58:10.468 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:10.468 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:58:10.478 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:10.478 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:10.478 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:58:10.478 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.161 mm/sec
17-03-17 19:58:11.428 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:11.428 -07 000000012 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:58:11.438 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:11.438 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:11.458 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:11.458 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:58:11.458 -07 000000502 INF: Y Motor: Moved to 69.8633 after 1434 ms (table move)
17-03-17 19:58:11.458 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137057 mm (DAC = 29940)
17-03-17 19:58:11.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.458 -07 000000433 INF: FPGA: Recv ZSGSRD 30630
17-03-17 19:58:11.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:11.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.468 -07 000000415 INF: FPGA: Recv ZSGSRD 30621
17-03-17 19:58:11.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.478 -07 000000478 INF: FPGA: Recv ZSGSRD 30616
17-03-17 19:58:11.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.488 -07 000000593 INF: FPGA: Recv ZSGSRD 30618
17-03-17 19:58:11.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.498 -07 000000502 INF: FPGA: Recv ZSGSRD 30623
17-03-17 19:58:11.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.508 -07 000000478 INF: FPGA: Recv ZSGSRD 30627
17-03-17 19:58:11.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:11.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30627
17-03-17 19:58:11.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.528 -07 000000608 INF: FPGA: Recv ZSGSRD 30624
17-03-17 19:58:11.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.538 -07 000000486 INF: FPGA: Recv ZSGSRD 30628
17-03-17 19:58:11.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:11.548 -07 000000448 INF: FPGA: Recv ZSGSRD 30623
17-03-17 19:58:11.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.558 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:11.558 -07 000000541 INF: FPGA: Recv ZPIEZORD 26631
17-03-17 19:58:11.568 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -8.8 V.
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30624 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30624 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30616 (-136.2 uncal um), Max = 30630 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30624, posNoise = 6, negNoise = 8
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: After move to -0.137057, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:58:11.568 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:11.618 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:58:11.618 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:11.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:11.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:11.618 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:11.618 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:11.618 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:11.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:11.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:58:11.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:11.628 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:11.628 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:11.638 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:58:11.638 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:58:11.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:11.678 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:11.738 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:11.878 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:11.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:11.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:11.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:11.918 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:11.918 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:11.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:58:11.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:58:11.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:11.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:11.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:58:12.028 -07 000000547 INF: Autofocus start
17-03-17 19:58:12.028 -07 000000547 INF: MeasureProfile start
17-03-17 19:58:12.028 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:12.028 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:12.038 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:12.038 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:12.038 -07 000000547 INF: MeasureProfile done
17-03-17 19:58:12.038 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:58:12.038 -07 000000547 INF: Autofocus finished
17-03-17 19:58:12.238 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:12.238 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:12.238 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137058424640423. ----------
17-03-17 19:58:12.238 -07 000000610 INF: Cycle	32	Tile	13	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:12.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28447, sync = True, waitForSettling = True)
17-03-17 19:58:12.248 -07 000000610 INF: Z Motor: Moving to -0.130222 mm, started at -0.137058 mm, distance = 6.84 um
17-03-17 19:58:12.248 -07 000000610 INF: FPGA: Xmit ZDACW 28447\n [Z Motor]
17-03-17 19:58:12.248 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:58:12.258 -07 000000610 INF: FPGA: 'ZDACW 28447' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:12.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:12.258 -07 000000478 INF: FPGA: Recv ZDACR 28447
17-03-17 19:58:12.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29563
17-03-17 19:58:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:12.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.428 -07 000000459 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:58:12.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:58:12.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.448 -07 000000547 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:58:12.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.458 -07 000000415 INF: FPGA: Recv ZSGSRD 29563
17-03-17 19:58:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.468 -07 000000431 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:58:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:58:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29561
17-03-17 19:58:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.498 -07 000000547 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:58:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:12.508 -07 000000415 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:58:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:12.518 -07 000000593 INF: FPGA: Recv ZPIEZORD 25255
17-03-17 19:58:12.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:12.528 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.5 V.
17-03-17 19:58:12.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29557 (-129.4 uncal um), Max = 29565 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:58:12.528 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 4, negNoise = 4
17-03-17 19:58:12.528 -07 000000610 INF: Z Motor: After move to -0.130222, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:12.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:58:12.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:12.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:12.528 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:12.528 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:12.528 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:12.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:12.528 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:12.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:12.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:12.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:12.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:12.528 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:12.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:58:12.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:12.538 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:12.538 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:12.548 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:58:12.548 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:12.548 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:58:12.548 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:12.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28624 150\n [Camera]
17-03-17 19:58:12.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:13.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:13.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:13.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:13.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:13.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:13.158 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:13.158 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:13.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:13.158 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:13.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:13.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28624 792
17-03-17 19:58:13.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:13.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:58:13.528 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:58:13.528 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:13.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:58:13.538 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:58:13.538 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:13.538 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:58:13.538 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:58:13.538 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:13.548 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:58:13.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:13.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:13.698 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:13.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:13.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:13.698 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:13.698 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:13.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:58:13.708 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:13.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:58:13.888 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:13.888 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:13.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28624 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:58:13.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:13.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130229487133731. ------
17-03-17 19:58:13.888 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:13.888 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13665 mm
17-03-17 19:58:13.888 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:13.888 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:58:13.888 -07 000000478 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:58:13.888 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:13.898 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:13.898 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29850, sync = True, waitForSettling = False)
17-03-17 19:58:14.008 -07 000000486 INF: Z Motor: Moving to -0.136645 mm, started at -0.130229 mm, distance = -6.42 um
17-03-17 19:58:14.008 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:14.008 -07 000000431 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:58:14.018 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 19:58:14.018 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:14.018 -07 000000486 INF: FPGA: Xmit ZDACW 29850\n [Z Motor]
17-03-17 19:58:14.018 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:58:14.018 -07 000000478 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:14.018 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:58:14.028 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:14.028 -07 000000486 INF: FPGA: 'ZDACW 29850' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:58:14.038 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:14.048 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:14.048 -07 000000448 INF: FPGA: Recv ZDACR 29850
17-03-17 19:58:14.058 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:14.058 -07 000000486 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:58:14.088 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:58:14.088 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:58:14.088 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:14.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:14.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:58:14.088 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:58:14.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:14.098 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:14.098 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:58:14.098 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:58:14.228 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:14.228 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 19:58:14.408 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:58:14.408 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:58:14.448 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:14.448 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:58:14.458 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:14.458 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:14.458 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:58:14.458 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 19:58:14.848 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 3.969015,
17-03-17 19:58:15.408 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:15.408 -07 000000475 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:58:15.418 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.418 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:15.438 -07 000000478 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:15.438 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:58:15.438 -07 000000478 INF: Y Motor: Moved to 70.6890 after 1543 ms (table move)
17-03-17 19:58:15.438 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136645 mm (DAC = 29850)
17-03-17 19:58:15.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.438 -07 000000482 INF: FPGA: Recv ZSGSRD 30562
17-03-17 19:58:15.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:15.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.448 -07 000000608 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:58:15.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:58:15.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.468 -07 000000475 INF: FPGA: Recv ZSGSRD 30566
17-03-17 19:58:15.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.478 -07 000000462 INF: FPGA: Recv ZSGSRD 30559
17-03-17 19:58:15.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30562
17-03-17 19:58:15.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.498 -07 000000626 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:58:15.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:58:15.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.518 -07 000000459 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:58:15.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:15.528 -07 000000502 INF: FPGA: Recv ZSGSRD 30556
17-03-17 19:58:15.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.538 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:15.538 -07 000000482 INF: FPGA: Recv ZPIEZORD 26596
17-03-17 19:58:15.548 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.7 V.
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30560 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30560 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30556 (-135.8 uncal um), Max = 30566 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30560, posNoise = 6, negNoise = 4
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: After move to -0.136645, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:58:15.548 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:15.598 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 19:58:15.598 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:15.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:15.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:15.598 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:15.598 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:15.598 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:15.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:15.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:15.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:15.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:15.598 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:15.608 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:58:15.608 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:58:15.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:15.658 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:15.858 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:15.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:15.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:15.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:15.898 -07 000000012 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:58:15.898 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:15.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 19:58:15.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:58:15.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:15.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:15.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:58:15.998 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:15.998 -07 000000486 INF: Autofocus start
17-03-17 19:58:15.998 -07 000000486 INF: MeasureProfile start
17-03-17 19:58:15.998 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:16.008 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:16.008 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:16.008 -07 000000486 INF: MeasureProfile done
17-03-17 19:58:16.008 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:58:16.008 -07 000000486 INF: Autofocus finished
17-03-17 19:58:16.208 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:16.208 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:16.208 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.13664727506335. ----------
17-03-17 19:58:16.208 -07 000000610 INF: Cycle	32	Tile	14	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:16.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28345, sync = True, waitForSettling = True)
17-03-17 19:58:16.218 -07 000000610 INF: Z Motor: Moving to -0.129755 mm, started at -0.136647 mm, distance = 6.89 um
17-03-17 19:58:16.218 -07 000000610 INF: FPGA: Xmit ZDACW 28345\n [Z Motor]
17-03-17 19:58:16.218 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:58:16.228 -07 000000610 INF: FPGA: 'ZDACW 28345' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:16.228 -07 000000415 INF: FPGA: Recv ZDACR 28345
17-03-17 19:58:16.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.388 -07 000000501 INF: FPGA: Recv ZSGSRD 29489
17-03-17 19:58:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.398 -07 000000480 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:58:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.408 -07 000000486 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:58:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29485
17-03-17 19:58:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.428 -07 000000482 INF: FPGA: Recv ZSGSRD 29492
17-03-17 19:58:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.438 -07 000000431 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:58:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.448 -07 000000547 INF: FPGA: Recv ZSGSRD 29489
17-03-17 19:58:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.458 -07 000000433 INF: FPGA: Recv ZSGSRD 29487
17-03-17 19:58:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.468 -07 000000626 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:58:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:16.478 -07 000000482 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:58:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:16.488 -07 000000431 INF: FPGA: Recv ZPIEZORD 25186
17-03-17 19:58:16.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:16.498 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.4 V.
17-03-17 19:58:16.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29488 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29485 (-129.0 uncal um), Max = 29492 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:58:16.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 4, negNoise = 3
17-03-17 19:58:16.498 -07 000000610 INF: Z Motor: After move to -0.129755, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:16.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:58:16.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:16.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:16.498 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:16.498 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:16.498 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:16.498 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:16.498 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:16.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:16.498 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:16.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:16.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:16.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:16.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:16.508 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:16.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:58:16.508 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:16.518 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:58:16.518 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:58:16.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:58:16.518 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:58:16.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28522 150\n [Camera]
17-03-17 19:58:16.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:16.738 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:17.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:17.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:17.128 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:17.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:17.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:17.128 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:17.128 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:17.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:17.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:17.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:17.318 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28522 792
17-03-17 19:58:17.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:17.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:58:17.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:58:17.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:17.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:58:17.528 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:58:17.528 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:17.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:17.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:58:17.528 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:17.538 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:58:17.668 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 19:58:17.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 19:58:17.668 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:17.668 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:17.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:58:17.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 19:58:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 19:58:17.668 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:17.668 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:17.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:58:17.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:58:17.858 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:17.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28522 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:58:17.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:17.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129760519647382. ------
17-03-17 19:58:17.858 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:17.858 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13635 mm
17-03-17 19:58:17.858 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:17.858 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:58:17.858 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:58:17.868 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:17.868 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:17.868 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-17 19:58:17.868 -07 000000482 INF: Z Motor: Moving to -0.136352 mm, started at -0.129761 mm, distance = -6.59 um
17-03-17 19:58:17.868 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:17.868 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:58:17.878 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:17.878 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:17.878 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:17.878 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:58:17.878 -07 000000482 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-17 19:58:17.878 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:58:17.888 -07 000000482 INF: FPGA: 'ZDACW 29786' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:58:17.888 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:17.898 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:17.908 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:17.908 -07 000000433 INF: FPGA: Recv ZDACR 29786
17-03-17 19:58:17.918 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:17.918 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:58:18.068 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:58:18.068 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:58:18.068 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:18.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:58:18.068 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:58:18.068 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:18.078 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:18.078 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:58:18.078 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:18.078 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:58:18.088 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:18.088 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:58:18.268 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:58:18.268 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:58:18.308 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:18.308 -07 000000431 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:58:18.318 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:18.318 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:18.318 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:58:18.318 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:58:19.268 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:19.268 -07 000000012 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:58:19.278 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:19.278 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:19.298 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:19.298 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:58:19.298 -07 000000462 INF: Y Motor: Moved to 71.5195 after 1434 ms (table move)
17-03-17 19:58:19.298 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-17 19:58:19.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30525
17-03-17 19:58:19.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:19.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.308 -07 000000501 INF: FPGA: Recv ZSGSRD 30510
17-03-17 19:58:19.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.318 -07 000000433 INF: FPGA: Recv ZSGSRD 30509
17-03-17 19:58:19.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.328 -07 000000012 INF: FPGA: Recv ZSGSRD 30520
17-03-17 19:58:19.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.338 -07 000000541 INF: FPGA: Recv ZSGSRD 30521
17-03-17 19:58:19.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.348 -07 000000480 INF: FPGA: Recv ZSGSRD 30519
17-03-17 19:58:19.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.358 -07 000000459 INF: FPGA: Recv ZSGSRD 30513
17-03-17 19:58:19.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.368 -07 000000608 INF: FPGA: Recv ZSGSRD 30508
17-03-17 19:58:19.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.378 -07 000000012 INF: FPGA: Recv ZSGSRD 30512
17-03-17 19:58:19.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:19.388 -07 000000462 INF: FPGA: Recv ZSGSRD 30512
17-03-17 19:58:19.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.398 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:19.398 -07 000000482 INF: FPGA: Recv ZPIEZORD 26508
17-03-17 19:58:19.408 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.8 V.
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30515 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30508 (-135.5 uncal um), Max = 30525 (-135.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30515, posNoise = 10, negNoise = 7
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: After move to -0.136352, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:58:19.408 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:19.458 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:58:19.458 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:19.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:19.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:19.458 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:19.458 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:19.458 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:19.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:19.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:19.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:19.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:19.468 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:19.478 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:58:19.478 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:58:19.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:19.528 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:19.728 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:19.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:19.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:19.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:58:19.768 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:19.768 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:19.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:58:19.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:58:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:58:19.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:58:19.868 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:19.868 -07 000000480 INF: Autofocus start
17-03-17 19:58:19.868 -07 000000480 INF: MeasureProfile start
17-03-17 19:58:19.868 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:19.878 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:19.878 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:19.878 -07 000000480 INF: MeasureProfile done
17-03-17 19:58:19.878 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:58:19.878 -07 000000480 INF: Autofocus finished
17-03-17 19:58:20.078 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:20.078 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:20.078 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136358185516971. ----------
17-03-17 19:58:20.078 -07 000000610 INF: Cycle	32	Tile	15	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:20.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28327, sync = True, waitForSettling = True)
17-03-17 19:58:20.088 -07 000000610 INF: Z Motor: Moving to -0.129673 mm, started at -0.136358 mm, distance = 6.69 um
17-03-17 19:58:20.088 -07 000000610 INF: FPGA: Xmit ZDACW 28327\n [Z Motor]
17-03-17 19:58:20.088 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:58:20.098 -07 000000610 INF: FPGA: 'ZDACW 28327' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:20.098 -07 000000476 INF: FPGA: Recv ZDACR 28327
17-03-17 19:58:20.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:20.208 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.003063,
17-03-17 19:58:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.258 -07 000000012 INF: FPGA: Recv ZSGSRD 29484
17-03-17 19:58:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29473
17-03-17 19:58:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.278 -07 000000502 INF: FPGA: Recv ZSGSRD 29478
17-03-17 19:58:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29472
17-03-17 19:58:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:58:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.308 -07 000000593 INF: FPGA: Recv ZSGSRD 29479
17-03-17 19:58:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.318 -07 000000541 INF: FPGA: Recv ZSGSRD 29468
17-03-17 19:58:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29479
17-03-17 19:58:20.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.338 -07 000000501 INF: FPGA: Recv ZSGSRD 29479
17-03-17 19:58:20.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:20.348 -07 000000541 INF: FPGA: Recv ZSGSRD 29473
17-03-17 19:58:20.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:20.358 -07 000000448 INF: FPGA: Recv ZPIEZORD 25149
17-03-17 19:58:20.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:20.368 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.5 V.
17-03-17 19:58:20.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29475 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29484 (-129.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:58:20.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29475, posNoise = 9, negNoise = 7
17-03-17 19:58:20.368 -07 000000610 INF: Z Motor: After move to -0.129673, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:20.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:58:20.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:20.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:20.368 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:20.368 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:20.368 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:20.368 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:20.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:20.368 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:20.368 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:20.368 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:20.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:20.368 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:20.368 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:20.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:20.378 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:20.378 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:20.378 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:58:20.378 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:20.378 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:58:20.378 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:20.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28504 150\n [Camera]
17-03-17 19:58:20.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:20.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:20.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:20.998 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:20.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1147520784, 0x0, 391868352) start.
17-03-17 19:58:20.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:20.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:20.998 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:20.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:20.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:58:21.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28504 792
17-03-17 19:58:21.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:21.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:58:21.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:58:21.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:21.378 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:21.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1147520784, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:58:21.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:58:21.378 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:21.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:21.388 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:58:21.388 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:58:21.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:21.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:21.538 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:21.538 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:21.538 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:58:21.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:21.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:21.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:21.538 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:21.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:58:21.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:58:21.728 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:21.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28504 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:58:21.848 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:21.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:21.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129677004889539. ------
17-03-17 19:58:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:21.848 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:21.848 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13556 mm
17-03-17 19:58:21.848 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:21.848 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:58:21.848 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:58:21.848 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29613, sync = True, waitForSettling = False)
17-03-17 19:58:21.848 -07 000000462 INF: Z Motor: Moving to -0.135560 mm, started at -0.129677 mm, distance = -5.88 um
17-03-17 19:58:21.848 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:21.858 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:21.858 -07 000000462 INF: FPGA: Xmit ZDACW 29613\n [Z Motor]
17-03-17 19:58:21.858 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:58:21.868 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:21.868 -07 000000462 INF: FPGA: 'ZDACW 29613' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:21.868 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:58:21.878 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:58:21.878 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:21.878 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:21.878 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:58:21.878 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:21.888 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:21.888 -07 000000486 INF: FPGA: Recv ZDACR 29613
17-03-17 19:58:21.898 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:21.898 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:21.898 -07 000000462 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:58:21.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:58:21.918 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:58:21.918 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:21.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:58:21.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:58:21.918 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:21.928 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:21.928 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:58:21.928 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:58:21.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:58:22.078 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:22.078 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:58:22.268 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:58:22.268 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:58:22.308 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:22.308 -07 000000448 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:58:22.318 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:22.318 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:22.318 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:58:22.318 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:58:23.268 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:23.268 -07 000000482 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:58:23.278 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:23.278 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:23.298 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:23.298 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:58:23.298 -07 000000459 INF: Y Motor: Moved to 72.3496 after 1444 ms (table move)
17-03-17 19:58:23.298 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135560 mm (DAC = 29613)
17-03-17 19:58:23.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.298 -07 000000593 INF: FPGA: Recv ZSGSRD 30398
17-03-17 19:58:23.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:58:23.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30392
17-03-17 19:58:23.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:23.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30388
17-03-17 19:58:23.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.328 -07 000000541 INF: FPGA: Recv ZSGSRD 30389
17-03-17 19:58:23.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.338 -07 000000551 INF: FPGA: Recv ZSGSRD 30400
17-03-17 19:58:23.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.348 -07 000000462 INF: FPGA: Recv ZSGSRD 30393
17-03-17 19:58:23.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.358 -07 000000482 INF: FPGA: Recv ZSGSRD 30390
17-03-17 19:58:23.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.368 -07 000000626 INF: FPGA: Recv ZSGSRD 30386
17-03-17 19:58:23.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.378 -07 000000593 INF: FPGA: Recv ZSGSRD 30391
17-03-17 19:58:23.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:23.388 -07 000000012 INF: FPGA: Recv ZSGSRD 30397
17-03-17 19:58:23.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.398 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:23.398 -07 000000486 INF: FPGA: Recv ZPIEZORD 26396
17-03-17 19:58:23.408 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -8.8 V.
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30392 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30392 (-134.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30386 (-134.7 uncal um), Max = 30400 (-134.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30392, posNoise = 8, negNoise = 6
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: After move to -0.135560, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:58:23.408 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:23.458 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:58:23.458 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:23.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:23.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:23.458 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:23.458 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:23.458 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:23.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:23.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:58:23.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:23.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:23.468 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:23.468 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:58:23.468 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:58:23.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:23.518 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:23.718 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:23.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:23.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:23.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:23.758 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:23.758 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:23.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:58:23.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:58:23.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:23.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:23.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:58:23.858 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:23.858 -07 000000478 INF: Autofocus start
17-03-17 19:58:23.858 -07 000000478 INF: MeasureProfile start
17-03-17 19:58:23.868 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:23.868 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:58:23.868 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:23.868 -07 000000478 INF: MeasureProfile done
17-03-17 19:58:23.868 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:58:23.868 -07 000000478 INF: Autofocus finished
17-03-17 19:58:24.068 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:24.068 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:58:24.068 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135568007423534. ----------
17-03-17 19:58:24.078 -07 000000610 INF: Cycle	32	Tile	16	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:24.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28137, sync = True, waitForSettling = True)
17-03-17 19:58:24.078 -07 000000610 INF: Z Motor: Moving to -0.128803 mm, started at -0.135568 mm, distance = 6.77 um
17-03-17 19:58:24.078 -07 000000610 INF: FPGA: Xmit ZDACW 28137\n [Z Motor]
17-03-17 19:58:24.078 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:58:24.088 -07 000000610 INF: FPGA: 'ZDACW 28137' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:24.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:24.088 -07 000000459 INF: FPGA: Recv ZDACR 28137
17-03-17 19:58:24.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:58:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:24.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:58:24.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.268 -07 000000476 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:58:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.278 -07 000000433 INF: FPGA: Recv ZSGSRD 29342
17-03-17 19:58:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.288 -07 000000476 INF: FPGA: Recv ZSGSRD 29337
17-03-17 19:58:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.298 -07 000000462 INF: FPGA: Recv ZSGSRD 29349
17-03-17 19:58:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29340
17-03-17 19:58:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.318 -07 000000502 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:58:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.328 -07 000000448 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:58:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:24.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29336
17-03-17 19:58:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:24.348 -07 000000480 INF: FPGA: Recv ZPIEZORD 24981
17-03-17 19:58:24.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:24.358 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.6 V.
17-03-17 19:58:24.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29340 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29339 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29336 (-128.0 uncal um), Max = 29349 (-128.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:58:24.358 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29340, posNoise = 9, negNoise = 4
17-03-17 19:58:24.358 -07 000000610 INF: Z Motor: After move to -0.128803, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:24.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:58:24.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:24.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:24.358 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:24.358 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:24.358 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:24.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:24.358 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:24.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:24.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:24.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:24.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:24.358 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:24.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:24.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:24.368 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:24.368 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:24.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:58:24.378 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:58:24.378 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:58:24.378 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:58:24.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28314 150\n [Camera]
17-03-17 19:58:24.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:24.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:24.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:24.988 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:24.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:24.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:24.998 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:24.998 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:24.998 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:24.998 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:24.998 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:25.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28314 792
17-03-17 19:58:25.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:25.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:58:25.388 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:58:25.388 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:25.388 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:58:25.388 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:58:25.388 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:25.388 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:25.388 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:58:25.388 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:25.398 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:58:25.528 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:25.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:25.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:25.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:25.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:25.538 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:25.538 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:25.538 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:58:25.538 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:25.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:58:25.568 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.008536,
17-03-17 19:58:25.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:25.718 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:25.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28314 150' command took 2 ms to send, 1328 ms to get response, and 1337 ms overall
17-03-17 19:58:25.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:25.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128809736250401. ------
17-03-17 19:58:25.838 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13541 mm
17-03-17 19:58:25.838 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:25.838 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:25.838 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:58:25.838 -07 000000593 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:58:25.838 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:25.848 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:25.848 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:25.848 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29580, sync = True, waitForSettling = False)
17-03-17 19:58:25.848 -07 000000501 INF: Z Motor: Moving to -0.135409 mm, started at -0.128810 mm, distance = -6.60 um
17-03-17 19:58:25.848 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:58:25.858 -07 000000501 INF: FPGA: Xmit ZDACW 29580\n [Z Motor]
17-03-17 19:58:25.858 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:25.858 -07 000000593 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:25.858 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:58:25.858 -07 000000593 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:25.858 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:58:25.868 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:25.868 -07 000000501 INF: FPGA: 'ZDACW 29580' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:58:25.878 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:25.888 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:25.888 -07 000000433 INF: FPGA: Recv ZDACR 29580
17-03-17 19:58:25.898 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:25.898 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:58:25.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:58:25.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:58:25.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:25.918 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:25.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:58:25.928 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:58:25.928 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:25.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:58:25.928 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:25.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:58:26.068 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:26.068 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:58:26.248 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:58:26.248 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:58:26.288 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:26.288 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:58:26.298 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:58:26.298 -07 000000593 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:26.298 -07 000000593 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:58:26.298 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 19:58:26.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:27.248 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:27.248 -07 000000476 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:58:27.258 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:27.258 -07 000000593 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:27.278 -07 000000593 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:27.278 -07 000000593 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:58:27.278 -07 000000593 INF: Y Motor: Moved to 73.1763 after 1432 ms (table move)
17-03-17 19:58:27.278 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135409 mm (DAC = 29580)
17-03-17 19:58:27.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.278 -07 000000608 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:58:27.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:27.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30370
17-03-17 19:58:27.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.298 -07 000000475 INF: FPGA: Recv ZSGSRD 30363
17-03-17 19:58:27.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.308 -07 000000431 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:58:27.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.318 -07 000000448 INF: FPGA: Recv ZSGSRD 30375
17-03-17 19:58:27.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.328 -07 000000433 INF: FPGA: Recv ZSGSRD 30371
17-03-17 19:58:27.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30371
17-03-17 19:58:27.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.348 -07 000000541 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:58:27.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.358 -07 000000502 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:58:27.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:27.368 -07 000000478 INF: FPGA: Recv ZSGSRD 30363
17-03-17 19:58:27.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.378 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:27.378 -07 000000459 INF: FPGA: Recv ZPIEZORD 26392
17-03-17 19:58:27.388 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -8.8 V.
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30369 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30369 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30363 (-134.6 uncal um), Max = 30375 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30369, posNoise = 6, negNoise = 6
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: After move to -0.135409, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:58:27.388 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:27.438 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:58:27.438 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:27.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:27.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:27.438 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:27.438 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:27.438 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:27.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:27.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:27.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:27.448 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:27.448 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:27.458 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:58:27.458 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:58:27.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:27.508 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:27.708 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:27.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:27.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:27.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:27.748 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:27.748 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:27.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:58:27.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:58:27.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:27.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:58:27.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:58:27.848 -07 000000433 INF: Autofocus start
17-03-17 19:58:27.848 -07 000000433 INF: MeasureProfile start
17-03-17 19:58:27.848 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:27.858 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:27.858 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:27.858 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:27.868 -07 000000433 INF: MeasureProfile done
17-03-17 19:58:27.868 -07 000000433 INF: X=-9  Z correction [um]=-0.04721335
17-03-17 19:58:27.868 -07 000000433 INF: Autofocus finished
17-03-17 19:58:28.058 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:28.058 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:28.058 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135420250544274. ----------
17-03-17 19:58:28.058 -07 000000610 INF: Cycle	32	Tile	17	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:28.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28082, sync = True, waitForSettling = True)
17-03-17 19:58:28.068 -07 000000610 INF: Z Motor: Moving to -0.128551 mm, started at -0.135420 mm, distance = 6.87 um
17-03-17 19:58:28.068 -07 000000610 INF: FPGA: Xmit ZDACW 28082\n [Z Motor]
17-03-17 19:58:28.068 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:58:28.078 -07 000000610 INF: FPGA: 'ZDACW 28082' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:58:28.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:28.078 -07 000000541 INF: FPGA: Recv ZDACR 28082
17-03-17 19:58:28.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29306
17-03-17 19:58:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.248 -07 000000448 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:58:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:58:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29303
17-03-17 19:58:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:58:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.288 -07 000000626 INF: FPGA: Recv ZSGSRD 29298
17-03-17 19:58:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.298 -07 000000459 INF: FPGA: Recv ZSGSRD 29302
17-03-17 19:58:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29299
17-03-17 19:58:28.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29305
17-03-17 19:58:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:28.328 -07 000000608 INF: FPGA: Recv ZSGSRD 29300
17-03-17 19:58:28.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:28.338 -07 000000626 INF: FPGA: Recv ZPIEZORD 24972
17-03-17 19:58:28.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:28.348 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 19:58:28.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29301 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29298 (-127.8 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:58:28.348 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 4, negNoise = 4
17-03-17 19:58:28.348 -07 000000610 INF: Z Motor: After move to -0.128551, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:28.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:58:28.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:28.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:28.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:28.348 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:28.348 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:28.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:28.348 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:28.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:28.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:28.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:28.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:28.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:28.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:28.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:28.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:28.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:28.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:58:28.368 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:28.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:58:28.368 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:28.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28259 150\n [Camera]
17-03-17 19:58:28.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:28.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:28.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:28.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:28.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:28.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:28.978 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:28.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:28.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:28.978 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:28.978 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:29.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 792
17-03-17 19:58:29.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:29.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:58:29.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:58:29.368 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:58:29.368 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:29.368 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:58:29.368 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:29.368 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:58:29.368 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:29.368 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:58:29.378 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:58:29.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:29.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:29.518 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:29.518 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:29.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:58:29.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:29.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:29.518 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:29.518 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:29.518 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:58:29.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:58:29.708 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:29.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28259 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 19:58:29.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:29.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128565616189015. ------
17-03-17 19:58:29.708 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:29.708 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13500 mm
17-03-17 19:58:29.708 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:29.718 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:29.718 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:58:29.718 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:58:29.718 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:58:29.718 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29490, sync = True, waitForSettling = False)
17-03-17 19:58:29.718 -07 000000448 INF: Z Motor: Moving to -0.134997 mm, started at -0.128566 mm, distance = -6.43 um
17-03-17 19:58:29.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:29.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:29.728 -07 000000486 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:58:29.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:58:29.738 -07 000000448 INF: FPGA: Xmit ZDACW 29490\n [Z Motor]
17-03-17 19:58:29.738 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:29.738 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:29.738 -07 000000475 INF: Y Motor: Moving 1354 steps-33
17-03-17 19:58:29.738 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:58:29.748 -07 000000448 INF: FPGA: 'ZDACW 29490' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:58:29.748 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:29.748 -07 000000478 INF: FPGA: Recv ZDACR 29490
17-03-17 19:58:29.758 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:29.758 -07 000000448 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:58:29.758 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:29.918 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:29.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 19:58:29.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:58:29.918 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:58:29.918 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:29.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:58:29.918 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:58:29.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:29.928 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:29.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:58:29.928 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:58:29.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:58:30.128 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:58:30.128 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:58:30.188 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:30.188 -07 000000431 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:58:30.198 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:30.198 -07 000000475 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:30.198 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:58:30.198 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 19:58:30.928 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.014009,
17-03-17 19:58:31.148 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:31.148 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:58:31.158 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:31.158 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:31.168 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:31.168 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:58:31.168 -07 000000475 INF: Y Motor: Moved to 74.0083 after 1455 ms (table move)
17-03-17 19:58:31.178 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134997 mm (DAC = 29490)
17-03-17 19:58:31.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30313
17-03-17 19:58:31.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:58:31.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.198 -07 000000476 INF: FPGA: Recv ZSGSRD 30300
17-03-17 19:58:31.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.208 -07 000000593 INF: FPGA: Recv ZSGSRD 30301
17-03-17 19:58:31.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.218 -07 000000551 INF: FPGA: Recv ZSGSRD 30301
17-03-17 19:58:31.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.228 -07 000000626 INF: FPGA: Recv ZSGSRD 30302
17-03-17 19:58:31.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.238 -07 000000459 INF: FPGA: Recv ZSGSRD 30303
17-03-17 19:58:31.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 8 ms overall
17-03-17 19:58:31.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.248 -07 000000478 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:58:31.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:58:31.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.258 -07 000000462 INF: FPGA: Recv ZSGSRD 30312
17-03-17 19:58:31.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:31.268 -07 000000608 INF: FPGA: Recv ZSGSRD 30308
17-03-17 19:58:31.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.278 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:31.278 -07 000000476 INF: FPGA: Recv ZPIEZORD 26291
17-03-17 19:58:31.288 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.8 V.
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30306 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30300 (-134.2 uncal um), Max = 30313 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30306, posNoise = 7, negNoise = 6
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: After move to -0.134997, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: Settle wait time = 1458 ms, measure time = 111 ms (allowed 150 ms), total time = 1569 ms
17-03-17 19:58:31.288 -07 000000415 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:31.328 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 19:58:31.328 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:31.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:31.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:31.328 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:31.328 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:31.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:31.328 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:31.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:31.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:31.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:31.328 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:31.338 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:58:31.338 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:58:31.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:31.388 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:31.588 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:31.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:31.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:31.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) start.
17-03-17 19:58:31.628 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:31.628 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:31.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:58:31.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1072270952, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:58:31.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:31.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:58:31.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:58:31.728 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:31.728 -07 000000551 INF: Autofocus start
17-03-17 19:58:31.728 -07 000000551 INF: MeasureProfile start
17-03-17 19:58:31.738 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:31.738 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:58:31.738 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:31.738 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:31.748 -07 000000551 INF: MeasureProfile done
17-03-17 19:58:31.748 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:58:31.748 -07 000000551 INF: Autofocus finished
17-03-17 19:58:31.938 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:31.938 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:58:31.938 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135015525179343. ----------
17-03-17 19:58:31.948 -07 000000610 INF: Cycle	32	Tile	18	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:31.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27985, sync = True, waitForSettling = True)
17-03-17 19:58:31.948 -07 000000610 INF: Z Motor: Moving to -0.128107 mm, started at -0.135016 mm, distance = 6.91 um
17-03-17 19:58:31.948 -07 000000610 INF: FPGA: Xmit ZDACW 27985\n [Z Motor]
17-03-17 19:58:31.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:58:31.958 -07 000000610 INF: FPGA: 'ZDACW 27985' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:58:31.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:31.958 -07 000000433 INF: FPGA: Recv ZDACR 27985
17-03-17 19:58:31.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:31.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29233
17-03-17 19:58:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29231
17-03-17 19:58:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:58:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:58:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.158 -07 000000433 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:58:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29230
17-03-17 19:58:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29231
17-03-17 19:58:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29240
17-03-17 19:58:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.198 -07 000000415 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:58:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:32.208 -07 000000593 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:58:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:32.218 -07 000000448 INF: FPGA: Recv ZPIEZORD 24905
17-03-17 19:58:32.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:32.228 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.5 V.
17-03-17 19:58:32.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29229 (-127.3 uncal um), Max = 29240 (-127.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:58:32.228 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 8, negNoise = 3
17-03-17 19:58:32.228 -07 000000610 INF: Z Motor: After move to -0.128107, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:32.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:58:32.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:32.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:32.228 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:32.228 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:32.228 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:32.228 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:32.228 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:32.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:32.228 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:58:32.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:32.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:32.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:32.238 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:32.238 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:32.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:32.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:32.248 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:58:32.248 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:32.248 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:58:32.248 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:58:32.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28162 150\n [Camera]
17-03-17 19:58:32.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:32.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:58:32.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:58:32.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:32.858 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:32.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:58:32.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:58:32.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:58:32.858 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:32.858 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:32.858 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:58:33.048 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28162 792
17-03-17 19:58:33.198 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:33.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:58:33.238 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:58:33.238 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:33.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:58:33.238 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:58:33.238 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:33.238 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:33.238 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:58:33.248 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:33.248 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:58:33.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:33.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:33.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:33.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:33.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:58:33.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:33.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:33.398 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:33.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:33.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:58:33.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:58:33.588 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:33.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28162 150' command took 2 ms to send, 1332 ms to get response, and 1337 ms overall
17-03-17 19:58:33.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:58:33.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128115921339091. ------
17-03-17 19:58:33.588 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:33.588 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13448 mm
17-03-17 19:58:33.588 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:58:33.598 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:58:33.598 -07 000000433 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:58:33.598 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:33.708 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 116 ms to get response, and 117 ms overall
17-03-17 19:58:33.708 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:33.708 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29377, sync = True, waitForSettling = False)
17-03-17 19:58:33.708 -07 000000448 INF: Z Motor: Moving to -0.134479 mm, started at -0.128116 mm, distance = -6.36 um
17-03-17 19:58:33.708 -07 000000541 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:58:33.718 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 19:58:33.718 -07 000000433 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:33.718 -07 000000433 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:58:33.718 -07 000000433 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:58:33.718 -07 000000448 INF: FPGA: Xmit ZDACW 29377\n [Z Motor]
17-03-17 19:58:33.718 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:58:33.728 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:58:33.728 -07 000000448 INF: FPGA: 'ZDACW 29377' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:58:33.738 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:58:33.748 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:33.748 -07 000000482 INF: FPGA: Recv ZDACR 29377
17-03-17 19:58:33.758 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:58:33.758 -07 000000448 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:58:33.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:58:33.798 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:58:33.798 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:33.798 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:58:33.798 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:58:33.798 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:33.798 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:33.798 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:58:33.798 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:58:33.808 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:58:33.928 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:58:33.928 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 19:58:34.108 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 19:58:34.108 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:58:34.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:34.138 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:58:34.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:34.148 -07 000000433 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:34.148 -07 000000433 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:58:34.148 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 19:58:35.098 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:35.098 -07 000000547 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:58:35.108 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.108 -07 000000433 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:35.118 -07 000000433 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:35.118 -07 000000433 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:58:35.118 -07 000000433 INF: Y Motor: Moved to 74.8325 after 1524 ms (table move)
17-03-17 19:58:35.118 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134479 mm (DAC = 29377)
17-03-17 19:58:35.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.128 -07 000000486 INF: FPGA: Recv ZSGSRD 30220
17-03-17 19:58:35.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:58:35.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30233
17-03-17 19:58:35.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:58:35.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30221
17-03-17 19:58:35.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:58:35.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:58:35.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.168 -07 000000433 INF: FPGA: Recv ZSGSRD 30218
17-03-17 19:58:35.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30229
17-03-17 19:58:35.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.198 -07 000000482 INF: FPGA: Recv ZSGSRD 30227
17-03-17 19:58:35.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:58:35.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.208 -07 000000608 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:58:35.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:35.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30227
17-03-17 19:58:35.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.228 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:35.228 -07 000000415 INF: FPGA: Recv ZPIEZORD 26217
17-03-17 19:58:35.238 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -8.8 V.
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30223 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30222 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30216 (-133.6 uncal um), Max = 30233 (-133.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30223, posNoise = 10, negNoise = 7
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: After move to -0.134479, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: Settle wait time = 1411 ms, measure time = 112 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:58:35.238 -07 000000012 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 19:58:35.278 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1681 ms
17-03-17 19:58:35.278 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:58:35.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:35.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:35.278 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:35.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:35.278 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:58:35.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:35.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:35.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:58:35.288 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:58:35.288 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:58:35.288 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:58:35.288 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:58:35.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:58:35.338 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:58:35.538 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:58:35.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:58:35.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:58:35.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:58:35.578 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:58:35.578 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 19:58:35.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:58:35.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:58:35.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:35.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:58:35.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:58:35.678 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:58:35.678 -07 000000012 INF: Autofocus start
17-03-17 19:58:35.678 -07 000000012 INF: MeasureProfile start
17-03-17 19:58:35.688 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:58:35.688 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:58:35.688 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:58:35.698 -07 000000012 INF: MeasureProfile done
17-03-17 19:58:35.698 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:58:35.698 -07 000000012 INF: Autofocus finished
17-03-17 19:58:35.888 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:58:35.888 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:58:35.888 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134482315571576. ----------
17-03-17 19:58:35.898 -07 000000610 INF: Cycle	32	Tile	19	Exposure Settings		A	407	G	196	T	196	C	407
17-03-17 19:58:35.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27884, sync = True, waitForSettling = True)
17-03-17 19:58:35.898 -07 000000610 INF: Z Motor: Moving to -0.127645 mm, started at -0.134482 mm, distance = 6.84 um
17-03-17 19:58:35.898 -07 000000610 INF: FPGA: Xmit ZDACW 27884\n [Z Motor]
17-03-17 19:58:35.898 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:58:35.908 -07 000000610 INF: FPGA: 'ZDACW 27884' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:58:35.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:58:35.908 -07 000000608 INF: FPGA: Recv ZDACR 27884
17-03-17 19:58:35.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:35.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:58:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29160
17-03-17 19:58:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.078 -07 000000501 INF: FPGA: Recv ZSGSRD 29156
17-03-17 19:58:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.088 -07 000000415 INF: FPGA: Recv ZSGSRD 29157
17-03-17 19:58:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.098 -07 000000608 INF: FPGA: Recv ZSGSRD 29156
17-03-17 19:58:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.108 -07 000000415 INF: FPGA: Recv ZSGSRD 29155
17-03-17 19:58:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29161
17-03-17 19:58:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29159
17-03-17 19:58:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.138 -07 000000502 INF: FPGA: Recv ZSGSRD 29163
17-03-17 19:58:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.148 -07 000000608 INF: FPGA: Recv ZSGSRD 29159
17-03-17 19:58:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:58:36.158 -07 000000547 INF: FPGA: Recv ZSGSRD 29159
17-03-17 19:58:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:58:36.168 -07 000000482 INF: FPGA: Recv ZPIEZORD 24820
17-03-17 19:58:36.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:58:36.178 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.255 V. Piezo Error = -9.5 V.
17-03-17 19:58:36.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29158 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29159 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29155 (-126.8 uncal um), Max = 29163 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:58:36.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29158, posNoise = 5, negNoise = 3
17-03-17 19:58:36.178 -07 000000610 INF: Z Motor: After move to -0.127645, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:58:36.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:58:36.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:58:36.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:58:36.178 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:58:36.178 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:58:36.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:58:36.178 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:58:36.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:58:36.178 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:58:36.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:58:36.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:58:36.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:58:36.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:58:36.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:58:36.188 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:58:36.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:58:36.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:58:36.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:58:36.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:58:36.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:58:36.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:58:36.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 407 407 196 196 28061 150\n [Camera]
17-03-17 19:58:36.288 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.014009,
17-03-17 19:58:36.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:58:36.738 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 31. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:36.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:58:36.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:58:36.808 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:36.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:58:36.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:58:36.808 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:36.818 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:36.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:58:36.818 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:36.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:58:36.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28061 792
17-03-17 19:58:37.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:58:37.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:58:37.198 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:58:37.198 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:37.198 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:58:37.198 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:58:37.198 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:37.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:37.198 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:58:37.198 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:58:37.208 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:58:37.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:58:37.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:58:37.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:58:37.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:58:37.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:58:37.348 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:58:37.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:58:37.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:58:37.358 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:58:37.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:58:37.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 19:58:37.538 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:58:37.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 407 407 196 196 28061 150' command took 2 ms to send, 1334 ms to get response, and 1339 ms overall
17-03-17 19:58:37.738 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:58:37.738 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:58:37.738 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:37.748 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:37.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:58:37.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:58:37.748 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:58:37.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:58:37.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:58:37.748 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:58:37.748 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:58:37.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 133 ms.
17-03-17 19:58:37.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:58:37.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:58:37.938 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 19:58:37.938 -07 000000610 INF: Imaging Cycle 32: ScanTilesCommand Cycle 32 time end. Duration was 158765 ms.
17-03-17 19:58:37.938 -07 000000610 INF: =================== Cycle #32 ===================
17-03-17 19:58:37.938 -07 000000610 INF: ===================  ===================
17-03-17 19:58:37.938 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:58:37.948 -07 000000486 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 19:58:37.948 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:58:37.948 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 19:58:37.948 -07 000000431 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 32, FrontChillerTemperature: 4.014009, FrontChillerHeatSinkTemperature: 0.371242, AmbientTemperature: 18.95355, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.74459, GreenLEDSensorTemperature: 26.19901, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 19:58:37.968 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.