17-03-17 19:58:38.018 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:58:38.018 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:58:38.018 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 19:58:38.018 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:38.028 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:58:38.028 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:58:38.028 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:38.028 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:58:38.028 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:58:38.028 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:58:38.138 -07 000000593 INF: FPGA: Recv YMVTO 154378 870
17-03-17 19:58:38.138 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 116 ms overall
17-03-17 19:58:38.138 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 19:58:38.138 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:58:38.138 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 19:58:41.138 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:58:41.138 -07 000000475 INF: FPGA: Recv YRDPOS 154378
17-03-17 19:58:41.148 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:58:41.148 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:58:41.158 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:58:41.158 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:58:41.168 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3141 ms
17-03-17 19:58:41.168 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 60° ===================
17-03-17 19:58:41.168 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:58:41.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:58:41.178 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:58:41.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 19:58:41.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:58:41.178 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 19:58:41.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:58:41.188 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 60° ===================
17-03-17 19:58:41.198 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:58:41.198 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:58:41.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:41.228 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:58:41.228 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:58:41.228 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:58:41.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:58:41.548 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:58:41.548 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:58:41.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:41.618 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:58:41.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:58:41.648 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.008536,
17-03-17 19:58:41.718 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:58:41.718 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:58:41.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:41.738 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:41.748 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:58:41.748 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:58:41.748 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:58:41.878 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:58:41.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:45.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:45.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:45.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:45.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:45.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:45.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:45.978 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:58:45.978 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:58:46.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:46.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:58:46.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:58:46.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:46.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:58:46.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:58:46.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:58:46.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:58:46.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:46.738 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=442, R2=457, Total=899. Warn if over 250 bubbles per interval.
17-03-17 19:58:46.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:46.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:46.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:58:46.918 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:58:47.008 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.005817,
17-03-17 19:58:48.138 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:58:48.138 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:58:48.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:48.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:58:48.158 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:58:48.158 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:58:48.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:58:48.308 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:58:48.308 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:58:48.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:48.378 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:58:48.378 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:58:48.478 -07 000000610 INF: =================== Cycle #33, Pumping Reagent CMS (4) ===================
17-03-17 19:58:48.478 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:58:48.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:48.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:58:48.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:58:48.508 -07 000000610 INF: =================== Cycle #33, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:58:48.638 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:58:48.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:50.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:50.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:50.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:50.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:50.598 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 19:58:50.598 -07 000000610 INF: =================== Cycle #33, Pumping Reagent CMS (4) ===================
17-03-17 19:58:50.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:50.758 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:58:50.758 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:58:50.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:50.918 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:58:50.918 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:58:50.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:58:51.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:58:51.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:51.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:51.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:51.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:58:51.538 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:58:51.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 19:58:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=444, R2=459, Total=903. Warn if over 250 bubbles per interval.
17-03-17 19:58:52.368 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.018051,
17-03-17 19:58:52.758 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:58:52.758 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:58:52.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:52.778 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:58:52.778 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:58:52.778 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:58:52.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:58:52.948 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:58:52.948 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:58:52.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:58:53.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:58:53.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:58:53.118 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:58:53.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:58:53.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:53.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:58:53.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:58:53.148 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:58:53.278 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:58:53.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:54.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:54.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:54.218 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:58:54.218 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:58:54.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:54.378 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:58:54.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:58:54.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:58:54.538 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:58:54.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:58:54.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:58:54.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:58:54.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:55.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:55.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:55.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:58:55.158 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:58:55.158 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:58:55.158 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:58:55.158 -07 000000541 INF: WaitCommand(10000) start
17-03-17 19:58:56.378 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:58:56.378 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 19:58:56.408 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:58:56.408 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:58:56.538 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:58:56.578 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:56.738 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:58:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=444, R2=459, Total=903. Warn if over 250 bubbles per interval.
17-03-17 19:58:57.728 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.012614,
17-03-17 19:58:58.108 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:58.138 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:58:58.558 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:58:58.588 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:58:58.588 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:58:58.588 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:58:58.588 -07 000000626 INF: ===================  ===================
17-03-17 19:59:01.738 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=444, R2=459, Total=903. Warn if over 250 bubbles per interval.
17-03-17 19:59:03.088 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.033041,
17-03-17 19:59:05.168 -07 000000541 INF: WaitCommand(10000) end
17-03-17 19:59:05.168 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:05.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:59:05.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:05.198 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:59:05.198 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:59:05.198 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:59:05.328 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:59:05.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:06.738 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=444, R2=459, Total=903. Warn if over 250 bubbles per interval.
17-03-17 19:59:08.448 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.011254,
17-03-17 19:59:11.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:11.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:11.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:59:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:11.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:11.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:12.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:12.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:12.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:12.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:13.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:13.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:13.328 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:59:13.328 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:13.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:13.488 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:59:13.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:59:13.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:13.648 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:59:13.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:59:13.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:59:13.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:59:13.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:13.808 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.996267,
17-03-17 19:59:14.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:14.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:14.268 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:59:14.268 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:59:15.488 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:59:15.488 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:59:15.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:59:15.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:59:15.508 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:59:15.508 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:59:15.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:59:15.738 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:59:15.738 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:59:15.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:59:15.808 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:59:15.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:59:15.908 -07 000000610 INF: =================== Cycle #33, Pumping Reagent IMT (1) ===================
17-03-17 19:59:15.908 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:59:15.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:15.938 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:59:15.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:59:15.938 -07 000000610 INF: =================== Cycle #33, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:59:16.068 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:59:16.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:16.738 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:17.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:17.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:17.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:18.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:18.028 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:59:18.028 -07 000000610 INF: =================== Cycle #33, Pumping Reagent IMT (1) ===================
17-03-17 19:59:18.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:18.188 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:59:18.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:59:18.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:18.348 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:59:18.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:59:18.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:59:18.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:59:18.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:18.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:18.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:18.968 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:59:18.968 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:59:19.168 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.004458,
17-03-17 19:59:20.188 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:59:20.188 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:59:20.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:59:20.208 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:59:20.208 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:59:20.208 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:59:20.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:59:20.458 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:59:20.458 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:59:20.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:59:20.528 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:59:20.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:59:20.628 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:20.628 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:59:20.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:20.658 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:59:20.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:59:20.658 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:59:20.788 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:59:20.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:21.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:21.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:21.728 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:59:21.728 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:21.738 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:21.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:21.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:21.888 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:59:21.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:59:22.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:22.048 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:59:22.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:59:22.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:59:22.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:59:22.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:22.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:22.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:22.668 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:59:22.668 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:59:22.668 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 65° ===================
17-03-17 19:59:22.668 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:59:22.668 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:59:22.668 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:59:22.678 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:59:22.678 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:59:22.678 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 19:59:22.688 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:59:22.688 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 65° ===================
17-03-17 19:59:22.688 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:59:22.688 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:59:24.528 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.983999,
17-03-17 19:59:26.738 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:29.888 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.994908,
17-03-17 19:59:31.738 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:35.248 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.975845,
17-03-17 19:59:36.738 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:40.608 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.009895,
17-03-17 19:59:41.738 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:45.968 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.999021,
17-03-17 19:59:46.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:51.328 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.986717,
17-03-17 19:59:51.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:52.698 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:59:52.698 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:52.698 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:59:52.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:52.828 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:59:52.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:59:52.828 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:59:52.958 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:59:52.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:53.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:53.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:53.568 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:59:53.568 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 19:59:53.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:53.728 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:59:53.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:59:53.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:59:53.888 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:59:53.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:59:53.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:59:54.018 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:59:54.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:54.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:54.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:54.508 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:59:54.508 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 19:59:54.508 -07 000000415 INF: WaitCommand(30000) start
17-03-17 19:59:54.508 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:59:54.508 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:59:55.728 -07 000000448 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:59:55.728 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 19:59:55.758 -07 000000448 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:59:55.758 -07 000000448 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:59:55.888 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:59:55.928 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:56.688 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.988112,
17-03-17 19:59:56.738 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:59:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 19:59:58.268 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:58.298 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:59:58.718 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 19:59:58.748 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:59:58.748 -07 000000448 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 19:59:58.748 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:59:58.748 -07 000000448 INF: ===================  ===================
17-03-17 20:00:01.738 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 20:00:02.048 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.989471,
17-03-17 20:00:06.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 20:00:07.408 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.014009,
17-03-17 20:00:11.738 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 20:00:12.768 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.997626,
17-03-17 20:00:16.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 20:00:18.128 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.026244,
17-03-17 20:00:21.738 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:21.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=445, R2=460, Total=905. Warn if over 250 bubbles per interval.
17-03-17 20:00:23.488 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.012614,
17-03-17 20:00:24.518 -07 000000415 INF: WaitCommand(30000) end
17-03-17 20:00:24.518 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 22° ===================
17-03-17 20:00:24.518 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:00:24.518 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:00:24.528 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:00:24.528 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:00:24.528 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:00:24.528 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 20:00:24.538 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:00:24.538 -07 000000610 INF: =================== Cycle #33, Flow Cell Temp 22° ===================
17-03-17 20:00:24.538 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 20:00:24.538 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 20:00:24.538 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:00:24.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:24.568 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:00:24.568 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:00:24.568 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:00:24.698 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:00:24.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:26.738 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:00:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:27.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:27.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:28.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:28.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:28.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:28.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:28.798 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:00:28.798 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 20:00:28.848 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.000345,
17-03-17 20:00:28.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:28.958 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:00:28.958 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:00:29.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:29.118 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:00:29.118 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:00:29.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:00:29.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:00:29.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:29.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:29.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:29.738 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:00:29.738 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 20:00:30.958 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:00:30.958 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:00:30.958 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:30.978 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:00:30.978 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:00:30.978 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:00:31.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:00:31.148 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:00:31.148 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:00:31.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:31.218 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:00:31.218 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:00:31.318 -07 000000610 INF: =================== Cycle #33, Pumping Reagent USM (2) ===================
17-03-17 20:00:31.318 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:00:31.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:31.348 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:00:31.348 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:00:31.348 -07 000000610 INF: =================== Cycle #33, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:00:31.478 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:00:31.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:31.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:32.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:32.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:33.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:33.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:33.438 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:00:33.438 -07 000000610 INF: =================== Cycle #33, Pumping Reagent USM (2) ===================
17-03-17 20:00:33.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:33.598 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:00:33.598 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:00:33.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:33.758 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:00:33.758 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:00:33.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:00:33.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:00:33.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:34.208 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.011254,
17-03-17 20:00:34.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:34.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:34.378 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:00:34.378 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 20:00:35.598 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:00:35.598 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:00:35.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:35.618 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:00:35.618 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:00:35.618 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:00:35.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:00:35.788 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:00:35.788 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:00:35.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:35.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:00:35.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:00:35.958 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 20:00:35.958 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:00:35.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:35.988 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:00:35.988 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:00:35.988 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:00:36.118 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:00:36.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:36.738 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:37.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:37.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:37.058 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 20:00:37.058 -07 000000610 INF: =================== Cycle #33, Pumping Reagent PR2 (3) ===================
17-03-17 20:00:37.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:37.218 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:00:37.218 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:00:37.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:00:37.378 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:00:37.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:00:37.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:00:37.508 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:00:37.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:37.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:37.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:37.998 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:00:37.998 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 20:00:37.998 -07 000000547 INF: WaitCommand(10000) start
17-03-17 20:00:37.998 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:00:37.998 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:00:39.218 -07 000000448 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:00:39.218 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 20:00:39.248 -07 000000448 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:00:39.248 -07 000000448 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:00:39.378 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:00:39.418 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:39.568 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.016692,
17-03-17 20:00:40.948 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:40.978 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:00:41.398 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:00:41.428 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:00:41.428 -07 000000448 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:00:41.428 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:00:41.428 -07 000000448 INF: ===================  ===================
17-03-17 20:00:41.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:44.928 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.989471,
17-03-17 20:00:46.738 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:46.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:48.008 -07 000000547 INF: WaitCommand(10000) end
17-03-17 20:00:48.008 -07 000000610 INF: =================== Cycle #33, Imaging ===================
17-03-17 20:00:48.008 -07 000000610 INF: Imaging Cycle 33: ScanTilesCommand Cycle 33 time start.
17-03-17 20:00:48.018 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:00:48.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:48.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:00:48.038 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:00:48.038 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:00:48.338 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:00:48.358 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:00:48.358 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:00:48.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:00:48.428 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:00:48.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:00:48.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:00:48.428 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:00:48.428 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:00:48.428 -07 000000431 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:00:48.428 -07 000000626 INF: FPGA: Recv EXLED1ON 
17-03-17 20:00:48.438 -07 000000431 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:00:48.438 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:00:48.438 -07 000000626 INF: FPGA: Recv EXLED1ADCR 23163
17-03-17 20:00:48.448 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:48.448 -07 000000431 INF: RedLED: Using Red data: Photodiode ADC 23163 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 20:00:48.448 -07 000000431 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:00:48.448 -07 000000593 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:00:48.458 -07 000000431 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:48.458 -07 000000431 INF: RedLED: LED was on for 20 ms
17-03-17 20:00:48.458 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 20:00:48.458 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:00:48.458 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:00:48.458 -07 000000431 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:00:48.458 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-17 20:00:48.468 -07 000000431 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:00:48.468 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:00:48.468 -07 000000012 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 20:00:48.478 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:48.478 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 20:00:48.478 -07 000000431 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:00:48.478 -07 000000547 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:00:48.488 -07 000000431 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:48.488 -07 000000431 INF: GreenLED: LED was on for 19 ms
17-03-17 20:00:48.488 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:00:48.488 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:00:48.488 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 20:00:48.498 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:00:48.498 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:00:48.998 -07 000000431 INF: FPGA: Recv EMOUT
17-03-17 20:00:48.998 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:00:48.998 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:00:48.998 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 20:00:49.008 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:00:49.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:00:49.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.127640529640601. ------
17-03-17 20:00:49.008 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17951 mm
17-03-17 20:00:49.008 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:00:49.008 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:00:49.018 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:00:49.018 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:00:49.018 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:00:49.018 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-17 20:00:49.018 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39213, sync = True, waitForSettling = False)
17-03-17 20:00:49.018 -07 000000012 INF: Z Motor: Moving to -0.179506 mm, started at -0.127641 mm, distance = -51.87 um
17-03-17 20:00:49.018 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:00:49.028 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:00:49.028 -07 000000486 INF: FPGA: Recv YRDPOS 154378
17-03-17 20:00:49.038 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:00:49.038 -07 000000478 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:00:49.038 -07 000000478 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:00:49.038 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:00:49.038 -07 000000012 INF: FPGA: Xmit ZDACW 39213\n [Z Motor]
17-03-17 20:00:49.038 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:00:49.048 -07 000000012 INF: FPGA: 'ZDACW 39213' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:00:49.048 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:00:49.048 -07 000000547 INF: FPGA: Recv ZDACR 39213
17-03-17 20:00:49.058 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:49.058 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:00:49.058 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:00:49.218 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:00:49.218 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 20:00:50.288 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.978563,
17-03-17 20:00:50.738 -07 000000626 INF: FPGA: Recv YMVTO 122703 24774
17-03-17 20:00:50.738 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 20:00:50.738 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:00:50.738 -07 000000478 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24774 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:00:50.738 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.467 mm, average velocity = 9.072 mm/sec
17-03-17 20:00:51.738 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:53.588 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:00:53.588 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:00:53.598 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.598 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:00:53.618 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:00:53.618 -07 000000478 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:00:53.618 -07 000000478 INF: Y Motor: Moved to 59.9111 after 4600 ms
17-03-17 20:00:53.618 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179506 mm (DAC = 39213)
17-03-17 20:00:53.618 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.618 -07 000000478 INF: FPGA: Recv ZSGSRD 37240
17-03-17 20:00:53.628 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:00:53.628 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.628 -07 000000478 INF: FPGA: Recv ZSGSRD 37232
17-03-17 20:00:53.638 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.638 -07 000000431 INF: FPGA: Recv ZSGSRD 37232
17-03-17 20:00:53.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.648 -07 000000431 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:00:53.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.658 -07 000000478 INF: FPGA: Recv ZSGSRD 37234
17-03-17 20:00:53.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.668 -07 000000478 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:00:53.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.678 -07 000000478 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:00:53.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.688 -07 000000478 INF: FPGA: Recv ZSGSRD 37232
17-03-17 20:00:53.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.698 -07 000000486 INF: FPGA: Recv ZSGSRD 37235
17-03-17 20:00:53.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:53.708 -07 000000448 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:00:53.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.718 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:00:53.718 -07 000000486 INF: FPGA: Recv ZPIEZORD 33708
17-03-17 20:00:53.728 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.984 V. Piezo Error = -7.8 V.
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37233 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37232 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37231 (-178.6 uncal um), Max = 37240 (-178.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37233, posNoise = 7, negNoise = 2
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: After move to -0.179506, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: Settle wait time = 4603 ms, measure time = 104 ms (allowed 150 ms), total time = 4707 ms
17-03-17 20:00:53.728 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:00:53.778 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4761 ms
17-03-17 20:00:53.778 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:00:53.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:00:53.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:00:53.778 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:00:53.778 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:00:53.778 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:00:53.778 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:00:53.788 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:00:53.788 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:00:53.808 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:00:53.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:00:53.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:00:53.808 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:00:53.828 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:00:53.828 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:00:53.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:00:53.868 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:00:54.068 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:00:54.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:00:54.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:00:54.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:00:54.108 -07 000000608 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:00:54.108 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:00:54.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:00:54.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:00:54.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:54.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:00:54.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:00:54.218 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:00:54.218 -07 000000486 INF: Image SNR check: start
17-03-17 20:00:54.218 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:00:54.228 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:00:54.228 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:00:54.228 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=64.59]
17-03-17 20:00:54.228 -07 000000486 INF: Autofocus start
17-03-17 20:00:54.228 -07 000000486 INF: MeasureProfile start
17-03-17 20:00:54.238 -07 000000486 INF: MeasureProfile done
17-03-17 20:00:54.238 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:00:54.238 -07 000000486 INF: Autofocus finished
17-03-17 20:00:54.428 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:00:54.428 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:00:54.428 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179516042685321. ----------
17-03-17 20:00:54.428 -07 000000610 INF: Cycle	33	Tile	1	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:00:54.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37710, sync = True, waitForSettling = True)
17-03-17 20:00:54.438 -07 000000610 INF: Z Motor: Moving to -0.172625 mm, started at -0.179516 mm, distance = 6.89 um
17-03-17 20:00:54.438 -07 000000610 INF: FPGA: Xmit ZDACW 37710\n [Z Motor]
17-03-17 20:00:54.438 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:00:54.448 -07 000000610 INF: FPGA: 'ZDACW 37710' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:00:54.448 -07 000000431 INF: FPGA: Recv ZDACR 37710
17-03-17 20:00:54.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:00:54.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:00:54.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:00:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.618 -07 000000431 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:00:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.628 -07 000000431 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:00:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.638 -07 000000480 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:00:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.648 -07 000000482 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:00:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.658 -07 000000431 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:00:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:00:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.668 -07 000000415 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:00:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.678 -07 000000415 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:00:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.688 -07 000000415 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:00:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:54.698 -07 000000482 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:00:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:00:54.708 -07 000000482 INF: FPGA: Recv ZPIEZORD 32269
17-03-17 20:00:54.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:54.718 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.6 V.
17-03-17 20:00:54.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36162 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36151 (-171.7 uncal um), Max = 36167 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:00:54.718 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36162, posNoise = 5, negNoise = 11
17-03-17 20:00:54.718 -07 000000610 INF: Z Motor: After move to -0.172625, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:00:54.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:00:54.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:00:54.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:00:54.718 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:00:54.718 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:00:54.718 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:00:54.718 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:00:54.718 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:00:54.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:00:54.718 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:00:54.718 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:00:54.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:00:54.718 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:00:54.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:00:54.728 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:00:54.738 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:00:54.738 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:00:54.738 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:00:54.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:00:54.748 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:00:54.748 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:00:54.758 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:00:54.758 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 20:00:54.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37887 150\n [Camera]
17-03-17 20:00:54.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:00:55.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:00:55.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:00:55.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:00:55.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:00:55.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:00:55.378 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:00:55.378 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:00:55.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:00:55.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:00:55.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:00:55.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37887 793
17-03-17 20:00:55.648 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.986717,
17-03-17 20:00:55.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:00:55.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:00:55.778 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:00:55.778 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:55.778 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:00:55.778 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:00:55.778 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:55.778 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:00:55.778 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:00:55.778 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:00:55.788 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:00:55.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:00:55.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:00:55.918 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:00:56.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:00:56.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:00:56.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:00:56.028 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:00:56.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 20:00:56.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:00:56.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:00:56.098 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:00:56.098 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:00:56.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37887 150' command took 2 ms to send, 1329 ms to get response, and 1338 ms overall
17-03-17 20:00:56.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:00:56.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172635711481495. ------
17-03-17 20:00:56.108 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:00:56.108 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17903 mm
17-03-17 20:00:56.108 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:00:56.108 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:00:56.108 -07 000000593 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:00:56.108 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:00:56.108 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39110, sync = True, waitForSettling = False)
17-03-17 20:00:56.108 -07 000000012 INF: Z Motor: Moving to -0.179034 mm, started at -0.172636 mm, distance = -6.40 um
17-03-17 20:00:56.118 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:00:56.118 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:00:56.118 -07 000000448 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:00:56.128 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:00:56.128 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:00:56.128 -07 000000593 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:00:56.128 -07 000000593 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:00:56.128 -07 000000593 INF: Y Motor: Moving 1330 steps2
17-03-17 20:00:56.138 -07 000000012 INF: FPGA: Xmit ZDACW 39110\n [Z Motor]
17-03-17 20:00:56.138 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:00:56.148 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:00:56.148 -07 000000012 INF: FPGA: 'ZDACW 39110' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:00:56.158 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:00:56.158 -07 000000478 INF: FPGA: Recv ZDACR 39110
17-03-17 20:00:56.168 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:00:56.168 -07 000000012 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:00:56.328 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:00:56.328 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:00:56.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:00:56.428 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:00:56.428 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:56.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:00:56.428 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:00:56.428 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:56.438 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:00:56.438 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:00:56.438 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:00:56.438 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:00:56.518 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:00:56.518 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:00:56.548 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:00:56.558 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:00:56.558 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:00:56.558 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:00:56.558 -07 000000593 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:00:56.558 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.831 mm, average velocity = 2.105 mm/sec
17-03-17 20:00:56.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:00:56.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:00:57.508 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:00:57.508 -07 000000547 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:00:57.518 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.518 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:00:57.538 -07 000000593 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:00:57.538 -07 000000593 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:00:57.538 -07 000000593 INF: Y Motor: Moved to 60.7329 after 1425 ms (table move)
17-03-17 20:00:57.538 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179034 mm (DAC = 39110)
17-03-17 20:00:57.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.538 -07 000000551 INF: FPGA: Recv ZSGSRD 37166
17-03-17 20:00:57.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:00:57.548 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.548 -07 000000547 INF: FPGA: Recv ZSGSRD 37153
17-03-17 20:00:57.558 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.558 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.558 -07 000000593 INF: FPGA: Recv ZSGSRD 37155
17-03-17 20:00:57.568 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.568 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.568 -07 000000547 INF: FPGA: Recv ZSGSRD 37158
17-03-17 20:00:57.578 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.578 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.578 -07 000000480 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:00:57.588 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.588 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.588 -07 000000501 INF: FPGA: Recv ZSGSRD 37163
17-03-17 20:00:57.598 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.598 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.598 -07 000000480 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:00:57.608 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.608 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.608 -07 000000501 INF: FPGA: Recv ZSGSRD 37161
17-03-17 20:00:57.618 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.618 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.618 -07 000000482 INF: FPGA: Recv ZSGSRD 37158
17-03-17 20:00:57.628 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.628 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:57.628 -07 000000486 INF: FPGA: Recv ZSGSRD 37148
17-03-17 20:00:57.638 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.638 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:00:57.638 -07 000000482 INF: FPGA: Recv ZPIEZORD 33640
17-03-17 20:00:57.648 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.968 V. Piezo Error = -7.8 V.
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37159 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37160 (-178.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37148 (-178.1 uncal um), Max = 37166 (-178.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37159, posNoise = 7, negNoise = 11
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: After move to -0.179034, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: Settle wait time = 1427 ms, measure time = 103 ms (allowed 150 ms), total time = 1530 ms
17-03-17 20:00:57.648 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:00:57.698 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 20:00:57.698 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:00:57.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:00:57.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:00:57.698 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:00:57.698 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:00:57.698 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:00:57.698 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:00:57.698 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:00:57.698 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:00:57.708 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:00:57.708 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:00:57.718 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:00:57.718 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:00:57.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:00:57.768 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:00:57.968 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:00:57.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:00:57.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:00:57.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:00:58.008 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:00:58.008 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:00:58.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:00:58.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:00:58.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:58.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:00:58.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:00:58.108 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:00:58.108 -07 000000448 INF: Autofocus start
17-03-17 20:00:58.108 -07 000000448 INF: MeasureProfile start
17-03-17 20:00:58.108 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:00:58.118 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:00:58.118 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:00:58.118 -07 000000448 INF: MeasureProfile done
17-03-17 20:00:58.118 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:00:58.118 -07 000000448 INF: Autofocus finished
17-03-17 20:00:58.318 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:00:58.318 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:00:58.318 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.17904065098683. ----------
17-03-17 20:00:58.318 -07 000000610 INF: Cycle	33	Tile	2	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:00:58.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37624, sync = True, waitForSettling = True)
17-03-17 20:00:58.328 -07 000000610 INF: Z Motor: Moving to -0.172232 mm, started at -0.179041 mm, distance = 6.81 um
17-03-17 20:00:58.328 -07 000000610 INF: FPGA: Xmit ZDACW 37624\n [Z Motor]
17-03-17 20:00:58.328 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:00:58.338 -07 000000610 INF: FPGA: 'ZDACW 37624' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:00:58.338 -07 000000431 INF: FPGA: Recv ZDACR 37624
17-03-17 20:00:58.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:00:58.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.498 -07 000000478 INF: FPGA: Recv ZSGSRD 36102
17-03-17 20:00:58.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:00:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.508 -07 000000478 INF: FPGA: Recv ZSGSRD 36101
17-03-17 20:00:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.518 -07 000000431 INF: FPGA: Recv ZSGSRD 36102
17-03-17 20:00:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.528 -07 000000486 INF: FPGA: Recv ZSGSRD 36102
17-03-17 20:00:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:00:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.538 -07 000000478 INF: FPGA: Recv ZSGSRD 36103
17-03-17 20:00:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.548 -07 000000478 INF: FPGA: Recv ZSGSRD 36098
17-03-17 20:00:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.558 -07 000000478 INF: FPGA: Recv ZSGSRD 36109
17-03-17 20:00:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.568 -07 000000478 INF: FPGA: Recv ZSGSRD 36105
17-03-17 20:00:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.578 -07 000000486 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:00:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:00:58.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36104
17-03-17 20:00:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:00:58.598 -07 000000415 INF: FPGA: Recv ZPIEZORD 32171
17-03-17 20:00:58.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:00:58.608 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.7 V.
17-03-17 20:00:58.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36102 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36102 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36109 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:00:58.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36102, posNoise = 7, negNoise = 6
17-03-17 20:00:58.608 -07 000000610 INF: Z Motor: After move to -0.172232, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:00:58.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:00:58.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:00:58.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:00:58.608 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:00:58.608 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:00:58.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:00:58.608 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:00:58.608 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:00:58.608 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:00:58.608 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:00:58.608 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:00:58.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:00:58.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:00:58.618 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:00:58.618 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:00:58.618 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:00:58.618 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:00:58.628 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:00:58.628 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:00:58.628 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:00:58.628 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:00:58.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37801 150\n [Camera]
17-03-17 20:00:58.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:00:59.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:00:59.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:00:59.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:00:59.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:00:59.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 20:00:59.248 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:00:59.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:00:59.248 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:00:59.248 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:00:59.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:00:59.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37801 793
17-03-17 20:00:59.578 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:00:59.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:00:59.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:00:59.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:59.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:00:59.648 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:00:59.648 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:00:59.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:00:59.648 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:00:59.648 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:00:59.658 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:00:59.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:00:59.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:00:59.778 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:00:59.778 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:00:59.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:00:59.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:00:59.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:00:59.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:00:59.788 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:00:59.788 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:00:59.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:00:59.968 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:00:59.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37801 150' command took 2 ms to send, 1328 ms to get response, and 1339 ms overall
17-03-17 20:00:59.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:00:59.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172250258752989. ------
17-03-17 20:00:59.978 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:00:59.978 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17882 mm
17-03-17 20:00:59.978 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:00:59.978 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:00:59.978 -07 000000486 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:00:59.978 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39062, sync = True, waitForSettling = False)
17-03-17 20:00:59.978 -07 000000608 INF: Z Motor: Moving to -0.178814 mm, started at -0.172250 mm, distance = -6.56 um
17-03-17 20:00:59.978 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:00:59.988 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:00:59.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:00.098 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:00.098 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:01:00.098 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 20:01:00.098 -07 000000486 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:00.098 -07 000000486 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:00.108 -07 000000486 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:01:00.108 -07 000000608 INF: FPGA: Xmit ZDACW 39062\n [Z Motor]
17-03-17 20:01:00.108 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:00.118 -07 000000608 INF: FPGA: 'ZDACW 39062' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 20:01:00.118 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:00.118 -07 000000478 INF: FPGA: Recv ZDACR 39062
17-03-17 20:01:00.128 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:00.128 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:00.128 -07 000000608 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-17 20:01:00.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:01:00.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:01:00.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:00.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:01:00.178 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:01:00.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:00.188 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:00.188 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:00.188 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:01:00.198 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:01:00.298 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:00.298 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 316 ms overall
17-03-17 20:01:00.498 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:01:00.498 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:01:00.538 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:00.538 -07 000000593 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:01:00.548 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:00.548 -07 000000486 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:00.548 -07 000000486 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:01:00.548 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-17 20:01:01.008 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.994908,
17-03-17 20:01:01.498 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:01.498 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:01:01.508 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:01.508 -07 000000486 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:01.528 -07 000000486 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:01.528 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:01.528 -07 000000486 INF: Y Motor: Moved to 61.5640 after 1545 ms (table move)
17-03-17 20:01:01.528 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178814 mm (DAC = 39062)
17-03-17 20:01:01.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.528 -07 000000547 INF: FPGA: Recv ZSGSRD 37124
17-03-17 20:01:01.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:01.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.538 -07 000000547 INF: FPGA: Recv ZSGSRD 37117
17-03-17 20:01:01.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.548 -07 000000486 INF: FPGA: Recv ZSGSRD 37117
17-03-17 20:01:01.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.558 -07 000000486 INF: FPGA: Recv ZSGSRD 37129
17-03-17 20:01:01.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.568 -07 000000486 INF: FPGA: Recv ZSGSRD 37132
17-03-17 20:01:01.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.578 -07 000000547 INF: FPGA: Recv ZSGSRD 37131
17-03-17 20:01:01.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.588 -07 000000547 INF: FPGA: Recv ZSGSRD 37128
17-03-17 20:01:01.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.598 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.598 -07 000000547 INF: FPGA: Recv ZSGSRD 37125
17-03-17 20:01:01.608 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.608 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.608 -07 000000012 INF: FPGA: Recv ZSGSRD 37124
17-03-17 20:01:01.618 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.618 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:01.618 -07 000000547 INF: FPGA: Recv ZSGSRD 37122
17-03-17 20:01:01.628 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.628 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:01.628 -07 000000012 INF: FPGA: Recv ZPIEZORD 33540
17-03-17 20:01:01.638 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.960 V. Piezo Error = -8.0 V.
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37125 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37124 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37117 (-177.9 uncal um), Max = 37132 (-178.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37125, posNoise = 7, negNoise = 8
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: After move to -0.178814, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: Settle wait time = 1547 ms, measure time = 106 ms (allowed 150 ms), total time = 1653 ms
17-03-17 20:01:01.638 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:01.688 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 20:01:01.688 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:01.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:01.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:01.688 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:01.688 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:01.688 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:01.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:01.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:01.688 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:01.698 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:01.698 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:01.708 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:01:01.708 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:01:01.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:01.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:01.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:01.758 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:01.958 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:01.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:01.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:01.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:01.998 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:01.998 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:01.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:01:02.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:01:02.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:02.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:02.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:01:02.098 -07 000000482 INF: Autofocus start
17-03-17 20:01:02.098 -07 000000482 INF: MeasureProfile start
17-03-17 20:01:02.098 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:02.098 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:02.108 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:02.108 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:02.108 -07 000000482 INF: MeasureProfile done
17-03-17 20:01:02.108 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:02.108 -07 000000482 INF: Autofocus finished
17-03-17 20:01:02.308 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:02.308 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:02.308 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.17882222777401. ----------
17-03-17 20:01:02.308 -07 000000610 INF: Cycle	33	Tile	3	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:02.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37577, sync = True, waitForSettling = True)
17-03-17 20:01:02.318 -07 000000610 INF: Z Motor: Moving to -0.172016 mm, started at -0.178822 mm, distance = 6.81 um
17-03-17 20:01:02.318 -07 000000610 INF: FPGA: Xmit ZDACW 37577\n [Z Motor]
17-03-17 20:01:02.318 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:01:02.328 -07 000000610 INF: FPGA: 'ZDACW 37577' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:02.328 -07 000000593 INF: FPGA: Recv ZDACR 37577
17-03-17 20:01:02.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:02.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.488 -07 000000593 INF: FPGA: Recv ZSGSRD 36070
17-03-17 20:01:02.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:02.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.498 -07 000000593 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:01:02.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.508 -07 000000593 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:01:02.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.518 -07 000000593 INF: FPGA: Recv ZSGSRD 36070
17-03-17 20:01:02.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.528 -07 000000478 INF: FPGA: Recv ZSGSRD 36063
17-03-17 20:01:02.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:02.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.538 -07 000000478 INF: FPGA: Recv ZSGSRD 36074
17-03-17 20:01:02.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.548 -07 000000478 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:01:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.558 -07 000000480 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:01:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.568 -07 000000480 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:01:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:02.578 -07 000000480 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:01:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:02.588 -07 000000480 INF: FPGA: Recv ZPIEZORD 32138
17-03-17 20:01:02.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:02.598 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.7 V.
17-03-17 20:01:02.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36068 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36063 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:02.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36068, posNoise = 6, negNoise = 5
17-03-17 20:01:02.598 -07 000000610 INF: Z Motor: After move to -0.172016, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:02.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:01:02.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:02.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:02.598 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:02.598 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:02.598 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:02.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:02.598 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:02.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:02.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:02.598 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:02.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:02.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:02.608 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:02.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:02.608 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:02.608 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:02.618 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:01:02.618 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:01:02.618 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:01:02.618 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:01:02.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37754 150\n [Camera]
17-03-17 20:01:02.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:03.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:03.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:03.228 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:03.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:03.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:03.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:03.238 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:03.238 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:01:03.238 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:03.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:01:03.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37754 793
17-03-17 20:01:03.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:03.618 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:01:03.618 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:01:03.618 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:03.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:01:03.618 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:01:03.618 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:03.628 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:03.628 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:01:03.628 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:03.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:01:03.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:03.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:03.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:03.768 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:03.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:03.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:03.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:01:03.768 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:03.768 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:03.768 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:01:03.958 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1333
17-03-17 20:01:03.958 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:03.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37754 150' command took 2 ms to send, 1327 ms to get response, and 1339 ms overall
17-03-17 20:01:03.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:03.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.172031835540169. ------
17-03-17 20:01:03.968 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:03.968 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17803 mm
17-03-17 20:01:03.968 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:03.968 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38890, sync = True, waitForSettling = False)
17-03-17 20:01:03.968 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:01:03.968 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:01:03.968 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:03.978 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:03.978 -07 000000482 INF: Z Motor: Moving to -0.178027 mm, started at -0.172032 mm, distance = -6.00 um
17-03-17 20:01:03.978 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:03.978 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:01:03.988 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:03.988 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:03.988 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:03.988 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:01:03.988 -07 000000482 INF: FPGA: Xmit ZDACW 38890\n [Z Motor]
17-03-17 20:01:03.988 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:03.998 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:03.998 -07 000000482 INF: FPGA: 'ZDACW 38890' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:04.008 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:04.018 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:04.018 -07 000000478 INF: FPGA: Recv ZDACR 38890
17-03-17 20:01:04.028 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:04.028 -07 000000482 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:01:04.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:01:04.148 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:01:04.148 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:04.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:01:04.158 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:01:04.158 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:04.158 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:04.158 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:04.158 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:01:04.168 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:01:04.198 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:04.198 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:01:04.378 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:01:04.378 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:01:04.418 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:04.418 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:01:04.428 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:04.428 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:04.428 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:01:04.428 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 20:01:05.378 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:05.378 -07 000000593 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:01:05.388 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:05.388 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:05.408 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:05.408 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:05.408 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1432 ms (table move)
17-03-17 20:01:05.408 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178027 mm (DAC = 38890)
17-03-17 20:01:05.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.418 -07 000000593 INF: FPGA: Recv ZSGSRD 37010
17-03-17 20:01:05.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:01:05.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.418 -07 000000547 INF: FPGA: Recv ZSGSRD 37000
17-03-17 20:01:05.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:05.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.428 -07 000000501 INF: FPGA: Recv ZSGSRD 36994
17-03-17 20:01:05.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.438 -07 000000593 INF: FPGA: Recv ZSGSRD 37001
17-03-17 20:01:05.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:05.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.448 -07 000000480 INF: FPGA: Recv ZSGSRD 37002
17-03-17 20:01:05.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.458 -07 000000482 INF: FPGA: Recv ZSGSRD 37017
17-03-17 20:01:05.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.468 -07 000000431 INF: FPGA: Recv ZSGSRD 37002
17-03-17 20:01:05.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.478 -07 000000482 INF: FPGA: Recv ZSGSRD 36994
17-03-17 20:01:05.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.488 -07 000000478 INF: FPGA: Recv ZSGSRD 37006
17-03-17 20:01:05.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:05.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36997
17-03-17 20:01:05.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.508 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:05.508 -07 000000431 INF: FPGA: Recv ZPIEZORD 33370
17-03-17 20:01:05.518 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.934 V. Piezo Error = -8.1 V.
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37002 (-177.1 uncal um), Error = 0.9 uncal um, Median = 37002 (-177.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36994 (-177.1 uncal um), Max = 37017 (-177.2 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37002, posNoise = 15, negNoise = 8
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: After move to -0.178027, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:01:05.518 -07 000000012 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:05.568 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:01:05.568 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:05.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:05.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:05.568 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:05.568 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:05.568 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:05.568 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:05.568 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:05.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:05.578 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:05.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:05.588 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:01:05.588 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:01:05.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:05.648 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:05.848 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:05.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:05.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:05.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) start.
17-03-17 20:01:05.888 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:05.888 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:05.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 301 ms overall
17-03-17 20:01:05.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 20:01:05.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:05.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:05.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:01:05.988 -07 000000415 INF: Autofocus start
17-03-17 20:01:05.988 -07 000000415 INF: MeasureProfile start
17-03-17 20:01:05.988 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:05.988 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:05.998 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:05.998 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:05.998 -07 000000415 INF: MeasureProfile done
17-03-17 20:01:05.998 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:05.998 -07 000000415 INF: Autofocus finished
17-03-17 20:01:06.198 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:06.198 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:06.198 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.178032049680574. ----------
17-03-17 20:01:06.198 -07 000000610 INF: Cycle	33	Tile	4	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:06.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37405, sync = True, waitForSettling = True)
17-03-17 20:01:06.208 -07 000000610 INF: Z Motor: Moving to -0.171229 mm, started at -0.178032 mm, distance = 6.80 um
17-03-17 20:01:06.208 -07 000000610 INF: FPGA: Xmit ZDACW 37405\n [Z Motor]
17-03-17 20:01:06.208 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:01:06.218 -07 000000610 INF: FPGA: 'ZDACW 37405' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:06.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:06.218 -07 000000012 INF: FPGA: Recv ZDACR 37405
17-03-17 20:01:06.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:06.368 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.997626,
17-03-17 20:01:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35944
17-03-17 20:01:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.388 -07 000000478 INF: FPGA: Recv ZSGSRD 35947
17-03-17 20:01:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.418 -07 000000415 INF: FPGA: Recv ZSGSRD 35951
17-03-17 20:01:06.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:06.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.428 -07 000000415 INF: FPGA: Recv ZSGSRD 35947
17-03-17 20:01:06.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35946
17-03-17 20:01:06.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:06.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.458 -07 000000593 INF: FPGA: Recv ZSGSRD 35941
17-03-17 20:01:06.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.468 -07 000000593 INF: FPGA: Recv ZSGSRD 35949
17-03-17 20:01:06.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.478 -07 000000547 INF: FPGA: Recv ZSGSRD 35944
17-03-17 20:01:06.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.488 -07 000000547 INF: FPGA: Recv ZSGSRD 35943
17-03-17 20:01:06.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:06.498 -07 000000593 INF: FPGA: Recv ZSGSRD 35949
17-03-17 20:01:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:06.508 -07 000000547 INF: FPGA: Recv ZPIEZORD 31962
17-03-17 20:01:06.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:06.518 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.8 V.
17-03-17 20:01:06.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35946 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35946 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35941 (-170.3 uncal um), Max = 35951 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:06.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35946, posNoise = 5, negNoise = 5
17-03-17 20:01:06.518 -07 000000610 INF: Z Motor: After move to -0.171229, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:06.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 20:01:06.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:06.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:06.518 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:06.518 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:06.518 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:06.518 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:06.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:06.518 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:06.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:01:06.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:06.518 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:06.518 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:06.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:01:06.528 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:06.528 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:06.528 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:06.538 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:01:06.538 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:01:06.538 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:01:06.538 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:01:06.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37582 150\n [Camera]
17-03-17 20:01:06.738 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:06.738 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:07.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:07.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:07.148 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:07.148 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:07.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:01:07.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:07.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:07.148 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:07.148 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:07.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:01:07.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37582 793
17-03-17 20:01:07.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:07.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:01:07.538 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:01:07.538 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:07.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:01:07.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:01:07.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:07.538 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:07.538 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:01:07.548 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:01:07.548 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:01:07.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:07.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:07.688 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:07.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:07.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:01:07.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:07.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:07.688 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:07.688 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:07.688 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:01:07.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:01:07.878 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:07.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37582 150' command took 2 ms to send, 1335 ms to get response, and 1338 ms overall
17-03-17 20:01:07.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:07.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171248081658874. ------
17-03-17 20:01:07.888 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:07.888 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17757 mm
17-03-17 20:01:07.888 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:07.888 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:07.888 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38790, sync = True, waitForSettling = False)
17-03-17 20:01:07.888 -07 000000486 INF: Z Motor: Moving to -0.177569 mm, started at -0.171248 mm, distance = -6.32 um
17-03-17 20:01:08.008 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:01:08.008 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:01:08.008 -07 000000486 INF: FPGA: Xmit ZDACW 38790\n [Z Motor]
17-03-17 20:01:08.008 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 20:01:08.018 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:08.018 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:01:08.018 -07 000000486 INF: FPGA: 'ZDACW 38790' command took 1 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:01:08.018 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:01:08.028 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:08.028 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:01:08.028 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:08.028 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:08.028 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:01:08.038 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:08.038 -07 000000459 INF: FPGA: Recv ZDACR 38790
17-03-17 20:01:08.048 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:01:08.048 -07 000000486 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-17 20:01:08.048 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:08.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:01:08.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:01:08.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:08.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:01:08.078 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:01:08.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:08.088 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:08.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:08.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:01:08.088 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:01:08.228 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:08.228 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 20:01:08.418 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:01:08.418 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:01:08.458 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:08.458 -07 000000501 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:01:08.468 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:01:08.468 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:08.468 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:01:08.468 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 20:01:09.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:09.418 -07 000000459 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:01:09.428 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:09.428 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:09.448 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:09.448 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:09.448 -07 000000012 INF: Y Motor: Moved to 63.2241 after 1437 ms (table move)
17-03-17 20:01:09.448 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177569 mm (DAC = 38790)
17-03-17 20:01:09.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.448 -07 000000478 INF: FPGA: Recv ZSGSRD 36934
17-03-17 20:01:09.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:09.458 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.458 -07 000000478 INF: FPGA: Recv ZSGSRD 36925
17-03-17 20:01:09.468 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.468 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.468 -07 000000012 INF: FPGA: Recv ZSGSRD 36923
17-03-17 20:01:09.478 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.478 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.478 -07 000000486 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:01:09.488 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.488 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.488 -07 000000486 INF: FPGA: Recv ZSGSRD 36936
17-03-17 20:01:09.498 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.498 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.498 -07 000000012 INF: FPGA: Recv ZSGSRD 36941
17-03-17 20:01:09.508 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.508 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.508 -07 000000012 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:01:09.518 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.518 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36924
17-03-17 20:01:09.528 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.528 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.528 -07 000000431 INF: FPGA: Recv ZSGSRD 36929
17-03-17 20:01:09.538 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:09.538 -07 000000431 INF: FPGA: Recv ZSGSRD 36925
17-03-17 20:01:09.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.548 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:09.548 -07 000000431 INF: FPGA: Recv ZPIEZORD 33287
17-03-17 20:01:09.558 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.1 V.
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36930 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36930 (-176.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36923 (-176.6 uncal um), Max = 36941 (-176.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36930, posNoise = 11, negNoise = 7
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: After move to -0.177569, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:01:09.558 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:09.608 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 20:01:09.608 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:09.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:09.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:09.608 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:09.608 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:09.608 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:09.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:09.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:09.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:09.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:09.618 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:09.628 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:01:09.628 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:01:09.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:09.668 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:09.868 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:09.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:09.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:09.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:09.908 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:09.908 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:09.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:01:09.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:01:09.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:09.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:09.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:10.008 -07 000000415 INF: Autofocus start
17-03-17 20:01:10.008 -07 000000415 INF: MeasureProfile start
17-03-17 20:01:10.008 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:10.008 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:10.018 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:10.018 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:10.018 -07 000000415 INF: MeasureProfile done
17-03-17 20:01:10.018 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:01:10.018 -07 000000415 INF: Autofocus finished
17-03-17 20:01:10.218 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:10.218 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:10.218 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177569506406367. ----------
17-03-17 20:01:10.228 -07 000000610 INF: Cycle	33	Tile	5	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:10.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37323, sync = True, waitForSettling = True)
17-03-17 20:01:10.228 -07 000000610 INF: Z Motor: Moving to -0.170854 mm, started at -0.177570 mm, distance = 6.72 um
17-03-17 20:01:10.228 -07 000000610 INF: FPGA: Xmit ZDACW 37323\n [Z Motor]
17-03-17 20:01:10.228 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:01:10.238 -07 000000610 INF: FPGA: 'ZDACW 37323' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:10.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:10.238 -07 000000593 INF: FPGA: Recv ZDACR 37323
17-03-17 20:01:10.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:10.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.398 -07 000000462 INF: FPGA: Recv ZSGSRD 35886
17-03-17 20:01:10.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:10.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.408 -07 000000462 INF: FPGA: Recv ZSGSRD 35891
17-03-17 20:01:10.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35888
17-03-17 20:01:10.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.428 -07 000000462 INF: FPGA: Recv ZSGSRD 35881
17-03-17 20:01:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35883
17-03-17 20:01:10.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.448 -07 000000462 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:01:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.458 -07 000000482 INF: FPGA: Recv ZSGSRD 35889
17-03-17 20:01:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35890
17-03-17 20:01:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35884
17-03-17 20:01:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:10.488 -07 000000462 INF: FPGA: Recv ZSGSRD 35885
17-03-17 20:01:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:10.498 -07 000000462 INF: FPGA: Recv ZPIEZORD 31903
17-03-17 20:01:10.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:10.508 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -8.8 V.
17-03-17 20:01:10.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35887 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35887 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35881 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:10.508 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35887, posNoise = 8, negNoise = 6
17-03-17 20:01:10.508 -07 000000610 INF: Z Motor: After move to -0.170854, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:10.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:01:10.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:10.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:10.508 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:10.508 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:10.508 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:10.508 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:10.508 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:10.508 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:10.508 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:01:10.508 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:10.508 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:10.508 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:10.518 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:10.518 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:10.518 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:10.518 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:10.528 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:01:10.528 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:01:10.528 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:01:10.528 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:01:10.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37499 150\n [Camera]
17-03-17 20:01:10.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:11.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:11.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:11.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:11.138 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:11.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:11.138 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:11.138 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:11.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:11.148 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:11.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:11.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37499 793
17-03-17 20:01:11.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:11.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:01:11.518 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:01:11.518 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:11.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:01:11.518 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:01:11.518 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:11.518 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:11.518 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:01:11.518 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:11.528 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:01:11.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:11.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:11.678 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:11.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:11.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:11.678 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:11.688 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:11.688 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:01:11.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:11.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:01:11.738 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:11.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:11.768 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.996267,
17-03-17 20:01:11.868 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:11.868 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:11.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37499 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:01:11.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:11.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.17086905314251. ------
17-03-17 20:01:11.988 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:11.988 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17730 mm
17-03-17 20:01:11.988 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:11.988 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:11.988 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:01:11.988 -07 000000415 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:01:11.988 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38732, sync = True, waitForSettling = False)
17-03-17 20:01:11.988 -07 000000462 INF: Z Motor: Moving to -0.177304 mm, started at -0.170869 mm, distance = -6.43 um
17-03-17 20:01:11.998 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:11.998 -07 000000462 INF: FPGA: Xmit ZDACW 38732\n [Z Motor]
17-03-17 20:01:11.998 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:01:12.008 -07 000000462 INF: FPGA: 'ZDACW 38732' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:01:12.008 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:12.008 -07 000000478 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:01:12.018 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:01:12.018 -07 000000415 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:12.018 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:12.018 -07 000000415 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:12.018 -07 000000415 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:01:12.028 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:12.028 -07 000000486 INF: FPGA: Recv ZDACR 38732
17-03-17 20:01:12.038 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:12.038 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:12.038 -07 000000462 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:01:12.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:01:12.078 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:01:12.078 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:12.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:01:12.078 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:01:12.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:12.078 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:12.088 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:12.088 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:01:12.088 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:01:12.218 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:12.218 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:01:12.408 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:01:12.408 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:01:12.448 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:12.448 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:01:12.458 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:12.458 -07 000000415 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:12.458 -07 000000415 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:01:12.458 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 20:01:13.408 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:13.408 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:01:13.418 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.418 -07 000000415 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:13.428 -07 000000415 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:13.428 -07 000000415 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:13.428 -07 000000415 INF: Y Motor: Moved to 64.0571 after 1444 ms (table move)
17-03-17 20:01:13.438 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177304 mm (DAC = 38732)
17-03-17 20:01:13.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.438 -07 000000547 INF: FPGA: Recv ZSGSRD 36897
17-03-17 20:01:13.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:13.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.448 -07 000000593 INF: FPGA: Recv ZSGSRD 36891
17-03-17 20:01:13.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.458 -07 000000547 INF: FPGA: Recv ZSGSRD 36892
17-03-17 20:01:13.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.468 -07 000000012 INF: FPGA: Recv ZSGSRD 36894
17-03-17 20:01:13.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.478 -07 000000501 INF: FPGA: Recv ZSGSRD 36890
17-03-17 20:01:13.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.488 -07 000000486 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:01:13.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.498 -07 000000415 INF: FPGA: Recv ZSGSRD 36881
17-03-17 20:01:13.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:01:13.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.518 -07 000000501 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:01:13.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:13.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36887
17-03-17 20:01:13.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.538 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:13.538 -07 000000501 INF: FPGA: Recv ZPIEZORD 33274
17-03-17 20:01:13.548 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.0 V.
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36890 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36890 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36881 (-176.4 uncal um), Max = 36897 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36890, posNoise = 7, negNoise = 9
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: After move to -0.177304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:01:13.548 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:13.598 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:01:13.598 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:13.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:13.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:13.598 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:13.598 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:13.598 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:13.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:13.608 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:13.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:13.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:13.608 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:13.608 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:13.608 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:01:13.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:13.658 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:13.858 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:13.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:13.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:13.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:13.898 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:13.898 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:13.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:01:13.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:01:13.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:13.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:13.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:13.998 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:13.998 -07 000000626 INF: Autofocus start
17-03-17 20:01:13.998 -07 000000626 INF: MeasureProfile start
17-03-17 20:01:13.998 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:14.008 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:14.008 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:14.018 -07 000000626 INF: MeasureProfile done
17-03-17 20:01:14.018 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:14.018 -07 000000626 INF: Autofocus finished
17-03-17 20:01:14.208 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:14.208 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:14.208 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177312537920697. ----------
17-03-17 20:01:14.208 -07 000000610 INF: Cycle	33	Tile	6	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:14.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37246, sync = True, waitForSettling = True)
17-03-17 20:01:14.218 -07 000000610 INF: Z Motor: Moving to -0.170501 mm, started at -0.177313 mm, distance = 6.81 um
17-03-17 20:01:14.218 -07 000000610 INF: FPGA: Xmit ZDACW 37246\n [Z Motor]
17-03-17 20:01:14.218 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:14.228 -07 000000610 INF: FPGA: 'ZDACW 37246' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:14.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:14.228 -07 000000012 INF: FPGA: Recv ZDACR 37246
17-03-17 20:01:14.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:14.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.388 -07 000000482 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:01:14.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:14.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.398 -07 000000415 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:01:14.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.408 -07 000000501 INF: FPGA: Recv ZSGSRD 35838
17-03-17 20:01:14.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35825
17-03-17 20:01:14.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.428 -07 000000459 INF: FPGA: Recv ZSGSRD 35832
17-03-17 20:01:14.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35835
17-03-17 20:01:14.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.448 -07 000000501 INF: FPGA: Recv ZSGSRD 35829
17-03-17 20:01:14.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.458 -07 000000608 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:01:14.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:01:14.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:14.478 -07 000000547 INF: FPGA: Recv ZSGSRD 35830
17-03-17 20:01:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:14.488 -07 000000626 INF: FPGA: Recv ZPIEZORD 31844
17-03-17 20:01:14.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:14.498 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -8.8 V.
17-03-17 20:01:14.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35833 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35825 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:14.498 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35833, posNoise = 7, negNoise = 8
17-03-17 20:01:14.498 -07 000000610 INF: Z Motor: After move to -0.170501, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:14.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:01:14.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:14.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:14.498 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:14.498 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:14.498 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:14.498 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:14.498 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:14.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:14.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:14.508 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:14.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:14.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:14.508 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:14.508 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:14.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:01:14.508 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:14.518 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:01:14.518 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:01:14.528 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:01:14.528 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:01:14.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37423 150\n [Camera]
17-03-17 20:01:14.728 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:15.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:15.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:15.138 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:15.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:15.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:15.138 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:15.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:15.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:15.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:15.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:15.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37423 793
17-03-17 20:01:15.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:15.538 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:01:15.538 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:01:15.538 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:15.538 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:01:15.538 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:01:15.538 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:15.538 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:15.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:01:15.548 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:15.548 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:01:15.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:15.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:15.678 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:15.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:15.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:15.678 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:15.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:01:15.678 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:15.678 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:15.678 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:01:15.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:15.868 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:15.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37423 150' command took 2 ms to send, 1332 ms to get response, and 1339 ms overall
17-03-17 20:01:15.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:15.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170522145686855. ------
17-03-17 20:01:15.868 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:15.868 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17704 mm
17-03-17 20:01:15.868 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:15.868 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:01:15.878 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:01:15.878 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:15.878 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38674, sync = True, waitForSettling = False)
17-03-17 20:01:15.878 -07 000000459 INF: Z Motor: Moving to -0.177038 mm, started at -0.170522 mm, distance = -6.52 um
17-03-17 20:01:15.878 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:15.878 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:15.878 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:01:15.888 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:15.888 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:15.888 -07 000000608 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:15.888 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:15.888 -07 000000608 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:01:15.898 -07 000000459 INF: FPGA: Xmit ZDACW 38674\n [Z Motor]
17-03-17 20:01:15.898 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:15.908 -07 000000459 INF: FPGA: 'ZDACW 38674' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:15.908 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:15.918 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:15.918 -07 000000478 INF: FPGA: Recv ZDACR 38674
17-03-17 20:01:15.928 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:15.928 -07 000000459 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:01:16.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:01:16.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:01:16.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:16.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:01:16.078 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:01:16.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:16.088 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:16.088 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:01:16.088 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:16.088 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:01:16.088 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:16.098 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:01:16.278 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:01:16.278 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:01:16.328 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:16.328 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:01:16.338 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:01:16.338 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:16.338 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:01:16.338 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:01:16.738 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:16.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:17.128 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.008536,
17-03-17 20:01:17.288 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:17.288 -07 000000415 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:01:17.298 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.298 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:17.318 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:17.318 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:17.318 -07 000000608 INF: Y Motor: Moved to 64.8789 after 1443 ms (table move)
17-03-17 20:01:17.318 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177038 mm (DAC = 38674)
17-03-17 20:01:17.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.318 -07 000000012 INF: FPGA: Recv ZSGSRD 36844
17-03-17 20:01:17.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:17.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36847
17-03-17 20:01:17.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36852
17-03-17 20:01:17.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.348 -07 000000608 INF: FPGA: Recv ZSGSRD 36850
17-03-17 20:01:17.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36849
17-03-17 20:01:17.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36855
17-03-17 20:01:17.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.378 -07 000000012 INF: FPGA: Recv ZSGSRD 36848
17-03-17 20:01:17.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.388 -07 000000448 INF: FPGA: Recv ZSGSRD 36843
17-03-17 20:01:17.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.398 -07 000000012 INF: FPGA: Recv ZSGSRD 36840
17-03-17 20:01:17.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:17.408 -07 000000448 INF: FPGA: Recv ZSGSRD 36849
17-03-17 20:01:17.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.418 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:17.418 -07 000000462 INF: FPGA: Recv ZPIEZORD 33170
17-03-17 20:01:17.428 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -8.2 V.
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36848 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36848 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36840 (-176.1 uncal um), Max = 36855 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36848, posNoise = 7, negNoise = 8
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: After move to -0.177038, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 104 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:01:17.428 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:17.478 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:01:17.478 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:17.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:17.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:17.478 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:17.478 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:17.478 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:17.478 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:17.488 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:17.488 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:17.488 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:17.488 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:17.498 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:01:17.498 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:01:17.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:17.538 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:17.738 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:17.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:17.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:17.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:01:17.778 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:17.778 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:17.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:01:17.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:01:17.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:17.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:17.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:17.878 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:17.878 -07 000000626 INF: Autofocus start
17-03-17 20:01:17.878 -07 000000626 INF: MeasureProfile start
17-03-17 20:01:17.878 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:17.888 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:17.888 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:17.898 -07 000000626 INF: MeasureProfile done
17-03-17 20:01:17.898 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:17.898 -07 000000626 INF: Autofocus finished
17-03-17 20:01:18.088 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:18.088 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:18.088 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.177042721010743. ----------
17-03-17 20:01:18.088 -07 000000610 INF: Cycle	33	Tile	7	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:18.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37189, sync = True, waitForSettling = True)
17-03-17 20:01:18.098 -07 000000610 INF: Z Motor: Moving to -0.170240 mm, started at -0.177043 mm, distance = 6.80 um
17-03-17 20:01:18.098 -07 000000610 INF: FPGA: Xmit ZDACW 37189\n [Z Motor]
17-03-17 20:01:18.098 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:01:18.108 -07 000000610 INF: FPGA: 'ZDACW 37189' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:18.108 -07 000000626 INF: FPGA: Recv ZDACR 37189
17-03-17 20:01:18.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.268 -07 000000459 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:01:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35790
17-03-17 20:01:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.288 -07 000000462 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:01:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35786
17-03-17 20:01:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:01:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.318 -07 000000626 INF: FPGA: Recv ZSGSRD 35789
17-03-17 20:01:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:01:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.338 -07 000000593 INF: FPGA: Recv ZSGSRD 35798
17-03-17 20:01:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35787
17-03-17 20:01:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:18.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:01:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:18.368 -07 000000478 INF: FPGA: Recv ZPIEZORD 31770
17-03-17 20:01:18.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:18.378 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.9 V.
17-03-17 20:01:18.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35791 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35792 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35786 (-169.3 uncal um), Max = 35798 (-169.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:18.378 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35791, posNoise = 7, negNoise = 5
17-03-17 20:01:18.378 -07 000000610 INF: Z Motor: After move to -0.170240, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:18.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:01:18.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:18.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:18.378 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:18.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:18.378 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:18.378 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:18.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:18.378 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:18.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:18.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:18.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:18.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:18.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:01:18.388 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:18.388 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:01:18.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:18.398 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:18.398 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:01:18.398 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:01:18.398 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:18.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37365 150\n [Camera]
17-03-17 20:01:18.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:19.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:19.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:19.008 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:19.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:19.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1128973584, 0x0, 391868352) start.
17-03-17 20:01:19.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:19.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:19.008 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:19.008 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:19.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 20:01:19.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37365 793
17-03-17 20:01:19.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:19.378 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:01:19.388 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:01:19.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:19.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1128973584, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:01:19.388 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:01:19.388 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:19.388 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:19.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:19.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:01:19.398 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:01:19.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:19.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:19.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:19.548 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:19.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 20:01:19.548 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:19.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:19.548 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:19.548 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:19.548 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:01:19.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:01:19.738 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:19.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37365 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:01:19.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:19.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170252328776901. ------
17-03-17 20:01:19.858 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:19.858 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17674 mm
17-03-17 20:01:19.858 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:19.858 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38609, sync = True, waitForSettling = False)
17-03-17 20:01:19.858 -07 000000626 INF: Z Motor: Moving to -0.176741 mm, started at -0.170252 mm, distance = -6.49 um
17-03-17 20:01:19.858 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:01:19.858 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:01:19.868 -07 000000626 INF: FPGA: Xmit ZDACW 38609\n [Z Motor]
17-03-17 20:01:19.868 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:19.868 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 20:01:19.868 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:01:19.878 -07 000000626 INF: FPGA: 'ZDACW 38609' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:19.878 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:19.878 -07 000000459 INF: FPGA: Recv ZDACR 38609
17-03-17 20:01:19.888 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:19.888 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:19.888 -07 000000626 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 20:01:19.888 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:01:19.898 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:19.898 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:01:19.898 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:19.898 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:19.898 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:01:19.908 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:19.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:01:19.938 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:01:19.938 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:19.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:01:19.938 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:01:19.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:19.938 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:19.948 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:01:19.948 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:01:19.948 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:01:20.098 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:20.098 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-17 20:01:20.278 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:01:20.278 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:01:20.318 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:20.318 -07 000000480 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:01:20.328 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:20.328 -07 000000462 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:20.328 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:01:20.328 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 20:01:21.278 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:21.278 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:01:21.288 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:21.288 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:21.308 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:21.308 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:01:21.308 -07 000000462 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 20:01:21.318 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176741 mm (DAC = 38609)
17-03-17 20:01:21.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36806
17-03-17 20:01:21.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:21.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.328 -07 000000462 INF: FPGA: Recv ZSGSRD 36808
17-03-17 20:01:21.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.338 -07 000000593 INF: FPGA: Recv ZSGSRD 36801
17-03-17 20:01:21.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.348 -07 000000462 INF: FPGA: Recv ZSGSRD 36800
17-03-17 20:01:21.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.358 -07 000000593 INF: FPGA: Recv ZSGSRD 36802
17-03-17 20:01:21.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36799
17-03-17 20:01:21.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:21.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.388 -07 000000462 INF: FPGA: Recv ZSGSRD 36794
17-03-17 20:01:21.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.398 -07 000000480 INF: FPGA: Recv ZSGSRD 36803
17-03-17 20:01:21.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.408 -07 000000431 INF: FPGA: Recv ZSGSRD 36807
17-03-17 20:01:21.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:21.418 -07 000000459 INF: FPGA: Recv ZSGSRD 36796
17-03-17 20:01:21.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.428 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:21.428 -07 000000462 INF: FPGA: Recv ZPIEZORD 33163
17-03-17 20:01:21.438 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.1 V.
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36802 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36802 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36794 (-175.8 uncal um), Max = 36808 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36802, posNoise = 6, negNoise = 8
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: After move to -0.176741, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: Settle wait time = 1453 ms, measure time = 118 ms (allowed 150 ms), total time = 1571 ms
17-03-17 20:01:21.438 -07 000000012 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:21.478 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 20:01:21.478 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:21.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:21.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:21.478 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:21.478 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:21.478 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:21.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:21.488 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:01:21.488 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:21.488 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:21.488 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:21.488 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:21.488 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:01:21.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:21.538 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:21.738 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:21.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:21.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:21.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:21.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:21.778 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:21.778 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:21.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:01:21.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:01:21.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:21.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:21.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:21.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:21.878 -07 000000626 INF: Autofocus start
17-03-17 20:01:21.878 -07 000000626 INF: MeasureProfile start
17-03-17 20:01:21.878 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:21.878 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:21.888 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:21.888 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:21.888 -07 000000626 INF: MeasureProfile done
17-03-17 20:01:21.888 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:01:21.888 -07 000000626 INF: Autofocus finished
17-03-17 20:01:22.088 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:22.088 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:22.098 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176747207252222. ----------
17-03-17 20:01:22.098 -07 000000610 INF: Cycle	33	Tile	8	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:22.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37106, sync = True, waitForSettling = True)
17-03-17 20:01:22.098 -07 000000610 INF: Z Motor: Moving to -0.169860 mm, started at -0.176747 mm, distance = 6.89 um
17-03-17 20:01:22.098 -07 000000610 INF: FPGA: Xmit ZDACW 37106\n [Z Motor]
17-03-17 20:01:22.098 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:01:22.108 -07 000000610 INF: FPGA: 'ZDACW 37106' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:22.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:22.108 -07 000000593 INF: FPGA: Recv ZDACR 37106
17-03-17 20:01:22.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35732
17-03-17 20:01:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:01:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.288 -07 000000593 INF: FPGA: Recv ZSGSRD 35730
17-03-17 20:01:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.298 -07 000000431 INF: FPGA: Recv ZSGSRD 35728
17-03-17 20:01:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:01:22.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.318 -07 000000626 INF: FPGA: Recv ZSGSRD 35725
17-03-17 20:01:22.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.328 -07 000000593 INF: FPGA: Recv ZSGSRD 35731
17-03-17 20:01:22.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35736
17-03-17 20:01:22.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.348 -07 000000480 INF: FPGA: Recv ZSGSRD 35737
17-03-17 20:01:22.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:22.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35730
17-03-17 20:01:22.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:22.368 -07 000000626 INF: FPGA: Recv ZPIEZORD 31715
17-03-17 20:01:22.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:22.378 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -8.9 V.
17-03-17 20:01:22.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35731 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35730 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35725 (-169.0 uncal um), Max = 35737 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:22.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35731, posNoise = 6, negNoise = 6
17-03-17 20:01:22.378 -07 000000610 INF: Z Motor: After move to -0.169860, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:22.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:01:22.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:22.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:22.378 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:22.378 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:22.378 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:22.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:22.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:22.378 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:22.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:01:22.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:22.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:22.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:22.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:22.388 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:22.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:22.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:22.398 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:01:22.398 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:01:22.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:01:22.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:01:22.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37283 150\n [Camera]
17-03-17 20:01:22.488 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.994908,
17-03-17 20:01:22.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:23.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:23.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:23.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:23.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:23.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:23.018 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:23.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:23.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:01:23.018 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:23.018 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:01:23.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37283 793
17-03-17 20:01:23.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:23.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:01:23.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:01:23.398 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:23.398 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:23.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:01:23.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:01:23.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:23.408 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:01:23.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:23.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:01:23.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:23.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:23.548 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:23.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:23.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:23.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:23.558 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:23.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:01:23.558 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:23.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:01:23.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:23.738 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:23.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37283 150' command took 2 ms to send, 1327 ms to get response, and 1339 ms overall
17-03-17 20:01:23.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:23.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169866876048396. ------
17-03-17 20:01:23.868 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:23.868 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17625 mm
17-03-17 20:01:23.868 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:23.868 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:01:23.868 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:01:23.868 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38502, sync = True, waitForSettling = False)
17-03-17 20:01:23.868 -07 000000431 INF: Z Motor: Moving to -0.176251 mm, started at -0.169867 mm, distance = -6.38 um
17-03-17 20:01:23.868 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:23.878 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:23.878 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:23.878 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:01:23.888 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:01:23.888 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:23.888 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:23.888 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:01:23.888 -07 000000431 INF: FPGA: Xmit ZDACW 38502\n [Z Motor]
17-03-17 20:01:23.888 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:01:23.898 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:23.898 -07 000000431 INF: FPGA: 'ZDACW 38502' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:01:23.908 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:23.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:23.918 -07 000000547 INF: FPGA: Recv ZDACR 38502
17-03-17 20:01:23.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:23.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:01:23.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:01:23.958 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:01:23.958 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:23.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:01:23.958 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:01:23.958 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:23.958 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:23.968 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:23.968 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:01:23.968 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:01:24.098 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:24.098 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:01:24.278 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:01:24.278 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:01:24.318 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:24.318 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:01:24.328 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:24.328 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:24.328 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:01:24.328 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 20:01:25.278 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:25.278 -07 000000626 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:01:25.288 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:25.288 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:25.308 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:25.308 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:25.308 -07 000000462 INF: Y Motor: Moved to 66.5391 after 1439 ms (table move)
17-03-17 20:01:25.308 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176251 mm (DAC = 38502)
17-03-17 20:01:25.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36728
17-03-17 20:01:25.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:25.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.318 -07 000000462 INF: FPGA: Recv ZSGSRD 36728
17-03-17 20:01:25.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.328 -07 000000608 INF: FPGA: Recv ZSGSRD 36727
17-03-17 20:01:25.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.338 -07 000000462 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:01:25.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.348 -07 000000593 INF: FPGA: Recv ZSGSRD 36728
17-03-17 20:01:25.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.358 -07 000000480 INF: FPGA: Recv ZSGSRD 36733
17-03-17 20:01:25.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:01:25.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.378 -07 000000480 INF: FPGA: Recv ZSGSRD 36719
17-03-17 20:01:25.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.388 -07 000000480 INF: FPGA: Recv ZSGSRD 36722
17-03-17 20:01:25.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:25.398 -07 000000012 INF: FPGA: Recv ZSGSRD 36727
17-03-17 20:01:25.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.408 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:25.408 -07 000000012 INF: FPGA: Recv ZPIEZORD 33032
17-03-17 20:01:25.418 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36727 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36719 (-175.3 uncal um), Max = 36733 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36727, posNoise = 6, negNoise = 8
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: After move to -0.176251, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:01:25.418 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:25.468 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:01:25.468 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:25.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:25.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:25.468 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:25.468 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:25.468 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:25.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:25.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:25.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:25.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:25.478 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:25.488 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:01:25.488 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:01:25.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:25.538 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:25.738 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:25.778 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:25.778 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:25.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:01:25.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:01:25.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:25.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:25.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:25.878 -07 000000547 INF: Autofocus start
17-03-17 20:01:25.878 -07 000000547 INF: MeasureProfile start
17-03-17 20:01:25.878 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:25.878 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:25.888 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:25.888 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:25.898 -07 000000547 INF: MeasureProfile done
17-03-17 20:01:25.898 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:01:25.898 -07 000000547 INF: Autofocus finished
17-03-17 20:01:26.088 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:26.088 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:26.088 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.17626539134159. ----------
17-03-17 20:01:26.088 -07 000000610 INF: Cycle	33	Tile	9	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:26.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37035, sync = True, waitForSettling = True)
17-03-17 20:01:26.098 -07 000000610 INF: Z Motor: Moving to -0.169535 mm, started at -0.176265 mm, distance = 6.73 um
17-03-17 20:01:26.098 -07 000000610 INF: FPGA: Xmit ZDACW 37035\n [Z Motor]
17-03-17 20:01:26.098 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:01:26.108 -07 000000610 INF: FPGA: 'ZDACW 37035' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:26.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:26.108 -07 000000415 INF: FPGA: Recv ZDACR 37035
17-03-17 20:01:26.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.268 -07 000000459 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:01:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:01:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:01:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:01:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.308 -07 000000459 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:01:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.318 -07 000000415 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:01:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:01:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:01:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:01:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:26.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:01:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:26.368 -07 000000547 INF: FPGA: Recv ZPIEZORD 31663
17-03-17 20:01:26.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:26.378 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 20:01:26.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:01:26.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 4, negNoise = 4
17-03-17 20:01:26.378 -07 000000610 INF: Z Motor: After move to -0.169535, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:26.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:01:26.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:26.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:26.378 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:26.378 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:26.378 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:26.378 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:26.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:26.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:26.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:01:26.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:26.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 20:01:26.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:26.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:26.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:26.388 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:26.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:26.398 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:01:26.398 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:26.398 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:26.398 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:01:26.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37211 150\n [Camera]
17-03-17 20:01:26.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:26.738 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:26.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:27.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:27.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:27.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:27.008 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:27.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:01:27.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:27.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:27.008 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:27.008 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:27.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:01:27.198 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37211 793
17-03-17 20:01:27.348 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:27.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:01:27.388 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:01:27.388 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:27.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:01:27.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:01:27.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:27.388 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:27.388 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:27.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:01:27.398 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:01:27.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:27.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:27.548 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:27.548 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:27.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:01:27.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:27.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:27.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:27.548 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:27.548 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 20:01:27.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:27.738 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:27.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37211 150' command took 2 ms to send, 1333 ms to get response, and 1338 ms overall
17-03-17 20:01:27.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:27.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169545665441308. ------
17-03-17 20:01:27.738 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:27.738 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17635 mm
17-03-17 20:01:27.738 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:27.748 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:27.748 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:01:27.748 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:01:27.748 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:01:27.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:27.748 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38523, sync = True, waitForSettling = False)
17-03-17 20:01:27.748 -07 000000547 INF: Z Motor: Moving to -0.176347 mm, started at -0.169546 mm, distance = -6.80 um
17-03-17 20:01:27.748 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:01:27.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:27.758 -07 000000547 INF: FPGA: Xmit ZDACW 38523\n [Z Motor]
17-03-17 20:01:27.758 -07 000000431 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:27.758 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:01:27.758 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:27.758 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:01:27.768 -07 000000547 INF: FPGA: 'ZDACW 38523' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:01:27.768 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:27.778 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:27.788 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:27.788 -07 000000448 INF: FPGA: Recv ZDACR 38523
17-03-17 20:01:27.798 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:27.798 -07 000000547 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:01:27.848 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.990831,
17-03-17 20:01:27.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:01:27.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:01:27.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:01:27.948 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:27.948 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:01:27.948 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:27.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:27.948 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:01:27.948 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:27.958 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:01:27.968 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:27.968 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-17 20:01:28.148 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:01:28.148 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 394 ms overall
17-03-17 20:01:28.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:28.188 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:01:28.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:28.198 -07 000000431 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:28.198 -07 000000431 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:01:28.198 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 20:01:29.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:29.148 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:01:29.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:29.158 -07 000000431 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:29.178 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:29.178 -07 000000431 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:29.178 -07 000000431 INF: Y Motor: Moved to 67.3721 after 1427 ms (table move)
17-03-17 20:01:29.178 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176347 mm (DAC = 38523)
17-03-17 20:01:29.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36737
17-03-17 20:01:29.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:29.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.188 -07 000000431 INF: FPGA: Recv ZSGSRD 36737
17-03-17 20:01:29.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36739
17-03-17 20:01:29.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.208 -07 000000547 INF: FPGA: Recv ZSGSRD 36743
17-03-17 20:01:29.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.218 -07 000000547 INF: FPGA: Recv ZSGSRD 36741
17-03-17 20:01:29.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36752
17-03-17 20:01:29.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.238 -07 000000448 INF: FPGA: Recv ZSGSRD 36735
17-03-17 20:01:29.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.248 -07 000000448 INF: FPGA: Recv ZSGSRD 36738
17-03-17 20:01:29.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:01:29.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:29.268 -07 000000448 INF: FPGA: Recv ZSGSRD 36752
17-03-17 20:01:29.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.278 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:29.278 -07 000000448 INF: FPGA: Recv ZPIEZORD 33153
17-03-17 20:01:29.288 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.0 V.
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36741 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36735 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36741, posNoise = 11, negNoise = 6
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: After move to -0.176347, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: Settle wait time = 1429 ms, measure time = 104 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:01:29.288 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:29.338 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:01:29.338 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:29.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:29.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:29.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:29.338 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:29.338 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:29.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:29.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:01:29.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:29.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:29.348 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:29.348 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:29.348 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:01:29.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:29.398 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:29.598 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:29.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:29.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:29.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:01:29.638 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:29.638 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:29.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:01:29.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:01:29.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:29.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:29.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:29.738 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:29.738 -07 000000431 INF: Autofocus start
17-03-17 20:01:29.738 -07 000000431 INF: MeasureProfile start
17-03-17 20:01:29.738 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:29.748 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:29.748 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:29.748 -07 000000431 INF: MeasureProfile done
17-03-17 20:01:29.748 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:01:29.758 -07 000000431 INF: Autofocus finished
17-03-17 20:01:29.948 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:29.948 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:29.948 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176355330311574. ----------
17-03-17 20:01:29.948 -07 000000610 INF: Cycle	33	Tile	10	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:29.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37056, sync = True, waitForSettling = True)
17-03-17 20:01:29.958 -07 000000610 INF: Z Motor: Moving to -0.169631 mm, started at -0.176355 mm, distance = 6.72 um
17-03-17 20:01:29.958 -07 000000610 INF: FPGA: Xmit ZDACW 37056\n [Z Motor]
17-03-17 20:01:29.958 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:01:29.968 -07 000000610 INF: FPGA: 'ZDACW 37056' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:29.968 -07 000000448 INF: FPGA: Recv ZDACR 37056
17-03-17 20:01:29.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:29.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:30.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.128 -07 000000448 INF: FPGA: Recv ZSGSRD 35691
17-03-17 20:01:30.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:30.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.138 -07 000000448 INF: FPGA: Recv ZSGSRD 35698
17-03-17 20:01:30.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:01:30.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35695
17-03-17 20:01:30.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.168 -07 000000448 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:01:30.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.178 -07 000000501 INF: FPGA: Recv ZSGSRD 35702
17-03-17 20:01:30.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.188 -07 000000448 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:01:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35689
17-03-17 20:01:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35695
17-03-17 20:01:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:30.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35694
17-03-17 20:01:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:30.228 -07 000000431 INF: FPGA: Recv ZPIEZORD 31700
17-03-17 20:01:30.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:30.238 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -8.8 V.
17-03-17 20:01:30.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35696 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35696 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35702 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:01:30.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35696, posNoise = 6, negNoise = 7
17-03-17 20:01:30.238 -07 000000610 INF: Z Motor: After move to -0.169631, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:30.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:01:30.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:30.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:30.238 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:30.238 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:30.238 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:30.238 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:30.238 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:30.238 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:30.238 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:30.238 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:30.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:30.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:30.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:30.248 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:30.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:01:30.248 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:30.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:01:30.258 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:01:30.258 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:30.258 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:01:30.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37233 150\n [Camera]
17-03-17 20:01:30.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:30.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:30.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:30.868 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:30.868 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:30.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:30.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:30.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:30.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:30.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:30.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:31.058 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37233 793
17-03-17 20:01:31.208 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:31.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:01:31.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:01:31.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:31.258 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:01:31.258 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:01:31.258 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:31.268 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:31.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:31.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:01:31.278 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:01:31.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:31.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:31.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:31.408 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:31.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:01:31.408 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:31.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:31.408 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:31.408 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:31.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:01:31.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:01:31.598 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:31.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37233 150' command took 2 ms to send, 1337 ms to get response, and 1340 ms overall
17-03-17 20:01:31.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:31.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169642028623434. ------
17-03-17 20:01:31.728 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:31.728 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17596 mm
17-03-17 20:01:31.728 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:31.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:31.728 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:01:31.728 -07 000000593 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:01:31.728 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38438, sync = True, waitForSettling = False)
17-03-17 20:01:31.728 -07 000000462 INF: Z Motor: Moving to -0.175958 mm, started at -0.169642 mm, distance = -6.32 um
17-03-17 20:01:31.738 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:31.738 -07 000000462 INF: FPGA: Xmit ZDACW 38438\n [Z Motor]
17-03-17 20:01:31.738 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:01:31.738 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:31.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:31.748 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:31.748 -07 000000462 INF: FPGA: 'ZDACW 38438' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:01:31.748 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:01:31.758 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:31.758 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:01:31.758 -07 000000593 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:31.758 -07 000000593 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:31.758 -07 000000593 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:01:31.768 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:31.768 -07 000000459 INF: FPGA: Recv ZDACR 38438
17-03-17 20:01:31.778 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:31.778 -07 000000462 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:01:31.778 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:31.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:01:31.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:01:31.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:31.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:01:31.818 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:01:31.818 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:31.818 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:31.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:31.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:01:31.828 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:01:31.958 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:31.958 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:01:32.148 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:01:32.148 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:01:32.188 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:32.188 -07 000000448 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:01:32.198 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:32.198 -07 000000593 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:32.198 -07 000000593 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:01:32.198 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:01:33.148 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:33.148 -07 000000551 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:01:33.158 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:33.158 -07 000000593 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:33.168 -07 000000593 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:33.168 -07 000000593 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:01:33.178 -07 000000593 INF: Y Motor: Moved to 68.2056 after 1444 ms (table move)
17-03-17 20:01:33.178 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175958 mm (DAC = 38438)
17-03-17 20:01:33.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36687
17-03-17 20:01:33.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:33.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.188 -07 000000626 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:01:33.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.208 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.989471,
17-03-17 20:01:33.208 -07 000000551 INF: FPGA: Recv ZSGSRD 36684
17-03-17 20:01:33.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:33.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.238 -07 000000448 INF: FPGA: Recv ZSGSRD 36678
17-03-17 20:01:33.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:33.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.268 -07 000000551 INF: FPGA: Recv ZSGSRD 36672
17-03-17 20:01:33.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:33.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36683
17-03-17 20:01:33.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36680
17-03-17 20:01:33.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.298 -07 000000462 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:01:33.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36674
17-03-17 20:01:33.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:33.318 -07 000000593 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:01:33.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:33.328 -07 000000551 INF: FPGA: Recv ZPIEZORD 33013
17-03-17 20:01:33.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.1 V.
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36680 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36681 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36672 (-175.0 uncal um), Max = 36687 (-175.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36680, posNoise = 7, negNoise = 8
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: After move to -0.175958, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: Settle wait time = 1447 ms, measure time = 157 ms (allowed 150 ms), total time = 1604 ms
17-03-17 20:01:33.338 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 20:01:33.338 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:01:33.338 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:33.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:33.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:33.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:33.338 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:33.338 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:33.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:33.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:33.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:33.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:33.348 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:33.358 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:01:33.358 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:01:33.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:33.408 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:33.608 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:33.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:33.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:33.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:33.648 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:33.648 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:33.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 286 ms to get response, and 288 ms overall
17-03-17 20:01:33.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:01:33.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:33.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:33.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:01:33.848 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:33.848 -07 000000431 INF: Autofocus start
17-03-17 20:01:33.848 -07 000000431 INF: MeasureProfile start
17-03-17 20:01:33.848 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:33.858 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:33.858 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:33.878 -07 000000431 INF: MeasureProfile done
17-03-17 20:01:33.878 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:01:33.878 -07 000000431 INF: Autofocus finished
17-03-17 20:01:34.058 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:34.058 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:34.058 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175963453370927. ----------
17-03-17 20:01:34.058 -07 000000610 INF: Cycle	33	Tile	11	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:34.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36935, sync = True, waitForSettling = True)
17-03-17 20:01:34.068 -07 000000610 INF: Z Motor: Moving to -0.169078 mm, started at -0.175963 mm, distance = 6.89 um
17-03-17 20:01:34.068 -07 000000610 INF: FPGA: Xmit ZDACW 36935\n [Z Motor]
17-03-17 20:01:34.068 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:01:34.078 -07 000000610 INF: FPGA: 'ZDACW 36935' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:34.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:34.078 -07 000000608 INF: FPGA: Recv ZDACR 36935
17-03-17 20:01:34.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35608
17-03-17 20:01:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:01:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:01:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:01:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35612
17-03-17 20:01:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35612
17-03-17 20:01:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:01:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.308 -07 000000431 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:01:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35605
17-03-17 20:01:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:34.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35611
17-03-17 20:01:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:34.338 -07 000000551 INF: FPGA: Recv ZPIEZORD 31590
17-03-17 20:01:34.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:34.348 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.9 V.
17-03-17 20:01:34.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35609 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35612 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:34.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35609, posNoise = 3, negNoise = 5
17-03-17 20:01:34.348 -07 000000610 INF: Z Motor: After move to -0.169078, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:34.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:01:34.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:34.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:34.348 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:34.348 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:34.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:34.348 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:34.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:34.348 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:34.348 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:34.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:34.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:34.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:34.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:34.358 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:34.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:01:34.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:34.358 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:01:34.358 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:01:34.368 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:01:34.368 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:01:34.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37112 150\n [Camera]
17-03-17 20:01:34.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:01:34.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:34.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:34.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:34.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:34.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:34.978 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:34.988 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:34.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:01:34.988 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:34.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:01:35.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37112 796
17-03-17 20:01:35.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:35.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:01:35.358 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:01:35.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:35.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:01:35.358 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:01:35.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:35.368 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:35.368 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:01:35.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:35.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:01:35.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:35.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:35.518 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:35.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:35.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:35.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:35.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:35.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:35.528 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:35.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:35.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:35.708 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:35.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37112 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:01:35.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:35.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.169083122167101. ------
17-03-17 20:01:35.708 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17569 mm
17-03-17 20:01:35.708 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:35.708 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:35.718 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:01:35.718 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38379, sync = True, waitForSettling = False)
17-03-17 20:01:35.718 -07 000000431 INF: Z Motor: Moving to -0.175688 mm, started at -0.169083 mm, distance = -6.60 um
17-03-17 20:01:35.718 -07 000000431 INF: FPGA: Xmit ZDACW 38379\n [Z Motor]
17-03-17 20:01:35.718 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:35.718 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:01:35.838 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:01:35.838 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:01:35.838 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:35.838 -07 000000431 INF: FPGA: 'ZDACW 38379' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 20:01:35.838 -07 000000448 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:01:35.848 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:01:35.848 -07 000000486 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:35.848 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:35.848 -07 000000486 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:01:35.848 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:35.848 -07 000000448 INF: FPGA: Recv ZDACR 38379
17-03-17 20:01:35.858 -07 000000431 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:01:35.858 -07 000000431 INF: Z Motor: MoveAbsStepped took 139 ms (did NOT wait for settling yet))
17-03-17 20:01:35.858 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:35.868 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:35.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:01:35.918 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:01:35.918 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:35.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:01:35.918 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:01:35.918 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:35.918 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:35.928 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:35.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:01:35.928 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:01:36.058 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:36.058 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 20:01:36.248 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:01:36.248 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:01:36.278 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:36.278 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:01:36.288 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:36.288 -07 000000486 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:36.288 -07 000000486 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:01:36.288 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.093 mm/sec
17-03-17 20:01:36.738 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:36.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:37.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:37.238 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:01:37.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:37.248 -07 000000486 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:37.268 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:37.268 -07 000000486 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:37.268 -07 000000486 INF: Y Motor: Moved to 69.0273 after 1552 ms (table move)
17-03-17 20:01:37.268 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175688 mm (DAC = 38379)
17-03-17 20:01:37.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36645
17-03-17 20:01:37.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:37.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.278 -07 000000547 INF: FPGA: Recv ZSGSRD 36645
17-03-17 20:01:37.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36643
17-03-17 20:01:37.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.298 -07 000000012 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:01:37.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.308 -07 000000486 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:01:37.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36635
17-03-17 20:01:37.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36637
17-03-17 20:01:37.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36644
17-03-17 20:01:37.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36639
17-03-17 20:01:37.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:37.358 -07 000000012 INF: FPGA: Recv ZSGSRD 36644
17-03-17 20:01:37.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.368 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:37.368 -07 000000551 INF: FPGA: Recv ZPIEZORD 32926
17-03-17 20:01:37.378 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.2 V.
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36641 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36630 (-174.8 uncal um), Max = 36645 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 5, negNoise = 10
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: After move to -0.175688, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: Settle wait time = 1555 ms, measure time = 105 ms (allowed 150 ms), total time = 1660 ms
17-03-17 20:01:37.378 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:37.428 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 20:01:37.428 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:37.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:37.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:37.428 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:37.428 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:37.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:37.428 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:37.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:37.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:37.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:37.438 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:37.438 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:37.438 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:01:37.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:37.498 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:37.698 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:37.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:37.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:37.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:37.738 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:37.738 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:37.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 294 ms overall
17-03-17 20:01:37.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:01:37.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:37.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:37.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:37.838 -07 000000478 INF: Autofocus start
17-03-17 20:01:37.838 -07 000000478 INF: MeasureProfile start
17-03-17 20:01:37.838 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:37.848 -07 000000478 INF: MeasureProfile done
17-03-17 20:01:37.848 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:37.848 -07 000000478 INF: Autofocus finished
17-03-17 20:01:37.848 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:37.848 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 14 ms overall
17-03-17 20:01:37.848 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:38.058 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:38.058 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 20:01:38.058 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175706484885256. ----------
17-03-17 20:01:38.058 -07 000000610 INF: Cycle	33	Tile	12	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:38.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = True)
17-03-17 20:01:38.068 -07 000000610 INF: Z Motor: Moving to -0.168890 mm, started at -0.175706 mm, distance = 6.82 um
17-03-17 20:01:38.068 -07 000000610 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-17 20:01:38.068 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:01:38.078 -07 000000610 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:38.078 -07 000000478 INF: FPGA: Recv ZDACR 36894
17-03-17 20:01:38.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.238 -07 000000012 INF: FPGA: Recv ZSGSRD 35584
17-03-17 20:01:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35580
17-03-17 20:01:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35580
17-03-17 20:01:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35579
17-03-17 20:01:38.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:38.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35583
17-03-17 20:01:38.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.298 -07 000000012 INF: FPGA: Recv ZSGSRD 35578
17-03-17 20:01:38.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.308 -07 000000459 INF: FPGA: Recv ZSGSRD 35581
17-03-17 20:01:38.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.318 -07 000000478 INF: FPGA: Recv ZSGSRD 35583
17-03-17 20:01:38.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35585
17-03-17 20:01:38.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:38.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:38.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35579
17-03-17 20:01:38.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:38.348 -07 000000501 INF: FPGA: Recv ZPIEZORD 31545
17-03-17 20:01:38.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:38.358 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.9 V.
17-03-17 20:01:38.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35578 (-168.0 uncal um), Max = 35585 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:01:38.358 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 4, negNoise = 3
17-03-17 20:01:38.358 -07 000000610 INF: Z Motor: After move to -0.168890, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:38.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 20:01:38.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:38.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:38.358 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:38.358 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:38.358 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:38.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:38.358 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:38.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:38.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:38.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:38.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:38.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:38.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:01:38.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:38.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:38.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:38.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:01:38.378 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:01:38.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:38.378 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:38.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 37071 150\n [Camera]
17-03-17 20:01:38.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:38.588 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.026244,
17-03-17 20:01:38.988 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:38.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:38.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:38.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:38.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:01:38.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:38.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:38.988 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:38.988 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:38.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:01:39.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37071 793
17-03-17 20:01:39.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:39.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:01:39.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:01:39.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:01:39.378 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:01:39.378 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:39.378 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:39.388 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:39.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:01:39.388 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:39.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:01:39.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1140
17-03-17 20:01:39.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1140
17-03-17 20:01:39.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:39.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:39.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:01:39.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1140
17-03-17 20:01:39.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1140
17-03-17 20:01:39.528 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:39.528 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:39.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:01:39.718 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:39.718 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:39.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 37071 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:01:39.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:39.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168903244227132. ------
17-03-17 20:01:39.728 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:39.728 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17524 mm
17-03-17 20:01:39.728 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:39.728 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:01:39.728 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:01:39.728 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:39.728 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38282, sync = True, waitForSettling = False)
17-03-17 20:01:39.728 -07 000000478 INF: Z Motor: Moving to -0.175244 mm, started at -0.168903 mm, distance = -6.34 um
17-03-17 20:01:39.738 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:39.738 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:39.748 -07 000000478 INF: FPGA: Xmit ZDACW 38282\n [Z Motor]
17-03-17 20:01:39.748 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:01:39.758 -07 000000478 INF: FPGA: 'ZDACW 38282' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:01:39.758 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:39.758 -07 000000593 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:01:39.768 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 20:01:39.768 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:39.768 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:39.768 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:39.768 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:01:39.768 -07 000000482 INF: FPGA: Recv ZDACR 38282
17-03-17 20:01:39.778 -07 000000478 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:39.778 -07 000000478 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:01:39.778 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:39.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:01:39.928 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:01:39.928 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:39.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:01:39.928 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:01:39.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:39.938 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:39.938 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:39.938 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:01:39.938 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:01:40.738 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:40.738 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:01:40.738 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 1000 ms overall
17-03-17 20:01:40.738 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 950 ms to get response, and 967 ms overall
17-03-17 20:01:40.768 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:40.778 -07 000000415 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:01:40.778 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:40.778 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:40.778 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:01:40.778 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 968 ms, distance = 0.845 mm, average velocity = 0.873 mm/sec
17-03-17 20:01:41.728 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:41.728 -07 000000415 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:01:41.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.738 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:41.738 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:41.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:41.758 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:41.758 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:41.758 -07 000000626 INF: Y Motor: Moved to 69.8633 after 2028 ms (table move)
17-03-17 20:01:41.758 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175244 mm (DAC = 38282)
17-03-17 20:01:41.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36575
17-03-17 20:01:41.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:41.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.768 -07 000000012 INF: FPGA: Recv ZSGSRD 36570
17-03-17 20:01:41.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36570
17-03-17 20:01:41.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.788 -07 000000012 INF: FPGA: Recv ZSGSRD 36565
17-03-17 20:01:41.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.798 -07 000000626 INF: FPGA: Recv ZSGSRD 36570
17-03-17 20:01:41.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.808 -07 000000478 INF: FPGA: Recv ZSGSRD 36571
17-03-17 20:01:41.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36570
17-03-17 20:01:41.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.828 -07 000000626 INF: FPGA: Recv ZSGSRD 36568
17-03-17 20:01:41.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.838 -07 000000012 INF: FPGA: Recv ZSGSRD 36567
17-03-17 20:01:41.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:41.848 -07 000000626 INF: FPGA: Recv ZSGSRD 36569
17-03-17 20:01:41.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.858 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:41.858 -07 000000626 INF: FPGA: Recv ZPIEZORD 32840
17-03-17 20:01:41.868 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.3 V.
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36565 (-174.3 uncal um), Max = 36575 (-174.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 5, negNoise = 5
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: After move to -0.175244, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: Settle wait time = 2030 ms, measure time = 106 ms (allowed 150 ms), total time = 2136 ms
17-03-17 20:01:41.868 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:41.918 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2189 ms
17-03-17 20:01:41.918 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:41.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:41.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:41.918 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:41.918 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:41.928 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:41.928 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:41.928 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:41.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:41.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:41.928 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:41.938 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:41.938 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:01:41.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:41.978 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:42.178 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:42.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:42.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:42.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) start.
17-03-17 20:01:42.228 -07 000000478 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:01:42.228 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:42.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 20:01:42.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:01:42.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:42.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:42.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:42.328 -07 000000012 INF: Autofocus start
17-03-17 20:01:42.328 -07 000000012 INF: MeasureProfile start
17-03-17 20:01:42.328 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:42.328 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:42.338 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:42.338 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:42.338 -07 000000012 INF: MeasureProfile done
17-03-17 20:01:42.338 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:42.338 -07 000000012 INF: Autofocus finished
17-03-17 20:01:42.538 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:42.538 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:42.538 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175256790035333. ----------
17-03-17 20:01:42.538 -07 000000610 INF: Cycle	33	Tile	13	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:42.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36796, sync = True, waitForSettling = True)
17-03-17 20:01:42.548 -07 000000610 INF: Z Motor: Moving to -0.168441 mm, started at -0.175257 mm, distance = 6.82 um
17-03-17 20:01:42.548 -07 000000610 INF: FPGA: Xmit ZDACW 36796\n [Z Motor]
17-03-17 20:01:42.548 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:42.558 -07 000000610 INF: FPGA: 'ZDACW 36796' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:42.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:42.558 -07 000000478 INF: FPGA: Recv ZDACR 36796
17-03-17 20:01:42.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:42.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.718 -07 000000012 INF: FPGA: Recv ZSGSRD 35509
17-03-17 20:01:42.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35512
17-03-17 20:01:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.738 -07 000000012 INF: FPGA: Recv ZSGSRD 35513
17-03-17 20:01:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.748 -07 000000012 INF: FPGA: Recv ZSGSRD 35504
17-03-17 20:01:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.758 -07 000000012 INF: FPGA: Recv ZSGSRD 35511
17-03-17 20:01:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:01:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.778 -07 000000415 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:01:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.788 -07 000000415 INF: FPGA: Recv ZSGSRD 35509
17-03-17 20:01:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35508
17-03-17 20:01:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:42.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:01:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:42.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:42.828 -07 000000012 INF: FPGA: Recv ZPIEZORD 31453
17-03-17 20:01:42.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:42.838 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.0 V.
17-03-17 20:01:42.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35511 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35512 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35504 (-167.5 uncal um), Max = 35514 (-167.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:01:42.838 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35511, posNoise = 3, negNoise = 7
17-03-17 20:01:42.838 -07 000000610 INF: Z Motor: After move to -0.168441, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:42.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 20:01:42.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:42.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:42.838 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:42.838 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:42.838 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:42.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:42.838 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:42.838 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:42.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:42.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:42.838 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:42.838 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:42.848 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:42.848 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:42.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:42.848 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:42.858 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:42.858 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:01:42.858 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:01:42.858 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:01:42.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36973 150\n [Camera]
17-03-17 20:01:43.058 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:43.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:43.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:43.468 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:43.468 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:43.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:01:43.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:43.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:43.468 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:43.468 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:43.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:01:43.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36973 793
17-03-17 20:01:43.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:43.848 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:01:43.848 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:01:43.848 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:43.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:01:43.848 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:01:43.848 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:43.858 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:01:43.858 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:01:43.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:01:43.868 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:01:43.948 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.041198,
17-03-17 20:01:44.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:44.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:44.008 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:44.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:44.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:01:44.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:44.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:44.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:44.008 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:44.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:01:44.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:44.198 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:44.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36973 150' command took 2 ms to send, 1334 ms to get response, and 1339 ms overall
17-03-17 20:01:44.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:44.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168453549377208. ------
17-03-17 20:01:44.198 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:44.198 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17488 mm
17-03-17 20:01:44.198 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:44.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:01:44.408 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:01:44.408 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:44.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:01:44.408 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:01:44.408 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:44.418 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:44.418 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:01:44.418 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:01:44.418 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:01:44.428 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:01:44.428 -07 000000448 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:01:44.428 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:44.428 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:44.428 -07 000000459 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:01:44.428 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 230 ms overall
17-03-17 20:01:44.438 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:44.438 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:01:44.438 -07 000000448 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:44.438 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38202, sync = True, waitForSettling = False)
17-03-17 20:01:44.438 -07 000000459 INF: Z Motor: Moving to -0.174878 mm, started at -0.168454 mm, distance = -6.42 um
17-03-17 20:01:44.438 -07 000000448 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:44.438 -07 000000448 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:01:44.448 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:44.458 -07 000000459 INF: FPGA: Xmit ZDACW 38202\n [Z Motor]
17-03-17 20:01:45.238 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:01:45.238 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:45.238 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:01:45.238 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-17 20:01:45.238 -07 000000459 INF: FPGA: 'ZDACW 38202' command took 0 ms to send, 770 ms to get response, and 799 ms overall
17-03-17 20:01:45.238 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:45.238 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 780 ms to get response, and 797 ms overall
17-03-17 20:01:45.238 -07 000000415 INF: FPGA: Recv ZDACR 38202
17-03-17 20:01:45.248 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:45.248 -07 000000459 INF: Z Motor: MoveAbsStepped took 809 ms (did NOT wait for settling yet))
17-03-17 20:01:45.268 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:45.278 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:01:45.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:01:45.278 -07 000000448 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:45.278 -07 000000448 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:01:45.278 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 798 ms, distance = 0.839 mm, average velocity = 1.052 mm/sec
17-03-17 20:01:46.228 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:46.228 -07 000000415 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:01:46.238 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:46.238 -07 000000448 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:46.258 -07 000000448 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:46.258 -07 000000448 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:46.258 -07 000000448 INF: Y Motor: Moved to 70.6885 after 1827 ms (table move)
17-03-17 20:01:46.258 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174878 mm (DAC = 38202)
17-03-17 20:01:46.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.258 -07 000000608 INF: FPGA: Recv ZSGSRD 36511
17-03-17 20:01:46.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:46.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.268 -07 000000448 INF: FPGA: Recv ZSGSRD 36519
17-03-17 20:01:46.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.278 -07 000000608 INF: FPGA: Recv ZSGSRD 36510
17-03-17 20:01:46.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.288 -07 000000448 INF: FPGA: Recv ZSGSRD 36510
17-03-17 20:01:46.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36512
17-03-17 20:01:46.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.308 -07 000000415 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:01:46.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36513
17-03-17 20:01:46.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:01:46.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.338 -07 000000608 INF: FPGA: Recv ZSGSRD 36512
17-03-17 20:01:46.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:46.348 -07 000000415 INF: FPGA: Recv ZSGSRD 36515
17-03-17 20:01:46.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.358 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:46.358 -07 000000608 INF: FPGA: Recv ZPIEZORD 32788
17-03-17 20:01:46.368 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.2 V.
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36512 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36505 (-174.0 uncal um), Max = 36519 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36512, posNoise = 7, negNoise = 7
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: After move to -0.174878, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: Settle wait time = 1825 ms, measure time = 104 ms (allowed 150 ms), total time = 1929 ms
17-03-17 20:01:46.368 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:46.418 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2211 ms
17-03-17 20:01:46.418 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:46.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:46.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:46.418 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:46.418 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:46.418 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:46.418 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:46.418 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:01:46.418 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:46.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:46.428 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:46.438 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:01:46.438 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:01:46.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:46.478 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:46.678 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:46.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:46.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:46.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:46.728 -07 000000448 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:01:46.728 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:46.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 283 ms to get response, and 289 ms overall
17-03-17 20:01:46.738 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:46.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:01:46.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:46.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:46.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:46.828 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:46.828 -07 000000608 INF: Autofocus start
17-03-17 20:01:46.828 -07 000000608 INF: MeasureProfile start
17-03-17 20:01:46.828 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:46.838 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:46.838 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:46.838 -07 000000608 INF: MeasureProfile done
17-03-17 20:01:46.838 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:01:46.838 -07 000000608 INF: Autofocus finished
17-03-17 20:01:47.038 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:47.038 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:47.038 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174884185731111. ----------
17-03-17 20:01:47.038 -07 000000610 INF: Cycle	33	Tile	14	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:47.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36717, sync = True, waitForSettling = True)
17-03-17 20:01:47.048 -07 000000610 INF: Z Motor: Moving to -0.168080 mm, started at -0.174884 mm, distance = 6.80 um
17-03-17 20:01:47.048 -07 000000610 INF: FPGA: Xmit ZDACW 36717\n [Z Motor]
17-03-17 20:01:47.048 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:01:47.058 -07 000000610 INF: FPGA: 'ZDACW 36717' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:47.058 -07 000000593 INF: FPGA: Recv ZDACR 36717
17-03-17 20:01:47.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.218 -07 000000459 INF: FPGA: Recv ZSGSRD 35456
17-03-17 20:01:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.228 -07 000000482 INF: FPGA: Recv ZSGSRD 35459
17-03-17 20:01:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.238 -07 000000547 INF: FPGA: Recv ZSGSRD 35459
17-03-17 20:01:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35451
17-03-17 20:01:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35460
17-03-17 20:01:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.268 -07 000000415 INF: FPGA: Recv ZSGSRD 35454
17-03-17 20:01:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35456
17-03-17 20:01:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.288 -07 000000448 INF: FPGA: Recv ZSGSRD 35454
17-03-17 20:01:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35457
17-03-17 20:01:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:47.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35459
17-03-17 20:01:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:47.318 -07 000000459 INF: FPGA: Recv ZPIEZORD 31379
17-03-17 20:01:47.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:47.328 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.0 V.
17-03-17 20:01:47.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35456 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35456 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35451 (-167.2 uncal um), Max = 35460 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:47.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35456, posNoise = 4, negNoise = 5
17-03-17 20:01:47.328 -07 000000610 INF: Z Motor: After move to -0.168080, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:47.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:01:47.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:47.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:47.328 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:47.328 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:47.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:47.328 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:47.328 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:47.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:47.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:47.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:47.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:47.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:47.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:47.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:01:47.338 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:47.338 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:47.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:01:47.348 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:01:47.348 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:01:47.348 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:01:47.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36894 150\n [Camera]
17-03-17 20:01:47.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:47.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:47.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:47.958 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:47.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:47.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:47.968 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:47.968 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:47.968 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:47.968 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:47.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:48.158 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36894 793
17-03-17 20:01:48.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:48.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:01:48.358 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:01:48.358 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:48.368 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:48.368 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:01:48.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:01:48.368 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:01:48.368 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:48.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:48.378 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:01:48.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:48.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:48.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:48.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:48.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:48.508 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:48.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:48.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:01:48.518 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:48.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:01:48.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:48.688 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:48.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36894 150' command took 2 ms to send, 1328 ms to get response, and 1338 ms overall
17-03-17 20:01:48.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:48.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.168100217709411. ------
17-03-17 20:01:48.698 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:48.698 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17484 mm
17-03-17 20:01:48.698 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:48.698 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:01:48.698 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 20:01:48.698 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:48.698 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38194, sync = True, waitForSettling = False)
17-03-17 20:01:48.698 -07 000000459 INF: Z Motor: Moving to -0.174841 mm, started at -0.168100 mm, distance = -6.74 um
17-03-17 20:01:48.708 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:01:48.708 -07 000000459 INF: FPGA: Xmit ZDACW 38194\n [Z Motor]
17-03-17 20:01:48.708 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:01:48.718 -07 000000459 INF: FPGA: 'ZDACW 38194' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:01:48.718 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:48.718 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:01:48.728 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:48.728 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:01:48.728 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:48.728 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:48.728 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:01:48.738 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:48.738 -07 000000551 INF: FPGA: Recv ZDACR 38194
17-03-17 20:01:48.748 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:48.748 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:48.748 -07 000000459 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:01:48.908 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:01:48.908 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:01:48.908 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:48.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:01:48.908 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:01:48.908 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:48.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:48.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:48.908 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:01:48.918 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:01:48.928 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:48.928 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:01:49.118 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:01:49.118 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:01:49.158 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:49.158 -07 000000482 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:01:49.168 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:49.168 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:49.168 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:01:49.168 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.164 mm/sec
17-03-17 20:01:49.308 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.000345,
17-03-17 20:01:50.118 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:50.118 -07 000000593 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:01:50.128 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:50.128 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:50.148 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:50.148 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:01:50.148 -07 000000462 INF: Y Motor: Moved to 71.5195 after 1445 ms (table move)
17-03-17 20:01:50.148 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174841 mm (DAC = 38194)
17-03-17 20:01:50.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.148 -07 000000593 INF: FPGA: Recv ZSGSRD 36507
17-03-17 20:01:50.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:01:50.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36502
17-03-17 20:01:50.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.168 -07 000000593 INF: FPGA: Recv ZSGSRD 36502
17-03-17 20:01:50.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.178 -07 000000482 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:01:50.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.188 -07 000000448 INF: FPGA: Recv ZSGSRD 36516
17-03-17 20:01:50.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.198 -07 000000462 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:01:50.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.208 -07 000000482 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:01:50.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36502
17-03-17 20:01:50.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36500
17-03-17 20:01:50.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:50.238 -07 000000482 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:01:50.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.248 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:50.248 -07 000000448 INF: FPGA: Recv ZPIEZORD 32807
17-03-17 20:01:50.258 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.2 V.
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36516 (-174.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 10, negNoise = 6
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: After move to -0.174841, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:01:50.258 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:50.308 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:01:50.308 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:50.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:50.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:50.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:50.308 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:50.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:50.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:50.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:01:50.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:50.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:01:50.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:50.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:01:50.318 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:01:50.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:50.368 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:50.568 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:50.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:50.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:50.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:50.608 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:50.608 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:50.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:01:50.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:01:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:01:50.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:50.708 -07 000000593 INF: Autofocus start
17-03-17 20:01:50.708 -07 000000593 INF: MeasureProfile start
17-03-17 20:01:50.708 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:50.708 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:50.718 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:50.718 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:50.718 -07 000000593 INF: MeasureProfile done
17-03-17 20:01:50.718 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:01:50.718 -07 000000593 INF: Autofocus finished
17-03-17 20:01:50.918 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:50.918 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:50.918 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.17484564045826. ----------
17-03-17 20:01:50.918 -07 000000610 INF: Cycle	33	Tile	15	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:50.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36691, sync = True, waitForSettling = True)
17-03-17 20:01:50.928 -07 000000610 INF: Z Motor: Moving to -0.167961 mm, started at -0.174846 mm, distance = 6.89 um
17-03-17 20:01:50.928 -07 000000610 INF: FPGA: Xmit ZDACW 36691\n [Z Motor]
17-03-17 20:01:50.928 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:01:50.938 -07 000000610 INF: FPGA: 'ZDACW 36691' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:50.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:50.938 -07 000000608 INF: FPGA: Recv ZDACR 36691
17-03-17 20:01:50.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:50.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.098 -07 000000482 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:01:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.108 -07 000000448 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:01:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.118 -07 000000608 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:01:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.128 -07 000000593 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:01:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.138 -07 000000608 INF: FPGA: Recv ZSGSRD 35439
17-03-17 20:01:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.148 -07 000000593 INF: FPGA: Recv ZSGSRD 35439
17-03-17 20:01:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.158 -07 000000448 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:01:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:01:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.178 -07 000000448 INF: FPGA: Recv ZSGSRD 35431
17-03-17 20:01:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:51.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35437
17-03-17 20:01:51.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:51.198 -07 000000626 INF: FPGA: Recv ZPIEZORD 31359
17-03-17 20:01:51.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:51.208 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.0 V.
17-03-17 20:01:51.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35436 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35439 (-167.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:51.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35436, posNoise = 3, negNoise = 5
17-03-17 20:01:51.208 -07 000000610 INF: Z Motor: After move to -0.167961, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:51.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:01:51.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:51.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:51.208 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:51.208 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:51.208 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:51.208 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:51.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:51.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:51.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:51.208 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:51.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:51.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:51.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:51.218 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:51.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:51.218 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:51.228 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:01:51.228 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:01:51.228 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:01:51.228 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:01:51.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36868 150\n [Camera]
17-03-17 20:01:51.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:51.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:51.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:51.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:51.838 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:51.848 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:51.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:51.848 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:51.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:51.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:01:51.848 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:51.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:01:52.038 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36868 793
17-03-17 20:01:52.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:01:52.228 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:01:52.228 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:01:52.228 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:52.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:01:52.238 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:01:52.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:52.238 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:52.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:52.238 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:01:52.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:01:52.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:52.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:52.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:52.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:52.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:01:52.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:52.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:52.388 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:52.388 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:52.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:01:52.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:01:52.578 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:52.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36868 150' command took 2 ms to send, 1332 ms to get response, and 1342 ms overall
17-03-17 20:01:52.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:52.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167971733466576. ------
17-03-17 20:01:52.578 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:52.578 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17388 mm
17-03-17 20:01:52.578 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:52.588 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:01:52.588 -07 000000448 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:01:52.588 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:52.588 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:52.588 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:01:52.588 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37985, sync = True, waitForSettling = False)
17-03-17 20:01:52.588 -07 000000551 INF: Z Motor: Moving to -0.173884 mm, started at -0.167972 mm, distance = -5.91 um
17-03-17 20:01:52.588 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:01:52.598 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:52.598 -07 000000448 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:52.598 -07 000000448 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:52.598 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:01:52.598 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:52.608 -07 000000551 INF: FPGA: Xmit ZDACW 37985\n [Z Motor]
17-03-17 20:01:52.608 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:01:52.618 -07 000000551 INF: FPGA: 'ZDACW 37985' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:01:52.618 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:52.628 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:52.628 -07 000000626 INF: FPGA: Recv ZDACR 37985
17-03-17 20:01:52.638 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:01:52.638 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:01:52.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:01:52.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:01:52.778 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:52.778 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:52.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:01:52.778 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:01:52.778 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:52.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:52.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:01:52.788 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:01:52.818 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:52.818 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 232 ms overall
17-03-17 20:01:52.978 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:01:52.978 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 379 ms overall
17-03-17 20:01:53.008 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:53.008 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:01:53.018 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:01:53.018 -07 000000448 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:53.018 -07 000000448 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:01:53.018 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.843 mm, average velocity = 2.219 mm/sec
17-03-17 20:01:53.968 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:53.968 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:01:53.978 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:53.978 -07 000000448 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:53.998 -07 000000448 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:53.998 -07 000000448 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:53.998 -07 000000448 INF: Y Motor: Moved to 72.3496 after 1412 ms (table move)
17-03-17 20:01:53.998 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173884 mm (DAC = 37985)
17-03-17 20:01:53.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:53.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36361
17-03-17 20:01:54.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:01:54.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.008 -07 000000431 INF: FPGA: Recv ZSGSRD 36360
17-03-17 20:01:54.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.018 -07 000000448 INF: FPGA: Recv ZSGSRD 36356
17-03-17 20:01:54.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36357
17-03-17 20:01:54.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.038 -07 000000448 INF: FPGA: Recv ZSGSRD 36359
17-03-17 20:01:54.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36360
17-03-17 20:01:54.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:54.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.058 -07 000000448 INF: FPGA: Recv ZSGSRD 36357
17-03-17 20:01:54.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.068 -07 000000480 INF: FPGA: Recv ZSGSRD 36349
17-03-17 20:01:54.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36357
17-03-17 20:01:54.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36358
17-03-17 20:01:54.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.098 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:54.098 -07 000000431 INF: FPGA: Recv ZPIEZORD 32628
17-03-17 20:01:54.108 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.3 V.
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36357 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36358 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36349 (-173.0 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36357, posNoise = 4, negNoise = 8
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: After move to -0.173884, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: Settle wait time = 1414 ms, measure time = 104 ms (allowed 150 ms), total time = 1518 ms
17-03-17 20:01:54.108 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:54.158 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 20:01:54.158 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:54.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:54.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:54.158 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:54.158 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:54.158 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:54.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:54.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:54.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:54.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:54.168 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:54.178 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:01:54.178 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:01:54.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:54.218 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:54.418 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:54.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:54.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:54.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:01:54.458 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:54.458 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:54.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:01:54.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:01:54.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:54.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:54.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:01:54.558 -07 000000431 INF: Autofocus start
17-03-17 20:01:54.558 -07 000000431 INF: MeasureProfile start
17-03-17 20:01:54.558 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:54.558 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:54.568 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:01:54.568 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:54.568 -07 000000431 INF: MeasureProfile done
17-03-17 20:01:54.568 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:01:54.568 -07 000000431 INF: Autofocus finished
17-03-17 20:01:54.668 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.994908,
17-03-17 20:01:54.768 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:54.768 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:54.768 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173888432849138. ----------
17-03-17 20:01:54.768 -07 000000610 INF: Cycle	33	Tile	16	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:54.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-17 20:01:54.778 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.173888 mm, distance = 6.88 um
17-03-17 20:01:54.778 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-17 20:01:54.778 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:01:54.788 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:54.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:54.788 -07 000000480 INF: FPGA: Recv ZDACR 36482
17-03-17 20:01:54.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35293
17-03-17 20:01:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.958 -07 000000480 INF: FPGA: Recv ZSGSRD 35285
17-03-17 20:01:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:01:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35286
17-03-17 20:01:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35288
17-03-17 20:01:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:54.998 -07 000000480 INF: FPGA: Recv ZSGSRD 35289
17-03-17 20:01:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:55.008 -07 000000593 INF: FPGA: Recv ZSGSRD 35280
17-03-17 20:01:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:55.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:01:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:55.028 -07 000000593 INF: FPGA: Recv ZSGSRD 35284
17-03-17 20:01:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:55.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35291
17-03-17 20:01:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:55.048 -07 000000480 INF: FPGA: Recv ZPIEZORD 31212
17-03-17 20:01:55.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:55.058 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.0 V.
17-03-17 20:01:55.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35286 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35286 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35280 (-166.1 uncal um), Max = 35293 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:55.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35286, posNoise = 7, negNoise = 6
17-03-17 20:01:55.058 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:55.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:01:55.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:55.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:55.058 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:55.058 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:55.058 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:55.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:55.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:55.058 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:55.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:55.058 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:55.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:01:55.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:55.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:55.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:55.068 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:01:55.068 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:55.078 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:01:55.078 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:55.078 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:55.078 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:55.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36659 150\n [Camera]
17-03-17 20:01:55.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:55.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:55.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:55.688 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:55.688 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:55.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1128973584, 0x0, 391868352) start.
17-03-17 20:01:55.688 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:55.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:55.688 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:55.688 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:55.688 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 20:01:55.878 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 793
17-03-17 20:01:56.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:01:56.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:01:56.058 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:01:56.058 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:56.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1128973584, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:01:56.068 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:01:56.068 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:56.068 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:01:56.068 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:56.068 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:01:56.068 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:01:56.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:01:56.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:01:56.228 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:56.228 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:56.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 20:01:56.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:01:56.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:01:56.228 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:56.228 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:56.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:01:56.418 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:01:56.418 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:01:56.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36659 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:01:56.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:01:56.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167008101645312. ------
17-03-17 20:01:56.418 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:56.418 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17360 mm
17-03-17 20:01:56.418 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:01:56.428 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:01:56.428 -07 000000012 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:01:56.428 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:56.428 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37923, sync = True, waitForSettling = False)
17-03-17 20:01:56.428 -07 000000448 INF: Z Motor: Moving to -0.173600 mm, started at -0.167008 mm, distance = -6.59 um
17-03-17 20:01:56.548 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:56.548 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:01:56.548 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 20:01:56.548 -07 000000448 INF: FPGA: Xmit ZDACW 37923\n [Z Motor]
17-03-17 20:01:56.548 -07 000000012 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:56.548 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 122 ms to get response, and 123 ms overall
17-03-17 20:01:56.548 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:01:56.548 -07 000000012 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:01:56.548 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:01:56.558 -07 000000448 INF: FPGA: 'ZDACW 37923' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:56.558 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:01:56.568 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:01:56.578 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:56.578 -07 000000415 INF: FPGA: Recv ZDACR 37923
17-03-17 20:01:56.588 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:01:56.588 -07 000000448 INF: Z Motor: MoveAbsStepped took 158 ms (did NOT wait for settling yet))
17-03-17 20:01:56.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:01:56.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:01:56.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:56.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:01:56.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:01:56.628 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:56.628 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:01:56.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:01:56.628 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:01:56.638 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:01:56.738 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:01:56.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:01:56.758 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:01:56.758 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 20:01:56.938 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:01:56.938 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 20:01:56.978 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:56.978 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:01:56.988 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:56.988 -07 000000012 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:56.988 -07 000000012 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:01:56.988 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-17 20:01:57.938 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:01:57.938 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:01:57.948 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:01:57.948 -07 000000012 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:01:57.968 -07 000000012 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:01:57.968 -07 000000012 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:01:57.968 -07 000000012 INF: Y Motor: Moved to 73.1763 after 1541 ms (table move)
17-03-17 20:01:57.968 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173600 mm (DAC = 37923)
17-03-17 20:01:57.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:57.978 -07 000000431 INF: FPGA: Recv ZSGSRD 36319
17-03-17 20:01:57.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 20:01:57.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:57.978 -07 000000431 INF: FPGA: Recv ZSGSRD 36314
17-03-17 20:01:57.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:01:57.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:57.988 -07 000000547 INF: FPGA: Recv ZSGSRD 36307
17-03-17 20:01:57.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:57.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:57.998 -07 000000012 INF: FPGA: Recv ZSGSRD 36311
17-03-17 20:01:58.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.008 -07 000000547 INF: FPGA: Recv ZSGSRD 36316
17-03-17 20:01:58.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.018 -07 000000626 INF: FPGA: Recv ZSGSRD 36322
17-03-17 20:01:58.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.028 -07 000000431 INF: FPGA: Recv ZSGSRD 36309
17-03-17 20:01:58.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.038 -07 000000012 INF: FPGA: Recv ZSGSRD 36307
17-03-17 20:01:58.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.048 -07 000000547 INF: FPGA: Recv ZSGSRD 36310
17-03-17 20:01:58.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36314
17-03-17 20:01:58.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.068 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:58.068 -07 000000626 INF: FPGA: Recv ZPIEZORD 32547
17-03-17 20:01:58.078 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.3 V.
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36313 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36312 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36307 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36313, posNoise = 9, negNoise = 6
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: After move to -0.173600, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 20:01:58.078 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:01:58.128 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 20:01:58.128 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:01:58.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:58.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:58.128 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:58.128 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:58.128 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:01:58.128 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:58.128 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:01:58.128 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:01:58.138 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:58.138 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:01:58.148 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:01:58.148 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:01:58.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:01:58.198 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:01:58.398 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:01:58.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:01:58.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:01:58.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:01:58.438 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:01:58.438 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:01:58.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:01:58.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:01:58.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:01:58.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:01:58.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:01:58.538 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:01:58.538 -07 000000626 INF: Autofocus start
17-03-17 20:01:58.538 -07 000000626 INF: MeasureProfile start
17-03-17 20:01:58.538 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:01:58.548 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:01:58.548 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:01:58.548 -07 000000626 INF: MeasureProfile done
17-03-17 20:01:58.548 -07 000000626 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:01:58.548 -07 000000626 INF: Autofocus finished
17-03-17 20:01:58.748 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:01:58.748 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:01:58.748 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173605767514901. ----------
17-03-17 20:01:58.748 -07 000000610 INF: Cycle	33	Tile	17	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:01:58.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 20:01:58.758 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.173606 mm, distance = 7.05 um
17-03-17 20:01:58.758 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 20:01:58.758 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:01:58.768 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:01:58.768 -07 000000626 INF: FPGA: Recv ZDACR 36385
17-03-17 20:01:58.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:01:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.928 -07 000000547 INF: FPGA: Recv ZSGSRD 35214
17-03-17 20:01:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.938 -07 000000431 INF: FPGA: Recv ZSGSRD 35225
17-03-17 20:01:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.948 -07 000000626 INF: FPGA: Recv ZSGSRD 35219
17-03-17 20:01:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.958 -07 000000012 INF: FPGA: Recv ZSGSRD 35213
17-03-17 20:01:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.968 -07 000000012 INF: FPGA: Recv ZSGSRD 35220
17-03-17 20:01:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35219
17-03-17 20:01:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35217
17-03-17 20:01:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:01:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:58.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35216
17-03-17 20:01:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:59.008 -07 000000486 INF: FPGA: Recv ZSGSRD 35213
17-03-17 20:01:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:01:59.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35219
17-03-17 20:01:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:59.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:01:59.028 -07 000000486 INF: FPGA: Recv ZPIEZORD 31106
17-03-17 20:01:59.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:01:59.038 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.1 V.
17-03-17 20:01:59.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35218 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35213 (-165.7 uncal um), Max = 35225 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:01:59.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35218, posNoise = 7, negNoise = 5
17-03-17 20:01:59.038 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:01:59.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:01:59.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:01:59.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:01:59.038 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:01:59.038 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:01:59.038 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:01:59.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:01:59.038 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:01:59.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:01:59.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:01:59.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:01:59.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:01:59.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:01:59.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:01:59.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:01:59.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:01:59.048 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:01:59.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:01:59.058 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:01:59.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:01:59.058 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:01:59.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36561 150\n [Camera]
17-03-17 20:01:59.258 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:01:59.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:01:59.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:01:59.668 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:01:59.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:01:59.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:01:59.668 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:01:59.678 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:01:59.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:01:59.688 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:01:59.688 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:01:59.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36561 793
17-03-17 20:02:00.008 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:00.028 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.996267,
17-03-17 20:02:00.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:02:00.058 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:02:00.058 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:00.058 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:00.058 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:02:00.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:02:00.058 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:02:00.058 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:00.068 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:00.068 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:02:00.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:00.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:00.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:00.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:00.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:00.208 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:00.218 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:00.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:02:00.218 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:00.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:02:00.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:00.398 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:00.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36561 150' command took 2 ms to send, 1333 ms to get response, and 1338 ms overall
17-03-17 20:02:00.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:02:00.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166571255219672. ------
17-03-17 20:02:00.518 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17308 mm
17-03-17 20:02:00.518 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:00.518 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:00.528 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37809, sync = True, waitForSettling = False)
17-03-17 20:02:00.528 -07 000000626 INF: Z Motor: Moving to -0.173079 mm, started at -0.166571 mm, distance = -6.51 um
17-03-17 20:02:00.528 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:02:00.528 -07 000000486 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:02:00.528 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:00.538 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:00.538 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:00.538 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:02:00.548 -07 000000626 INF: FPGA: Xmit ZDACW 37809\n [Z Motor]
17-03-17 20:02:00.548 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:02:00.548 -07 000000486 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:00.548 -07 000000486 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:00.548 -07 000000486 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:02:00.548 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:02:00.558 -07 000000626 INF: FPGA: 'ZDACW 37809' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:02:00.558 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:00.568 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:00.578 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:00.578 -07 000000415 INF: FPGA: Recv ZDACR 37809
17-03-17 20:02:00.588 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:00.588 -07 000000626 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 20:02:00.608 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:02:00.608 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:02:00.608 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:00.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:02:00.608 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:02:00.608 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:00.608 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:00.608 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:00.608 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:02:00.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:02:00.758 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:00.758 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:02:00.938 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:02:00.938 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:02:00.968 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:00.978 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:02:00.978 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 20:02:00.978 -07 000000486 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:00.978 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:02:00.978 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 20:02:01.738 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:01.928 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:01.928 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:02:01.938 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:01.938 -07 000000486 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:01.948 -07 000000486 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:01.948 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:01.948 -07 000000486 INF: Y Motor: Moved to 74.0083 after 1422 ms (table move)
17-03-17 20:02:01.958 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173079 mm (DAC = 37809)
17-03-17 20:02:01.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:01.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36231
17-03-17 20:02:01.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:01.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:01.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:02:01.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:01.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:01.978 -07 000000012 INF: FPGA: Recv ZSGSRD 36230
17-03-17 20:02:01.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:01.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:01.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36241
17-03-17 20:02:01.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:01.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:01.998 -07 000000608 INF: FPGA: Recv ZSGSRD 36232
17-03-17 20:02:02.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.008 -07 000000486 INF: FPGA: Recv ZSGSRD 36234
17-03-17 20:02:02.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.018 -07 000000486 INF: FPGA: Recv ZSGSRD 36237
17-03-17 20:02:02.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.028 -07 000000608 INF: FPGA: Recv ZSGSRD 36226
17-03-17 20:02:02.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.038 -07 000000012 INF: FPGA: Recv ZSGSRD 36227
17-03-17 20:02:02.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:02:02.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.058 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:02.058 -07 000000608 INF: FPGA: Recv ZPIEZORD 32451
17-03-17 20:02:02.068 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.4 V.
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36231 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36226 (-172.2 uncal um), Max = 36241 (-172.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36231, posNoise = 10, negNoise = 5
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: After move to -0.173079, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: Settle wait time = 1428 ms, measure time = 110 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:02:02.068 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:02.108 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:02:02.108 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:02.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:02.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:02.108 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:02.108 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:02.108 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:02.108 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:02.108 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:02.108 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:02.118 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:02.118 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:02.128 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:02.128 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:02:02.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:02.178 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:02:02.378 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 20:02:02.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 20:02:02.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:02.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:02:02.418 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:02.418 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:02.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:02:02.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:02:02.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:02.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:02.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:02:02.518 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:02.518 -07 000000501 INF: Autofocus start
17-03-17 20:02:02.518 -07 000000501 INF: MeasureProfile start
17-03-17 20:02:02.518 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:02.528 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:02:02.528 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:02.528 -07 000000501 INF: MeasureProfile done
17-03-17 20:02:02.528 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:02:02.528 -07 000000501 INF: Autofocus finished
17-03-17 20:02:02.728 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:02.728 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 20:02:02.738 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173078982119276. ----------
17-03-17 20:02:02.738 -07 000000610 INF: Cycle	33	Tile	18	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:02.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36324, sync = True, waitForSettling = True)
17-03-17 20:02:02.738 -07 000000610 INF: Z Motor: Moving to -0.166281 mm, started at -0.173079 mm, distance = 6.80 um
17-03-17 20:02:02.738 -07 000000610 INF: FPGA: Xmit ZDACW 36324\n [Z Motor]
17-03-17 20:02:02.738 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:02:02.748 -07 000000610 INF: FPGA: 'ZDACW 36324' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:02.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:02.748 -07 000000501 INF: FPGA: Recv ZDACR 36324
17-03-17 20:02:02.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:02.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35173
17-03-17 20:02:02.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35176
17-03-17 20:02:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.928 -07 000000480 INF: FPGA: Recv ZSGSRD 35170
17-03-17 20:02:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.938 -07 000000012 INF: FPGA: Recv ZSGSRD 35174
17-03-17 20:02:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35178
17-03-17 20:02:02.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.958 -07 000000501 INF: FPGA: Recv ZSGSRD 35174
17-03-17 20:02:02.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35173
17-03-17 20:02:02.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.978 -07 000000012 INF: FPGA: Recv ZSGSRD 35170
17-03-17 20:02:02.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35172
17-03-17 20:02:02.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:02.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:02.998 -07 000000480 INF: FPGA: Recv ZSGSRD 35175
17-03-17 20:02:03.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:03.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:03.008 -07 000000608 INF: FPGA: Recv ZPIEZORD 31058
17-03-17 20:02:03.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:03.018 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.1 V.
17-03-17 20:02:03.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35174 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35174 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35170 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:02:03.018 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35174, posNoise = 4, negNoise = 4
17-03-17 20:02:03.018 -07 000000610 INF: Z Motor: After move to -0.166281, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:03.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:02:03.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:03.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:03.018 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:03.018 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:03.018 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:03.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:03.018 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:03.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:03.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:02:03.018 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:03.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:03.018 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:03.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:03.028 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:03.028 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:03.028 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:03.038 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:02:03.038 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:03.038 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:03.038 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:02:03.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36501 150\n [Camera]
17-03-17 20:02:03.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:03.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:03.648 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:03.648 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:03.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:03.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:03.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:03.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:03.648 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:03.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:03.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36501 793
17-03-17 20:02:03.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:04.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:02:04.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:02:04.028 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:04.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:02:04.028 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:02:04.028 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:04.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:04.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:02:04.038 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:04.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:02:04.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:04.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:04.188 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:04.188 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:04.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:04.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:04.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:04.188 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:04.188 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:04.188 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 20:02:04.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:02:04.378 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:04.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36501 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-17 20:02:04.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:02:04.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166288589885435. ------
17-03-17 20:02:04.378 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:04.388 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17264 mm
17-03-17 20:02:04.388 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:04.388 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:04.388 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37714, sync = True, waitForSettling = False)
17-03-17 20:02:04.388 -07 000000480 INF: Z Motor: Moving to -0.172644 mm, started at -0.166289 mm, distance = -6.36 um
17-03-17 20:02:04.388 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:02:04.388 -07 000000593 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:02:04.398 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:04.398 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:04.398 -07 000000012 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:02:04.408 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:02:04.408 -07 000000593 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:04.408 -07 000000593 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:04.408 -07 000000593 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:02:04.408 -07 000000480 INF: FPGA: Xmit ZDACW 37714\n [Z Motor]
17-03-17 20:02:04.408 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:02:04.418 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:04.418 -07 000000480 INF: FPGA: 'ZDACW 37714' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:02:04.428 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:04.438 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:04.438 -07 000000626 INF: FPGA: Recv ZDACR 37714
17-03-17 20:02:04.448 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:04.448 -07 000000480 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 20:02:04.588 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:02:04.588 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:02:04.588 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:04.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:02:04.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:02:04.588 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:04.588 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:02:04.598 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:02:04.598 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:02:04.598 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:02:04.618 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:04.618 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:02:04.808 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:02:04.808 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-17 20:02:04.828 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:04.828 -07 000000448 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:02:04.838 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:04.838 -07 000000593 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:04.838 -07 000000593 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:02:04.838 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.106 mm/sec
17-03-17 20:02:05.388 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.994908,
17-03-17 20:02:05.788 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:05.788 -07 000000462 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:02:05.798 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:05.798 -07 000000593 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:05.808 -07 000000593 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:05.808 -07 000000593 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:02:05.808 -07 000000593 INF: Y Motor: Moved to 74.8325 after 1421 ms (table move)
17-03-17 20:02:05.808 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172644 mm (DAC = 37714)
17-03-17 20:02:05.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.818 -07 000000593 INF: FPGA: Recv ZSGSRD 36175
17-03-17 20:02:05.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 20:02:05.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.818 -07 000000462 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:02:05.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:05.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.828 -07 000000626 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:02:05.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.838 -07 000000593 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:02:05.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.848 -07 000000593 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:02:05.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.858 -07 000000593 INF: FPGA: Recv ZSGSRD 36161
17-03-17 20:02:05.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.868 -07 000000626 INF: FPGA: Recv ZSGSRD 36158
17-03-17 20:02:05.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.878 -07 000000593 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:02:05.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:02:05.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:05.898 -07 000000593 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:02:05.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.908 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:05.908 -07 000000626 INF: FPGA: Recv ZPIEZORD 32383
17-03-17 20:02:05.918 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.755 V. Piezo Error = -8.4 V.
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36165 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36158 (-171.7 uncal um), Max = 36175 (-171.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36165, posNoise = 10, negNoise = 7
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: After move to -0.172644, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: Settle wait time = 1425 ms, measure time = 101 ms (allowed 150 ms), total time = 1526 ms
17-03-17 20:02:05.918 -07 000000501 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:05.968 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:02:05.968 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:05.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:05.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:05.968 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:05.968 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:05.968 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:05.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:05.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:02:05.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:05.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:05.978 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:05.978 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:05.978 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:02:05.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:06.028 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:02:06.228 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:02:06.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:02:06.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:06.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:02:06.268 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:06.268 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:06.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:02:06.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:02:06.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:06.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:06.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:02:06.468 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:06.468 -07 000000626 INF: Autofocus start
17-03-17 20:02:06.468 -07 000000626 INF: MeasureProfile start
17-03-17 20:02:06.468 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:06.478 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:06.478 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:06.478 -07 000000626 INF: MeasureProfile done
17-03-17 20:02:06.488 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:02:06.488 -07 000000626 INF: Autofocus finished
17-03-17 20:02:06.678 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:06.678 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:02:06.678 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.17265498411792. ----------
17-03-17 20:02:06.678 -07 000000610 INF: Cycle	33	Tile	19	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:06.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36229, sync = True, waitForSettling = True)
17-03-17 20:02:06.688 -07 000000610 INF: Z Motor: Moving to -0.165846 mm, started at -0.172655 mm, distance = 6.81 um
17-03-17 20:02:06.688 -07 000000610 INF: FPGA: Xmit ZDACW 36229\n [Z Motor]
17-03-17 20:02:06.688 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:02:06.698 -07 000000610 INF: FPGA: 'ZDACW 36229' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:06.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:06.698 -07 000000593 INF: FPGA: Recv ZDACR 36229
17-03-17 20:02:06.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:06.738 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:06.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.858 -07 000000626 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:02:06.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.868 -07 000000593 INF: FPGA: Recv ZSGSRD 35107
17-03-17 20:02:06.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.878 -07 000000626 INF: FPGA: Recv ZSGSRD 35102
17-03-17 20:02:06.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.888 -07 000000626 INF: FPGA: Recv ZSGSRD 35098
17-03-17 20:02:06.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35114
17-03-17 20:02:06.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35107
17-03-17 20:02:06.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35105
17-03-17 20:02:06.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.928 -07 000000551 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:02:06.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.938 -07 000000593 INF: FPGA: Recv ZSGSRD 35100
17-03-17 20:02:06.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:06.948 -07 000000501 INF: FPGA: Recv ZSGSRD 35112
17-03-17 20:02:06.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:06.958 -07 000000626 INF: FPGA: Recv ZPIEZORD 30972
17-03-17 20:02:06.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:06.968 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.528 V. Piezo Error = -9.1 V.
17-03-17 20:02:06.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35106 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35107 (-165.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35098 (-164.9 uncal um), Max = 35114 (-165.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:02:06.968 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35106, posNoise = 8, negNoise = 8
17-03-17 20:02:06.968 -07 000000610 INF: Z Motor: After move to -0.165846, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:06.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:02:06.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:06.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:06.968 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:06.968 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:06.968 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:06.968 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:06.968 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:06.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:06.968 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:02:06.968 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:06.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:06.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:06.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:06.978 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:06.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:06.978 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:06.988 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:02:06.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:06.988 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:06.988 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:02:06.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 36406 150\n [Camera]
17-03-17 20:02:07.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:07.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:07.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:07.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:07.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:07.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:02:07.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:07.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:07.598 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:07.598 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:07.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:02:07.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36406 793
17-03-17 20:02:07.938 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:07.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:02:07.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:02:07.978 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:07.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:02:07.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:02:07.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:07.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:07.978 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:07.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:02:07.988 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:02:08.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:08.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:08.138 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:08.138 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:08.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:02:08.138 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:08.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:08.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:08.138 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:08.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:02:08.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:08.328 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:08.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 36406 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 20:02:08.518 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:02:08.518 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:02:08.518 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:08.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:02:08.518 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:02:08.518 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:08.528 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:08.528 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:02:08.528 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:02:08.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:02:08.538 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:02:08.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:02:08.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:02:08.618 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:02:08.618 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:02:08.618 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:02:08.618 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 20:02:08.628 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:02:08.628 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:02:09.128 -07 000000431 INF: FPGA: Recv EMIN
17-03-17 20:02:09.128 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:02:09.128 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:02:09.128 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 20:02:09.138 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:09.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:09.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165851743459795. ------
17-03-17 20:02:09.258 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:09.258 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14036 mm
17-03-17 20:02:09.258 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:09.268 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:02:09.268 -07 000000482 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:02:09.268 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:09.268 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:09.268 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:02:09.268 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30662, sync = True, waitForSettling = False)
17-03-17 20:02:09.268 -07 000000431 INF: Z Motor: Moving to -0.140362 mm, started at -0.165852 mm, distance = 25.49 um
17-03-17 20:02:09.268 -07 000000547 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:02:09.278 -07 000000431 INF: FPGA: Xmit ZDACW 30662\n [Z Motor]
17-03-17 20:02:09.278 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:09.278 -07 000000482 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:09.278 -07 000000482 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:02:09.278 -07 000000482 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:02:09.278 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:02:09.288 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:09.288 -07 000000431 INF: FPGA: 'ZDACW 30662' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:02:09.298 -07 000000482 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:02:09.308 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:09.308 -07 000000501 INF: FPGA: Recv ZDACR 30662
17-03-17 20:02:09.318 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:09.318 -07 000000431 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:02:09.488 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:09.488 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:02:10.748 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.990831,
17-03-17 20:02:10.918 -07 000000626 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:02:10.918 -07 000000482 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 20:02:10.918 -07 000000482 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:02:10.918 -07 000000482 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:02:10.918 -07 000000482 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 20:02:11.738 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:13.768 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:13.768 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:02:13.778 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:13.778 -07 000000482 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:13.798 -07 000000482 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:13.798 -07 000000482 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:02:13.798 -07 000000482 INF: Y Motor: Moved to 59.9111 after 4538 ms
17-03-17 20:02:13.808 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140362 mm (DAC = 30662)
17-03-17 20:02:13.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.808 -07 000000626 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:02:13.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:13.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.818 -07 000000551 INF: FPGA: Recv ZSGSRD 31142
17-03-17 20:02:13.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.828 -07 000000551 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:02:13.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.838 -07 000000626 INF: FPGA: Recv ZSGSRD 31135
17-03-17 20:02:13.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.848 -07 000000448 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:02:13.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.858 -07 000000551 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:02:13.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.868 -07 000000626 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:02:13.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.878 -07 000000551 INF: FPGA: Recv ZSGSRD 31139
17-03-17 20:02:13.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.888 -07 000000551 INF: FPGA: Recv ZSGSRD 31146
17-03-17 20:02:13.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:13.898 -07 000000593 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:02:13.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.908 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:13.908 -07 000000626 INF: FPGA: Recv ZPIEZORD 26840
17-03-17 20:02:13.918 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.4 V.
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31141 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31142 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31135 (-139.5 uncal um), Max = 31146 (-139.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31141, posNoise = 5, negNoise = 6
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: After move to -0.140362, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: Settle wait time = 4542 ms, measure time = 106 ms (allowed 150 ms), total time = 4648 ms
17-03-17 20:02:13.918 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:13.968 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4701 ms
17-03-17 20:02:13.968 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:13.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:13.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:13.968 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:13.968 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:13.968 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:13.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:13.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:13.968 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:02:13.998 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 20:02:13.998 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:13.998 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:13.998 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:13.998 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:13.998 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 20:02:14.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:14.048 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:14.248 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:14.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:14.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:14.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:02:14.288 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:14.288 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:14.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:02:14.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:02:14.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:14.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:14.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:02:14.388 -07 000000593 INF: Image SNR check: start
17-03-17 20:02:14.388 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:14.388 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:14.398 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:14.398 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:14.408 -07 000000593 INF: Image SNR check: pass  [peak (Max-Min)=62.03]
17-03-17 20:02:14.408 -07 000000593 INF: Autofocus start
17-03-17 20:02:14.408 -07 000000593 INF: MeasureProfile start
17-03-17 20:02:14.418 -07 000000593 INF: MeasureProfile done
17-03-17 20:02:14.418 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:02:14.418 -07 000000593 INF: Autofocus finished
17-03-17 20:02:14.598 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:14.598 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:14.598 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140379742317713. ----------
17-03-17 20:02:14.598 -07 000000610 INF: Cycle	33	Tile	1	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:14.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29169, sync = True, waitForSettling = True)
17-03-17 20:02:14.608 -07 000000610 INF: Z Motor: Moving to -0.133527 mm, started at -0.140380 mm, distance = 6.85 um
17-03-17 20:02:14.608 -07 000000610 INF: FPGA: Xmit ZDACW 29169\n [Z Motor]
17-03-17 20:02:14.608 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:02:14.618 -07 000000610 INF: FPGA: 'ZDACW 29169' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:14.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:14.618 -07 000000593 INF: FPGA: Recv ZDACR 29169
17-03-17 20:02:14.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:14.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.778 -07 000000551 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:02:14.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.788 -07 000000482 INF: FPGA: Recv ZSGSRD 30072
17-03-17 20:02:14.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30073
17-03-17 20:02:14.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.808 -07 000000482 INF: FPGA: Recv ZSGSRD 30078
17-03-17 20:02:14.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.818 -07 000000448 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:02:14.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.828 -07 000000462 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:02:14.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.838 -07 000000448 INF: FPGA: Recv ZSGSRD 30070
17-03-17 20:02:14.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.848 -07 000000482 INF: FPGA: Recv ZSGSRD 30075
17-03-17 20:02:14.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30074
17-03-17 20:02:14.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:14.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30076
17-03-17 20:02:14.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:14.878 -07 000000448 INF: FPGA: Recv ZPIEZORD 25690
17-03-17 20:02:14.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:14.888 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -9.6 V.
17-03-17 20:02:14.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30073 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30074 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30065 (-132.7 uncal um), Max = 30079 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:02:14.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30073, posNoise = 6, negNoise = 8
17-03-17 20:02:14.888 -07 000000610 INF: Z Motor: After move to -0.133527, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:14.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:02:14.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:14.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:14.888 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:14.888 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:14.888 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:14.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:14.888 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:14.888 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:14.888 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:14.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:14.888 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:02:14.888 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:02:14.898 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:14.898 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:14.908 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:02:14.908 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:02:14.918 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:02:14.918 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:14.918 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:02:14.918 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:14.928 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:14.928 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 20:02:14.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 29346 150\n [Camera]
17-03-17 20:02:15.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:15.538 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:15.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:15.538 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:15.538 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:15.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:15.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:15.548 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:15.548 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:02:15.548 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:15.548 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:02:15.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29346 793
17-03-17 20:02:15.878 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:02:15.948 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:02:15.948 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:02:15.948 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:15.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:02:15.948 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:02:15.948 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:15.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:15.948 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:02:15.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:15.958 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:02:16.078 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:16.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:16.078 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:16.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:16.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:16.188 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:16.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:16.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:16.188 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:16.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:16.198 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.964938,
17-03-17 20:02:16.268 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:02:16.268 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:16.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 29346 150' command took 2 ms to send, 1334 ms to get response, and 1341 ms overall
17-03-17 20:02:16.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:16.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133518683750312. ------
17-03-17 20:02:16.268 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:16.268 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14001 mm
17-03-17 20:02:16.268 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:16.278 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:02:16.278 -07 000000482 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:02:16.278 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:16.278 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30586, sync = True, waitForSettling = False)
17-03-17 20:02:16.278 -07 000000480 INF: Z Motor: Moving to -0.140014 mm, started at -0.133519 mm, distance = -6.50 um
17-03-17 20:02:16.278 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:16.278 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:02:16.278 -07 000000462 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:02:16.288 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:16.288 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:16.288 -07 000000482 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:16.288 -07 000000482 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:16.288 -07 000000482 INF: Y Motor: Moving 1330 steps2
17-03-17 20:02:16.298 -07 000000480 INF: FPGA: Xmit ZDACW 30586\n [Z Motor]
17-03-17 20:02:16.298 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:02:16.308 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:16.308 -07 000000480 INF: FPGA: 'ZDACW 30586' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:02:16.318 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:16.318 -07 000000478 INF: FPGA: Recv ZDACR 30586
17-03-17 20:02:16.328 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:02:16.328 -07 000000480 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:02:16.488 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:16.488 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 20:02:16.598 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:02:16.598 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:02:16.598 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:16.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:02:16.598 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:02:16.598 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:16.598 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:16.598 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:02:16.598 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:16.608 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:02:16.678 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 20:02:16.678 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:02:16.708 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:16.718 -07 000000593 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:02:16.718 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:16.718 -07 000000482 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:16.718 -07 000000482 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:02:16.718 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.831 mm, average velocity = 2.105 mm/sec
17-03-17 20:02:16.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:17.668 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:17.668 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:02:17.678 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:17.678 -07 000000482 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:17.698 -07 000000482 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:17.698 -07 000000482 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:17.698 -07 000000482 INF: Y Motor: Moved to 60.7329 after 1421 ms (table move)
17-03-17 20:02:17.698 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140014 mm (DAC = 30586)
17-03-17 20:02:17.698 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.698 -07 000000482 INF: FPGA: Recv ZSGSRD 31088
17-03-17 20:02:17.708 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:17.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.708 -07 000000482 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:02:17.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.718 -07 000000478 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:02:17.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.728 -07 000000593 INF: FPGA: Recv ZSGSRD 31096
17-03-17 20:02:17.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.738 -07 000000593 INF: FPGA: Recv ZSGSRD 31089
17-03-17 20:02:17.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.748 -07 000000478 INF: FPGA: Recv ZSGSRD 31098
17-03-17 20:02:17.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.758 -07 000000482 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:02:17.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.768 -07 000000551 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:02:17.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.778 -07 000000626 INF: FPGA: Recv ZSGSRD 31080
17-03-17 20:02:17.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:17.788 -07 000000482 INF: FPGA: Recv ZSGSRD 31086
17-03-17 20:02:17.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.798 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:17.798 -07 000000551 INF: FPGA: Recv ZPIEZORD 27040
17-03-17 20:02:17.808 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.9 V.
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31087 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31085 (-139.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 31079 (-139.2 uncal um), Max = 31098 (-139.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31087, posNoise = 11, negNoise = 8
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: After move to -0.140014, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: Settle wait time = 1424 ms, measure time = 104 ms (allowed 150 ms), total time = 1528 ms
17-03-17 20:02:17.808 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:17.858 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:02:17.858 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:17.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:17.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:17.858 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:17.858 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:17.858 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:17.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:17.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:17.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:17.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:02:17.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:17.878 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:17.878 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:02:17.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:17.928 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:18.128 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:18.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:18.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:18.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:02:18.168 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:18.168 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:18.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 20:02:18.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:02:18.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:18.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:18.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:02:18.268 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:18.268 -07 000000482 INF: Autofocus start
17-03-17 20:02:18.268 -07 000000482 INF: MeasureProfile start
17-03-17 20:02:18.268 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:18.278 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:18.278 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:18.278 -07 000000482 INF: MeasureProfile done
17-03-17 20:02:18.278 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:02:18.278 -07 000000482 INF: Autofocus finished
17-03-17 20:02:18.478 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:18.478 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 20:02:18.488 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140032834862058. ----------
17-03-17 20:02:18.488 -07 000000610 INF: Cycle	33	Tile	2	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:18.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29093, sync = True, waitForSettling = True)
17-03-17 20:02:18.488 -07 000000610 INF: Z Motor: Moving to -0.133179 mm, started at -0.140033 mm, distance = 6.85 um
17-03-17 20:02:18.488 -07 000000610 INF: FPGA: Xmit ZDACW 29093\n [Z Motor]
17-03-17 20:02:18.488 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:02:18.498 -07 000000610 INF: FPGA: 'ZDACW 29093' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:18.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:18.498 -07 000000482 INF: FPGA: Recv ZDACR 29093
17-03-17 20:02:18.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.658 -07 000000626 INF: FPGA: Recv ZSGSRD 30022
17-03-17 20:02:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.668 -07 000000448 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:02:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30020
17-03-17 20:02:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.688 -07 000000478 INF: FPGA: Recv ZSGSRD 30024
17-03-17 20:02:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.698 -07 000000593 INF: FPGA: Recv ZSGSRD 30018
17-03-17 20:02:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.708 -07 000000482 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:02:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.718 -07 000000626 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:02:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:02:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.738 -07 000000593 INF: FPGA: Recv ZSGSRD 30022
17-03-17 20:02:18.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:18.748 -07 000000448 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:02:18.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:18.758 -07 000000626 INF: FPGA: Recv ZPIEZORD 25650
17-03-17 20:02:18.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:18.768 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.6 V.
17-03-17 20:02:18.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30022 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30015 (-132.4 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:18.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30022, posNoise = 5, negNoise = 7
17-03-17 20:02:18.768 -07 000000610 INF: Z Motor: After move to -0.133179, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:18.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:02:18.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:18.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:18.768 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:18.768 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:18.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:18.768 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:18.768 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:18.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:18.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:02:18.768 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:18.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:02:18.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:18.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:18.778 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:18.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:18.778 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:18.788 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:02:18.788 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:02:18.788 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:02:18.788 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:02:18.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 29270 150\n [Camera]
17-03-17 20:02:18.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:19.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:19.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:19.398 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:19.398 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:19.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:19.408 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:19.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:19.408 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:19.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:19.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:19.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29270 793
17-03-17 20:02:19.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:19.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:02:19.808 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:02:19.808 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:19.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:02:19.808 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:02:19.808 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:19.808 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:19.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:02:19.808 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:19.818 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:02:19.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:19.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:19.938 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:19.938 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:19.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:02:19.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:19.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:19.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:19.948 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:19.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:02:20.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:20.138 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:20.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 29270 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-17 20:02:20.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:20.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133191048931082. ------
17-03-17 20:02:20.138 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13995 mm
17-03-17 20:02:20.138 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:20.138 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:20.148 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:02:20.148 -07 000000547 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:02:20.148 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:20.148 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:20.148 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:02:20.148 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30571, sync = True, waitForSettling = False)
17-03-17 20:02:20.148 -07 000000501 INF: Z Motor: Moving to -0.139945 mm, started at -0.133191 mm, distance = -6.75 um
17-03-17 20:02:20.148 -07 000000459 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:02:20.158 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:20.158 -07 000000547 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:20.158 -07 000000501 INF: FPGA: Xmit ZDACW 30571\n [Z Motor]
17-03-17 20:02:20.158 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:02:20.158 -07 000000547 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:20.158 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:02:20.168 -07 000000501 INF: FPGA: 'ZDACW 30571' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:02:20.168 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:20.178 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:20.188 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:20.188 -07 000000626 INF: FPGA: Recv ZDACR 30571
17-03-17 20:02:20.198 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:20.198 -07 000000501 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:02:20.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:02:20.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:02:20.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:20.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:02:20.338 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:02:20.338 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:20.338 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:20.348 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:02:20.348 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:02:20.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:02:20.368 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:20.368 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 20:02:20.548 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:02:20.548 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 20:02:20.588 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:20.588 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:02:20.598 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:20.598 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:20.598 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:02:20.598 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 20:02:21.548 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:21.548 -07 000000482 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:02:21.558 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.558 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:21.568 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.978563,
17-03-17 20:02:21.578 -07 000000547 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:21.578 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:21.578 -07 000000547 INF: Y Motor: Moved to 61.5640 after 1435 ms (table move)
17-03-17 20:02:21.578 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139945 mm (DAC = 30571)
17-03-17 20:02:21.598 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.598 -07 000000448 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:02:21.608 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:02:21.608 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.608 -07 000000431 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:02:21.618 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.628 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.628 -07 000000462 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:02:21.638 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:02:21.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.638 -07 000000431 INF: FPGA: Recv ZSGSRD 31072
17-03-17 20:02:21.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.648 -07 000000462 INF: FPGA: Recv ZSGSRD 31085
17-03-17 20:02:21.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.658 -07 000000501 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:02:21.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.668 -07 000000501 INF: FPGA: Recv ZSGSRD 31074
17-03-17 20:02:21.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.678 -07 000000462 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:02:21.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.688 -07 000000448 INF: FPGA: Recv ZSGSRD 31080
17-03-17 20:02:21.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:21.698 -07 000000462 INF: FPGA: Recv ZSGSRD 31081
17-03-17 20:02:21.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.708 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:21.708 -07 000000431 INF: FPGA: Recv ZPIEZORD 27057
17-03-17 20:02:21.718 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.665 V. Piezo Error = -8.8 V.
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31078 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31078 (-139.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31071 (-139.1 uncal um), Max = 31085 (-139.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31078, posNoise = 7, negNoise = 7
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: After move to -0.139945, error = -0.000030, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: Settle wait time = 1434 ms, measure time = 133 ms (allowed 150 ms), total time = 1567 ms
17-03-17 20:02:21.718 -07 000000551 INF: Z Motor: Waiting extra 17 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:21.738 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:02:21.738 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:21.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:21.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:21.738 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:21.738 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:21.738 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:21.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:21.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:21.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:21.748 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:21.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:02:21.748 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:21.758 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:21.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:02:21.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:21.808 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:22.008 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:22.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:22.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:22.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 20:02:22.048 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:22.048 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:22.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:02:22.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:02:22.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:22.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:22.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:02:22.148 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:22.148 -07 000000431 INF: Autofocus start
17-03-17 20:02:22.148 -07 000000431 INF: MeasureProfile start
17-03-17 20:02:22.148 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:22.158 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:22.158 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:22.168 -07 000000431 INF: MeasureProfile done
17-03-17 20:02:22.168 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:02:22.168 -07 000000431 INF: Autofocus finished
17-03-17 20:02:22.358 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:22.358 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:22.358 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139975016952782. ----------
17-03-17 20:02:22.358 -07 000000610 INF: Cycle	33	Tile	3	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:22.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29096, sync = True, waitForSettling = True)
17-03-17 20:02:22.368 -07 000000610 INF: Z Motor: Moving to -0.133193 mm, started at -0.139975 mm, distance = 6.78 um
17-03-17 20:02:22.368 -07 000000610 INF: FPGA: Xmit ZDACW 29096\n [Z Motor]
17-03-17 20:02:22.368 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:02:22.378 -07 000000610 INF: FPGA: 'ZDACW 29096' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:22.378 -07 000000012 INF: FPGA: Recv ZDACR 29096
17-03-17 20:02:22.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30030
17-03-17 20:02:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:02:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.558 -07 000000501 INF: FPGA: Recv ZSGSRD 30020
17-03-17 20:02:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:02:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.578 -07 000000448 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:02:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.588 -07 000000551 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:02:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.598 -07 000000501 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:02:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:02:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.618 -07 000000448 INF: FPGA: Recv ZSGSRD 30022
17-03-17 20:02:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:22.628 -07 000000431 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:02:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:22.638 -07 000000448 INF: FPGA: Recv ZPIEZORD 25693
17-03-17 20:02:22.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:22.648 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.5 V.
17-03-17 20:02:22.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30024 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30025 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30017 (-132.4 uncal um), Max = 30030 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:22.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30024, posNoise = 6, negNoise = 7
17-03-17 20:02:22.648 -07 000000610 INF: Z Motor: After move to -0.133193, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:22.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:02:22.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:22.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:22.648 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:22.648 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:22.648 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:22.648 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:22.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:22.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:22.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:22.648 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:22.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:02:22.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:22.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:02:22.658 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:22.658 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:22.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:22.658 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:02:22.668 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:02:22.668 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:02:22.668 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:02:22.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 29272 150\n [Camera]
17-03-17 20:02:22.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:23.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:23.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:23.278 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:23.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:23.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:02:23.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:23.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:23.278 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:23.278 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:23.278 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:02:23.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29272 793
17-03-17 20:02:23.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:23.658 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:02:23.658 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:02:23.658 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:23.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:02:23.658 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:02:23.658 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:23.658 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:23.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:23.658 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:02:23.668 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:02:23.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:23.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:23.818 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:23.818 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:23.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:23.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:23.818 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:02:23.818 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:23.818 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:23.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:02:24.008 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:02:24.008 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:24.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 29272 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 20:02:24.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:24.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133203897355366. ------
17-03-17 20:02:24.008 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:24.008 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13929 mm
17-03-17 20:02:24.008 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:24.008 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:24.018 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:24.018 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:24.018 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30428, sync = True, waitForSettling = False)
17-03-17 20:02:24.018 -07 000000448 INF: Z Motor: Moving to -0.139290 mm, started at -0.133204 mm, distance = -6.09 um
17-03-17 20:02:24.018 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:02:24.018 -07 000000486 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:02:24.028 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:24.028 -07 000000480 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:02:24.038 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:02:24.038 -07 000000486 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:24.038 -07 000000486 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:24.038 -07 000000486 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:02:24.038 -07 000000448 INF: FPGA: Xmit ZDACW 30428\n [Z Motor]
17-03-17 20:02:24.038 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:02:24.048 -07 000000448 INF: FPGA: 'ZDACW 30428' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:24.048 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:24.058 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:24.058 -07 000000459 INF: FPGA: Recv ZDACR 30428
17-03-17 20:02:24.068 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:02:24.068 -07 000000448 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:02:24.218 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:24.218 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:24.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:02:24.218 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:02:24.218 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:24.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:02:24.218 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:02:24.218 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:24.228 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:24.228 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:02:24.228 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:02:24.228 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:02:24.418 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:02:24.418 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:02:24.458 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:24.458 -07 000000551 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:02:24.468 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:24.468 -07 000000486 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:24.468 -07 000000486 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:02:24.468 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-17 20:02:25.418 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:25.418 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:02:25.428 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:25.428 -07 000000486 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:25.448 -07 000000486 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:25.448 -07 000000486 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:25.448 -07 000000486 INF: Y Motor: Moved to 62.3955 after 1430 ms (table move)
17-03-17 20:02:25.448 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139290 mm (DAC = 30428)
17-03-17 20:02:25.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.448 -07 000000551 INF: FPGA: Recv ZSGSRD 30974
17-03-17 20:02:25.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:25.458 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30977
17-03-17 20:02:25.468 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.468 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.468 -07 000000626 INF: FPGA: Recv ZSGSRD 30976
17-03-17 20:02:25.478 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.478 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30979
17-03-17 20:02:25.488 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.488 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.488 -07 000000480 INF: FPGA: Recv ZSGSRD 30971
17-03-17 20:02:25.498 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.498 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.498 -07 000000480 INF: FPGA: Recv ZSGSRD 30966
17-03-17 20:02:25.508 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.508 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.508 -07 000000012 INF: FPGA: Recv ZSGSRD 30967
17-03-17 20:02:25.518 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.518 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.518 -07 000000626 INF: FPGA: Recv ZSGSRD 30965
17-03-17 20:02:25.528 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.528 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30975
17-03-17 20:02:25.538 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:25.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30974
17-03-17 20:02:25.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.548 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:25.548 -07 000000448 INF: FPGA: Recv ZPIEZORD 26950
17-03-17 20:02:25.558 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.9 V.
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30972 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30965 (-138.4 uncal um), Max = 30979 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30972, posNoise = 7, negNoise = 7
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: After move to -0.139290, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:02:25.558 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:25.608 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:02:25.608 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:25.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:25.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:25.608 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:25.608 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:25.608 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:25.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:25.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:25.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:25.618 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:25.618 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:25.628 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:25.628 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:02:25.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:25.678 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:25.878 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:25.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:25.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:25.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 20:02:25.918 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:25.918 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:25.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 20:02:25.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:02:25.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:25.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:25.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:02:26.018 -07 000000012 INF: Autofocus start
17-03-17 20:02:26.018 -07 000000012 INF: MeasureProfile start
17-03-17 20:02:26.028 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:26.028 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:26.028 -07 000000012 INF: MeasureProfile done
17-03-17 20:02:26.038 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:02:26.038 -07 000000012 INF: Autofocus finished
17-03-17 20:02:26.038 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:02:26.058 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:26.258 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:26.258 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:02:26.258 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139294050465755. ----------
17-03-17 20:02:26.258 -07 000000610 INF: Cycle	33	Tile	4	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:26.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28923, sync = True, waitForSettling = True)
17-03-17 20:02:26.268 -07 000000610 INF: Z Motor: Moving to -0.132401 mm, started at -0.139294 mm, distance = 6.89 um
17-03-17 20:02:26.268 -07 000000610 INF: FPGA: Xmit ZDACW 28923\n [Z Motor]
17-03-17 20:02:26.268 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:02:26.278 -07 000000610 INF: FPGA: 'ZDACW 28923' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:02:26.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:26.278 -07 000000480 INF: FPGA: Recv ZDACR 28923
17-03-17 20:02:26.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.438 -07 000000462 INF: FPGA: Recv ZSGSRD 29904
17-03-17 20:02:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29905
17-03-17 20:02:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.458 -07 000000012 INF: FPGA: Recv ZSGSRD 29897
17-03-17 20:02:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.468 -07 000000459 INF: FPGA: Recv ZSGSRD 29903
17-03-17 20:02:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:02:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.488 -07 000000462 INF: FPGA: Recv ZSGSRD 29897
17-03-17 20:02:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.498 -07 000000012 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:02:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29905
17-03-17 20:02:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:02:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:26.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29901
17-03-17 20:02:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:26.538 -07 000000462 INF: FPGA: Recv ZPIEZORD 25537
17-03-17 20:02:26.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:26.548 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.6 V.
17-03-17 20:02:26.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29901 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29897 (-131.6 uncal um), Max = 29905 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:02:26.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29901, posNoise = 4, negNoise = 4
17-03-17 20:02:26.548 -07 000000610 INF: Z Motor: After move to -0.132401, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:26.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:02:26.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:26.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:26.548 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:26.548 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:26.548 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:26.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:26.548 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:26.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:26.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:02:26.548 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:26.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:26.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:26.558 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:26.558 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:26.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:26.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:26.568 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:02:26.568 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:02:26.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:02:26.568 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:02:26.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 29100 150\n [Camera]
17-03-17 20:02:26.748 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:26.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:26.948 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.001704,
17-03-17 20:02:27.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:27.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:27.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:27.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:27.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:27.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:02:27.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:27.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:27.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:27.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:02:27.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29100 793
17-03-17 20:02:27.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:27.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:02:27.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:02:27.558 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:02:27.558 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:27.558 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:02:27.558 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:27.568 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:27.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:02:27.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:02:27.568 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:02:27.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:27.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:27.718 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:27.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:27.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:27.838 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:27.838 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:27.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:02:27.848 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:27.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:02:27.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:27.908 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:27.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 29100 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:02:27.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:27.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132413719261929. ------
17-03-17 20:02:27.908 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:27.908 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13899 mm
17-03-17 20:02:27.908 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:27.918 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:27.918 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:27.918 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:27.918 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:02:27.918 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:02:27.918 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30361, sync = True, waitForSettling = False)
17-03-17 20:02:27.918 -07 000000462 INF: Z Motor: Moving to -0.138984 mm, started at -0.132414 mm, distance = -6.57 um
17-03-17 20:02:27.928 -07 000000462 INF: FPGA: Xmit ZDACW 30361\n [Z Motor]
17-03-17 20:02:27.928 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:02:27.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:27.938 -07 000000462 INF: FPGA: 'ZDACW 30361' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:02:27.938 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:02:27.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:02:27.948 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:27.948 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:27.948 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:02:27.948 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:27.948 -07 000000459 INF: FPGA: Recv ZDACR 30361
17-03-17 20:02:27.958 -07 000000462 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:02:27.958 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:02:27.958 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:28.118 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:28.118 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:28.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:02:28.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:02:28.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:28.238 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:02:28.238 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:02:28.238 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:28.248 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:28.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 20:02:28.248 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:28.248 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:02:28.328 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:02:28.328 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:02:28.368 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:28.368 -07 000000478 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:02:28.378 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:28.378 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:28.378 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:02:28.378 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 20:02:29.328 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:29.328 -07 000000486 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:02:29.338 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:29.338 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:29.358 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:29.358 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:29.358 -07 000000431 INF: Y Motor: Moved to 63.2241 after 1440 ms (table move)
17-03-17 20:02:29.358 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138984 mm (DAC = 30361)
17-03-17 20:02:29.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.358 -07 000000501 INF: FPGA: Recv ZSGSRD 30926
17-03-17 20:02:29.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:29.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.368 -07 000000593 INF: FPGA: Recv ZSGSRD 30921
17-03-17 20:02:29.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.378 -07 000000431 INF: FPGA: Recv ZSGSRD 30929
17-03-17 20:02:29.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30926
17-03-17 20:02:29.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.398 -07 000000431 INF: FPGA: Recv ZSGSRD 30926
17-03-17 20:02:29.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.408 -07 000000593 INF: FPGA: Recv ZSGSRD 30930
17-03-17 20:02:29.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.418 -07 000000478 INF: FPGA: Recv ZSGSRD 30924
17-03-17 20:02:29.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.428 -07 000000593 INF: FPGA: Recv ZSGSRD 30920
17-03-17 20:02:29.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.438 -07 000000478 INF: FPGA: Recv ZSGSRD 30921
17-03-17 20:02:29.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:29.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30929
17-03-17 20:02:29.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.458 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:29.458 -07 000000431 INF: FPGA: Recv ZPIEZORD 26906
17-03-17 20:02:29.468 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -8.8 V.
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30925 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30926 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30920 (-138.2 uncal um), Max = 30930 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30925, posNoise = 5, negNoise = 5
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: After move to -0.138984, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 20:02:29.468 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:29.518 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:02:29.518 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:29.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:29.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:29.518 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:29.518 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:29.518 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:29.518 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:29.518 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:29.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:29.528 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:29.528 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:29.538 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:29.538 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:02:29.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:29.588 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:29.788 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:29.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:29.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:29.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) start.
17-03-17 20:02:29.828 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:29.828 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:29.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:02:29.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:02:29.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:29.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:29.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:02:29.928 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:29.928 -07 000000478 INF: Autofocus start
17-03-17 20:02:29.928 -07 000000478 INF: MeasureProfile start
17-03-17 20:02:29.928 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:29.938 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:29.938 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:29.938 -07 000000478 INF: MeasureProfile done
17-03-17 20:02:29.938 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:02:29.938 -07 000000478 INF: Autofocus finished
17-03-17 20:02:30.138 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:30.138 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:02:30.148 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138992112495093. ----------
17-03-17 20:02:30.148 -07 000000610 INF: Cycle	33	Tile	5	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:30.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28885, sync = True, waitForSettling = True)
17-03-17 20:02:30.148 -07 000000610 INF: Z Motor: Moving to -0.132227 mm, started at -0.138992 mm, distance = 6.77 um
17-03-17 20:02:30.148 -07 000000610 INF: FPGA: Xmit ZDACW 28885\n [Z Motor]
17-03-17 20:02:30.148 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:02:30.158 -07 000000610 INF: FPGA: 'ZDACW 28885' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:30.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:30.158 -07 000000593 INF: FPGA: Recv ZDACR 28885
17-03-17 20:02:30.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.318 -07 000000593 INF: FPGA: Recv ZSGSRD 29869
17-03-17 20:02:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.328 -07 000000012 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:02:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29870
17-03-17 20:02:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.348 -07 000000012 INF: FPGA: Recv ZSGSRD 29870
17-03-17 20:02:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.358 -07 000000486 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:02:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.368 -07 000000012 INF: FPGA: Recv ZSGSRD 29866
17-03-17 20:02:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:02:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.388 -07 000000012 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:02:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:02:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:30.408 -07 000000501 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:02:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:30.418 -07 000000501 INF: FPGA: Recv ZPIEZORD 25486
17-03-17 20:02:30.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:30.428 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.6 V.
17-03-17 20:02:30.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29873 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29873 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29866 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:30.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29873, posNoise = 5, negNoise = 7
17-03-17 20:02:30.428 -07 000000610 INF: Z Motor: After move to -0.132227, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:30.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:02:30.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:30.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:30.428 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:30.428 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:30.428 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:30.428 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:30.428 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:30.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:30.428 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:02:30.428 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:30.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:30.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:30.438 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:30.438 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:30.438 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:30.438 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:30.448 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:02:30.448 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:02:30.448 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:02:30.448 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:02:30.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 29062 150\n [Camera]
17-03-17 20:02:30.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:31.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:31.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:31.068 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:31.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:31.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:31.078 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:31.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:31.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:02:31.078 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:31.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) start.
17-03-17 20:02:31.258 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29062 793
17-03-17 20:02:31.398 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:31.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:02:31.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:02:31.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:31.448 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:02:31.448 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:02:31.448 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:31.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:31.458 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:02:31.458 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:31.468 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:02:31.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:31.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:31.598 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:31.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:31.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:31.718 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:31.718 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:31.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:02:31.718 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:31.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:02:31.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:31.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:31.788 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:02:31.788 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:31.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 29062 150' command took 2 ms to send, 1328 ms to get response, and 1339 ms overall
17-03-17 20:02:31.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:31.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.13223384132196. ------
17-03-17 20:02:31.798 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13874 mm
17-03-17 20:02:31.798 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:31.798 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:31.798 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:02:31.798 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:02:31.798 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30307, sync = True, waitForSettling = False)
17-03-17 20:02:31.798 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:31.798 -07 000000608 INF: Z Motor: Moving to -0.138737 mm, started at -0.132234 mm, distance = -6.50 um
17-03-17 20:02:31.808 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:31.808 -07 000000608 INF: FPGA: Xmit ZDACW 30307\n [Z Motor]
17-03-17 20:02:31.808 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:02:31.818 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:31.818 -07 000000608 INF: FPGA: 'ZDACW 30307' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:02:31.818 -07 000000486 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:02:31.828 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:31.828 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:02:31.828 -07 000000448 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:31.828 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:31.828 -07 000000448 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:02:31.838 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:31.838 -07 000000626 INF: FPGA: Recv ZDACR 30307
17-03-17 20:02:31.848 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:31.848 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:02:31.848 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:32.028 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:32.028 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:02:32.118 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:02:32.118 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:02:32.118 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:32.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:02:32.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:02:32.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:32.118 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:32.118 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 20:02:32.118 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:32.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:02:32.218 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:02:32.218 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:02:32.258 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:32.258 -07 000000608 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:02:32.268 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:32.268 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:32.268 -07 000000448 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:02:32.268 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 20:02:32.308 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.037119,
17-03-17 20:02:33.218 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:33.218 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:02:33.228 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:33.228 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:33.238 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:33.238 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:33.238 -07 000000448 INF: Y Motor: Moved to 64.0571 after 1441 ms (table move)
17-03-17 20:02:33.248 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138737 mm (DAC = 30307)
17-03-17 20:02:33.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.248 -07 000000415 INF: FPGA: Recv ZSGSRD 30898
17-03-17 20:02:33.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:33.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.258 -07 000000478 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:02:33.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30885
17-03-17 20:02:33.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.278 -07 000000593 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:02:33.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30888
17-03-17 20:02:33.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.298 -07 000000593 INF: FPGA: Recv ZSGSRD 30883
17-03-17 20:02:33.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.308 -07 000000593 INF: FPGA: Recv ZSGSRD 30881
17-03-17 20:02:33.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.318 -07 000000593 INF: FPGA: Recv ZSGSRD 30879
17-03-17 20:02:33.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.328 -07 000000593 INF: FPGA: Recv ZSGSRD 30894
17-03-17 20:02:33.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:33.338 -07 000000415 INF: FPGA: Recv ZSGSRD 30878
17-03-17 20:02:33.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.348 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:33.348 -07 000000551 INF: FPGA: Recv ZPIEZORD 26855
17-03-17 20:02:33.358 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -8.9 V.
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30887 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30886 (-137.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30878 (-137.9 uncal um), Max = 30898 (-138.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30887, posNoise = 11, negNoise = 9
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: After move to -0.138737, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:02:33.358 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:33.408 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:02:33.408 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:33.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:33.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:33.408 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:33.408 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:33.408 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:33.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:33.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:33.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:33.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:33.418 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:33.428 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:33.428 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:02:33.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:33.478 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:33.678 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:33.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:33.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:33.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:33.718 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:33.718 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:33.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:02:33.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 20:02:33.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:33.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:33.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:02:33.828 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:33.828 -07 000000501 INF: Autofocus start
17-03-17 20:02:33.828 -07 000000501 INF: MeasureProfile start
17-03-17 20:02:33.838 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:33.838 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 20:02:33.838 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:33.848 -07 000000501 INF: MeasureProfile done
17-03-17 20:02:33.848 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:02:33.848 -07 000000501 INF: Autofocus finished
17-03-17 20:02:34.038 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:34.038 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 20:02:34.048 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138747992433706. ----------
17-03-17 20:02:34.048 -07 000000610 INF: Cycle	33	Tile	6	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:34.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28802, sync = True, waitForSettling = True)
17-03-17 20:02:34.058 -07 000000610 INF: Z Motor: Moving to -0.131847 mm, started at -0.138748 mm, distance = 6.90 um
17-03-17 20:02:34.058 -07 000000610 INF: FPGA: Xmit ZDACW 28802\n [Z Motor]
17-03-17 20:02:34.058 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:02:34.068 -07 000000610 INF: FPGA: 'ZDACW 28802' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:34.068 -07 000000478 INF: FPGA: Recv ZDACR 28802
17-03-17 20:02:34.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:02:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.238 -07 000000478 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:02:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:02:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:02:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:02:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:02:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.288 -07 000000626 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:02:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:02:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.308 -07 000000626 INF: FPGA: Recv ZSGSRD 29814
17-03-17 20:02:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:34.318 -07 000000501 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:02:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:34.328 -07 000000478 INF: FPGA: Recv ZPIEZORD 25464
17-03-17 20:02:34.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:34.338 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.6 V.
17-03-17 20:02:34.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29813 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29809 (-131.0 uncal um), Max = 29819 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:02:34.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29813, posNoise = 6, negNoise = 4
17-03-17 20:02:34.338 -07 000000610 INF: Z Motor: After move to -0.131847, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:34.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 20:02:34.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:34.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:34.338 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:34.338 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:34.338 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:34.338 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:34.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:34.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:34.338 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:02:34.338 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:34.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:02:34.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:34.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:34.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:34.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:34.348 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:34.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:34.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:34.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:02:34.358 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:02:34.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28979 150\n [Camera]
17-03-17 20:02:34.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:34.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:34.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:34.968 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:34.968 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:34.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:02:34.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:34.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:34.968 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:34.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:34.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 20:02:35.158 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 793
17-03-17 20:02:35.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:35.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:02:35.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:02:35.348 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:35.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:02:35.348 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:02:35.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:35.348 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:35.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:02:35.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:35.358 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:02:35.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:35.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:35.508 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:35.618 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:35.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:35.628 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:35.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:35.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:35.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:35.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:35.698 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:35.698 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:35.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28979 150' command took 2 ms to send, 1333 ms to get response, and 1338 ms overall
17-03-17 20:02:35.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:35.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131848388593454. ------
17-03-17 20:02:35.698 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:35.698 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13835 mm
17-03-17 20:02:35.698 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:36.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:02:36.018 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:02:36.018 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:36.018 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:36.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:02:36.028 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:02:36.028 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:36.028 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:36.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:02:36.028 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:02:36.048 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:36.048 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:02:36.048 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:02:36.048 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 345 ms to get response, and 346 ms overall
17-03-17 20:02:36.048 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:36.048 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30223, sync = True, waitForSettling = False)
17-03-17 20:02:36.048 -07 000000448 INF: Z Motor: Moving to -0.138352 mm, started at -0.131848 mm, distance = -6.50 um
17-03-17 20:02:36.058 -07 000000448 INF: FPGA: Xmit ZDACW 30223\n [Z Motor]
17-03-17 20:02:36.068 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:36.738 -07 000000462 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:02:36.738 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:02:36.738 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:36.738 -07 000000448 INF: FPGA: 'ZDACW 30223' command took 0 ms to send, 670 ms to get response, and 681 ms overall
17-03-17 20:02:36.738 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:36.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 680 ms to get response, and 682 ms overall
17-03-17 20:02:36.738 -07 000000501 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:36.738 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 660 ms to get response, and 682 ms overall
17-03-17 20:02:36.738 -07 000000626 INF: FPGA: Recv ZDACR 30223
17-03-17 20:02:36.738 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:36.738 -07 000000501 INF: Y Motor: Moving 1336 steps-11
17-03-17 20:02:36.748 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:36.748 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:36.748 -07 000000448 INF: Z Motor: MoveAbsStepped took 690 ms (did NOT wait for settling yet))
17-03-17 20:02:36.748 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:37.118 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:02:37.118 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 20:02:37.158 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:37.158 -07 000000593 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:02:37.168 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:37.168 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:37.168 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:02:37.168 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.835 mm, average velocity = 2.193 mm/sec
17-03-17 20:02:37.668 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.019446,
17-03-17 20:02:38.118 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:38.118 -07 000000482 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:02:38.128 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.128 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:38.148 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:38.148 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:38.148 -07 000000501 INF: Y Motor: Moved to 64.8789 after 2098 ms (table move)
17-03-17 20:02:38.148 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138352 mm (DAC = 30223)
17-03-17 20:02:38.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.158 -07 000000593 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:02:38.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:02:38.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.158 -07 000000593 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:02:38.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.168 -07 000000593 INF: FPGA: Recv ZSGSRD 30821
17-03-17 20:02:38.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.178 -07 000000593 INF: FPGA: Recv ZSGSRD 30836
17-03-17 20:02:38.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.188 -07 000000593 INF: FPGA: Recv ZSGSRD 30832
17-03-17 20:02:38.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.198 -07 000000593 INF: FPGA: Recv ZSGSRD 30826
17-03-17 20:02:38.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.208 -07 000000593 INF: FPGA: Recv ZSGSRD 30819
17-03-17 20:02:38.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.218 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.218 -07 000000593 INF: FPGA: Recv ZSGSRD 30819
17-03-17 20:02:38.228 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.228 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.228 -07 000000593 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:02:38.238 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:38.238 -07 000000593 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:02:38.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.248 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:38.248 -07 000000593 INF: FPGA: Recv ZPIEZORD 26812
17-03-17 20:02:38.258 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.8 V.
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30826 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30825 (-137.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30819 (-137.5 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30826, posNoise = 10, negNoise = 7
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: After move to -0.138352, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: Settle wait time = 2097 ms, measure time = 103 ms (allowed 150 ms), total time = 2200 ms
17-03-17 20:02:38.258 -07 000000478 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:38.308 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2601 ms
17-03-17 20:02:38.308 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:38.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:38.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:38.308 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:38.308 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:38.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:38.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:38.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:38.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:38.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:38.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:38.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:38.318 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:02:38.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:38.368 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:38.568 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:38.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:38.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:38.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:38.608 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:38.608 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:38.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:02:38.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:02:38.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:38.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:38.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:02:38.708 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:38.708 -07 000000462 INF: Autofocus start
17-03-17 20:02:38.708 -07 000000462 INF: MeasureProfile start
17-03-17 20:02:38.708 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:38.718 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:38.718 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:38.718 -07 000000462 INF: MeasureProfile done
17-03-17 20:02:38.718 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:02:38.718 -07 000000462 INF: Autofocus finished
17-03-17 20:02:38.918 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:38.918 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:38.918 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138356115493058. ----------
17-03-17 20:02:38.918 -07 000000610 INF: Cycle	33	Tile	7	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:38.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-17 20:02:38.928 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138356 mm, distance = 6.68 um
17-03-17 20:02:38.928 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-17 20:02:38.928 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:02:38.938 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:38.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:38.938 -07 000000480 INF: FPGA: Recv ZDACR 28764
17-03-17 20:02:38.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:38.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.098 -07 000000482 INF: FPGA: Recv ZSGSRD 29786
17-03-17 20:02:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.108 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 20:02:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:02:39.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29782
17-03-17 20:02:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.138 -07 000000482 INF: FPGA: Recv ZSGSRD 29784
17-03-17 20:02:39.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:02:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29781
17-03-17 20:02:39.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.168 -07 000000482 INF: FPGA: Recv ZSGSRD 29785
17-03-17 20:02:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:39.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.178 -07 000000482 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:02:39.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:39.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:02:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:39.198 -07 000000482 INF: FPGA: Recv ZPIEZORD 25470
17-03-17 20:02:39.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:39.208 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.5 V.
17-03-17 20:02:39.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29787 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29781 (-130.9 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:39.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 5, negNoise = 6
17-03-17 20:02:39.208 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:39.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:02:39.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:39.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:39.208 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:39.208 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:39.208 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:39.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:39.208 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:39.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:39.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:39.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:39.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:02:39.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:39.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:39.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:39.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:39.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:39.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:02:39.218 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:39.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:39.218 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:39.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28941 150\n [Camera]
17-03-17 20:02:39.428 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:39.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:39.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:39.838 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:39.838 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:39.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:39.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:39.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:39.838 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:39.838 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:39.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:40.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 793
17-03-17 20:02:40.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:40.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:02:40.228 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:02:40.228 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:40.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:02:40.238 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:02:40.238 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:40.238 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:40.238 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:40.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:02:40.238 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:02:40.368 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:40.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:40.378 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:40.488 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:40.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:40.488 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:40.488 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:40.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:40.488 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:40.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:40.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:02:40.568 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:40.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28941 150' command took 2 ms to send, 1332 ms to get response, and 1339 ms overall
17-03-17 20:02:40.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:40.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131681359077769. ------
17-03-17 20:02:40.568 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:40.568 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13826 mm
17-03-17 20:02:40.568 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:40.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:02:40.888 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:02:40.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:02:40.888 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:02:40.888 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:40.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:40.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:40.898 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 20:02:40.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:02:40.908 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:02:40.908 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:02:40.908 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:02:40.908 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:40.908 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:40.908 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:02:40.918 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 342 ms overall
17-03-17 20:02:40.918 -07 000000480 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:40.918 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:40.918 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:40.918 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30203, sync = True, waitForSettling = False)
17-03-17 20:02:40.918 -07 000000012 INF: Z Motor: Moving to -0.138260 mm, started at -0.131681 mm, distance = -6.58 um
17-03-17 20:02:40.918 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:40.918 -07 000000480 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:02:40.928 -07 000000012 INF: FPGA: Xmit ZDACW 30203\n [Z Motor]
17-03-17 20:02:40.938 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:41.738 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:02:41.738 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:41.738 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:02:41.738 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 790 ms to get response, and 816 ms overall
17-03-17 20:02:41.738 -07 000000012 INF: FPGA: 'ZDACW 30203' command took 0 ms to send, 800 ms to get response, and 819 ms overall
17-03-17 20:02:41.738 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:41.738 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 810 ms to get response, and 820 ms overall
17-03-17 20:02:41.738 -07 000000547 INF: FPGA: Recv ZDACR 30203
17-03-17 20:02:41.748 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:41.748 -07 000000012 INF: Z Motor: MoveAbsStepped took 828 ms (did NOT wait for settling yet))
17-03-17 20:02:41.748 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:41.768 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:41.778 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:02:41.778 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:02:41.778 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:41.778 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:02:41.778 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 816 ms, distance = 0.844 mm, average velocity = 1.034 mm/sec
17-03-17 20:02:42.728 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:42.728 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:02:42.738 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:42.738 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:42.758 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:42.758 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:42.758 -07 000000480 INF: Y Motor: Moved to 65.7144 after 1851 ms (table move)
17-03-17 20:02:42.758 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138260 mm (DAC = 30203)
17-03-17 20:02:42.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.768 -07 000000608 INF: FPGA: Recv ZSGSRD 30807
17-03-17 20:02:42.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:02:42.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.768 -07 000000482 INF: FPGA: Recv ZSGSRD 30805
17-03-17 20:02:42.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:42.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30812
17-03-17 20:02:42.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.788 -07 000000547 INF: FPGA: Recv ZSGSRD 30810
17-03-17 20:02:42.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.798 -07 000000459 INF: FPGA: Recv ZSGSRD 30815
17-03-17 20:02:42.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.808 -07 000000547 INF: FPGA: Recv ZSGSRD 30812
17-03-17 20:02:42.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30816
17-03-17 20:02:42.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.828 -07 000000551 INF: FPGA: Recv ZSGSRD 30809
17-03-17 20:02:42.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.838 -07 000000480 INF: FPGA: Recv ZSGSRD 30810
17-03-17 20:02:42.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:42.848 -07 000000547 INF: FPGA: Recv ZSGSRD 30814
17-03-17 20:02:42.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.858 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:42.858 -07 000000480 INF: FPGA: Recv ZPIEZORD 26808
17-03-17 20:02:42.868 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -8.8 V.
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30811 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30811 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30805 (-137.4 uncal um), Max = 30816 (-137.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30811, posNoise = 5, negNoise = 6
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: After move to -0.138260, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: Settle wait time = 1847 ms, measure time = 102 ms (allowed 150 ms), total time = 1949 ms
17-03-17 20:02:42.868 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:42.918 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2342 ms
17-03-17 20:02:42.918 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:42.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:42.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:42.918 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:42.918 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:42.918 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:42.918 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:42.918 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:42.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:42.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:42.928 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:42.928 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:42.928 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:02:42.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:42.978 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:43.028 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.024884,
17-03-17 20:02:43.178 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:43.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:43.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:43.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:43.218 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:43.218 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:43.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:02:43.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:02:43.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:43.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:43.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:02:43.318 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:43.318 -07 000000480 INF: Autofocus start
17-03-17 20:02:43.318 -07 000000480 INF: MeasureProfile start
17-03-17 20:02:43.318 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:43.328 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:43.328 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:43.328 -07 000000480 INF: MeasureProfile done
17-03-17 20:02:43.328 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:02:43.328 -07 000000480 INF: Autofocus finished
17-03-17 20:02:43.528 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:43.528 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:43.528 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138259752310932. ----------
17-03-17 20:02:43.528 -07 000000610 INF: Cycle	33	Tile	8	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:43.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28727, sync = True, waitForSettling = True)
17-03-17 20:02:43.538 -07 000000610 INF: Z Motor: Moving to -0.131504 mm, started at -0.138260 mm, distance = 6.76 um
17-03-17 20:02:43.538 -07 000000610 INF: FPGA: Xmit ZDACW 28727\n [Z Motor]
17-03-17 20:02:43.538 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:02:43.548 -07 000000610 INF: FPGA: 'ZDACW 28727' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:43.548 -07 000000462 INF: FPGA: Recv ZDACR 28727
17-03-17 20:02:43.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:43.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.708 -07 000000482 INF: FPGA: Recv ZSGSRD 29764
17-03-17 20:02:43.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:43.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:02:43.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.728 -07 000000608 INF: FPGA: Recv ZSGSRD 29756
17-03-17 20:02:43.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29767
17-03-17 20:02:43.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29757
17-03-17 20:02:43.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.758 -07 000000486 INF: FPGA: Recv ZSGSRD 29762
17-03-17 20:02:43.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.768 -07 000000480 INF: FPGA: Recv ZSGSRD 29767
17-03-17 20:02:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29757
17-03-17 20:02:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29764
17-03-17 20:02:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:43.798 -07 000000448 INF: FPGA: Recv ZSGSRD 29758
17-03-17 20:02:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:43.808 -07 000000486 INF: FPGA: Recv ZPIEZORD 25406
17-03-17 20:02:43.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:43.818 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.6 V.
17-03-17 20:02:43.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29762 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29762 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29756 (-130.7 uncal um), Max = 29767 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:43.818 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29762, posNoise = 5, negNoise = 6
17-03-17 20:02:43.818 -07 000000610 INF: Z Motor: After move to -0.131504, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:43.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:02:43.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:43.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:43.818 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:43.818 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:43.818 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:43.818 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:43.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:43.818 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:43.818 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:02:43.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:02:43.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:43.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:43.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:43.828 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:43.828 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:43.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:43.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:02:43.838 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:02:43.838 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:02:43.838 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:02:43.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28904 150\n [Camera]
17-03-17 20:02:44.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:02:44.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:44.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:44.448 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:44.448 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:44.448 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:44.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:44.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:44.458 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:44.458 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:44.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:44.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28904 793
17-03-17 20:02:44.788 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:44.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:02:44.848 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:02:44.848 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:44.858 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:44.858 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:02:44.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:02:44.858 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:02:44.858 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:44.858 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:44.868 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:02:44.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:44.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:45.098 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:45.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:45.098 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:45.098 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:45.098 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:45.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:45.108 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:45.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:45.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:45.178 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:45.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28904 150' command took 2 ms to send, 1328 ms to get response, and 1339 ms overall
17-03-17 20:02:45.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:45.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131520753774225. ------
17-03-17 20:02:45.188 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:45.188 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13793 mm
17-03-17 20:02:45.188 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:45.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 20:02:45.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 20:02:45.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:02:45.508 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:45.508 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:02:45.508 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:45.518 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:45.518 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:02:45.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:45.518 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:02:45.528 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:02:45.528 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:02:45.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:45.528 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:45.528 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:02:45.528 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 345 ms overall
17-03-17 20:02:45.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:45.538 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:45.538 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:45.538 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:02:45.538 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:45.538 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30131, sync = True, waitForSettling = False)
17-03-17 20:02:45.538 -07 000000486 INF: Z Motor: Moving to -0.137931 mm, started at -0.131521 mm, distance = -6.41 um
17-03-17 20:02:45.548 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:45.558 -07 000000486 INF: FPGA: Xmit ZDACW 30131\n [Z Motor]
17-03-17 20:02:46.238 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:02:46.238 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:46.238 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:02:46.238 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 690 ms to get response, and 700 ms overall
17-03-17 20:02:46.238 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 680 ms to get response, and 700 ms overall
17-03-17 20:02:46.238 -07 000000486 INF: FPGA: 'ZDACW 30131' command took 0 ms to send, 670 ms to get response, and 699 ms overall
17-03-17 20:02:46.238 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:46.238 -07 000000501 INF: FPGA: Recv ZDACR 30131
17-03-17 20:02:46.248 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:46.248 -07 000000486 INF: Z Motor: MoveAbsStepped took 708 ms (did NOT wait for settling yet))
17-03-17 20:02:46.268 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:46.278 -07 000000486 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:02:46.278 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:46.278 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:46.278 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:02:46.278 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 700 ms, distance = 0.838 mm, average velocity = 1.197 mm/sec
17-03-17 20:02:46.748 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:47.228 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:47.228 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:02:47.238 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:47.238 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:47.258 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:47.258 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:47.258 -07 000000480 INF: Y Motor: Moved to 66.5391 after 1730 ms (table move)
17-03-17 20:02:47.258 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137931 mm (DAC = 30131)
17-03-17 20:02:47.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.268 -07 000000486 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:02:47.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:02:47.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:02:47.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:47.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30763
17-03-17 20:02:47.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30749
17-03-17 20:02:47.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.298 -07 000000448 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:02:47.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:02:47.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.318 -07 000000486 INF: FPGA: Recv ZSGSRD 30767
17-03-17 20:02:47.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.328 -07 000000501 INF: FPGA: Recv ZSGSRD 30756
17-03-17 20:02:47.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.338 -07 000000593 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:02:47.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:47.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:02:47.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.358 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:47.358 -07 000000593 INF: FPGA: Recv ZPIEZORD 26762
17-03-17 20:02:47.368 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.8 V.
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30760 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30762 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30749 (-137.1 uncal um), Max = 30767 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30760, posNoise = 7, negNoise = 11
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: After move to -0.137931, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: Settle wait time = 1726 ms, measure time = 103 ms (allowed 150 ms), total time = 1829 ms
17-03-17 20:02:47.368 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:47.418 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2225 ms
17-03-17 20:02:47.418 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:47.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:47.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:47.418 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:47.418 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:47.418 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:47.418 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:47.418 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:02:47.418 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:47.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:47.428 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:47.428 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:47.428 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:02:47.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:47.478 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:47.678 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:47.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:47.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:47.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:47.718 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:47.718 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:47.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:02:47.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:02:47.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:47.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:47.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:02:47.818 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:47.818 -07 000000480 INF: Autofocus start
17-03-17 20:02:47.818 -07 000000480 INF: MeasureProfile start
17-03-17 20:02:47.818 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:47.828 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:47.828 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:47.828 -07 000000480 INF: MeasureProfile done
17-03-17 20:02:47.828 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:02:47.828 -07 000000480 INF: Autofocus finished
17-03-17 20:02:48.028 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:48.028 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:48.028 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137932117491702. ----------
17-03-17 20:02:48.038 -07 000000610 INF: Cycle	33	Tile	9	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:48.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28625, sync = True, waitForSettling = True)
17-03-17 20:02:48.038 -07 000000610 INF: Z Motor: Moving to -0.131037 mm, started at -0.137932 mm, distance = 6.90 um
17-03-17 20:02:48.038 -07 000000610 INF: FPGA: Xmit ZDACW 28625\n [Z Motor]
17-03-17 20:02:48.038 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:02:48.048 -07 000000610 INF: FPGA: 'ZDACW 28625' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:02:48.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:48.048 -07 000000486 INF: FPGA: Recv ZDACR 28625
17-03-17 20:02:48.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.208 -07 000000448 INF: FPGA: Recv ZSGSRD 29685
17-03-17 20:02:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:02:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:02:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.238 -07 000000448 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:02:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.248 -07 000000415 INF: FPGA: Recv ZSGSRD 29684
17-03-17 20:02:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.258 -07 000000480 INF: FPGA: Recv ZSGSRD 29688
17-03-17 20:02:48.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.268 -07 000000593 INF: FPGA: Recv ZSGSRD 29686
17-03-17 20:02:48.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:02:48.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.288 -07 000000486 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:02:48.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:48.298 -07 000000480 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:02:48.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:48.308 -07 000000480 INF: FPGA: Recv ZPIEZORD 25385
17-03-17 20:02:48.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:48.318 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.4 V.
17-03-17 20:02:48.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29687 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29684 (-130.2 uncal um), Max = 29696 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:02:48.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 8, negNoise = 4
17-03-17 20:02:48.318 -07 000000610 INF: Z Motor: After move to -0.131037, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:48.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:02:48.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:48.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:48.318 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:48.318 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:48.318 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:48.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:48.318 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:48.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:48.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:48.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:48.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:48.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:48.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:02:48.328 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:48.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:02:48.328 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:48.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:02:48.338 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:02:48.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:02:48.338 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:02:48.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28802 150\n [Camera]
17-03-17 20:02:48.388 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.02213,
17-03-17 20:02:48.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:48.948 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:48.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:48.958 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:48.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:48.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:48.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:48.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:48.958 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:48.958 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:48.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:49.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 793
17-03-17 20:02:49.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:49.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:02:49.358 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:02:49.358 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:49.358 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:02:49.358 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:02:49.358 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:49.358 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:49.358 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:02:49.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:49.368 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:02:49.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:49.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:49.488 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:49.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:49.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:49.608 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:49.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:49.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:49.608 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:49.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:49.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:49.688 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:49.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28802 150' command took 2 ms to send, 1330 ms to get response, and 1339 ms overall
17-03-17 20:02:49.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:49.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.131045362075734. ------
17-03-17 20:02:49.688 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:49.688 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13777 mm
17-03-17 20:02:49.688 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:50.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:02:50.008 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:02:50.008 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:50.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:02:50.008 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:02:50.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:50.018 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:50.018 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:50.018 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:02:50.018 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:02:50.028 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:50.028 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 333 ms to get response, and 338 ms overall
17-03-17 20:02:50.028 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:02:50.028 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:02:50.028 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:50.028 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30095, sync = True, waitForSettling = False)
17-03-17 20:02:50.028 -07 000000482 INF: Z Motor: Moving to -0.137766 mm, started at -0.131045 mm, distance = -6.72 um
17-03-17 20:02:50.038 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:50.038 -07 000000462 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:02:50.048 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:02:50.048 -07 000000608 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:50.048 -07 000000482 INF: FPGA: Xmit ZDACW 30095\n [Z Motor]
17-03-17 20:02:50.048 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:02:50.048 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:50.048 -07 000000608 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:02:50.058 -07 000000482 INF: FPGA: 'ZDACW 30095' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:02:50.058 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:50.058 -07 000000551 INF: FPGA: Recv ZDACR 30095
17-03-17 20:02:50.068 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:50.068 -07 000000482 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 20:02:50.068 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:50.228 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:50.228 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 20:02:50.438 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:02:50.438 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-17 20:02:50.478 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:50.478 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:02:50.488 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:50.488 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:50.488 -07 000000608 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:02:50.488 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 20:02:51.438 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:51.438 -07 000000486 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:02:51.448 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:51.448 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:51.468 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:51.468 -07 000000608 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:51.468 -07 000000608 INF: Y Motor: Moved to 67.3721 after 1436 ms (table move)
17-03-17 20:02:51.468 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137766 mm (DAC = 30095)
17-03-17 20:02:51.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.468 -07 000000482 INF: FPGA: Recv ZSGSRD 30738
17-03-17 20:02:51.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:02:51.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30738
17-03-17 20:02:51.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30732
17-03-17 20:02:51.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.498 -07 000000551 INF: FPGA: Recv ZSGSRD 30738
17-03-17 20:02:51.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30735
17-03-17 20:02:51.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.518 -07 000000486 INF: FPGA: Recv ZSGSRD 30742
17-03-17 20:02:51.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.528 -07 000000486 INF: FPGA: Recv ZSGSRD 30737
17-03-17 20:02:51.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.538 -07 000000486 INF: FPGA: Recv ZSGSRD 30730
17-03-17 20:02:51.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.548 -07 000000486 INF: FPGA: Recv ZSGSRD 30732
17-03-17 20:02:51.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:51.558 -07 000000486 INF: FPGA: Recv ZSGSRD 30736
17-03-17 20:02:51.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.568 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:51.568 -07 000000486 INF: FPGA: Recv ZPIEZORD 26742
17-03-17 20:02:51.578 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -8.8 V.
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30736 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30730 (-136.9 uncal um), Max = 30742 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30736, posNoise = 6, negNoise = 6
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: After move to -0.137766, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:02:51.578 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:51.628 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1934 ms
17-03-17 20:02:51.628 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:51.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:51.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:51.628 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:51.628 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:51.628 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:51.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:51.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:51.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:51.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:51.638 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:51.638 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:02:51.638 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:02:51.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:51.688 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:02:51.748 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:51.888 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:02:51.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:02:51.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:51.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:51.928 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:51.928 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:51.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:02:52.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:02:52.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:52.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:52.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:02:52.028 -07 000000486 INF: Autofocus start
17-03-17 20:02:52.028 -07 000000486 INF: MeasureProfile start
17-03-17 20:02:52.028 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:52.028 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:52.038 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:52.038 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:52.038 -07 000000486 INF: MeasureProfile done
17-03-17 20:02:52.038 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:02:52.038 -07 000000486 INF: Autofocus finished
17-03-17 20:02:52.238 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:52.238 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:52.238 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.1377779364003. ----------
17-03-17 20:02:52.248 -07 000000610 INF: Cycle	33	Tile	10	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:52.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28636, sync = True, waitForSettling = True)
17-03-17 20:02:52.248 -07 000000610 INF: Z Motor: Moving to -0.131087 mm, started at -0.137778 mm, distance = 6.69 um
17-03-17 20:02:52.248 -07 000000610 INF: FPGA: Xmit ZDACW 28636\n [Z Motor]
17-03-17 20:02:52.248 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:02:52.258 -07 000000610 INF: FPGA: 'ZDACW 28636' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:02:52.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:52.258 -07 000000462 INF: FPGA: Recv ZDACR 28636
17-03-17 20:02:52.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.418 -07 000000547 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:02:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:02:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.438 -07 000000547 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:02:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:02:52.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.458 -07 000000626 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:02:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:02:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:02:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:02:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:02:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:52.508 -07 000000547 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:02:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:52.518 -07 000000462 INF: FPGA: Recv ZPIEZORD 25401
17-03-17 20:02:52.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:52.528 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.4 V.
17-03-17 20:02:52.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29696 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29690 (-130.3 uncal um), Max = 29700 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:02:52.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29696, posNoise = 4, negNoise = 6
17-03-17 20:02:52.528 -07 000000610 INF: Z Motor: After move to -0.131087, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:52.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:02:52.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:52.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:52.528 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:52.528 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:52.528 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:52.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:52.528 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:52.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:52.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:52.528 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:52.538 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:52.538 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:52.538 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:52.538 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:52.538 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:02:52.538 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:52.548 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:02:52.548 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:02:52.548 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:02:52.548 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:02:52.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28813 150\n [Camera]
17-03-17 20:02:52.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:02:53.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:53.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:53.158 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:53.158 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:53.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:53.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:53.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:53.158 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:53.158 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:53.158 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:53.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28813 793
17-03-17 20:02:53.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:53.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:02:53.558 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:02:53.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:53.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:53.558 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:02:53.558 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:02:53.558 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:02:53.558 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:53.558 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:53.568 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:02:53.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:02:53.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:02:53.698 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:53.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:02:53.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:02:53.808 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:53.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:53.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:53.808 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:53.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:53.818 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.020806,
17-03-17 20:02:53.888 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:53.888 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:53.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28813 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-17 20:02:53.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:53.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131096755772868. ------
17-03-17 20:02:53.888 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:53.898 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13756 mm
17-03-17 20:02:53.898 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:53.898 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:53.898 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30050, sync = True, waitForSettling = False)
17-03-17 20:02:53.898 -07 000000459 INF: Z Motor: Moving to -0.137560 mm, started at -0.131097 mm, distance = -6.46 um
17-03-17 20:02:53.898 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:02:53.898 -07 000000551 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:02:53.908 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:53.908 -07 000000459 INF: FPGA: Xmit ZDACW 30050\n [Z Motor]
17-03-17 20:02:53.908 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:02:53.918 -07 000000459 INF: FPGA: 'ZDACW 30050' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:02:53.918 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:53.918 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:02:53.928 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:53.928 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:02:53.928 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:53.928 -07 000000551 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:53.928 -07 000000551 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:02:53.938 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:53.938 -07 000000478 INF: FPGA: Recv ZDACR 30050
17-03-17 20:02:53.948 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:02:53.948 -07 000000459 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:02:53.948 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:54.128 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:54.128 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:02:54.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:02:54.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:02:54.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:54.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:02:54.208 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:02:54.208 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:54.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:54.218 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 20:02:54.218 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:02:54.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:02:54.318 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:02:54.318 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:02:54.358 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:54.358 -07 000000593 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:02:54.368 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:54.368 -07 000000551 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:54.368 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:02:54.368 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:02:55.318 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:55.318 -07 000000593 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:02:55.328 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:55.328 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:55.338 -07 000000551 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:55.338 -07 000000551 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:02:55.338 -07 000000551 INF: Y Motor: Moved to 68.2056 after 1446 ms (table move)
17-03-17 20:02:55.348 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137560 mm (DAC = 30050)
17-03-17 20:02:55.348 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.348 -07 000000593 INF: FPGA: Recv ZSGSRD 30706
17-03-17 20:02:55.358 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:55.358 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.358 -07 000000547 INF: FPGA: Recv ZSGSRD 30700
17-03-17 20:02:55.368 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.368 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.368 -07 000000547 INF: FPGA: Recv ZSGSRD 30710
17-03-17 20:02:55.378 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.378 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.378 -07 000000547 INF: FPGA: Recv ZSGSRD 30707
17-03-17 20:02:55.388 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.388 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.388 -07 000000482 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:02:55.398 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.398 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.398 -07 000000551 INF: FPGA: Recv ZSGSRD 30709
17-03-17 20:02:55.408 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.408 -07 000000459 INF: FPGA: Recv ZSGSRD 30703
17-03-17 20:02:55.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.418 -07 000000431 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:02:55.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.428 -07 000000415 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:02:55.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:55.438 -07 000000551 INF: FPGA: Recv ZSGSRD 30708
17-03-17 20:02:55.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.448 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:55.448 -07 000000551 INF: FPGA: Recv ZPIEZORD 26687
17-03-17 20:02:55.458 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -8.8 V.
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30697 (-136.7 uncal um), Max = 30710 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 6, negNoise = 7
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: After move to -0.137560, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:02:55.458 -07 000000448 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:55.508 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 20:02:55.508 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:55.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:55.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:55.508 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:55.508 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:55.508 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:55.508 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:55.508 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:55.508 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:55.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:55.518 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:55.528 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:02:55.528 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:02:55.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:55.578 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:55.778 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:55.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:55.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:55.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:55.818 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:55.818 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:55.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:02:55.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:02:55.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:55.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:02:55.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:02:55.918 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:55.918 -07 000000486 INF: Autofocus start
17-03-17 20:02:55.918 -07 000000486 INF: MeasureProfile start
17-03-17 20:02:55.918 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:55.928 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:55.928 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:02:55.928 -07 000000486 INF: MeasureProfile done
17-03-17 20:02:55.928 -07 000000486 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 20:02:55.928 -07 000000486 INF: Autofocus finished
17-03-17 20:02:56.128 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:02:56.128 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:02:56.128 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137572361611763. ----------
17-03-17 20:02:56.128 -07 000000610 INF: Cycle	33	Tile	11	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:02:56.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28557, sync = True, waitForSettling = True)
17-03-17 20:02:56.138 -07 000000610 INF: Z Motor: Moving to -0.130726 mm, started at -0.137572 mm, distance = 6.85 um
17-03-17 20:02:56.138 -07 000000610 INF: FPGA: Xmit ZDACW 28557\n [Z Motor]
17-03-17 20:02:56.138 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:02:56.148 -07 000000610 INF: FPGA: 'ZDACW 28557' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:02:56.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:56.148 -07 000000486 INF: FPGA: Recv ZDACR 28557
17-03-17 20:02:56.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:02:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.308 -07 000000459 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:02:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29639
17-03-17 20:02:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.328 -07 000000431 INF: FPGA: Recv ZSGSRD 29646
17-03-17 20:02:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.338 -07 000000431 INF: FPGA: Recv ZSGSRD 29639
17-03-17 20:02:56.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29632
17-03-17 20:02:56.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29647
17-03-17 20:02:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29637
17-03-17 20:02:56.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.378 -07 000000431 INF: FPGA: Recv ZSGSRD 29639
17-03-17 20:02:56.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29638
17-03-17 20:02:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:56.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29636
17-03-17 20:02:56.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:56.408 -07 000000431 INF: FPGA: Recv ZPIEZORD 25327
17-03-17 20:02:56.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:56.418 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V.
17-03-17 20:02:56.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29639 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29632 (-129.9 uncal um), Max = 29647 (-130.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:02:56.418 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 7, negNoise = 8
17-03-17 20:02:56.418 -07 000000610 INF: Z Motor: After move to -0.130726, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:56.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:02:56.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:56.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:56.418 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:56.418 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:56.428 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:02:56.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:56.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:56.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:02:56.428 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:02:56.428 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:02:56.428 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:02:56.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:02:56.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:02:56.428 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:02:56.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:02:56.428 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:02:56.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:02:56.438 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:02:56.438 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:02:56.438 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:02:56.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28733 150\n [Camera]
17-03-17 20:02:56.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:02:56.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:02:56.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:02:57.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:02:57.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:02:57.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:57.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:57.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:02:57.058 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:02:57.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:02:57.058 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:57.058 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:57.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:02:57.248 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28733 795
17-03-17 20:02:57.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:02:57.438 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:02:57.438 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:02:57.438 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:57.438 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:57.438 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:02:57.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:02:57.438 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:02:57.438 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:57.448 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:57.448 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:02:57.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1141
17-03-17 20:02:57.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1141
17-03-17 20:02:57.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:02:57.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1141
17-03-17 20:02:57.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1141
17-03-17 20:02:57.718 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:02:57.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:02:57.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:02:57.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:02:57.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:02:57.778 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:02:57.778 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:02:57.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28733 150' command took 2 ms to send, 1329 ms to get response, and 1338 ms overall
17-03-17 20:02:57.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:02:57.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.13073699989293. ------
17-03-17 20:02:57.788 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:57.788 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13740 mm
17-03-17 20:02:57.788 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:02:57.788 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:57.788 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30016, sync = True, waitForSettling = False)
17-03-17 20:02:57.788 -07 000000482 INF: Z Motor: Moving to -0.137404 mm, started at -0.130737 mm, distance = -6.67 um
17-03-17 20:02:57.788 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:02:57.788 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:02:57.798 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:02:57.798 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:57.798 -07 000000626 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:02:57.808 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:02:57.808 -07 000000480 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:57.808 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:02:57.808 -07 000000480 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:02:57.808 -07 000000482 INF: FPGA: Xmit ZDACW 30016\n [Z Motor]
17-03-17 20:02:57.808 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:02:57.818 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:02:57.818 -07 000000482 INF: FPGA: 'ZDACW 30016' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:02:57.828 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:02:57.838 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:02:57.838 -07 000000626 INF: FPGA: Recv ZDACR 30016
17-03-17 20:02:57.848 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:02:57.848 -07 000000482 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:02:58.018 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:02:58.018 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:02:58.098 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:02:58.098 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:02:58.098 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:58.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:02:58.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:02:58.108 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:58.108 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:58.108 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:02:58.108 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:02:58.118 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:02:58.198 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:02:58.198 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:02:58.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:58.238 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:02:58.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:02:58.248 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:58.248 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:02:58.248 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 20:02:59.178 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.996267,
17-03-17 20:02:59.198 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:02:59.198 -07 000000448 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:02:59.208 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.208 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:02:59.228 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:02:59.228 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:02:59.228 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1434 ms (table move)
17-03-17 20:02:59.228 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137404 mm (DAC = 30016)
17-03-17 20:02:59.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30684
17-03-17 20:02:59.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:02:59.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.238 -07 000000448 INF: FPGA: Recv ZSGSRD 30683
17-03-17 20:02:59.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.248 -07 000000480 INF: FPGA: Recv ZSGSRD 30675
17-03-17 20:02:59.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:02:59.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.268 -07 000000482 INF: FPGA: Recv ZSGSRD 30686
17-03-17 20:02:59.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30680
17-03-17 20:02:59.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.288 -07 000000608 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:02:59.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:02:59.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.308 -07 000000431 INF: FPGA: Recv ZSGSRD 30673
17-03-17 20:02:59.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:02:59.318 -07 000000431 INF: FPGA: Recv ZSGSRD 30680
17-03-17 20:02:59.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.328 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:02:59.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 26671
17-03-17 20:02:59.338 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -8.8 V.
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30680 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30681 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30673 (-136.6 uncal um), Max = 30686 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30680, posNoise = 6, negNoise = 7
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: After move to -0.137404, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:02:59.338 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:02:59.388 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:02:59.388 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:02:59.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:02:59.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:02:59.388 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:02:59.388 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:02:59.388 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:02:59.388 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:02:59.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:02:59.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:02:59.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:02:59.398 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:02:59.408 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:02:59.408 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:02:59.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:02:59.458 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:02:59.658 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:02:59.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:02:59.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:02:59.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:02:59.698 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:02:59.698 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:02:59.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:02:59.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:02:59.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:02:59.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:02:59.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:02:59.798 -07 000000012 INF: Autofocus start
17-03-17 20:02:59.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:02:59.798 -07 000000012 INF: MeasureProfile start
17-03-17 20:02:59.808 -07 000000012 INF: MeasureProfile done
17-03-17 20:02:59.808 -07 000000012 INF: X=-1  Z correction [um]=-0.008270801
17-03-17 20:02:59.808 -07 000000012 INF: Autofocus finished
17-03-17 20:02:59.808 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:02:59.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 15 ms overall
17-03-17 20:02:59.818 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:00.018 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:00.018 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:03:00.018 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137418180520361. ----------
17-03-17 20:03:00.018 -07 000000610 INF: Cycle	33	Tile	12	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:00.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28526, sync = True, waitForSettling = True)
17-03-17 20:03:00.028 -07 000000610 INF: Z Motor: Moving to -0.130584 mm, started at -0.137418 mm, distance = 6.83 um
17-03-17 20:03:00.028 -07 000000610 INF: FPGA: Xmit ZDACW 28526\n [Z Motor]
17-03-17 20:03:00.028 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:03:00.038 -07 000000610 INF: FPGA: 'ZDACW 28526' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:00.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:00.038 -07 000000431 INF: FPGA: Recv ZDACR 28526
17-03-17 20:03:00.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.198 -07 000000012 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:03:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.208 -07 000000012 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:03:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.218 -07 000000012 INF: FPGA: Recv ZSGSRD 29610
17-03-17 20:03:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:03:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.238 -07 000000012 INF: FPGA: Recv ZSGSRD 29615
17-03-17 20:03:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29621
17-03-17 20:03:00.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:03:00.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.268 -07 000000012 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:03:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29623
17-03-17 20:03:00.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:00.288 -07 000000462 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:03:00.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:00.298 -07 000000012 INF: FPGA: Recv ZPIEZORD 25312
17-03-17 20:03:00.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:00.308 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.5 V.
17-03-17 20:03:00.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29617 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29610 (-129.8 uncal um), Max = 29623 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:03:00.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29617, posNoise = 6, negNoise = 7
17-03-17 20:03:00.308 -07 000000610 INF: Z Motor: After move to -0.130584, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:00.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:03:00.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:00.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:00.308 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:00.308 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:00.308 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:00.308 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:00.308 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:00.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:00.308 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:00.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:00.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:03:00.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:00.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:00.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:00.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:03:00.318 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:00.318 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:03:00.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:03:00.328 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:03:00.328 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:00.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28703 150\n [Camera]
17-03-17 20:03:00.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:00.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:00.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:00.938 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:00.938 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:00.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:03:00.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:00.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:00.938 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:00.938 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:00.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:03:01.128 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28703 793
17-03-17 20:03:01.278 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:01.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:03:01.318 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:03:01.318 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:01.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:03:01.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:03:01.318 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:01.318 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:01.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:01.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:03:01.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:03:01.478 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:01.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:01.478 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:01.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:01.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:01.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:01.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:01.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:03:01.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:01.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:03:01.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:03:01.668 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:01.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28703 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:03:01.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:01.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130589243013669. ------
17-03-17 20:03:01.668 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:01.668 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13700 mm
17-03-17 20:03:01.668 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:01.668 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:03:01.668 -07 000000459 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:03:01.668 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:01.678 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:01.678 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:01.678 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29927, sync = True, waitForSettling = False)
17-03-17 20:03:01.678 -07 000000486 INF: Z Motor: Moving to -0.136997 mm, started at -0.130589 mm, distance = -6.41 um
17-03-17 20:03:01.678 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:03:01.688 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:01.688 -07 000000459 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:01.688 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:01.688 -07 000000459 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:01.688 -07 000000459 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:03:01.698 -07 000000486 INF: FPGA: Xmit ZDACW 29927\n [Z Motor]
17-03-17 20:03:01.698 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:03:01.708 -07 000000486 INF: FPGA: 'ZDACW 29927' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:01.708 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:01.718 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:01.718 -07 000000547 INF: FPGA: Recv ZDACR 29927
17-03-17 20:03:01.728 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:03:01.728 -07 000000486 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:03:01.748 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:01.888 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:01.888 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:03:01.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:03:01.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:03:01.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:01.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:03:01.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:03:01.988 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:01.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:01.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:01.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:03:01.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:03:02.078 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:03:02.078 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:03:02.118 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:02.118 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:03:02.128 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:02.128 -07 000000459 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:02.128 -07 000000459 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:03:02.128 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-17 20:03:03.078 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:03.078 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:03:03.088 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:03.088 -07 000000459 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:03.108 -07 000000459 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:03.108 -07 000000459 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:03:03.108 -07 000000459 INF: Y Motor: Moved to 69.8638 after 1432 ms (table move)
17-03-17 20:03:03.108 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136997 mm (DAC = 29927)
17-03-17 20:03:03.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.108 -07 000000593 INF: FPGA: Recv ZSGSRD 30619
17-03-17 20:03:03.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:03.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.118 -07 000000415 INF: FPGA: Recv ZSGSRD 30608
17-03-17 20:03:03.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30614
17-03-17 20:03:03.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.138 -07 000000593 INF: FPGA: Recv ZSGSRD 30618
17-03-17 20:03:03.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30625
17-03-17 20:03:03.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30617
17-03-17 20:03:03.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30609
17-03-17 20:03:03.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.178 -07 000000462 INF: FPGA: Recv ZSGSRD 30614
17-03-17 20:03:03.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.188 -07 000000547 INF: FPGA: Recv ZSGSRD 30615
17-03-17 20:03:03.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:03.198 -07 000000593 INF: FPGA: Recv ZSGSRD 30619
17-03-17 20:03:03.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.208 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:03.208 -07 000000551 INF: FPGA: Recv ZPIEZORD 26624
17-03-17 20:03:03.218 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -8.8 V.
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30616 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30616 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30608 (-136.2 uncal um), Max = 30625 (-136.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30616, posNoise = 9, negNoise = 8
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: After move to -0.136997, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:03:03.218 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:03.268 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:03:03.268 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:03.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:03.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:03.268 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:03.268 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:03.278 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:03.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:03.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:03.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:03.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:03:03.278 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:03.288 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:03:03.288 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:03:03.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:03.338 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:03.538 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:03.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:03.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:03.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:03:03.578 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:03.578 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:03.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 20:03:03.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:03:03.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:03.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:03:03.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:03:03.678 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:03.678 -07 000000501 INF: Autofocus start
17-03-17 20:03:03.678 -07 000000501 INF: MeasureProfile start
17-03-17 20:03:03.688 -07 000000501 INF: MeasureProfile done
17-03-17 20:03:03.688 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:03:03.688 -07 000000501 INF: Autofocus finished
17-03-17 20:03:03.688 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:03.688 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-17 20:03:03.688 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:03.898 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:03.898 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 203 ms overall
17-03-17 20:03:03.898 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.137007030943288. ----------
17-03-17 20:03:03.898 -07 000000610 INF: Cycle	33	Tile	13	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:03.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28451, sync = True, waitForSettling = True)
17-03-17 20:03:03.898 -07 000000610 INF: Z Motor: Moving to -0.130240 mm, started at -0.137007 mm, distance = 6.77 um
17-03-17 20:03:03.898 -07 000000610 INF: FPGA: Xmit ZDACW 28451\n [Z Motor]
17-03-17 20:03:03.908 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:03:03.918 -07 000000610 INF: FPGA: 'ZDACW 28451' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:03.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:03.918 -07 000000551 INF: FPGA: Recv ZDACR 28451
17-03-17 20:03:03.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:03.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:04.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.078 -07 000000551 INF: FPGA: Recv ZSGSRD 29564
17-03-17 20:03:04.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:04.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.088 -07 000000501 INF: FPGA: Recv ZSGSRD 29567
17-03-17 20:03:04.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29567
17-03-17 20:03:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29569
17-03-17 20:03:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29566
17-03-17 20:03:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29563
17-03-17 20:03:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.138 -07 000000551 INF: FPGA: Recv ZSGSRD 29562
17-03-17 20:03:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.148 -07 000000626 INF: FPGA: Recv ZSGSRD 29562
17-03-17 20:03:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.158 -07 000000501 INF: FPGA: Recv ZSGSRD 29562
17-03-17 20:03:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:04.168 -07 000000626 INF: FPGA: Recv ZSGSRD 29566
17-03-17 20:03:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:04.178 -07 000000501 INF: FPGA: Recv ZPIEZORD 25288
17-03-17 20:03:04.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:04.188 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.4 V.
17-03-17 20:03:04.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29565 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29565 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29562 (-129.5 uncal um), Max = 29569 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:03:04.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29565, posNoise = 4, negNoise = 3
17-03-17 20:03:04.188 -07 000000610 INF: Z Motor: After move to -0.130240, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:04.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:03:04.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:04.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:04.188 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:04.188 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:04.188 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:04.188 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:04.188 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:04.188 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:04.188 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:04.188 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:04.188 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:03:04.188 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:04.198 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:03:04.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:03:04.198 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:04.198 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:04.208 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:03:04.208 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:03:04.208 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:03:04.208 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:03:04.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28628 150\n [Camera]
17-03-17 20:03:04.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:04.548 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.981281,
17-03-17 20:03:04.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:04.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:04.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:04.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:04.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:03:04.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:04.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:04.818 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:04.818 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:04.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:03:05.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28628 793
17-03-17 20:03:05.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:05.198 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:03:05.198 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:03:05.198 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:05.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:03:05.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:03:05.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:05.198 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:05.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:05.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:03:05.208 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:03:05.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:05.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:05.358 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:05.468 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:05.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:05.468 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:05.468 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:05.468 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:05.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:03:05.468 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:03:05.548 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:03:05.548 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:05.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28628 150' command took 2 ms to send, 1335 ms to get response, and 1342 ms overall
17-03-17 20:03:05.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:05.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130255183982298. ------
17-03-17 20:03:05.558 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:05.558 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13664 mm
17-03-17 20:03:05.558 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:05.558 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:05.558 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:03:05.558 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:03:05.558 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29850, sync = True, waitForSettling = False)
17-03-17 20:03:05.558 -07 000000608 INF: Z Motor: Moving to -0.136645 mm, started at -0.130255 mm, distance = -6.39 um
17-03-17 20:03:05.568 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:05.568 -07 000000608 INF: FPGA: Xmit ZDACW 29850\n [Z Motor]
17-03-17 20:03:05.568 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:03:05.578 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:05.578 -07 000000608 INF: FPGA: 'ZDACW 29850' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:03:05.578 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:03:05.588 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:05.588 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:03:05.588 -07 000000626 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:05.588 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:05.588 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:03:05.598 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:05.598 -07 000000459 INF: FPGA: Recv ZDACR 29850
17-03-17 20:03:05.608 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:05.608 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:05.608 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:03:05.788 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:05.788 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:03:05.848 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:03:05.848 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:03:05.848 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:05.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:03:05.848 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:03:05.848 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:05.858 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:05.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:05.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:03:05.868 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:03:05.978 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:03:05.978 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:03:06.018 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:06.738 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:03:06.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 710 ms to get response, and 715 ms overall
17-03-17 20:03:06.738 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:06.738 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:03:06.738 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 20:03:06.748 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:07.688 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:07.688 -07 000000593 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:03:07.698 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:07.698 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:07.718 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:07.718 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:03:07.718 -07 000000626 INF: Y Motor: Moved to 70.6890 after 2155 ms (table move)
17-03-17 20:03:07.718 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136645 mm (DAC = 29850)
17-03-17 20:03:07.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30563
17-03-17 20:03:07.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:07.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.728 -07 000000459 INF: FPGA: Recv ZSGSRD 30553
17-03-17 20:03:07.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30565
17-03-17 20:03:07.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.748 -07 000000551 INF: FPGA: Recv ZSGSRD 30563
17-03-17 20:03:07.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.758 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30564
17-03-17 20:03:07.768 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.768 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.768 -07 000000626 INF: FPGA: Recv ZSGSRD 30563
17-03-17 20:03:07.778 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.778 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30558
17-03-17 20:03:07.788 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.788 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.788 -07 000000626 INF: FPGA: Recv ZSGSRD 30565
17-03-17 20:03:07.798 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.798 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30559
17-03-17 20:03:07.808 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.808 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:07.808 -07 000000551 INF: FPGA: Recv ZSGSRD 30558
17-03-17 20:03:07.818 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.818 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:07.818 -07 000000593 INF: FPGA: Recv ZPIEZORD 26601
17-03-17 20:03:07.828 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.7 V.
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30561 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30563 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30553 (-135.8 uncal um), Max = 30565 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30561, posNoise = 4, negNoise = 8
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: After move to -0.136645, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: Settle wait time = 2159 ms, measure time = 105 ms (allowed 150 ms), total time = 2264 ms
17-03-17 20:03:07.828 -07 000000482 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:07.878 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2317 ms
17-03-17 20:03:07.878 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:07.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:07.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:07.878 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:07.878 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:07.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:07.878 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:07.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:03:07.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:07.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:07.888 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:07.888 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:03:07.888 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:03:07.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:07.938 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:08.138 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:08.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:08.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:08.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:03:08.178 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:08.178 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:08.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:03:08.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:03:08.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:08.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:03:08.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:03:08.278 -07 000000551 INF: Autofocus start
17-03-17 20:03:08.278 -07 000000551 INF: MeasureProfile start
17-03-17 20:03:08.278 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:08.278 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:08.288 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:08.288 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:08.288 -07 000000551 INF: MeasureProfile done
17-03-17 20:03:08.288 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:03:08.288 -07 000000551 INF: Autofocus finished
17-03-17 20:03:08.488 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:08.488 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:08.488 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136653699275492. ----------
17-03-17 20:03:08.488 -07 000000610 INF: Cycle	33	Tile	14	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:08.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28357, sync = True, waitForSettling = True)
17-03-17 20:03:08.498 -07 000000610 INF: Z Motor: Moving to -0.129810 mm, started at -0.136654 mm, distance = 6.84 um
17-03-17 20:03:08.498 -07 000000610 INF: FPGA: Xmit ZDACW 28357\n [Z Motor]
17-03-17 20:03:08.498 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:03:08.508 -07 000000610 INF: FPGA: 'ZDACW 28357' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:03:08.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:08.508 -07 000000593 INF: FPGA: Recv ZDACR 28357
17-03-17 20:03:08.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.668 -07 000000626 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:03:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.678 -07 000000551 INF: FPGA: Recv ZSGSRD 29495
17-03-17 20:03:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29500
17-03-17 20:03:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.698 -07 000000626 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:03:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.708 -07 000000482 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:03:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29499
17-03-17 20:03:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.728 -07 000000593 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:03:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.738 -07 000000626 INF: FPGA: Recv ZSGSRD 29502
17-03-17 20:03:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.748 -07 000000593 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:03:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:08.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:03:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:08.768 -07 000000482 INF: FPGA: Recv ZPIEZORD 25201
17-03-17 20:03:08.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:08.778 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.4 V.
17-03-17 20:03:08.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29497 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29497 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29494 (-129.0 uncal um), Max = 29502 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:03:08.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29497, posNoise = 5, negNoise = 3
17-03-17 20:03:08.778 -07 000000610 INF: Z Motor: After move to -0.129810, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:08.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:03:08.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:08.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:08.778 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:08.778 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:08.778 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:08.778 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:08.778 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:08.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:08.778 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:08.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:08.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:03:08.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:08.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:08.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:08.788 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:03:08.788 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:08.798 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:03:08.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:08.798 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:03:08.798 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:03:08.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28534 150\n [Camera]
17-03-17 20:03:08.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:09.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:09.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:09.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:09.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:09.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:03:09.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:09.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:09.408 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:09.408 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:09.408 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:03:09.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28534 793
17-03-17 20:03:09.748 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:03:09.788 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:03:09.788 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:03:09.788 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:09.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:09.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:03:09.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:03:09.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:09.798 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:03:09.798 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:09.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:03:09.908 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.960826,
17-03-17 20:03:09.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:09.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:09.948 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:10.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:10.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:10.058 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:10.058 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:10.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) start.
17-03-17 20:03:10.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:10.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:03:10.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:03:10.138 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:10.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28534 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:03:10.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:10.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129818337556658. ------
17-03-17 20:03:10.138 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:10.138 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13654 mm
17-03-17 20:03:10.138 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:10.148 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:10.148 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29827, sync = True, waitForSettling = False)
17-03-17 20:03:10.148 -07 000000431 INF: Z Motor: Moving to -0.136539 mm, started at -0.129818 mm, distance = -6.72 um
17-03-17 20:03:10.148 -07 000000431 INF: FPGA: Xmit ZDACW 29827\n [Z Motor]
17-03-17 20:03:10.148 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:10.148 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:03:10.148 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:03:10.148 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:03:10.158 -07 000000431 INF: FPGA: 'ZDACW 29827' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:10.158 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:10.168 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:10.168 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:03:10.178 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:03:10.178 -07 000000608 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:10.178 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:10.178 -07 000000608 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:03:10.178 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:10.178 -07 000000478 INF: FPGA: Recv ZDACR 29827
17-03-17 20:03:10.188 -07 000000431 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:10.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:03:10.188 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:10.358 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:10.358 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 20:03:10.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089146016, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:03:10.458 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:03:10.458 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:10.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:03:10.458 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:03:10.458 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:10.468 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:10.468 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:10.468 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 20:03:10.468 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:03:10.558 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 20:03:10.558 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:03:10.598 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:10.598 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:03:10.608 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:10.608 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:10.608 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:03:10.608 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 20:03:11.558 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:11.558 -07 000000482 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:03:11.568 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:11.568 -07 000000608 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:11.588 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:11.588 -07 000000608 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:03:11.588 -07 000000608 INF: Y Motor: Moved to 71.5195 after 1440 ms (table move)
17-03-17 20:03:11.588 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136539 mm (DAC = 29827)
17-03-17 20:03:11.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30546
17-03-17 20:03:11.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:03:11.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.598 -07 000000478 INF: FPGA: Recv ZSGSRD 30540
17-03-17 20:03:11.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:11.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.608 -07 000000593 INF: FPGA: Recv ZSGSRD 30549
17-03-17 20:03:11.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.618 -07 000000608 INF: FPGA: Recv ZSGSRD 30541
17-03-17 20:03:11.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.628 -07 000000547 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:03:11.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.638 -07 000000547 INF: FPGA: Recv ZSGSRD 30552
17-03-17 20:03:11.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.648 -07 000000431 INF: FPGA: Recv ZSGSRD 30545
17-03-17 20:03:11.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.658 -07 000000431 INF: FPGA: Recv ZSGSRD 30538
17-03-17 20:03:11.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.668 -07 000000431 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:03:11.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:11.678 -07 000000486 INF: FPGA: Recv ZSGSRD 30544
17-03-17 20:03:11.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.688 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:11.688 -07 000000486 INF: FPGA: Recv ZPIEZORD 26597
17-03-17 20:03:11.698 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -8.7 V.
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30544 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30544 (-135.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30535 (-135.7 uncal um), Max = 30552 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30544, posNoise = 8, negNoise = 9
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: After move to -0.136539, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: Settle wait time = 1446 ms, measure time = 104 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:03:11.698 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:11.748 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:03:11.748 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:11.748 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:11.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:11.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:11.748 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:11.748 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:11.758 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:11.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:11.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:11.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:11.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:11.758 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:11.768 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:03:11.768 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:03:11.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:11.808 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:12.008 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:12.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:12.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:12.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:03:12.048 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:12.048 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:12.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:03:12.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:03:12.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:12.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:03:12.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:03:12.148 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:12.148 -07 000000431 INF: Autofocus start
17-03-17 20:03:12.148 -07 000000431 INF: MeasureProfile start
17-03-17 20:03:12.148 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:12.158 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:12.158 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:12.168 -07 000000431 INF: MeasureProfile done
17-03-17 20:03:12.168 -07 000000431 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 20:03:12.168 -07 000000431 INF: Autofocus finished
17-03-17 20:03:12.358 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:12.358 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:12.358 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136544487669082. ----------
17-03-17 20:03:12.358 -07 000000610 INF: Cycle	33	Tile	15	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:12.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28304, sync = True, waitForSettling = True)
17-03-17 20:03:12.368 -07 000000610 INF: Z Motor: Moving to -0.129567 mm, started at -0.136544 mm, distance = 6.98 um
17-03-17 20:03:12.368 -07 000000610 INF: FPGA: Xmit ZDACW 28304\n [Z Motor]
17-03-17 20:03:12.368 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:03:12.378 -07 000000610 INF: FPGA: 'ZDACW 28304' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:12.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:12.378 -07 000000486 INF: FPGA: Recv ZDACR 28304
17-03-17 20:03:12.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.538 -07 000000547 INF: FPGA: Recv ZSGSRD 29458
17-03-17 20:03:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:03:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29464
17-03-17 20:03:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29460
17-03-17 20:03:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:03:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29459
17-03-17 20:03:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.598 -07 000000486 INF: FPGA: Recv ZSGSRD 29457
17-03-17 20:03:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.608 -07 000000415 INF: FPGA: Recv ZSGSRD 29472
17-03-17 20:03:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.618 -07 000000626 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:03:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:12.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:03:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:12.638 -07 000000547 INF: FPGA: Recv ZPIEZORD 25157
17-03-17 20:03:12.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:12.648 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.4 V.
17-03-17 20:03:12.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29455 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:03:12.648 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 13, negNoise = 4
17-03-17 20:03:12.648 -07 000000610 INF: Z Motor: After move to -0.129567, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:12.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:03:12.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:12.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:12.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:12.648 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:12.648 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:12.648 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:12.648 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:03:12.648 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:12.648 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:12.648 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:12.658 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:03:12.658 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:12.658 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:12.658 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:12.658 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:03:12.658 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:12.668 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:03:12.668 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:03:12.668 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:03:12.668 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:12.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28481 150\n [Camera]
17-03-17 20:03:12.868 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:13.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:13.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:13.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:13.278 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:13.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 20:03:13.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:13.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:13.278 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:13.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:13.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:03:13.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 793
17-03-17 20:03:13.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:13.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:03:13.678 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:03:13.778 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:13.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 500 ms.
17-03-17 20:03:13.778 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 20:03:13.778 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:13.788 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:13.788 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:03:13.788 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:13.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 20:03:13.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:13.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:13.818 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:13.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:13.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:13.818 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:13.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:13.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:03:13.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:13.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) start.
17-03-17 20:03:14.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:03:14.008 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:14.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28481 150' command took 2 ms to send, 1332 ms to get response, and 1338 ms overall
17-03-17 20:03:14.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:14.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129574217495271. ------
17-03-17 20:03:14.008 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:14.008 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13551 mm
17-03-17 20:03:14.008 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:14.018 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:14.018 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 20:03:14.018 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:14.018 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:03:14.018 -07 000000431 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:03:14.018 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29602, sync = True, waitForSettling = False)
17-03-17 20:03:14.018 -07 000000626 INF: Z Motor: Moving to -0.135509 mm, started at -0.129574 mm, distance = -5.94 um
17-03-17 20:03:14.028 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:14.028 -07 000000415 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:03:14.038 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:03:14.038 -07 000000431 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:14.038 -07 000000431 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:14.038 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:03:14.038 -07 000000626 INF: FPGA: Xmit ZDACW 29602\n [Z Motor]
17-03-17 20:03:14.038 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:03:14.048 -07 000000626 INF: FPGA: 'ZDACW 29602' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:03:14.048 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:14.058 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:14.058 -07 000000482 INF: FPGA: Recv ZDACR 29602
17-03-17 20:03:14.068 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:03:14.068 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:03:14.218 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:03:14.218 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:03:14.218 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:14.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1089146016, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:03:14.218 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:03:14.218 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:14.218 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:14.218 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 20:03:14.228 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:14.228 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:14.228 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:03:14.228 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:03:14.428 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:03:14.428 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 20:03:14.458 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:14.458 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:03:14.468 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:14.468 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:14.468 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:03:14.468 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 20:03:15.268 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 3.978563,
17-03-17 20:03:15.418 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:15.418 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:03:15.428 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:15.428 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:15.448 -07 000000431 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:15.448 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:03:15.448 -07 000000431 INF: Y Motor: Moved to 72.3496 after 1428 ms (table move)
17-03-17 20:03:15.448 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135509 mm (DAC = 29602)
17-03-17 20:03:15.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30394
17-03-17 20:03:15.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:15.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.458 -07 000000501 INF: FPGA: Recv ZSGSRD 30384
17-03-17 20:03:15.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.468 -07 000000459 INF: FPGA: Recv ZSGSRD 30385
17-03-17 20:03:15.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.478 -07 000000501 INF: FPGA: Recv ZSGSRD 30378
17-03-17 20:03:15.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.488 -07 000000626 INF: FPGA: Recv ZSGSRD 30384
17-03-17 20:03:15.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.498 -07 000000459 INF: FPGA: Recv ZSGSRD 30384
17-03-17 20:03:15.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.508 -07 000000626 INF: FPGA: Recv ZSGSRD 30391
17-03-17 20:03:15.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.518 -07 000000459 INF: FPGA: Recv ZSGSRD 30387
17-03-17 20:03:15.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:03:15.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:15.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30389
17-03-17 20:03:15.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.548 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:15.548 -07 000000501 INF: FPGA: Recv ZPIEZORD 26344
17-03-17 20:03:15.558 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.9 V.
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30384 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30378 (-134.7 uncal um), Max = 30394 (-134.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 8, negNoise = 8
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: After move to -0.135509, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:03:15.558 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:15.608 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:03:15.608 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:15.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:15.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:15.608 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:15.608 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:15.608 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:15.608 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:15.608 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:15.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:15.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:15.618 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:15.628 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:03:15.628 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:03:15.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:15.678 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:15.878 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:15.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:15.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:15.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:03:15.908 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:15.918 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:15.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:03:15.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:03:15.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:15.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:03:15.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:03:16.018 -07 000000547 INF: Autofocus start
17-03-17 20:03:16.018 -07 000000547 INF: MeasureProfile start
17-03-17 20:03:16.018 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:16.018 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:16.028 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:16.028 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:16.028 -07 000000547 INF: MeasureProfile done
17-03-17 20:03:16.028 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:03:16.028 -07 000000547 INF: Autofocus finished
17-03-17 20:03:16.228 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:16.228 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:16.228 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135529462150683. ----------
17-03-17 20:03:16.228 -07 000000610 INF: Cycle	33	Tile	16	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:16.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28109, sync = True, waitForSettling = True)
17-03-17 20:03:16.238 -07 000000610 INF: Z Motor: Moving to -0.128675 mm, started at -0.135529 mm, distance = 6.85 um
17-03-17 20:03:16.238 -07 000000610 INF: FPGA: Xmit ZDACW 28109\n [Z Motor]
17-03-17 20:03:16.238 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:03:16.248 -07 000000610 INF: FPGA: 'ZDACW 28109' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:16.248 -07 000000448 INF: FPGA: Recv ZDACR 28109
17-03-17 20:03:16.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.408 -07 000000593 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:03:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29324
17-03-17 20:03:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.428 -07 000000547 INF: FPGA: Recv ZSGSRD 29320
17-03-17 20:03:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.438 -07 000000431 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:03:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.448 -07 000000431 INF: FPGA: Recv ZSGSRD 29324
17-03-17 20:03:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.458 -07 000000593 INF: FPGA: Recv ZSGSRD 29326
17-03-17 20:03:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29319
17-03-17 20:03:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.478 -07 000000448 INF: FPGA: Recv ZSGSRD 29322
17-03-17 20:03:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.488 -07 000000593 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:03:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:16.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29317
17-03-17 20:03:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:16.508 -07 000000593 INF: FPGA: Recv ZPIEZORD 24974
17-03-17 20:03:16.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:16.518 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 20:03:16.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29321 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29321 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29316 (-127.9 uncal um), Max = 29326 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:03:16.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29321, posNoise = 5, negNoise = 5
17-03-17 20:03:16.518 -07 000000610 INF: Z Motor: After move to -0.128675, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:16.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:03:16.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:16.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:16.518 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:16.518 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:16.518 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:16.518 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:16.518 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:16.518 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:16.518 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:16.518 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:16.518 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:03:16.518 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:16.518 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:03:16.528 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:16.528 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:03:16.528 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:16.528 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:03:16.528 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:16.538 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:03:16.538 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:03:16.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28286 150\n [Camera]
17-03-17 20:03:16.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:16.748 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:17.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:17.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:17.148 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:17.148 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:17.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:03:17.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:17.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:17.148 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:17.148 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:17.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:03:17.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28286 793
17-03-17 20:03:17.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:17.528 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:03:17.528 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:03:17.528 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:17.528 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:03:17.528 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:03:17.528 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:17.528 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:17.528 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:03:17.528 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:17.538 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:03:17.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:17.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:17.688 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:17.688 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:17.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:03:17.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:17.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:17.688 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:17.688 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:17.688 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:03:17.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:03:17.878 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:17.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28286 150' command took 2 ms to send, 1333 ms to get response, and 1339 ms overall
17-03-17 20:03:17.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:17.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128687676219708. ------
17-03-17 20:03:17.878 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:17.878 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13525 mm
17-03-17 20:03:17.878 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:17.888 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:03:17.888 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:03:17.888 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:17.888 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:17.888 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:03:17.888 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29545, sync = True, waitForSettling = False)
17-03-17 20:03:17.888 -07 000000501 INF: Z Motor: Moving to -0.135248 mm, started at -0.128688 mm, distance = -6.56 um
17-03-17 20:03:17.888 -07 000000480 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:03:17.898 -07 000000501 INF: FPGA: Xmit ZDACW 29545\n [Z Motor]
17-03-17 20:03:17.898 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:17.898 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:17.898 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:03:17.898 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:17.898 -07 000000547 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:03:17.908 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:17.908 -07 000000501 INF: FPGA: 'ZDACW 29545' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:03:17.918 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:17.928 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:17.928 -07 000000431 INF: FPGA: Recv ZDACR 29545
17-03-17 20:03:17.938 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:17.938 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:03:18.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:03:18.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:03:18.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:18.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:03:18.078 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:03:18.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:18.078 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:18.088 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:03:18.088 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:03:18.088 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:03:18.108 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:18.108 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 20:03:18.298 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:03:18.298 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 372 ms to get response, and 395 ms overall
17-03-17 20:03:18.328 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:18.338 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:03:18.338 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:18.338 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:18.338 -07 000000547 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:03:18.338 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.134 mm/sec
17-03-17 20:03:19.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:19.288 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:03:19.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:19.298 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:19.318 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:19.318 -07 000000547 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:03:19.318 -07 000000547 INF: Y Motor: Moved to 73.1763 after 1431 ms (table move)
17-03-17 20:03:19.318 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135248 mm (DAC = 29545)
17-03-17 20:03:19.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.318 -07 000000547 INF: FPGA: Recv ZSGSRD 30339
17-03-17 20:03:19.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:19.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.328 -07 000000551 INF: FPGA: Recv ZSGSRD 30347
17-03-17 20:03:19.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.338 -07 000000551 INF: FPGA: Recv ZSGSRD 30343
17-03-17 20:03:19.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30354
17-03-17 20:03:19.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30348
17-03-17 20:03:19.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30340
17-03-17 20:03:19.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.378 -07 000000551 INF: FPGA: Recv ZSGSRD 30342
17-03-17 20:03:19.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30339
17-03-17 20:03:19.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.398 -07 000000593 INF: FPGA: Recv ZSGSRD 30344
17-03-17 20:03:19.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:19.408 -07 000000593 INF: FPGA: Recv ZSGSRD 30348
17-03-17 20:03:19.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.418 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:19.418 -07 000000480 INF: FPGA: Recv ZPIEZORD 26346
17-03-17 20:03:19.428 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.8 V.
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30344 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30344 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30339 (-134.4 uncal um), Max = 30354 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30344, posNoise = 10, negNoise = 5
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: After move to -0.135248, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:03:19.428 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:19.478 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:03:19.478 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:19.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:19.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:19.478 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:19.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:19.478 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:19.478 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:19.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:03:19.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:19.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:19.488 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:19.488 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:03:19.488 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:03:19.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:19.538 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:19.738 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:19.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:19.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:19.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 20:03:19.778 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:19.778 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:19.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:03:19.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:03:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:03:19.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:03:19.878 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:19.878 -07 000000478 INF: Autofocus start
17-03-17 20:03:19.878 -07 000000478 INF: MeasureProfile start
17-03-17 20:03:19.878 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:19.888 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:19.888 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:19.898 -07 000000478 INF: MeasureProfile done
17-03-17 20:03:19.898 -07 000000478 INF: X=15  Z correction [um]=0.04820751
17-03-17 20:03:19.898 -07 000000478 INF: Autofocus finished
17-03-17 20:03:20.088 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:20.088 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:20.088 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.13525964524073. ----------
17-03-17 20:03:20.088 -07 000000610 INF: Cycle	33	Tile	17	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:20.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28068, sync = True, waitForSettling = True)
17-03-17 20:03:20.098 -07 000000610 INF: Z Motor: Moving to -0.128487 mm, started at -0.135260 mm, distance = 6.77 um
17-03-17 20:03:20.098 -07 000000610 INF: FPGA: Xmit ZDACW 28068\n [Z Motor]
17-03-17 20:03:20.098 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:03:20.108 -07 000000610 INF: FPGA: 'ZDACW 28068' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:20.108 -07 000000431 INF: FPGA: Recv ZDACR 28068
17-03-17 20:03:20.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:03:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.278 -07 000000593 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:03:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29290
17-03-17 20:03:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29288
17-03-17 20:03:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.318 -07 000000593 INF: FPGA: Recv ZSGSRD 29292
17-03-17 20:03:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:03:20.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.328 -07 000000593 INF: FPGA: Recv ZSGSRD 29292
17-03-17 20:03:20.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.338 -07 000000415 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:03:20.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29286
17-03-17 20:03:20.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.358 -07 000000478 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:03:20.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:20.368 -07 000000431 INF: FPGA: Recv ZSGSRD 29289
17-03-17 20:03:20.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:20.378 -07 000000478 INF: FPGA: Recv ZPIEZORD 24947
17-03-17 20:03:20.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:20.388 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.5 V.
17-03-17 20:03:20.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29290 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29291 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29286 (-127.7 uncal um), Max = 29292 (-127.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:03:20.388 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29290, posNoise = 2, negNoise = 4
17-03-17 20:03:20.388 -07 000000610 INF: Z Motor: After move to -0.128487, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:20.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 20:03:20.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:20.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:20.388 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:20.388 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:20.388 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:20.388 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:20.388 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:20.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:20.388 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:20.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:20.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:03:20.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:20.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:03:20.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:20.398 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:03:20.398 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:20.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:03:20.398 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:20.408 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:03:20.408 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:03:20.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28245 150\n [Camera]
17-03-17 20:03:20.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:20.628 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.001704,
17-03-17 20:03:21.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:21.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:21.018 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:21.018 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:21.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:03:21.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:21.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:21.018 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:21.018 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:21.018 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:03:21.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28245 793
17-03-17 20:03:21.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:21.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:03:21.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:03:21.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:21.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:03:21.408 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:03:21.408 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:21.408 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:21.408 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:03:21.408 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:03:21.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:03:21.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:21.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:21.558 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:21.558 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:21.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:03:21.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:21.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:21.558 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:21.558 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:21.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:03:21.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:21.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:03:21.748 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:21.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28245 150' command took 2 ms to send, 1334 ms to get response, and 1340 ms overall
17-03-17 20:03:21.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:21.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128488525643313. ------
17-03-17 20:03:21.758 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13485 mm
17-03-17 20:03:21.758 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:21.758 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:21.758 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:03:21.758 -07 000000486 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:03:21.758 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29458, sync = True, waitForSettling = False)
17-03-17 20:03:21.758 -07 000000415 INF: Z Motor: Moving to -0.134850 mm, started at -0.128489 mm, distance = -6.36 um
17-03-17 20:03:21.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:21.768 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:03:21.768 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:21.768 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:03:21.778 -07 000000415 INF: FPGA: Xmit ZDACW 29458\n [Z Motor]
17-03-17 20:03:21.778 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:03:21.778 -07 000000486 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:21.778 -07 000000486 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:21.778 -07 000000486 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:03:21.778 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:03:21.788 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:21.788 -07 000000415 INF: FPGA: 'ZDACW 29458' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:03:21.798 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:21.808 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:21.808 -07 000000551 INF: FPGA: Recv ZDACR 29458
17-03-17 20:03:21.818 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:21.818 -07 000000415 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:03:21.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:03:21.958 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:03:21.958 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:21.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:03:21.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:03:21.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:21.968 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:21.968 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 20:03:21.968 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:03:21.968 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:03:21.988 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:21.988 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:03:22.168 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:03:22.168 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:03:22.198 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:22.208 -07 000000478 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:03:22.208 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:22.208 -07 000000486 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:22.208 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:03:22.208 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 20:03:23.158 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:23.158 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:03:23.168 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.168 -07 000000486 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:23.178 -07 000000486 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:23.178 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:03:23.178 -07 000000486 INF: Y Motor: Moved to 74.0083 after 1421 ms (table move)
17-03-17 20:03:23.178 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134850 mm (DAC = 29458)
17-03-17 20:03:23.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.188 -07 000000459 INF: FPGA: Recv ZSGSRD 30286
17-03-17 20:03:23.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:23.198 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.198 -07 000000431 INF: FPGA: Recv ZSGSRD 30281
17-03-17 20:03:23.208 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.208 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.208 -07 000000431 INF: FPGA: Recv ZSGSRD 30281
17-03-17 20:03:23.218 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.218 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.218 -07 000000431 INF: FPGA: Recv ZSGSRD 30280
17-03-17 20:03:23.228 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.228 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.228 -07 000000608 INF: FPGA: Recv ZSGSRD 30285
17-03-17 20:03:23.238 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.238 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30285
17-03-17 20:03:23.248 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.248 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30278
17-03-17 20:03:23.258 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.258 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.258 -07 000000608 INF: FPGA: Recv ZSGSRD 30276
17-03-17 20:03:23.268 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30280
17-03-17 20:03:23.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:23.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30285
17-03-17 20:03:23.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.288 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:23.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 26222
17-03-17 20:03:23.298 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -8.9 V.
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30282 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30281 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30286 (-134.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30282, posNoise = 4, negNoise = 6
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: After move to -0.134850, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: Settle wait time = 1424 ms, measure time = 111 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:03:23.298 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:23.338 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 20:03:23.338 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:23.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:23.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:23.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:23.338 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:23.338 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:23.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:23.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:03:23.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:23.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:23.348 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:23.358 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:03:23.358 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:03:23.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:23.408 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:23.608 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:23.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:23.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:23.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 20:03:23.648 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:03:23.648 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:23.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:03:23.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:03:23.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:23.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:03:23.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:03:23.748 -07 000000486 INF: Autofocus start
17-03-17 20:03:23.748 -07 000000486 INF: MeasureProfile start
17-03-17 20:03:23.748 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:23.748 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:23.758 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:23.758 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:23.758 -07 000000486 INF: MeasureProfile done
17-03-17 20:03:23.758 -07 000000486 INF: X=-14  Z correction [um]=-0.07155244
17-03-17 20:03:23.758 -07 000000486 INF: Autofocus finished
17-03-17 20:03:23.958 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:23.958 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:23.958 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13486134408794. ----------
17-03-17 20:03:23.958 -07 000000610 INF: Cycle	33	Tile	18	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:23.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27955, sync = True, waitForSettling = True)
17-03-17 20:03:23.968 -07 000000610 INF: Z Motor: Moving to -0.127970 mm, started at -0.134861 mm, distance = 6.89 um
17-03-17 20:03:23.968 -07 000000610 INF: FPGA: Xmit ZDACW 27955\n [Z Motor]
17-03-17 20:03:23.968 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:03:23.978 -07 000000610 INF: FPGA: 'ZDACW 27955' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:03:23.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:23.978 -07 000000486 INF: FPGA: Recv ZDACR 27955
17-03-17 20:03:23.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:23.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.138 -07 000000593 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:03:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.148 -07 000000593 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:03:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:03:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.168 -07 000000486 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:03:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.178 -07 000000486 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:03:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.188 -07 000000608 INF: FPGA: Recv ZSGSRD 29207
17-03-17 20:03:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.198 -07 000000608 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:03:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.208 -07 000000608 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:03:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:03:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:24.228 -07 000000431 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:03:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:24.238 -07 000000626 INF: FPGA: Recv ZPIEZORD 24868
17-03-17 20:03:24.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:24.248 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.5 V.
17-03-17 20:03:24.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29209 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29209 (-127.2 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 29207 (-127.2 uncal um), Max = 29210 (-127.2 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:03:24.248 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29209, posNoise = 1, negNoise = 2
17-03-17 20:03:24.248 -07 000000610 INF: Z Motor: After move to -0.127970, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:24.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:03:24.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:24.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:24.248 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:24.248 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:24.248 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:24.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:24.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:24.248 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:24.248 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:24.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:24.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:03:24.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:24.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:03:24.258 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:24.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:03:24.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:24.258 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:03:24.258 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:24.268 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:03:24.268 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:03:24.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28132 150\n [Camera]
17-03-17 20:03:24.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:24.878 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:24.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:24.878 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:24.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:24.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:03:24.878 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:24.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:24.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:24.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:24.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:03:25.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28132 793
17-03-17 20:03:25.218 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:25.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:03:25.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:03:25.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:25.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:03:25.258 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:03:25.258 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:25.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:25.268 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:25.268 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:03:25.268 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:03:25.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:25.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:25.418 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:25.418 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:25.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:03:25.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:25.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:25.418 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:25.418 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:25.418 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:03:25.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-17 20:03:25.608 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:25.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28132 150' command took 2 ms to send, 1333 ms to get response, and 1338 ms overall
17-03-17 20:03:25.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:03:25.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127968164459831. ------
17-03-17 20:03:25.608 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:25.608 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13434 mm
17-03-17 20:03:25.608 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:03:25.618 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:03:25.618 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:03:25.618 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:25.618 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 20:03:25.618 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:25.618 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29347, sync = True, waitForSettling = False)
17-03-17 20:03:25.618 -07 000000501 INF: Z Motor: Moving to -0.134342 mm, started at -0.127968 mm, distance = -6.37 um
17-03-17 20:03:25.618 -07 000000448 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:03:25.628 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:03:25.628 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:25.628 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:03:25.628 -07 000000547 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:03:25.628 -07 000000501 INF: FPGA: Xmit ZDACW 29347\n [Z Motor]
17-03-17 20:03:25.628 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:03:25.638 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:03:25.638 -07 000000501 INF: FPGA: 'ZDACW 29347' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:03:25.648 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:03:25.658 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:25.658 -07 000000462 INF: FPGA: Recv ZDACR 29347
17-03-17 20:03:25.668 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:03:25.668 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:03:25.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:03:25.808 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:03:25.808 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:25.808 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:03:25.808 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:03:25.808 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:25.808 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:25.808 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:03:25.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:03:25.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:03:25.838 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:03:25.838 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:03:25.988 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.004458,
17-03-17 20:03:26.018 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:03:26.018 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:03:26.048 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:26.048 -07 000000459 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:03:26.058 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:26.058 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:26.058 -07 000000547 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:03:26.058 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 20:03:26.748 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 32. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:27.008 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:27.008 -07 000000012 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:03:27.018 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:27.018 -07 000000547 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:27.028 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:27.028 -07 000000547 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:03:27.028 -07 000000547 INF: Y Motor: Moved to 74.8325 after 1412 ms (table move)
17-03-17 20:03:27.028 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134342 mm (DAC = 29347)
17-03-17 20:03:27.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.038 -07 000000448 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:03:27.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:03:27.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.038 -07 000000448 INF: FPGA: Recv ZSGSRD 30210
17-03-17 20:03:27.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:03:27.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.048 -07 000000551 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:03:27.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:27.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.058 -07 000000547 INF: FPGA: Recv ZSGSRD 30195
17-03-17 20:03:27.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:03:27.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.078 -07 000000462 INF: FPGA: Recv ZSGSRD 30203
17-03-17 20:03:27.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.088 -07 000000462 INF: FPGA: Recv ZSGSRD 30203
17-03-17 20:03:27.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:03:27.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.108 -07 000000501 INF: FPGA: Recv ZSGSRD 30209
17-03-17 20:03:27.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:03:27.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.128 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:27.128 -07 000000415 INF: FPGA: Recv ZPIEZORD 26161
17-03-17 20:03:27.138 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.9 V.
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30202 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30195 (-133.5 uncal um), Max = 30210 (-133.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30202, posNoise = 8, negNoise = 7
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: After move to -0.134342, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: Settle wait time = 1415 ms, measure time = 101 ms (allowed 150 ms), total time = 1516 ms
17-03-17 20:03:27.138 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:03:27.188 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 20:03:27.188 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:03:27.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:27.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:27.188 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:27.188 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:27.188 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:03:27.188 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:27.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:27.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:03:27.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:03:27.198 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:03:27.208 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:03:27.208 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:03:27.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:03:27.258 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:03:27.458 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:03:27.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:03:27.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:03:27.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:03:27.498 -07 000000459 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:03:27.498 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:03:27.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 20:03:27.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:03:27.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:27.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:03:27.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:03:27.598 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:03:27.598 -07 000000462 INF: Autofocus start
17-03-17 20:03:27.598 -07 000000462 INF: MeasureProfile start
17-03-17 20:03:27.598 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:03:27.608 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:03:27.608 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:03:27.608 -07 000000462 INF: MeasureProfile done
17-03-17 20:03:27.608 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:03:27.608 -07 000000462 INF: Autofocus finished
17-03-17 20:03:27.808 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:03:27.808 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:03:27.808 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134347407116599. ----------
17-03-17 20:03:27.808 -07 000000610 INF: Cycle	33	Tile	19	Exposure Settings		A	408	G	196	T	196	C	408
17-03-17 20:03:27.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27888, sync = True, waitForSettling = True)
17-03-17 20:03:27.818 -07 000000610 INF: Z Motor: Moving to -0.127663 mm, started at -0.134347 mm, distance = 6.68 um
17-03-17 20:03:27.818 -07 000000610 INF: FPGA: Xmit ZDACW 27888\n [Z Motor]
17-03-17 20:03:27.818 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:03:27.828 -07 000000610 INF: FPGA: 'ZDACW 27888' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:03:27.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:03:27.828 -07 000000012 INF: FPGA: Recv ZDACR 27888
17-03-17 20:03:27.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:03:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.988 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:03:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:27.998 -07 000000462 INF: FPGA: Recv ZSGSRD 29163
17-03-17 20:03:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.008 -07 000000482 INF: FPGA: Recv ZSGSRD 29164
17-03-17 20:03:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29164
17-03-17 20:03:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:03:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29166
17-03-17 20:03:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:03:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:03:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:03:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:03:28.078 -07 000000482 INF: FPGA: Recv ZSGSRD 29163
17-03-17 20:03:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:03:28.088 -07 000000462 INF: FPGA: Recv ZPIEZORD 24826
17-03-17 20:03:28.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:28.098 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.5 V.
17-03-17 20:03:28.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29162 (-126.9 uncal um), Max = 29166 (-126.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 20:03:28.098 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 3, negNoise = 1
17-03-17 20:03:28.098 -07 000000610 INF: Z Motor: After move to -0.127663, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:03:28.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:03:28.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:03:28.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:03:28.098 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:03:28.098 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:03:28.098 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:03:28.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:03:28.098 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:03:28.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:03:28.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:03:28.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:03:28.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:03:28.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:03:28.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:03:28.108 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:03:28.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:03:28.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:03:28.118 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:03:28.118 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:03:28.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:03:28.118 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:03:28.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 408 408 196 196 28065 150\n [Camera]
17-03-17 20:03:28.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:03:28.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 20:03:28.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 20:03:28.728 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:28.728 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:28.728 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:03:28.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 20:03:28.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 20:03:28.728 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:28.728 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:28.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:03:29.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:03:29.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:03:29.108 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:29.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:03:29.108 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:03:29.108 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:29.108 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:29.108 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:03:29.108 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:03:29.118 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:03:29.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28065 793
17-03-17 20:03:29.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-17 20:03:29.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1139
17-03-17 20:03:29.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1139
17-03-17 20:03:29.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:03:29.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1139
17-03-17 20:03:29.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1139
17-03-17 20:03:29.398 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:03:29.408 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:03:29.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:03:29.408 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:03:29.408 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:03:29.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1332
17-03-17 20:03:29.458 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:03:29.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 408 408 196 196 28065 150' command took 2 ms to send, 1332 ms to get response, and 1339 ms overall
17-03-17 20:03:29.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:03:29.798 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:03:29.798 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:29.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:03:29.798 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:03:29.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:03:29.798 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:29.808 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:03:29.808 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 20:03:29.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:03:29.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:03:29.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:03:29.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:03:29.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:03:29.908 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 20:03:29.908 -07 000000610 INF: Imaging Cycle 33: ScanTilesCommand Cycle 33 time end. Duration was 161892 ms.
17-03-17 20:03:29.908 -07 000000610 INF: =================== Cycle #33 ===================
17-03-17 20:03:29.908 -07 000000610 INF: ===================  ===================
17-03-17 20:03:29.908 -07 000000415 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:03:29.908 -07 000000608 INF: FPGA: Recv EXLED1ADCR 22
17-03-17 20:03:29.918 -07 000000415 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:03:29.918 -07 000000415 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-17 20:03:29.918 -07 000000415 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 33, FrontChillerTemperature: 4.004458, FrontChillerHeatSinkTemperature: 0.52587, AmbientTemperature: 18.90604, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.62478, GreenLEDSensorTemperature: 26.25439, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-17 20:03:29.938 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.