17-03-17 20:03:29.998 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:03:29.998 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:03:29.998 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:03:29.998 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:29.998 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:03:30.008 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:03:30.008 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:30.008 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:03:30.008 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:03:30.008 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:03:30.118 -07 000000608 INF: FPGA: Recv YMVTO 154378 871
17-03-17 20:03:30.118 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 20:03:30.118 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:03:30.118 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:03:30.118 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.684 mm/sec
17-03-17 20:03:31.348 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.000345,
17-03-17 20:03:31.748 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:03:31.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=446, R2=461, Total=907. Warn if over 250 bubbles per interval.
17-03-17 20:03:33.118 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:03:33.118 -07 000000415 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:03:33.128 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:03:33.128 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:03:33.138 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:03:33.138 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:03:33.138 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3141 ms
17-03-17 20:03:33.148 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 60° ===================
17-03-17 20:03:33.148 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:03:33.148 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:03:33.148 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:03:33.158 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:03:33.158 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:03:33.158 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 20:03:33.168 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:03:33.168 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 60° ===================
17-03-17 20:03:33.168 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:03:33.168 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:03:33.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:33.198 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:03:33.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:03:33.198 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:03:33.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:03:33.518 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:03:33.518 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:03:33.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:33.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:03:33.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:03:33.688 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:03:33.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:03:33.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:33.718 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:03:33.718 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:03:33.718 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:03:33.848 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:03:33.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:36.748 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 20:03:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=447, R2=461, Total=908. Warn if over 250 bubbles per interval.
17-03-17 20:03:37.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:37.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:37.048 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.009895,
17-03-17 20:03:37.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:37.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:37.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:37.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:37.948 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:03:37.948 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:03:38.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:38.108 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:03:38.108 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:03:38.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:38.268 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:03:38.268 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:03:38.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:03:38.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:03:38.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:38.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:38.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:38.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:03:38.888 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:03:40.108 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:03:40.108 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:03:40.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:40.128 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:03:40.128 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:03:40.128 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:03:40.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:03:40.288 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:03:40.288 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:03:40.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:40.358 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:03:40.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:03:40.458 -07 000000610 INF: =================== Cycle #34, Pumping Reagent CMS (4) ===================
17-03-17 20:03:40.458 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:03:40.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:40.488 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:03:40.488 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:03:40.488 -07 000000610 INF: =================== Cycle #34, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:03:40.618 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:03:40.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:41.748 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-17 20:03:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=450, R2=465, Total=915. Warn if over 250 bubbles per interval.
17-03-17 20:03:42.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:42.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:42.428 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.997626,
17-03-17 20:03:42.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:42.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:42.578 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:03:42.578 -07 000000610 INF: =================== Cycle #34, Pumping Reagent CMS (4) ===================
17-03-17 20:03:42.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:42.738 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:03:42.738 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:03:42.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:42.898 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:03:42.898 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:03:42.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:03:43.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:03:43.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:43.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:43.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:43.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:03:43.518 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:03:44.738 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:03:44.738 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:03:44.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:44.758 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:03:44.758 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:03:44.758 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:03:44.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:03:44.928 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:03:44.928 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:03:44.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:03:44.998 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:03:44.998 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:03:45.098 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:03:45.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:03:45.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:45.128 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:03:45.128 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:03:45.128 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:03:45.258 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:03:45.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:46.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:46.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:46.198 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:03:46.198 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:03:46.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:46.358 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:03:46.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:03:46.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:46.518 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:03:46.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:03:46.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:03:46.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:03:46.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:46.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-17 20:03:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=456, R2=469, Total=925. Warn if over 250 bubbles per interval.
17-03-17 20:03:47.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:47.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:47.138 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:03:47.138 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:03:47.138 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:03:47.138 -07 000000478 INF: WaitCommand(10000) start
17-03-17 20:03:47.138 -07 000000482 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:03:47.788 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.001704,
17-03-17 20:03:48.358 -07 000000482 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:03:48.358 -07 000000482 INF: LanePump: Xmit /1?\r
17-03-17 20:03:48.388 -07 000000482 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:03:48.388 -07 000000482 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:03:48.518 -07 000000482 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:03:48.558 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:50.088 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:50.118 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:50.538 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 20:03:50.568 -07 000000482 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:03:50.568 -07 000000482 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:03:50.568 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:03:50.568 -07 000000482 INF: ===================  ===================
17-03-17 20:03:51.748 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:03:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=456, R2=470, Total=926. Warn if over 250 bubbles per interval.
17-03-17 20:03:53.848 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.983999,
17-03-17 20:03:56.748 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:03:56.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=456, R2=471, Total=927. Warn if over 250 bubbles per interval.
17-03-17 20:03:57.148 -07 000000478 INF: WaitCommand(10000) end
17-03-17 20:03:57.148 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:03:57.148 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:03:57.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:03:57.188 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:03:57.188 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:03:57.188 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:03:57.318 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:03:57.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:03:59.208 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.007176,
17-03-17 20:04:01.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 20:04:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=457, R2=473, Total=930. Warn if over 250 bubbles per interval.
17-03-17 20:04:03.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:03.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:03.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:03.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:04.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:04.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:04.568 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.008536,
17-03-17 20:04:04.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:04.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:05.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:05.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:05.318 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:04:05.318 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:04:05.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:05.478 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:04:05.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:04:05.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:05.638 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:04:05.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:04:05.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:04:05.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:04:05.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:06.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:06.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:06.258 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:04:06.258 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:04:06.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 20:04:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=460, R2=476, Total=936. Warn if over 250 bubbles per interval.
17-03-17 20:04:07.478 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:04:07.478 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:04:07.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:04:07.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:04:07.498 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:04:07.498 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:04:07.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:04:07.728 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:04:07.728 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:04:07.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:04:07.798 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:04:07.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:04:07.898 -07 000000610 INF: =================== Cycle #34, Pumping Reagent IMT (1) ===================
17-03-17 20:04:07.898 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:04:07.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:07.928 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:04:07.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:04:07.928 -07 000000610 INF: =================== Cycle #34, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:04:08.058 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:04:08.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:09.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:09.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:09.928 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.999021,
17-03-17 20:04:09.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:10.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:10.018 -07 000000610 INF: LanePump: Waited 1918 ms for pump motion to complete
17-03-17 20:04:10.018 -07 000000610 INF: =================== Cycle #34, Pumping Reagent IMT (1) ===================
17-03-17 20:04:10.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:10.178 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:04:10.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:04:10.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:10.338 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:04:10.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:04:10.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:04:10.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:04:10.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:10.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:10.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:10.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:04:10.958 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:04:11.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 20:04:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:12.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:04:12.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:04:12.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:04:12.198 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:04:12.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:04:12.198 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:04:12.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:04:12.448 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:04:12.448 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:04:12.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:04:12.518 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:04:12.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:04:12.618 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:04:12.618 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:04:12.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:12.648 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:04:12.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:04:12.648 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:04:12.778 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:04:12.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:13.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:13.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:13.718 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 20:04:13.718 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:04:13.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:14.388 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:04:14.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:04:14.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:14.548 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:04:14.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:04:14.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:04:14.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:04:14.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:15.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:15.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:15.168 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:04:15.168 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:04:15.168 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 65° ===================
17-03-17 20:04:15.168 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:04:15.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:04:15.168 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:04:15.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:04:15.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:04:15.178 -07 000000415 INF: FPGA: Recv TEC2EN 
17-03-17 20:04:15.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:04:15.188 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 65° ===================
17-03-17 20:04:15.188 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:04:15.188 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:04:15.288 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.007176,
17-03-17 20:04:16.748 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:20.648 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.015368,
17-03-17 20:04:21.748 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:26.008 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.018051,
17-03-17 20:04:26.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:31.748 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:31.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:31.978 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.974486,
17-03-17 20:04:36.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:37.338 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.964938,
17-03-17 20:04:41.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:42.698 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.990831,
17-03-17 20:04:45.198 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:04:45.198 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:04:45.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:04:45.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:45.328 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:04:45.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:04:45.328 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:04:45.458 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:04:45.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:46.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:46.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:46.068 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:04:46.068 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:04:46.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:46.228 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:04:46.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:04:46.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:04:46.388 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:04:46.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:04:46.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:04:46.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:04:46.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:46.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:46.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:47.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:47.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:04:47.008 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:04:47.008 -07 000000478 INF: WaitCommand(30000) start
17-03-17 20:04:47.008 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:04:47.008 -07 000000415 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:04:48.228 -07 000000415 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:04:48.228 -07 000000415 INF: LanePump: Xmit /1?\r
17-03-17 20:04:48.258 -07 000000415 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:04:48.258 -07 000000415 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:04:48.388 -07 000000415 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:04:48.428 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:48.818 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.997626,
17-03-17 20:04:50.768 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:50.798 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:04:51.218 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 20:04:51.248 -07 000000415 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:04:51.248 -07 000000415 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:04:51.248 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:04:51.248 -07 000000415 INF: ===================  ===================
17-03-17 20:04:51.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:54.178 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.005817,
17-03-17 20:04:56.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:04:56.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:04:59.538 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.996267,
17-03-17 20:05:02.738 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:02.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:05:04.898 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.964938,
17-03-17 20:05:06.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:05:10.258 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.993549,
17-03-17 20:05:11.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:05:15.618 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.000345,
17-03-17 20:05:16.748 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=464, R2=479, Total=943. Warn if over 250 bubbles per interval.
17-03-17 20:05:17.018 -07 000000478 INF: WaitCommand(30000) end
17-03-17 20:05:17.018 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 22° ===================
17-03-17 20:05:17.018 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:05:17.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:05:17.028 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:05:17.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:17.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:05:17.028 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 20:05:17.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:17.038 -07 000000610 INF: =================== Cycle #34, Flow Cell Temp 22° ===================
17-03-17 20:05:17.038 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:05:17.038 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:05:17.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:05:17.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:17.068 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:05:17.068 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:05:17.068 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:05:17.198 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:05:17.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:20.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:20.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:20.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:20.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:20.978 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.008536,
17-03-17 20:05:21.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:21.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:21.298 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:05:21.298 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:05:21.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:21.458 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:05:21.458 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:05:21.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:21.618 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:05:21.618 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:05:21.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:05:21.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:05:21.748 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 20:05:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:21.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:22.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:22.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:22.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:05:22.238 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:05:23.458 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:05:23.458 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:05:23.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:23.478 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:05:23.478 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:05:23.478 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:05:23.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:05:23.648 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:05:23.648 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:05:23.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:23.718 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:05:23.718 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:05:23.818 -07 000000610 INF: =================== Cycle #34, Pumping Reagent USM (2) ===================
17-03-17 20:05:23.818 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:05:23.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:23.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:05:23.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:05:23.848 -07 000000610 INF: =================== Cycle #34, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:05:23.978 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:05:24.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:25.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:25.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:25.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:25.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:25.938 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:05:25.938 -07 000000610 INF: =================== Cycle #34, Pumping Reagent USM (2) ===================
17-03-17 20:05:26.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:26.098 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:05:26.098 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:05:26.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:26.258 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:05:26.258 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:05:26.258 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:05:26.338 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.005817,
17-03-17 20:05:26.388 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:05:26.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:26.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:26.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:26.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:26.878 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:05:26.878 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:05:28.098 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:05:28.098 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:05:28.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:28.118 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:05:28.118 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:05:28.118 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:05:28.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:05:28.288 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:05:28.288 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:05:28.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:28.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:05:28.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:05:28.458 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:05:28.458 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:05:28.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:28.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:05:28.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:05:28.488 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:05:28.618 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:05:28.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:29.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:29.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:29.558 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:05:29.558 -07 000000610 INF: =================== Cycle #34, Pumping Reagent PR2 (3) ===================
17-03-17 20:05:29.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:29.718 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:05:29.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:05:29.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:05:29.878 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:05:29.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:05:29.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:05:30.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:05:30.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:30.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:30.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:30.498 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:05:30.498 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:05:30.498 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:05:30.498 -07 000000475 INF: WaitCommand(10000) start
17-03-17 20:05:30.498 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:05:31.698 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.99219,
17-03-17 20:05:31.718 -07 000000478 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:05:31.718 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 20:05:31.748 -07 000000478 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:05:31.748 -07 000000478 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:05:31.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:31.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:31.878 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:05:31.918 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:33.448 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:33.478 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:05:33.898 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 20:05:33.928 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:05:33.928 -07 000000478 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:05:33.928 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:05:33.928 -07 000000478 INF: ===================  ===================
17-03-17 20:05:36.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:37.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.003063,
17-03-17 20:05:40.508 -07 000000475 INF: WaitCommand(10000) end
17-03-17 20:05:40.508 -07 000000610 INF: =================== Cycle #34, Imaging ===================
17-03-17 20:05:40.508 -07 000000610 INF: Imaging Cycle 34: ScanTilesCommand Cycle 34 time start.
17-03-17 20:05:40.508 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:05:40.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:40.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:05:40.538 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:05:40.538 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:05:40.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:05:40.858 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:05:40.858 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:05:40.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:05:40.928 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:05:40.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:40.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:40.928 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:05:40.928 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:40.928 -07 000000478 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:05:40.928 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-17 20:05:40.938 -07 000000478 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:05:40.938 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:05:40.938 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23113
17-03-17 20:05:40.948 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:40.948 -07 000000478 INF: RedLED: Using Red data: Photodiode ADC 23113 --> 7.4 mW (old method), or 204.9 mW (new method). Difference = 197.5 mW
17-03-17 20:05:40.948 -07 000000478 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:05:40.948 -07 000000448 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:05:40.958 -07 000000478 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:05:40.958 -07 000000478 INF: RedLED: LED was on for 19 ms
17-03-17 20:05:40.958 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 20:05:40.958 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:05:40.958 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:40.958 -07 000000478 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:05:40.958 -07 000000475 INF: FPGA: Recv EXLED2ON 
17-03-17 20:05:40.968 -07 000000478 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:05:40.968 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:05:40.968 -07 000000547 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 20:05:40.978 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:40.978 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 20:05:40.978 -07 000000478 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:05:40.978 -07 000000475 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:05:40.988 -07 000000478 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:40.988 -07 000000478 INF: GreenLED: LED was on for 19 ms
17-03-17 20:05:40.988 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:05:40.988 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:05:40.988 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 20:05:40.998 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:40.998 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:05:41.498 -07 000000478 INF: FPGA: Recv EMOUT
17-03-17 20:05:41.498 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-17 20:05:41.498 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:05:41.498 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 20:05:41.508 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:05:41.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:05:41.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.12767265070131. ------
17-03-17 20:05:41.508 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:41.508 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17944 mm
17-03-17 20:05:41.508 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:05:41.508 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:05:41.508 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:05:41.508 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 39198, sync = True, waitForSettling = False)
17-03-17 20:05:41.508 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:41.508 -07 000000475 INF: Z Motor: Moving to -0.179437 mm, started at -0.127673 mm, distance = -51.76 um
17-03-17 20:05:41.518 -07 000000475 INF: FPGA: Xmit ZDACW 39198\n [Z Motor]
17-03-17 20:05:41.518 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:41.518 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:05:41.528 -07 000000475 INF: FPGA: 'ZDACW 39198' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:41.528 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:41.528 -07 000000593 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:05:41.538 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:05:41.538 -07 000000547 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:41.538 -07 000000547 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:05:41.538 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:05:41.538 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:05:41.548 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:41.548 -07 000000618 INF: FPGA: Recv ZDACR 39198
17-03-17 20:05:41.558 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:05:41.558 -07 000000475 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:05:41.558 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:05:41.738 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:05:41.738 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:05:41.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:42.418 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.014009,
17-03-17 20:05:43.238 -07 000000486 INF: FPGA: Recv YMVTO 122702 24776
17-03-17 20:05:43.238 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-17 20:05:43.238 -07 000000547 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 20:05:43.238 -07 000000547 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 20:05:43.238 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 20:05:46.088 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:46.088 -07 000000486 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:05:46.098 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:46.098 -07 000000547 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:46.118 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:05:46.118 -07 000000547 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:05:46.118 -07 000000547 INF: Y Motor: Moved to 59.9106 after 4604 ms
17-03-17 20:05:46.118 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179437 mm (DAC = 39198)
17-03-17 20:05:46.118 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.118 -07 000000618 INF: FPGA: Recv ZSGSRD 37224
17-03-17 20:05:46.128 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:46.128 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.128 -07 000000448 INF: FPGA: Recv ZSGSRD 37221
17-03-17 20:05:46.138 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.138 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.138 -07 000000448 INF: FPGA: Recv ZSGSRD 37221
17-03-17 20:05:46.148 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.148 -07 000000486 INF: FPGA: Recv ZSGSRD 37224
17-03-17 20:05:46.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.158 -07 000000448 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:05:46.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.168 -07 000000486 INF: FPGA: Recv ZSGSRD 37221
17-03-17 20:05:46.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.178 -07 000000448 INF: FPGA: Recv ZSGSRD 37223
17-03-17 20:05:46.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.188 -07 000000618 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:05:46.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.198 -07 000000618 INF: FPGA: Recv ZSGSRD 37222
17-03-17 20:05:46.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:46.208 -07 000000618 INF: FPGA: Recv ZSGSRD 37220
17-03-17 20:05:46.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.218 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:46.218 -07 000000486 INF: FPGA: Recv ZPIEZORD 33666
17-03-17 20:05:46.228 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37223 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37222 (-178.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37220 (-178.5 uncal um), Max = 37228 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37223, posNoise = 5, negNoise = 3
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: After move to -0.179437, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: Settle wait time = 4606 ms, measure time = 104 ms (allowed 150 ms), total time = 4710 ms
17-03-17 20:05:46.228 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:05:46.278 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 20:05:46.278 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:05:46.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:46.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:46.278 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:46.278 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:05:46.278 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:46.278 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:46.278 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:46.278 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:05:46.308 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:05:46.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:05:46.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:05:46.308 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:05:46.318 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:05:46.318 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 20:05:46.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:05:46.368 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:05:46.568 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:05:46.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:05:46.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:05:46.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 20:05:46.608 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:05:46.608 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:05:46.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:05:46.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:05:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:05:46.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:05:46.748 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:46.808 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:46.808 -07 000000486 INF: Image SNR check: start
17-03-17 20:05:46.808 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:46.818 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:46.818 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:05:46.818 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=65.98]
17-03-17 20:05:46.818 -07 000000486 INF: Autofocus start
17-03-17 20:05:46.818 -07 000000486 INF: MeasureProfile start
17-03-17 20:05:46.828 -07 000000486 INF: MeasureProfile done
17-03-17 20:05:46.828 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:05:46.828 -07 000000486 INF: Autofocus finished
17-03-17 20:05:47.018 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:05:47.018 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:05:47.018 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179451800563903. ----------
17-03-17 20:05:47.018 -07 000000610 INF: Cycle	34	Tile	1	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:05:47.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37712, sync = True, waitForSettling = True)
17-03-17 20:05:47.028 -07 000000610 INF: Z Motor: Moving to -0.172634 mm, started at -0.179452 mm, distance = 6.82 um
17-03-17 20:05:47.028 -07 000000610 INF: FPGA: Xmit ZDACW 37712\n [Z Motor]
17-03-17 20:05:47.028 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:05:47.038 -07 000000610 INF: FPGA: 'ZDACW 37712' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:47.038 -07 000000618 INF: FPGA: Recv ZDACR 37712
17-03-17 20:05:47.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:05:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.198 -07 000000478 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:05:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.208 -07 000000475 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:05:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:05:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.228 -07 000000618 INF: FPGA: Recv ZSGSRD 36161
17-03-17 20:05:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.238 -07 000000478 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:05:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:05:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.248 -07 000000448 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:05:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.258 -07 000000478 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:05:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36170
17-03-17 20:05:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:05:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:47.288 -07 000000448 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:05:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:47.298 -07 000000475 INF: FPGA: Recv ZPIEZORD 32238
17-03-17 20:05:47.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:47.308 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 20:05:47.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36164 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36163 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36161 (-171.7 uncal um), Max = 36170 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:05:47.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36164, posNoise = 6, negNoise = 3
17-03-17 20:05:47.308 -07 000000610 INF: Z Motor: After move to -0.172634, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:47.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:05:47.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:47.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:47.308 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:47.308 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:05:47.308 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:47.308 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:05:47.308 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:05:47.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:47.308 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:05:47.308 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:05:47.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:47.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:05:47.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:05:47.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:05:47.328 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:05:47.328 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:05:47.328 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:05:47.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:05:47.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:05:47.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:05:47.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:05:47.348 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 20:05:47.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37889 150\n [Camera]
17-03-17 20:05:47.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:05:47.778 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.012614,
17-03-17 20:05:47.958 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:05:47.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:05:47.958 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:47.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:05:47.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:05:47.968 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:48.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:48.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:05:48.078 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:48.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-17 20:05:48.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37889 795
17-03-17 20:05:48.308 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:05:48.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:05:48.478 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:05:48.478 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:48.478 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:48.478 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:05:48.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:05:48.478 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:05:48.478 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:48.488 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:48.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 20:05:48.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1143
17-03-17 20:05:48.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1143
17-03-17 20:05:48.498 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:48.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1143
17-03-17 20:05:48.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1143
17-03-17 20:05:48.508 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:48.508 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:48.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:05:48.508 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:48.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2371631432, 0x0, 418435064) start.
17-03-17 20:05:48.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:05:48.688 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:05:48.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37889 150' command took 2 ms to send, 1329 ms to get response, and 1342 ms overall
17-03-17 20:05:48.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:05:48.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172648559905778. ------
17-03-17 20:05:48.698 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17905 mm
17-03-17 20:05:48.698 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:05:48.698 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:48.708 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:05:48.708 -07 000000448 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:05:48.708 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:48.708 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:48.708 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39114, sync = True, waitForSettling = False)
17-03-17 20:05:48.708 -07 000000478 INF: Z Motor: Moving to -0.179052 mm, started at -0.172649 mm, distance = -6.40 um
17-03-17 20:05:48.708 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:05:48.708 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:05:48.718 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:05:48.718 -07 000000448 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:48.718 -07 000000448 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:05:48.718 -07 000000448 INF: Y Motor: Moving 1331 steps1
17-03-17 20:05:48.718 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:05:48.728 -07 000000478 INF: FPGA: Xmit ZDACW 39114\n [Z Motor]
17-03-17 20:05:48.728 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:05:48.738 -07 000000478 INF: FPGA: 'ZDACW 39114' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:05:48.738 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:05:48.748 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:48.748 -07 000000618 INF: FPGA: Recv ZDACR 39114
17-03-17 20:05:48.758 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:05:48.758 -07 000000478 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:05:48.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:05:48.908 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:05:48.908 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:48.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2371631432, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:05:48.908 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:05:48.908 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:48.908 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:05:48.908 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:05:48.908 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:48.918 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:05:48.918 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:05:48.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:05:49.108 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:05:49.108 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:05:49.138 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:49.138 -07 000000475 INF: FPGA: Recv YRDPOS 124380
17-03-17 20:05:49.148 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:49.148 -07 000000448 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:49.148 -07 000000448 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 20:05:49.148 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-17 20:05:50.098 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:50.098 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:05:50.108 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:50.108 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:50.128 -07 000000448 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:05:50.128 -07 000000448 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:05:50.128 -07 000000448 INF: Y Motor: Moved to 60.7329 after 1421 ms (table move)
17-03-17 20:05:50.128 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179052 mm (DAC = 39114)
17-03-17 20:05:50.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.128 -07 000000448 INF: FPGA: Recv ZSGSRD 37159
17-03-17 20:05:50.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:50.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.138 -07 000000448 INF: FPGA: Recv ZSGSRD 37159
17-03-17 20:05:50.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.148 -07 000000618 INF: FPGA: Recv ZSGSRD 37154
17-03-17 20:05:50.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.158 -07 000000448 INF: FPGA: Recv ZSGSRD 37163
17-03-17 20:05:50.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.168 -07 000000547 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:05:50.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.178 -07 000000448 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:05:50.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.188 -07 000000547 INF: FPGA: Recv ZSGSRD 37166
17-03-17 20:05:50.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.198 -07 000000448 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:05:50.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.208 -07 000000502 INF: FPGA: Recv ZSGSRD 37155
17-03-17 20:05:50.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:50.218 -07 000000593 INF: FPGA: Recv ZSGSRD 37160
17-03-17 20:05:50.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.228 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:50.228 -07 000000512 INF: FPGA: Recv ZPIEZORD 33590
17-03-17 20:05:50.238 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.968 V. Piezo Error = -7.9 V.
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37160 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37161 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37154 (-178.1 uncal um), Max = 37166 (-178.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37160, posNoise = 6, negNoise = 6
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: After move to -0.179052, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 20:05:50.238 -07 000000486 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:05:50.288 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:05:50.288 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:05:50.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:50.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:50.288 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:50.288 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:50.288 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:05:50.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:50.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:50.288 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:05:50.298 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:05:50.298 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:05:50.308 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:05:50.308 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:05:50.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:05:50.358 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:05:50.558 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:05:50.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:05:50.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:05:50.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 20:05:50.598 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:05:50.598 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:05:50.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:05:50.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:05:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:05:50.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 20:05:50.698 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:50.698 -07 000000593 INF: Autofocus start
17-03-17 20:05:50.698 -07 000000593 INF: MeasureProfile start
17-03-17 20:05:50.698 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:50.708 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:50.708 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:05:50.708 -07 000000593 INF: MeasureProfile done
17-03-17 20:05:50.708 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:05:50.708 -07 000000593 INF: Autofocus finished
17-03-17 20:05:50.908 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:05:50.908 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:05:50.908 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179047075198972. ----------
17-03-17 20:05:50.918 -07 000000610 INF: Cycle	34	Tile	2	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:05:50.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37611, sync = True, waitForSettling = True)
17-03-17 20:05:50.918 -07 000000610 INF: Z Motor: Moving to -0.172172 mm, started at -0.179047 mm, distance = 6.87 um
17-03-17 20:05:50.918 -07 000000610 INF: FPGA: Xmit ZDACW 37611\n [Z Motor]
17-03-17 20:05:50.918 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:05:50.928 -07 000000610 INF: FPGA: 'ZDACW 37611' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:05:50.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:50.928 -07 000000593 INF: FPGA: Recv ZDACR 37611
17-03-17 20:05:50.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:50.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:05:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:05:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.098 -07 000000448 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:05:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:05:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.118 -07 000000478 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:05:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.128 -07 000000512 INF: FPGA: Recv ZSGSRD 36082
17-03-17 20:05:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.138 -07 000000502 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:05:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.148 -07 000000593 INF: FPGA: Recv ZSGSRD 36084
17-03-17 20:05:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.158 -07 000000512 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:05:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.168 -07 000000448 INF: FPGA: Recv ZSGSRD 36093
17-03-17 20:05:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:51.178 -07 000000512 INF: FPGA: Recv ZSGSRD 36087
17-03-17 20:05:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:51.188 -07 000000512 INF: FPGA: Recv ZPIEZORD 32161
17-03-17 20:05:51.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:51.198 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-17 20:05:51.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36090 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36091 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36082 (-171.2 uncal um), Max = 36095 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:05:51.198 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36090, posNoise = 5, negNoise = 8
17-03-17 20:05:51.198 -07 000000610 INF: Z Motor: After move to -0.172172, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:51.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:05:51.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:51.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:51.198 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:51.198 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:05:51.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:05:51.198 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:51.198 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:05:51.198 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:51.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:05:51.198 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:05:51.198 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:51.198 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:05:51.208 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:05:51.208 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:05:51.208 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:05:51.208 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:05:51.218 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:05:51.218 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:05:51.218 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:05:51.218 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:05:51.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37788 150\n [Camera]
17-03-17 20:05:51.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:05:51.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:51.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:05:51.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:05:51.838 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:51.838 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:51.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1053102128, 0x0, 391868352) start.
17-03-17 20:05:51.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:05:51.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:05:51.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:51.838 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:51.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1088524392, 0x0, 418435064) start.
17-03-17 20:05:52.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37788 795
17-03-17 20:05:52.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:05:52.238 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1053102128, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:05:52.238 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:05:52.238 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:52.238 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1088524392, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:05:52.238 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:05:52.238 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:52.238 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:52.238 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:05:52.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:52.248 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:05:52.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:05:52.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:05:52.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:52.488 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:52.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:05:52.488 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:05:52.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:05:52.498 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:52.498 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:52.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:05:52.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:05:52.568 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:05:52.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37788 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-17 20:05:52.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:05:52.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172173168207288. ------
17-03-17 20:05:52.568 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:52.568 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17876 mm
17-03-17 20:05:52.568 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:05:52.578 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:52.578 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:05:52.578 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:05:52.578 -07 000000618 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:05:52.578 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:52.578 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 39051, sync = True, waitForSettling = False)
17-03-17 20:05:52.578 -07 000000626 INF: Z Motor: Moving to -0.178764 mm, started at -0.172173 mm, distance = -6.59 um
17-03-17 20:05:52.578 -07 000000486 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:05:52.588 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:05:52.588 -07 000000618 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:52.588 -07 000000618 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:05:52.588 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-17 20:05:52.588 -07 000000626 INF: FPGA: Xmit ZDACW 39051\n [Z Motor]
17-03-17 20:05:52.588 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:05:52.598 -07 000000626 INF: FPGA: 'ZDACW 39051' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:05:52.598 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:05:52.608 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:05:52.618 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:52.618 -07 000000502 INF: FPGA: Recv ZDACR 39051
17-03-17 20:05:52.628 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:05:52.628 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:05:52.798 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:05:52.798 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 20:05:52.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:05:52.888 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:05:52.888 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:52.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:05:52.888 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:05:52.888 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:52.898 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:52.898 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:05:52.898 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:05:52.898 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:05:52.978 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:05:52.978 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:05:53.018 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:53.018 -07 000000512 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:05:53.028 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:53.028 -07 000000618 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:53.028 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:05:53.028 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 20:05:53.138 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.015368,
17-03-17 20:05:53.978 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:53.978 -07 000000475 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:05:53.988 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:53.988 -07 000000618 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:54.008 -07 000000618 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:05:54.008 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:05:54.008 -07 000000618 INF: Y Motor: Moved to 61.5635 after 1431 ms (table move)
17-03-17 20:05:54.008 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178764 mm (DAC = 39051)
17-03-17 20:05:54.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.008 -07 000000593 INF: FPGA: Recv ZSGSRD 37118
17-03-17 20:05:54.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:05:54.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.018 -07 000000593 INF: FPGA: Recv ZSGSRD 37107
17-03-17 20:05:54.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.028 -07 000000593 INF: FPGA: Recv ZSGSRD 37113
17-03-17 20:05:54.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.038 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.038 -07 000000448 INF: FPGA: Recv ZSGSRD 37120
17-03-17 20:05:54.048 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.048 -07 000000576 INF: FPGA: Recv ZSGSRD 37108
17-03-17 20:05:54.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.058 -07 000000576 INF: FPGA: Recv ZSGSRD 37115
17-03-17 20:05:54.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.068 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.068 -07 000000576 INF: FPGA: Recv ZSGSRD 37123
17-03-17 20:05:54.078 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.078 -07 000000576 INF: FPGA: Recv ZSGSRD 37119
17-03-17 20:05:54.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.088 -07 000000576 INF: FPGA: Recv ZSGSRD 37113
17-03-17 20:05:54.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.098 -07 000000576 INF: FPGA: Recv ZSGSRD 37112
17-03-17 20:05:54.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.108 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:54.108 -07 000000576 INF: FPGA: Recv ZPIEZORD 33547
17-03-17 20:05:54.118 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -7.9 V.
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37115 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37114 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37107 (-177.8 uncal um), Max = 37123 (-177.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37115, posNoise = 8, negNoise = 8
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: After move to -0.178764, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:05:54.118 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:05:54.168 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:05:54.168 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:05:54.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:54.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:54.168 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:54.168 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:54.168 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:05:54.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:54.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:54.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:05:54.178 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:05:54.178 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:05:54.178 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:05:54.178 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:05:54.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:05:54.228 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:05:54.428 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:05:54.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:05:54.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:05:54.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1088524392, 0x0, 559484976) start.
17-03-17 20:05:54.468 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:05:54.468 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 20:05:54.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 20:05:54.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1088524392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:05:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:05:54.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:05:54.568 -07 000000618 INF: Autofocus start
17-03-17 20:05:54.568 -07 000000618 INF: MeasureProfile start
17-03-17 20:05:54.568 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:54.568 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:54.578 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:54.578 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:05:54.578 -07 000000618 INF: MeasureProfile done
17-03-17 20:05:54.578 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:05:54.578 -07 000000618 INF: Autofocus finished
17-03-17 20:05:54.778 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:05:54.778 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:05:54.778 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178757985652593. ----------
17-03-17 20:05:54.778 -07 000000610 INF: Cycle	34	Tile	3	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:05:54.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37584, sync = True, waitForSettling = True)
17-03-17 20:05:54.788 -07 000000610 INF: Z Motor: Moving to -0.172049 mm, started at -0.178758 mm, distance = 6.71 um
17-03-17 20:05:54.788 -07 000000610 INF: FPGA: Xmit ZDACW 37584\n [Z Motor]
17-03-17 20:05:54.788 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:05:54.798 -07 000000610 INF: FPGA: 'ZDACW 37584' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:05:54.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:54.798 -07 000000448 INF: FPGA: Recv ZDACR 37584
17-03-17 20:05:54.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:05:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36074
17-03-17 20:05:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.968 -07 000000618 INF: FPGA: Recv ZSGSRD 36077
17-03-17 20:05:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36071
17-03-17 20:05:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.988 -07 000000448 INF: FPGA: Recv ZSGSRD 36070
17-03-17 20:05:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:54.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36071
17-03-17 20:05:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:55.008 -07 000000475 INF: FPGA: Recv ZSGSRD 36074
17-03-17 20:05:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:55.018 -07 000000448 INF: FPGA: Recv ZSGSRD 36071
17-03-17 20:05:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:55.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36075
17-03-17 20:05:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:55.038 -07 000000475 INF: FPGA: Recv ZSGSRD 36072
17-03-17 20:05:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:55.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36075
17-03-17 20:05:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:55.058 -07 000000486 INF: FPGA: Recv ZPIEZORD 32173
17-03-17 20:05:55.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:55.068 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.6 V.
17-03-17 20:05:55.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36073 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36073 (-171.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36070 (-171.2 uncal um), Max = 36077 (-171.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:05:55.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36073, posNoise = 4, negNoise = 3
17-03-17 20:05:55.068 -07 000000610 INF: Z Motor: After move to -0.172049, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:55.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:05:55.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:55.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:55.068 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:05:55.068 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:55.068 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:55.068 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:05:55.068 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:05:55.068 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:55.068 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:05:55.068 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:05:55.068 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:05:55.068 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:05:55.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:05:55.078 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:05:55.078 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:05:55.078 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:05:55.088 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:05:55.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:05:55.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:05:55.088 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:05:55.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37761 150\n [Camera]
17-03-17 20:05:55.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:05:55.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:05:55.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:05:55.708 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:55.708 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:55.708 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1107605776, 0x0, 391868352) start.
17-03-17 20:05:55.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:05:55.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:05:55.708 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:55.838 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:55.838 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:05:55.898 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37761 795
17-03-17 20:05:56.048 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:05:56.098 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1107605776, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:05:56.098 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:05:56.098 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:56.108 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:56.108 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:05:56.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:05:56.228 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:05:56.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:56.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:56.238 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-17 20:05:56.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:05:56.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:05:56.248 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:56.248 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:56.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:05:56.248 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:05:56.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:05:56.248 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:56.248 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:56.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1143028040, 0x0, 418435064) start.
17-03-17 20:05:56.438 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:05:56.438 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:05:56.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37761 150' command took 2 ms to send, 1334 ms to get response, and 1345 ms overall
17-03-17 20:05:56.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:05:56.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.172063956600878. ------
17-03-17 20:05:56.438 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:56.438 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17806 mm
17-03-17 20:05:56.438 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:05:56.658 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:05:56.658 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:05:56.658 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:56.658 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1143028040, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:05:56.658 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:05:56.658 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:56.658 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:05:56.658 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:05:56.658 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:05:56.668 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:05:56.668 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:05:56.678 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 20:05:56.678 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:56.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:56.678 -07 000000475 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:05:56.678 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 233 ms to get response, and 233 ms overall
17-03-17 20:05:56.678 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38897, sync = True, waitForSettling = False)
17-03-17 20:05:56.678 -07 000000475 INF: Z Motor: Moving to -0.178059 mm, started at -0.172064 mm, distance = -6.00 um
17-03-17 20:05:56.688 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:56.688 -07 000000618 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:56.688 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:05:56.688 -07 000000618 INF: Y Motor: Moving 1343 steps-19
17-03-17 20:05:56.698 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:05:56.708 -07 000000475 INF: FPGA: Xmit ZDACW 38897\n [Z Motor]
17-03-17 20:05:56.718 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:05:57.238 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:05:57.238 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:05:57.238 -07 000000475 INF: FPGA: 'ZDACW 38897' command took 0 ms to send, 520 ms to get response, and 554 ms overall
17-03-17 20:05:57.238 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:05:57.238 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:05:57.238 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 510 ms to get response, and 550 ms overall
17-03-17 20:05:57.238 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:57.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:05:57.238 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 530 ms to get response, and 556 ms overall
17-03-17 20:05:57.238 -07 000000512 INF: FPGA: Recv ZDACR 38897
17-03-17 20:05:57.248 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:05:57.248 -07 000000475 INF: Z Motor: MoveAbsStepped took 564 ms (did NOT wait for settling yet))
17-03-17 20:05:57.278 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:57.278 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:05:57.288 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:57.288 -07 000000618 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:57.288 -07 000000618 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:05:57.288 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 550 ms, distance = 0.839 mm, average velocity = 1.526 mm/sec
17-03-17 20:05:58.238 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:05:58.238 -07 000000486 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:05:58.248 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:58.248 -07 000000618 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:05:58.268 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:05:58.268 -07 000000618 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:05:58.268 -07 000000618 INF: Y Motor: Moved to 62.3950 after 1591 ms (table move)
17-03-17 20:05:58.268 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178059 mm (DAC = 38897)
17-03-17 20:05:58.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.268 -07 000000618 INF: FPGA: Recv ZSGSRD 37011
17-03-17 20:05:58.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:05:58.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.278 -07 000000618 INF: FPGA: Recv ZSGSRD 37000
17-03-17 20:05:58.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36997
17-03-17 20:05:58.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.298 -07 000000626 INF: FPGA: Recv ZSGSRD 37014
17-03-17 20:05:58.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.308 -07 000000486 INF: FPGA: Recv ZSGSRD 37018
17-03-17 20:05:58.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.318 -07 000000486 INF: FPGA: Recv ZSGSRD 37012
17-03-17 20:05:58.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.328 -07 000000618 INF: FPGA: Recv ZSGSRD 37001
17-03-17 20:05:58.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.338 -07 000000593 INF: FPGA: Recv ZSGSRD 36996
17-03-17 20:05:58.348 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.348 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.348 -07 000000593 INF: FPGA: Recv ZSGSRD 37009
17-03-17 20:05:58.358 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:58.358 -07 000000593 INF: FPGA: Recv ZSGSRD 37005
17-03-17 20:05:58.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.368 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:58.368 -07 000000593 INF: FPGA: Recv ZPIEZORD 33380
17-03-17 20:05:58.378 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.935 V. Piezo Error = -8.0 V.
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37006 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37007 (-177.2 uncal um), StdDev = 8 (0.1 uncal um), Range = 22 (0.1 uncal um), Min = 36996 (-177.1 uncal um), Max = 37018 (-177.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37006, posNoise = 12, negNoise = 10
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: After move to -0.178059, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: Settle wait time = 1588 ms, measure time = 107 ms (allowed 150 ms), total time = 1695 ms
17-03-17 20:05:58.378 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:05:58.428 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1980 ms
17-03-17 20:05:58.428 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:05:58.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:58.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:58.428 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:58.428 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:58.428 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:05:58.428 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:58.428 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:05:58.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:05:58.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:05:58.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:05:58.448 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:05:58.448 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:05:58.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:05:58.488 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:05:58.498 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.020806,
17-03-17 20:05:58.688 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:05:58.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:05:58.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:05:58.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1088524392, 0x0, 559484976) start.
17-03-17 20:05:58.728 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:05:58.728 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:05:58.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:05:58.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1088524392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:05:58.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:05:58.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:05:58.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:05:58.828 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:05:58.828 -07 000000618 INF: Autofocus start
17-03-17 20:05:58.828 -07 000000618 INF: MeasureProfile start
17-03-17 20:05:58.828 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:05:58.838 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:05:58.838 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:05:58.838 -07 000000618 INF: MeasureProfile done
17-03-17 20:05:58.838 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:05:58.838 -07 000000618 INF: Autofocus finished
17-03-17 20:05:59.038 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:05:59.038 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:05:59.038 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178057746529141. ----------
17-03-17 20:05:59.038 -07 000000610 INF: Cycle	34	Tile	4	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:05:59.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37394, sync = True, waitForSettling = True)
17-03-17 20:05:59.048 -07 000000610 INF: Z Motor: Moving to -0.171179 mm, started at -0.178058 mm, distance = 6.88 um
17-03-17 20:05:59.048 -07 000000610 INF: FPGA: Xmit ZDACW 37394\n [Z Motor]
17-03-17 20:05:59.048 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:05:59.058 -07 000000610 INF: FPGA: 'ZDACW 37394' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:05:59.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:05:59.058 -07 000000475 INF: FPGA: Recv ZDACR 37394
17-03-17 20:05:59.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:05:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35928
17-03-17 20:05:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:05:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:05:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.238 -07 000000502 INF: FPGA: Recv ZSGSRD 35942
17-03-17 20:05:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35939
17-03-17 20:05:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.258 -07 000000475 INF: FPGA: Recv ZSGSRD 35933
17-03-17 20:05:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35937
17-03-17 20:05:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.278 -07 000000475 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:05:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35937
17-03-17 20:05:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.298 -07 000000547 INF: FPGA: Recv ZSGSRD 35941
17-03-17 20:05:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:05:59.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:05:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:05:59.318 -07 000000547 INF: FPGA: Recv ZPIEZORD 31949
17-03-17 20:05:59.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:05:59.328 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.8 V.
17-03-17 20:05:59.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35937 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35938 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:05:59.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35937, posNoise = 5, negNoise = 9
17-03-17 20:05:59.328 -07 000000610 INF: Z Motor: After move to -0.171179, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:05:59.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:05:59.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:05:59.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:05:59.328 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:05:59.328 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:05:59.328 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:05:59.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:05:59.328 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:05:59.328 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:05:59.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:05:59.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:05:59.328 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:05:59.328 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:05:59.338 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:05:59.338 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:05:59.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:05:59.338 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:05:59.348 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:05:59.348 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:05:59.348 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:05:59.348 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:05:59.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37571 150\n [Camera]
17-03-17 20:05:59.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:05:59.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:05:59.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:05:59.958 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:05:59.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:05:59.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:05:59.958 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:05:59.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:05:59.958 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:05:59.958 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:05:59.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:06:00.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37571 797
17-03-17 20:06:00.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:00.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:06:00.338 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:06:00.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:00.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:06:00.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:06:00.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:00.348 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:00.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:00.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:06:00.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:06:00.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:00.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:00.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:00.498 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:00.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:06:00.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:00.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:00.508 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:00.508 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:00.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:06:00.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:00.688 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:00.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37571 150' command took 2 ms to send, 1336 ms to get response, and 1341 ms overall
17-03-17 20:06:00.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:00.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171190263749598. ------
17-03-17 20:06:00.698 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:00.698 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17761 mm
17-03-17 20:06:00.698 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:00.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:06:00.908 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:06:00.908 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:00.908 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:06:00.908 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:06:00.908 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:00.908 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:00.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:00.908 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:06:00.918 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:06:00.928 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:06:00.928 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 20:06:00.928 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:00.928 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:00.928 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 224 ms to get response, and 232 ms overall
17-03-17 20:06:00.928 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38799, sync = True, waitForSettling = False)
17-03-17 20:06:00.928 -07 000000486 INF: Z Motor: Moving to -0.177610 mm, started at -0.171190 mm, distance = -6.42 um
17-03-17 20:06:00.938 -07 000000486 INF: FPGA: Xmit ZDACW 38799\n [Z Motor]
17-03-17 20:06:00.948 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:01.738 -07 000000547 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:06:01.738 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:06:01.738 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:01.738 -07 000000486 INF: FPGA: 'ZDACW 38799' command took 0 ms to send, 790 ms to get response, and 804 ms overall
17-03-17 20:06:01.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 800 ms to get response, and 807 ms overall
17-03-17 20:06:01.738 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:01.738 -07 000000478 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:01.738 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:01.738 -07 000000478 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:06:01.738 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 780 ms to get response, and 806 ms overall
17-03-17 20:06:01.738 -07 000000547 INF: FPGA: Recv ZDACR 38799
17-03-17 20:06:01.748 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:01.748 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:01.748 -07 000000486 INF: Z Motor: MoveAbsStepped took 814 ms (did NOT wait for settling yet))
17-03-17 20:06:01.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:02.118 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 20:06:02.118 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:06:02.158 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:02.158 -07 000000512 INF: FPGA: Recv YRDPOS 129481
17-03-17 20:06:02.168 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:02.168 -07 000000478 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:02.168 -07 000000478 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:06:02.168 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.170 mm/sec
17-03-17 20:06:03.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:03.118 -07 000000547 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:06:03.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.128 -07 000000478 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:03.148 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:03.148 -07 000000478 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:03.148 -07 000000478 INF: Y Motor: Moved to 63.2236 after 2220 ms (table move)
17-03-17 20:06:03.148 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177610 mm (DAC = 38799)
17-03-17 20:06:03.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.148 -07 000000561 INF: FPGA: Recv ZSGSRD 36944
17-03-17 20:06:03.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:03.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.158 -07 000000547 INF: FPGA: Recv ZSGSRD 36938
17-03-17 20:06:03.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36939
17-03-17 20:06:03.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.178 -07 000000478 INF: FPGA: Recv ZSGSRD 36939
17-03-17 20:06:03.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36943
17-03-17 20:06:03.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.198 -07 000000593 INF: FPGA: Recv ZSGSRD 36942
17-03-17 20:06:03.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36945
17-03-17 20:06:03.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.218 -07 000000593 INF: FPGA: Recv ZSGSRD 36935
17-03-17 20:06:03.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36934
17-03-17 20:06:03.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:03.238 -07 000000478 INF: FPGA: Recv ZSGSRD 36941
17-03-17 20:06:03.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:03.248 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:03.248 -07 000000512 INF: FPGA: Recv ZPIEZORD 33340
17-03-17 20:06:03.258 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.920 V. Piezo Error = -8.0 V.
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36940 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36940 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36934 (-176.7 uncal um), Max = 36945 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36940, posNoise = 5, negNoise = 6
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: After move to -0.177610, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: Settle wait time = 2220 ms, measure time = 104 ms (allowed 150 ms), total time = 2324 ms
17-03-17 20:06:03.258 -07 000000475 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:03.308 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2607 ms
17-03-17 20:06:03.308 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:03.308 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:03.308 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:03.308 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:03.308 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:03.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:06:03.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:03.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:03.318 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:03.318 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:06:03.328 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:06:03.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:03.368 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:03.568 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:03.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:03.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:03.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 20:06:03.608 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:03.608 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:03.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:06:03.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:06:03.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:03.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:06:03.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:06:03.708 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:03.708 -07 000000502 INF: Autofocus start
17-03-17 20:06:03.708 -07 000000502 INF: MeasureProfile start
17-03-17 20:06:03.708 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:03.718 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:03.718 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:03.718 -07 000000502 INF: MeasureProfile done
17-03-17 20:06:03.718 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:06:03.718 -07 000000502 INF: Autofocus finished
17-03-17 20:06:03.858 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.005817,
17-03-17 20:06:03.918 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:03.918 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:06:03.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177633748527785. ----------
17-03-17 20:06:03.918 -07 000000610 INF: Cycle	34	Tile	5	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:03.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37314, sync = True, waitForSettling = True)
17-03-17 20:06:03.928 -07 000000610 INF: Z Motor: Moving to -0.170813 mm, started at -0.177634 mm, distance = 6.82 um
17-03-17 20:06:03.928 -07 000000610 INF: FPGA: Xmit ZDACW 37314\n [Z Motor]
17-03-17 20:06:03.928 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:06:03.938 -07 000000610 INF: FPGA: 'ZDACW 37314' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:03.938 -07 000000547 INF: FPGA: Recv ZDACR 37314
17-03-17 20:06:03.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:03.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35880
17-03-17 20:06:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.108 -07 000000478 INF: FPGA: Recv ZSGSRD 35877
17-03-17 20:06:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.118 -07 000000478 INF: FPGA: Recv ZSGSRD 35876
17-03-17 20:06:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35882
17-03-17 20:06:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35883
17-03-17 20:06:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.148 -07 000000561 INF: FPGA: Recv ZSGSRD 35876
17-03-17 20:06:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.158 -07 000000475 INF: FPGA: Recv ZSGSRD 35882
17-03-17 20:06:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35879
17-03-17 20:06:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35877
17-03-17 20:06:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:04.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35880
17-03-17 20:06:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:04.198 -07 000000478 INF: FPGA: Recv ZPIEZORD 31871
17-03-17 20:06:04.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:04.208 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -8.9 V.
17-03-17 20:06:04.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35879 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35880 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35876 (-169.9 uncal um), Max = 35883 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:06:04.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35879, posNoise = 4, negNoise = 3
17-03-17 20:06:04.208 -07 000000610 INF: Z Motor: After move to -0.170813, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:04.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:06:04.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:04.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:04.208 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:04.208 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:04.208 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:04.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:04.208 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:04.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:04.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:04.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:04.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:04.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:04.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:04.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:04.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:04.218 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:04.228 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:06:04.228 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:06:04.228 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:06:04.228 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:06:04.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37490 150\n [Camera]
17-03-17 20:06:04.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:04.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:04.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:04.848 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:04.848 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:04.848 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:06:04.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:04.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:04.848 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:04.848 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:04.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:06:05.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37490 795
17-03-17 20:06:05.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:05.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:06:05.248 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:06:05.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:05.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:05.248 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:06:05.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:06:05.248 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:06:05.248 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:05.258 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:05.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:06:05.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:05.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:05.388 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:05.388 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:05.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:06:05.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:05.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:05.388 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:05.388 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:05.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:06:05.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:05.578 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:05.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37490 150' command took 2 ms to send, 1332 ms to get response, and 1342 ms overall
17-03-17 20:06:05.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:05.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170817659445376. ------
17-03-17 20:06:05.708 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:05.708 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17727 mm
17-03-17 20:06:05.708 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:05.708 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:06:05.708 -07 000000475 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 20:06:05.708 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:05.708 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38725, sync = True, waitForSettling = False)
17-03-17 20:06:05.708 -07 000000448 INF: Z Motor: Moving to -0.177272 mm, started at -0.170818 mm, distance = -6.45 um
17-03-17 20:06:05.718 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:05.718 -07 000000448 INF: FPGA: Xmit ZDACW 38725\n [Z Motor]
17-03-17 20:06:05.718 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:06:05.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:05.728 -07 000000448 INF: FPGA: 'ZDACW 38725' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:06:05.728 -07 000000478 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:06:05.738 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:05.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:06:05.738 -07 000000475 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:05.738 -07 000000475 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:05.738 -07 000000475 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:06:05.748 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:05.758 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:05.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 20:06:05.788 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:06:05.788 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:05.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 20:06:05.798 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:06:05.798 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:05.798 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:05.798 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:05.798 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:06:05.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:06:05.818 -07 000000561 INF: FPGA: Recv ZDACR 38725
17-03-17 20:06:05.818 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 63 ms to get response, and 93 ms overall
17-03-17 20:06:05.818 -07 000000448 INF: Z Motor: MoveAbsStepped took 106 ms (did NOT wait for settling yet))
17-03-17 20:06:05.938 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:05.938 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:06:06.128 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:06:06.128 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:06.168 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:06.168 -07 000000448 INF: FPGA: Recv YRDPOS 131187
17-03-17 20:06:06.178 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:06.178 -07 000000475 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:06.178 -07 000000475 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:06:06.178 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 20:06:06.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:07.128 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:07.128 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:06:07.138 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:07.138 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:07.158 -07 000000475 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:07.158 -07 000000475 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:07.158 -07 000000475 INF: Y Motor: Moved to 64.0566 after 1444 ms (table move)
17-03-17 20:06:07.158 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177272 mm (DAC = 38725)
17-03-17 20:06:07.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.158 -07 000000561 INF: FPGA: Recv ZSGSRD 36888
17-03-17 20:06:07.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:07.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:06:07.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.178 -07 000000512 INF: FPGA: Recv ZSGSRD 36883
17-03-17 20:06:07.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:06:07.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.198 -07 000000512 INF: FPGA: Recv ZSGSRD 36887
17-03-17 20:06:07.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.208 -07 000000561 INF: FPGA: Recv ZSGSRD 36880
17-03-17 20:06:07.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.218 -07 000000512 INF: FPGA: Recv ZSGSRD 36884
17-03-17 20:06:07.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36878
17-03-17 20:06:07.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.238 -07 000000512 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:06:07.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:07.248 -07 000000512 INF: FPGA: Recv ZSGSRD 36891
17-03-17 20:06:07.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.258 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:07.258 -07 000000512 INF: FPGA: Recv ZPIEZORD 33250
17-03-17 20:06:07.268 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.1 V.
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36885 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36885 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36878 (-176.3 uncal um), Max = 36891 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36885, posNoise = 6, negNoise = 7
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: After move to -0.177272, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:06:07.268 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:07.318 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:06:07.318 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:07.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:07.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:07.318 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:07.318 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:07.318 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:07.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:07.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:06:07.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:07.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:07.328 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:07.328 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:06:07.328 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:06:07.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:07.378 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:07.578 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:07.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:07.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:07.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 20:06:07.618 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:07.618 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:07.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:06:07.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:06:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:07.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:07.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:06:07.718 -07 000000576 INF: Autofocus start
17-03-17 20:06:07.718 -07 000000576 INF: MeasureProfile start
17-03-17 20:06:07.718 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:07.718 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:07.728 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:07.728 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:07.728 -07 000000576 INF: MeasureProfile done
17-03-17 20:06:07.728 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:07.728 -07 000000576 INF: Autofocus finished
17-03-17 20:06:07.928 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:07.928 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:07.938 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177280416859988. ----------
17-03-17 20:06:07.938 -07 000000610 INF: Cycle	34	Tile	6	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:07.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37222, sync = True, waitForSettling = True)
17-03-17 20:06:07.938 -07 000000610 INF: Z Motor: Moving to -0.170391 mm, started at -0.177280 mm, distance = 6.89 um
17-03-17 20:06:07.938 -07 000000610 INF: FPGA: Xmit ZDACW 37222\n [Z Motor]
17-03-17 20:06:07.938 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:06:07.948 -07 000000610 INF: FPGA: 'ZDACW 37222' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:07.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:07.958 -07 000000512 INF: FPGA: Recv ZDACR 37222
17-03-17 20:06:07.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:07.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.118 -07 000000448 INF: FPGA: Recv ZSGSRD 35814
17-03-17 20:06:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35819
17-03-17 20:06:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.138 -07 000000448 INF: FPGA: Recv ZSGSRD 35813
17-03-17 20:06:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.148 -07 000000561 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:06:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.158 -07 000000475 INF: FPGA: Recv ZSGSRD 35818
17-03-17 20:06:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35819
17-03-17 20:06:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35817
17-03-17 20:06:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35813
17-03-17 20:06:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.198 -07 000000475 INF: FPGA: Recv ZSGSRD 35815
17-03-17 20:06:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:08.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35817
17-03-17 20:06:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:08.218 -07 000000561 INF: FPGA: Recv ZPIEZORD 31794
17-03-17 20:06:08.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:08.228 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -8.9 V.
17-03-17 20:06:08.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35807 (-169.5 uncal um), Max = 35819 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:06:08.228 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 4, negNoise = 8
17-03-17 20:06:08.228 -07 000000610 INF: Z Motor: After move to -0.170391, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:08.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 20:06:08.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:08.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:08.228 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:08.228 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:08.228 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:08.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:08.228 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:08.228 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:08.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:06:08.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:08.228 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:08.228 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:08.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:08.238 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:08.238 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:08.238 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:08.238 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:06:08.238 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:08.248 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:06:08.248 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:08.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37399 150\n [Camera]
17-03-17 20:06:08.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:08.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:08.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:08.858 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:08.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:08.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:08.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:08.868 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:08.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) start.
17-03-17 20:06:08.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:08.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) start.
17-03-17 20:06:09.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37399 795
17-03-17 20:06:09.198 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:09.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.018051,
17-03-17 20:06:09.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:06:09.268 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:06:09.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:09.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:06:09.268 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:06:09.268 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:09.268 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:09.268 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:06:09.268 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:09.278 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:06:09.398 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:09.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:09.398 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:09.398 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:09.398 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:06:09.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:09.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:09.398 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:09.398 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:09.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:06:09.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:09.588 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:09.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37399 150' command took 2 ms to send, 1335 ms to get response, and 1343 ms overall
17-03-17 20:06:09.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:09.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170406509868304. ------
17-03-17 20:06:09.598 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:09.598 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17693 mm
17-03-17 20:06:09.598 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:09.598 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:09.718 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 20:06:09.718 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:09.718 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38649, sync = True, waitForSettling = False)
17-03-17 20:06:09.718 -07 000000626 INF: Z Motor: Moving to -0.176924 mm, started at -0.170407 mm, distance = -6.52 um
17-03-17 20:06:09.718 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:06:09.718 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 20:06:09.728 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:09.728 -07 000000475 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:06:09.738 -07 000000626 INF: FPGA: Xmit ZDACW 38649\n [Z Motor]
17-03-17 20:06:09.738 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:06:09.738 -07 000000561 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:09.738 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:09.738 -07 000000561 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:06:09.738 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:06:09.748 -07 000000626 INF: FPGA: 'ZDACW 38649' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:06:09.748 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:09.748 -07 000000618 INF: FPGA: Recv ZDACR 38649
17-03-17 20:06:09.758 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:09.758 -07 000000626 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:06:09.758 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:09.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 20:06:09.808 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:06:09.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:09.808 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:06:09.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:06:09.808 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:09.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:09.808 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:09.808 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:06:09.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:06:09.918 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:09.918 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:06:10.128 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:06:10.128 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:10.168 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:10.168 -07 000000626 INF: FPGA: Recv YRDPOS 132870
17-03-17 20:06:10.178 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:10.178 -07 000000561 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:10.178 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:06:10.178 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 20:06:11.128 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:11.128 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:06:11.138 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:11.138 -07 000000561 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:11.158 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:11.158 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:11.158 -07 000000561 INF: Y Motor: Moved to 64.8784 after 1439 ms (table move)
17-03-17 20:06:11.158 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176924 mm (DAC = 38649)
17-03-17 20:06:11.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.158 -07 000000626 INF: FPGA: Recv ZSGSRD 36825
17-03-17 20:06:11.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:11.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.168 -07 000000502 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:06:11.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.178 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.178 -07 000000626 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:06:11.188 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.188 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.188 -07 000000502 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:06:11.198 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.198 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.198 -07 000000626 INF: FPGA: Recv ZSGSRD 36839
17-03-17 20:06:11.208 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.208 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36831
17-03-17 20:06:11.218 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.218 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:06:11.228 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.228 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.228 -07 000000626 INF: FPGA: Recv ZSGSRD 36830
17-03-17 20:06:11.238 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.238 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.248 -07 000000561 INF: FPGA: Recv ZSGSRD 36832
17-03-17 20:06:11.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 10 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:06:11.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:11.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36826
17-03-17 20:06:11.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.268 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:11.268 -07 000000561 INF: FPGA: Recv ZPIEZORD 33186
17-03-17 20:06:11.278 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.1 V.
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36830 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36830 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36825 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36830, posNoise = 9, negNoise = 5
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: After move to -0.176924, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: Settle wait time = 1443 ms, measure time = 115 ms (allowed 150 ms), total time = 1558 ms
17-03-17 20:06:11.278 -07 000000512 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:11.318 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 20:06:11.318 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:11.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:11.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:11.318 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:11.318 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:11.328 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:11.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:11.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:11.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:11.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:11.328 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:11.338 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:06:11.338 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:06:11.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:11.388 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:11.588 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:11.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:11.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:11.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 20:06:11.628 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:11.628 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:11.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:06:11.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:06:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:11.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:06:11.728 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:11.728 -07 000000512 INF: Autofocus start
17-03-17 20:06:11.728 -07 000000512 INF: MeasureProfile start
17-03-17 20:06:11.728 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:11.738 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:11.738 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:11.748 -07 000000512 INF: MeasureProfile done
17-03-17 20:06:11.748 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:11.748 -07 000000512 INF: Autofocus finished
17-03-17 20:06:11.748 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:11.938 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:11.938 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:11.938 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176927085192191. ----------
17-03-17 20:06:11.948 -07 000000610 INF: Cycle	34	Tile	7	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:11.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37146, sync = True, waitForSettling = True)
17-03-17 20:06:11.948 -07 000000610 INF: Z Motor: Moving to -0.170043 mm, started at -0.176927 mm, distance = 6.88 um
17-03-17 20:06:11.948 -07 000000610 INF: FPGA: Xmit ZDACW 37146\n [Z Motor]
17-03-17 20:06:11.948 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:06:11.958 -07 000000610 INF: FPGA: 'ZDACW 37146' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:11.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:11.958 -07 000000561 INF: FPGA: Recv ZDACR 37146
17-03-17 20:06:11.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:11.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35763
17-03-17 20:06:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.128 -07 000000475 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:06:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:06:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35755
17-03-17 20:06:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35761
17-03-17 20:06:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35759
17-03-17 20:06:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35759
17-03-17 20:06:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:06:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:06:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:12.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35763
17-03-17 20:06:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:12.218 -07 000000512 INF: FPGA: Recv ZPIEZORD 31746
17-03-17 20:06:12.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:12.228 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.9 V.
17-03-17 20:06:12.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35761 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35762 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35755 (-169.1 uncal um), Max = 35764 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:06:12.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35761, posNoise = 3, negNoise = 6
17-03-17 20:06:12.228 -07 000000610 INF: Z Motor: After move to -0.170043, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:12.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:06:12.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:12.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:12.228 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:12.228 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:12.228 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:12.228 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:12.228 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:12.228 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:12.228 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:12.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:12.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:12.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:12.228 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:12.228 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:12.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:06:12.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:12.248 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:06:12.248 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:06:12.248 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:06:12.248 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:06:12.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37323 150\n [Camera]
17-03-17 20:06:12.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:06:12.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:12.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:12.868 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:12.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:12.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:12.868 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:12.868 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:12.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:06:12.868 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:12.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 20:06:13.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37323 795
17-03-17 20:06:13.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:06:13.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:06:13.258 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:06:13.258 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:13.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:06:13.268 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:06:13.268 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:13.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:13.268 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:13.268 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:06:13.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:06:13.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:13.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:13.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:13.408 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:13.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) start.
17-03-17 20:06:13.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:13.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:13.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:13.408 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:13.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) start.
17-03-17 20:06:13.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:13.598 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:13.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37323 150' command took 2 ms to send, 1332 ms to get response, and 1342 ms overall
17-03-17 20:06:13.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:13.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170059602412649. ------
17-03-17 20:06:13.598 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:13.598 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17648 mm
17-03-17 20:06:13.598 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:13.608 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:06:13.608 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 20:06:13.608 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:13.608 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38552, sync = True, waitForSettling = False)
17-03-17 20:06:13.608 -07 000000626 INF: Z Motor: Moving to -0.176480 mm, started at -0.170060 mm, distance = -6.42 um
17-03-17 20:06:13.608 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:13.608 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 20:06:13.608 -07 000000459 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:06:13.618 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:13.618 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:13.618 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:13.618 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:06:13.618 -07 000000626 INF: FPGA: Xmit ZDACW 38552\n [Z Motor]
17-03-17 20:06:13.618 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:06:13.628 -07 000000626 INF: FPGA: 'ZDACW 38552' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:06:13.628 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:13.638 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:13.648 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:13.648 -07 000000547 INF: FPGA: Recv ZDACR 38552
17-03-17 20:06:13.658 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:13.658 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:06:13.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:06:13.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:06:13.808 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:13.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:06:13.808 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:06:13.808 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:13.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:13.808 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:13.808 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:06:13.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:06:13.828 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:13.828 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:06:14.008 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:06:14.008 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:14.048 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:14.048 -07 000000626 INF: FPGA: Recv YRDPOS 134581
17-03-17 20:06:14.058 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:14.058 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:14.058 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:06:14.058 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 20:06:14.578 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.001704,
17-03-17 20:06:15.008 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:15.008 -07 000000512 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:06:15.018 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:15.018 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:15.038 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:15.038 -07 000000475 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:15.038 -07 000000475 INF: Y Motor: Moved to 65.7139 after 1435 ms (table move)
17-03-17 20:06:15.038 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176480 mm (DAC = 38552)
17-03-17 20:06:15.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36768
17-03-17 20:06:15.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:06:15.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.048 -07 000000478 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:06:15.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:15.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.058 -07 000000593 INF: FPGA: Recv ZSGSRD 36764
17-03-17 20:06:15.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.068 -07 000000547 INF: FPGA: Recv ZSGSRD 36765
17-03-17 20:06:15.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.078 -07 000000415 INF: FPGA: Recv ZSGSRD 36763
17-03-17 20:06:15.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.088 -07 000000512 INF: FPGA: Recv ZSGSRD 36766
17-03-17 20:06:15.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36758
17-03-17 20:06:15.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.108 -07 000000478 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:06:15.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.118 -07 000000415 INF: FPGA: Recv ZSGSRD 36761
17-03-17 20:06:15.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.128 -07 000000478 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:06:15.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.138 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:15.138 -07 000000459 INF: FPGA: Recv ZPIEZORD 33080
17-03-17 20:06:15.148 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.2 V.
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36762 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36762 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36758 (-175.6 uncal um), Max = 36768 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36762, posNoise = 6, negNoise = 4
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: After move to -0.176480, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: Settle wait time = 1437 ms, measure time = 101 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:06:15.148 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:15.198 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:06:15.198 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:15.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:15.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:15.198 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:15.198 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:15.198 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:15.198 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:15.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:15.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:15.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:15.208 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:15.218 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:06:15.218 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:06:15.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:15.268 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:15.468 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:15.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:15.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:15.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2336209168, 0x0, 559484976) start.
17-03-17 20:06:15.508 -07 000000478 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:06:15.508 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:15.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:06:15.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2336209168, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:06:15.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:15.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:15.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:06:15.608 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:15.608 -07 000000459 INF: Autofocus start
17-03-17 20:06:15.608 -07 000000459 INF: MeasureProfile start
17-03-17 20:06:15.608 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:15.618 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:15.618 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:15.618 -07 000000459 INF: MeasureProfile done
17-03-17 20:06:15.618 -07 000000459 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:06:15.618 -07 000000459 INF: Autofocus finished
17-03-17 20:06:15.818 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:15.818 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:15.828 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176490238766551. ----------
17-03-17 20:06:15.828 -07 000000610 INF: Cycle	34	Tile	8	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:15.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37102, sync = True, waitForSettling = True)
17-03-17 20:06:15.828 -07 000000610 INF: Z Motor: Moving to -0.169842 mm, started at -0.176490 mm, distance = 6.65 um
17-03-17 20:06:15.828 -07 000000610 INF: FPGA: Xmit ZDACW 37102\n [Z Motor]
17-03-17 20:06:15.828 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:06:15.838 -07 000000610 INF: FPGA: 'ZDACW 37102' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:15.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:15.838 -07 000000626 INF: FPGA: Recv ZDACR 37102
17-03-17 20:06:15.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:15.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:15.998 -07 000000593 INF: FPGA: Recv ZSGSRD 35732
17-03-17 20:06:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.008 -07 000000459 INF: FPGA: Recv ZSGSRD 35728
17-03-17 20:06:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.018 -07 000000478 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:06:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.028 -07 000000459 INF: FPGA: Recv ZSGSRD 35726
17-03-17 20:06:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.038 -07 000000478 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:06:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.048 -07 000000626 INF: FPGA: Recv ZSGSRD 35729
17-03-17 20:06:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:06:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.068 -07 000000626 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:06:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.078 -07 000000478 INF: FPGA: Recv ZSGSRD 35731
17-03-17 20:06:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:16.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:06:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:16.098 -07 000000626 INF: FPGA: Recv ZPIEZORD 31719
17-03-17 20:06:16.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:16.108 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -8.9 V.
17-03-17 20:06:16.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35729 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35726 (-169.0 uncal um), Max = 35734 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:06:16.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35729, posNoise = 5, negNoise = 3
17-03-17 20:06:16.108 -07 000000610 INF: Z Motor: After move to -0.169842, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:16.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:06:16.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:16.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:16.108 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:16.108 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:16.108 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:16.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:16.108 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:16.108 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:16.118 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:16.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:16.118 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:06:16.118 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:16.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:16.118 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:16.118 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:16.118 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:16.128 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:06:16.128 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:06:16.128 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:06:16.128 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:06:16.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37279 150\n [Camera]
17-03-17 20:06:16.328 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:16.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:16.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:16.738 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:16.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:16.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:06:16.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:16.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:16.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:16.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:16.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:06:16.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:16.928 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37279 795
17-03-17 20:06:17.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:17.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:06:17.128 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:06:17.128 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:17.128 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:06:17.128 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:06:17.128 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:17.128 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:17.128 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:17.128 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:06:17.138 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:06:17.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:17.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:17.278 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:17.278 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:17.278 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:06:17.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:17.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:17.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:17.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:17.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:06:17.468 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:17.468 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:17.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37279 150' command took 2 ms to send, 1338 ms to get response, and 1341 ms overall
17-03-17 20:06:17.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:17.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169854027624112. ------
17-03-17 20:06:17.608 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17632 mm
17-03-17 20:06:17.608 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:17.608 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:17.608 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38518, sync = True, waitForSettling = False)
17-03-17 20:06:17.608 -07 000000475 INF: Z Motor: Moving to -0.176324 mm, started at -0.169854 mm, distance = -6.47 um
17-03-17 20:06:17.608 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:06:17.608 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 20:06:17.608 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:17.618 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:17.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:17.618 -07 000000547 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:06:17.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:06:17.628 -07 000000561 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:17.628 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:17.628 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:06:17.628 -07 000000475 INF: FPGA: Xmit ZDACW 38518\n [Z Motor]
17-03-17 20:06:17.628 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:06:17.638 -07 000000475 INF: FPGA: 'ZDACW 38518' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:06:17.638 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:17.648 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:17.658 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:17.658 -07 000000593 INF: FPGA: Recv ZDACR 38518
17-03-17 20:06:17.668 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:17.668 -07 000000475 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 20:06:17.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:06:17.678 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:06:17.678 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:17.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:06:17.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:06:17.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:17.678 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:17.688 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:06:17.688 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:06:17.688 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:06:17.838 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:17.838 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:06:18.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:06:18.018 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 20:06:18.058 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:18.058 -07 000000512 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:06:18.068 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:18.068 -07 000000561 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:18.068 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:06:18.068 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 20:06:19.018 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:19.018 -07 000000626 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:06:19.028 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:19.028 -07 000000561 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:19.048 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:19.048 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:19.048 -07 000000561 INF: Y Motor: Moved to 66.5386 after 1438 ms (table move)
17-03-17 20:06:19.048 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176324 mm (DAC = 38518)
17-03-17 20:06:19.048 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:06:19.058 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 20:06:19.058 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.058 -07 000000626 INF: FPGA: Recv ZSGSRD 36737
17-03-17 20:06:19.068 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:19.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.068 -07 000000626 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:06:19.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.078 -07 000000626 INF: FPGA: Recv ZSGSRD 36744
17-03-17 20:06:19.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.088 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.088 -07 000000576 INF: FPGA: Recv ZSGSRD 36740
17-03-17 20:06:19.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36741
17-03-17 20:06:19.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.108 -07 000000576 INF: FPGA: Recv ZSGSRD 36744
17-03-17 20:06:19.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.118 -07 000000576 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:06:19.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.128 -07 000000512 INF: FPGA: Recv ZSGSRD 36733
17-03-17 20:06:19.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:19.138 -07 000000576 INF: FPGA: Recv ZSGSRD 36733
17-03-17 20:06:19.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.148 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:19.148 -07 000000512 INF: FPGA: Recv ZPIEZORD 33062
17-03-17 20:06:19.158 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.1 V.
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36736 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36733 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 6, negNoise = 5
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: After move to -0.176324, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:06:19.158 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:19.208 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 20:06:19.208 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:19.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:19.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:19.208 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:19.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:19.208 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:19.218 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:19.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:19.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:19.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:19.218 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:19.228 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:06:19.228 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:06:19.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:19.268 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:19.468 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:19.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:19.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:19.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) start.
17-03-17 20:06:19.508 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:19.508 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:19.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:06:19.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:06:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:19.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:06:19.608 -07 000000512 INF: Autofocus start
17-03-17 20:06:19.608 -07 000000512 INF: MeasureProfile start
17-03-17 20:06:19.608 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:19.608 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:19.618 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:19.618 -07 000000512 INF: MeasureProfile done
17-03-17 20:06:19.618 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:19.618 -07 000000512 INF: Autofocus finished
17-03-17 20:06:19.628 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:19.828 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:19.828 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:06:19.828 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176336057675149. ----------
17-03-17 20:06:19.828 -07 000000610 INF: Cycle	34	Tile	9	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:19.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37015, sync = True, waitForSettling = True)
17-03-17 20:06:19.838 -07 000000610 INF: Z Motor: Moving to -0.169444 mm, started at -0.176336 mm, distance = 6.89 um
17-03-17 20:06:19.838 -07 000000610 INF: FPGA: Xmit ZDACW 37015\n [Z Motor]
17-03-17 20:06:19.838 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:06:19.848 -07 000000610 INF: FPGA: 'ZDACW 37015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:19.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:19.848 -07 000000547 INF: FPGA: Recv ZDACR 37015
17-03-17 20:06:19.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:19.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:19.938 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.983999,
17-03-17 20:06:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.008 -07 000000512 INF: FPGA: Recv ZSGSRD 35662
17-03-17 20:06:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.018 -07 000000626 INF: FPGA: Recv ZSGSRD 35666
17-03-17 20:06:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.028 -07 000000475 INF: FPGA: Recv ZSGSRD 35667
17-03-17 20:06:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.038 -07 000000626 INF: FPGA: Recv ZSGSRD 35659
17-03-17 20:06:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.048 -07 000000459 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:06:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.058 -07 000000626 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:06:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35665
17-03-17 20:06:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.078 -07 000000459 INF: FPGA: Recv ZSGSRD 35667
17-03-17 20:06:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:06:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:20.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35667
17-03-17 20:06:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:20.108 -07 000000626 INF: FPGA: Recv ZPIEZORD 31610
17-03-17 20:06:20.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:20.118 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.0 V.
17-03-17 20:06:20.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35666 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35667 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35659 (-168.5 uncal um), Max = 35668 (-168.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:06:20.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35666, posNoise = 2, negNoise = 7
17-03-17 20:06:20.118 -07 000000610 INF: Z Motor: After move to -0.169444, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:20.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:06:20.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:20.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:20.118 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:20.118 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:20.118 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:20.118 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:20.118 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:20.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:20.118 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:06:20.118 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:20.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:20.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:20.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:06:20.128 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:20.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:20.128 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:20.138 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:06:20.138 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:06:20.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:06:20.138 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:06:20.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37192 150\n [Camera]
17-03-17 20:06:20.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:20.748 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:20.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:20.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:20.748 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:20.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:20.748 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:20.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:20.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) start.
17-03-17 20:06:20.758 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:20.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) start.
17-03-17 20:06:20.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37192 795
17-03-17 20:06:21.088 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:21.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:06:21.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:06:21.148 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:06:21.148 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:21.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:06:21.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:21.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:21.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:21.148 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:06:21.158 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:06:21.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:21.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:21.288 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:21.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:21.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:21.288 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:21.298 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:21.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:06:21.298 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:21.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:06:21.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:21.478 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:21.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37192 150' command took 2 ms to send, 1336 ms to get response, and 1341 ms overall
17-03-17 20:06:21.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:21.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169449302259181. ------
17-03-17 20:06:21.608 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:21.608 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17628 mm
17-03-17 20:06:21.608 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:21.608 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:06:21.608 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 20:06:21.608 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38508, sync = True, waitForSettling = False)
17-03-17 20:06:21.608 -07 000000459 INF: Z Motor: Moving to -0.176278 mm, started at -0.169449 mm, distance = -6.83 um
17-03-17 20:06:21.608 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:21.618 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:21.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:21.618 -07 000000448 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:06:21.628 -07 000000459 INF: FPGA: Xmit ZDACW 38508\n [Z Motor]
17-03-17 20:06:21.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:06:21.628 -07 000000561 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:21.628 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:21.628 -07 000000561 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:06:21.628 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:06:21.638 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:21.638 -07 000000459 INF: FPGA: 'ZDACW 38508' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:06:21.648 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:21.658 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:21.658 -07 000000618 INF: FPGA: Recv ZDACR 38508
17-03-17 20:06:21.668 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:21.668 -07 000000459 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:06:21.698 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:06:21.698 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:06:21.698 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:21.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:06:21.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:06:21.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:21.698 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:21.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:06:21.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 20:06:21.708 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:06:21.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:21.838 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:21.838 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:06:22.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:06:22.018 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:22.058 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:22.058 -07 000000593 INF: FPGA: Recv YRDPOS 137977
17-03-17 20:06:22.068 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:22.068 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:22.068 -07 000000561 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 20:06:22.068 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 20:06:23.018 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:23.018 -07 000000512 INF: FPGA: Recv YRDPOS 137977
17-03-17 20:06:23.028 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.028 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:23.048 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:23.048 -07 000000561 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:23.048 -07 000000561 INF: Y Motor: Moved to 67.3716 after 1438 ms (table move)
17-03-17 20:06:23.048 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176278 mm (DAC = 38508)
17-03-17 20:06:23.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.048 -07 000000561 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:06:23.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:23.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36723
17-03-17 20:06:23.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.068 -07 000000561 INF: FPGA: Recv ZSGSRD 36732
17-03-17 20:06:23.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.078 -07 000000561 INF: FPGA: Recv ZSGSRD 36733
17-03-17 20:06:23.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.088 -07 000000561 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:06:23.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.098 -07 000000486 INF: FPGA: Recv ZSGSRD 36732
17-03-17 20:06:23.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.108 -07 000000486 INF: FPGA: Recv ZSGSRD 36728
17-03-17 20:06:23.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.118 -07 000000593 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:06:23.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.128 -07 000000593 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:06:23.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:23.138 -07 000000593 INF: FPGA: Recv ZSGSRD 36730
17-03-17 20:06:23.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.148 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:23.148 -07 000000593 INF: FPGA: Recv ZPIEZORD 33042
17-03-17 20:06:23.158 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.2 V.
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36730 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36732 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36720 (-175.3 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36730, posNoise = 4, negNoise = 10
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: After move to -0.176278, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:06:23.158 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:23.208 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:06:23.208 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:23.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:23.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:23.208 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:23.208 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:23.208 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:23.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:23.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:23.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:23.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:23.218 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:23.228 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:06:23.228 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:06:23.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:23.278 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:23.478 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:23.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:23.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:23.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:06:23.518 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:23.518 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:23.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:06:23.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:06:23.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:23.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:23.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:06:23.618 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:23.618 -07 000000459 INF: Autofocus start
17-03-17 20:06:23.618 -07 000000459 INF: MeasureProfile start
17-03-17 20:06:23.618 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:23.628 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:23.628 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:23.628 -07 000000459 INF: MeasureProfile done
17-03-17 20:06:23.628 -07 000000459 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:06:23.628 -07 000000459 INF: Autofocus finished
17-03-17 20:06:23.828 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:23.828 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:23.828 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176284663978015. ----------
17-03-17 20:06:23.828 -07 000000610 INF: Cycle	34	Tile	10	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:23.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36988, sync = True, waitForSettling = True)
17-03-17 20:06:23.838 -07 000000610 INF: Z Motor: Moving to -0.169320 mm, started at -0.176285 mm, distance = 6.96 um
17-03-17 20:06:23.838 -07 000000610 INF: FPGA: Xmit ZDACW 36988\n [Z Motor]
17-03-17 20:06:23.838 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:06:23.848 -07 000000610 INF: FPGA: 'ZDACW 36988' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:23.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:23.848 -07 000000459 INF: FPGA: Recv ZDACR 36988
17-03-17 20:06:23.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:23.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:24.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.008 -07 000000618 INF: FPGA: Recv ZSGSRD 35643
17-03-17 20:06:24.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.018 -07 000000486 INF: FPGA: Recv ZSGSRD 35644
17-03-17 20:06:24.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.028 -07 000000593 INF: FPGA: Recv ZSGSRD 35646
17-03-17 20:06:24.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:06:24.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.058 -07 000000486 INF: FPGA: Recv ZSGSRD 35645
17-03-17 20:06:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.078 -07 000000486 INF: FPGA: Recv ZSGSRD 35651
17-03-17 20:06:24.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.098 -07 000000448 INF: FPGA: Recv ZSGSRD 35648
17-03-17 20:06:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:24.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35644
17-03-17 20:06:24.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35644
17-03-17 20:06:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:24.148 -07 000000547 INF: FPGA: Recv ZSGSRD 35649
17-03-17 20:06:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:24.158 -07 000000547 INF: FPGA: Recv ZPIEZORD 31610
17-03-17 20:06:24.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:24.168 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -8.9 V.
17-03-17 20:06:24.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35647 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35643 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:24.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35647, posNoise = 6, negNoise = 4
17-03-17 20:06:24.168 -07 000000610 INF: Z Motor: After move to -0.169320, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:24.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-17 20:06:24.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:24.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:24.168 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:24.168 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:24.168 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:24.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:24.168 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:24.168 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:24.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:24.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:24.168 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:24.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:24.178 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:24.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:24.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:24.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:24.188 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:06:24.188 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:06:24.188 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:06:24.188 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:24.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37165 150\n [Camera]
17-03-17 20:06:24.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:24.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:24.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:24.798 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:24.798 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:24.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:06:24.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:24.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:24.798 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:24.798 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:24.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:06:25.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:06:25.178 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:06:25.178 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:25.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:06:25.178 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:06:25.178 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:25.188 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:25.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:25.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:06:25.188 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:06:25.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37165 795
17-03-17 20:06:25.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:25.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:25.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:25.338 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:25.338 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:25.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) start.
17-03-17 20:06:25.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:25.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:25.338 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:25.338 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:25.338 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) start.
17-03-17 20:06:25.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:06:25.728 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:06:25.728 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:25.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:06:25.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:06:25.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:25.738 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:25.738 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:25.738 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:06:25.748 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:06:25.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:25.788 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:25.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37165 150' command took 2 ms to send, 1591 ms to get response, and 1598 ms overall
17-03-17 20:06:25.788 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.008536,
17-03-17 20:06:25.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:25.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169327242228488. ------
17-03-17 20:06:25.788 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17565 mm
17-03-17 20:06:25.788 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:25.808 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:26.718 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:26.718 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 901 ms to get response, and 925 ms overall
17-03-17 20:06:26.718 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:06:26.718 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 20:06:26.718 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38370, sync = True, waitForSettling = False)
17-03-17 20:06:26.718 -07 000000415 INF: Z Motor: Moving to -0.175647 mm, started at -0.169327 mm, distance = -6.32 um
17-03-17 20:06:26.738 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:26.748 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:26.748 -07 000000561 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:06:26.748 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:26.758 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 20:06:26.758 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:26.758 -07 000000415 INF: FPGA: Xmit ZDACW 38370\n [Z Motor]
17-03-17 20:06:26.758 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:26.758 -07 000000502 INF: Y Motor: Moving 1345 steps-23
17-03-17 20:06:26.758 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:06:26.768 -07 000000415 INF: FPGA: 'ZDACW 38370' command took 0 ms to send, 0 ms to get response, and 47 ms overall
17-03-17 20:06:26.768 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:26.778 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:26.778 -07 000000459 INF: FPGA: Recv ZDACR 38370
17-03-17 20:06:26.788 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:26.788 -07 000000415 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-17 20:06:26.938 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:26.938 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:06:27.138 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:06:27.138 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:06:27.178 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:27.178 -07 000000486 INF: FPGA: Recv YRDPOS 139683
17-03-17 20:06:27.188 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:27.188 -07 000000502 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:27.188 -07 000000502 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:06:27.188 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.841 mm, average velocity = 2.184 mm/sec
17-03-17 20:06:28.138 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:28.138 -07 000000415 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:06:28.148 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.148 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:28.168 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:28.168 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:28.168 -07 000000502 INF: Y Motor: Moved to 68.2051 after 1449 ms (table move)
17-03-17 20:06:28.168 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175647 mm (DAC = 38370)
17-03-17 20:06:28.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.168 -07 000000576 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:06:28.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:28.178 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.178 -07 000000626 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:06:28.188 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.188 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36632
17-03-17 20:06:28.198 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.198 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.198 -07 000000626 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:06:28.208 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.208 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.208 -07 000000576 INF: FPGA: Recv ZSGSRD 36632
17-03-17 20:06:28.218 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.218 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:06:28.228 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.228 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:06:28.238 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.238 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36634
17-03-17 20:06:28.248 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:06:28.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:28.258 -07 000000478 INF: FPGA: Recv ZSGSRD 36627
17-03-17 20:06:28.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.268 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:28.268 -07 000000576 INF: FPGA: Recv ZPIEZORD 32931
17-03-17 20:06:28.278 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.2 V.
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36630 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36630 (-174.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36627 (-174.7 uncal um), Max = 36634 (-174.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36630, posNoise = 4, negNoise = 3
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: After move to -0.175647, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:06:28.278 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:28.328 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2533 ms
17-03-17 20:06:28.328 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:28.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:28.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:28.328 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:28.328 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:28.328 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:28.328 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:28.338 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:28.338 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:28.338 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:28.338 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:28.348 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:06:28.348 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:06:28.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:28.398 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:28.598 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:28.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:28.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:28.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-17 20:06:28.638 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:28.638 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:28.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 20:06:28.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:06:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:06:28.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:06:28.738 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:28.738 -07 000000475 INF: Autofocus start
17-03-17 20:06:28.738 -07 000000475 INF: MeasureProfile start
17-03-17 20:06:28.738 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:28.748 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:28.748 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:28.748 -07 000000475 INF: MeasureProfile done
17-03-17 20:06:28.748 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:06:28.748 -07 000000475 INF: Autofocus finished
17-03-17 20:06:28.948 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:28.948 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:28.948 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175642242763839. ----------
17-03-17 20:06:28.948 -07 000000610 INF: Cycle	34	Tile	11	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:28.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36921, sync = True, waitForSettling = True)
17-03-17 20:06:28.958 -07 000000610 INF: Z Motor: Moving to -0.169014 mm, started at -0.175642 mm, distance = 6.63 um
17-03-17 20:06:28.958 -07 000000610 INF: FPGA: Xmit ZDACW 36921\n [Z Motor]
17-03-17 20:06:28.958 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:06:28.968 -07 000000610 INF: FPGA: 'ZDACW 36921' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:28.968 -07 000000502 INF: FPGA: Recv ZDACR 36921
17-03-17 20:06:28.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:28.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.128 -07 000000478 INF: FPGA: Recv ZSGSRD 35599
17-03-17 20:06:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.148 -07 000000486 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:06:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35602
17-03-17 20:06:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.168 -07 000000547 INF: FPGA: Recv ZSGSRD 35600
17-03-17 20:06:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35602
17-03-17 20:06:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35603
17-03-17 20:06:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.198 -07 000000547 INF: FPGA: Recv ZSGSRD 35596
17-03-17 20:06:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35596
17-03-17 20:06:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.218 -07 000000512 INF: FPGA: Recv ZSGSRD 35600
17-03-17 20:06:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:29.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35601
17-03-17 20:06:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:29.238 -07 000000626 INF: FPGA: Recv ZPIEZORD 31555
17-03-17 20:06:29.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:29.248 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -8.9 V.
17-03-17 20:06:29.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35600 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35596 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:29.248 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35600, posNoise = 4, negNoise = 4
17-03-17 20:06:29.248 -07 000000610 INF: Z Motor: After move to -0.169014, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:29.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 20:06:29.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:29.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:29.248 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:29.248 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:29.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:29.248 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:29.248 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:29.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:29.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:29.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:29.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:29.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:29.258 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:29.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:29.258 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:29.258 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:29.268 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:06:29.268 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:06:29.268 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:06:29.268 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:06:29.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37098 150\n [Camera]
17-03-17 20:06:29.468 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:29.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:29.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:29.878 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:29.878 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:29.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:06:29.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:29.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:29.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:29.888 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:29.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:06:30.078 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37098 795
17-03-17 20:06:30.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:30.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:06:30.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:06:30.278 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:30.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:06:30.288 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:06:30.288 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:30.288 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:30.288 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:06:30.288 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:30.298 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:06:30.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:30.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:30.418 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:30.418 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:30.418 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:06:30.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:30.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:30.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:30.428 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:30.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:06:30.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:30.608 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:30.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37098 150' command took 2 ms to send, 1339 ms to get response, and 1342 ms overall
17-03-17 20:06:30.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:30.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169025304257825. ------
17-03-17 20:06:30.738 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:30.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:06:30.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:06:30.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:30.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 20:06:30.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:06:30.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:30.838 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:30.838 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:30.838 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:06:30.838 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:06:30.848 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17562 mm
17-03-17 20:06:30.848 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:30.848 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:30.848 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 108 ms to get response, and 113 ms overall
17-03-17 20:06:30.848 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:30.848 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:06:30.848 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:06:30.858 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:31.438 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38365, sync = True, waitForSettling = False)
17-03-17 20:06:31.438 -07 000000448 INF: Z Motor: Moving to -0.175624 mm, started at -0.169025 mm, distance = -6.60 um
17-03-17 20:06:31.438 -07 000000448 INF: FPGA: Xmit ZDACW 38365\n [Z Motor]
17-03-17 20:06:31.968 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:06:31.968 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:31.968 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:06:31.968 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1110 ms to get response, and 1112 ms overall
17-03-17 20:06:31.968 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1100 ms to get response, and 1111 ms overall
17-03-17 20:06:31.968 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:31.968 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:31.968 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:31.968 -07 000000478 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:06:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:31.968 -07 000000448 INF: FPGA: 'ZDACW 38365' command took 0 ms to send, 521 ms to get response, and 527 ms overall
17-03-17 20:06:31.968 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:31.978 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:31.978 -07 000000561 INF: FPGA: Recv ZDACR 38365
17-03-17 20:06:31.988 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:06:31.988 -07 000000448 INF: Z Motor: MoveAbsStepped took 547 ms (did NOT wait for settling yet))
17-03-17 20:06:32.278 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.026244,
17-03-17 20:06:32.348 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:06:32.348 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 20:06:32.378 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:32.388 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:06:32.388 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:32.388 -07 000000478 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:32.388 -07 000000478 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:06:32.388 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-17 20:06:33.338 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:33.338 -07 000000618 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:06:33.348 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:33.348 -07 000000478 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:33.368 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:33.368 -07 000000478 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:33.368 -07 000000478 INF: Y Motor: Moved to 69.0269 after 2513 ms (table move)
17-03-17 20:06:33.368 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175624 mm (DAC = 38365)
17-03-17 20:06:33.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.368 -07 000000512 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:06:33.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:33.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.378 -07 000000478 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:06:33.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.388 -07 000000561 INF: FPGA: Recv ZSGSRD 36629
17-03-17 20:06:33.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.398 -07 000000478 INF: FPGA: Recv ZSGSRD 36621
17-03-17 20:06:33.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.408 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.408 -07 000000415 INF: FPGA: Recv ZSGSRD 36625
17-03-17 20:06:33.418 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.418 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.418 -07 000000478 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:06:33.428 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.428 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:06:33.438 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:06:33.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.448 -07 000000512 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:06:33.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:33.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36625
17-03-17 20:06:33.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.468 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:33.468 -07 000000512 INF: FPGA: Recv ZPIEZORD 32905
17-03-17 20:06:33.478 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.2 V.
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36628 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36628 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36621 (-174.7 uncal um), Max = 36633 (-174.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36628, posNoise = 5, negNoise = 7
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: After move to -0.175624, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: Settle wait time = 1933 ms, measure time = 104 ms (allowed 150 ms), total time = 2037 ms
17-03-17 20:06:33.478 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:33.528 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2676 ms
17-03-17 20:06:33.528 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:33.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:33.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:33.528 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:33.528 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:33.528 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:33.528 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:33.528 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:33.528 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:33.538 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:33.538 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:33.548 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:06:33.548 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:06:33.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:33.598 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:33.798 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:33.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:33.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:33.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) start.
17-03-17 20:06:33.838 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:33.838 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:33.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:06:33.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:06:33.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:33.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:33.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:06:33.938 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:33.938 -07 000000561 INF: Autofocus start
17-03-17 20:06:33.938 -07 000000561 INF: MeasureProfile start
17-03-17 20:06:33.938 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:33.948 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:33.948 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:33.948 -07 000000561 INF: MeasureProfile done
17-03-17 20:06:33.948 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:33.948 -07 000000561 INF: Autofocus finished
17-03-17 20:06:34.148 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:34.148 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:34.148 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175629394339555. ----------
17-03-17 20:06:34.158 -07 000000610 INF: Cycle	34	Tile	12	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:34.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36862, sync = True, waitForSettling = True)
17-03-17 20:06:34.158 -07 000000610 INF: Z Motor: Moving to -0.168743 mm, started at -0.175629 mm, distance = 6.89 um
17-03-17 20:06:34.158 -07 000000610 INF: FPGA: Xmit ZDACW 36862\n [Z Motor]
17-03-17 20:06:34.158 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:06:34.168 -07 000000610 INF: FPGA: 'ZDACW 36862' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:34.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:34.168 -07 000000618 INF: FPGA: Recv ZDACR 36862
17-03-17 20:06:34.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.328 -07 000000459 INF: FPGA: Recv ZSGSRD 35557
17-03-17 20:06:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35555
17-03-17 20:06:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.348 -07 000000502 INF: FPGA: Recv ZSGSRD 35568
17-03-17 20:06:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.358 -07 000000415 INF: FPGA: Recv ZSGSRD 35554
17-03-17 20:06:34.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35557
17-03-17 20:06:34.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:06:34.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:06:34.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.398 -07 000000415 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:06:34.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.408 -07 000000502 INF: FPGA: Recv ZSGSRD 35553
17-03-17 20:06:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:34.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35555
17-03-17 20:06:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:34.428 -07 000000561 INF: FPGA: Recv ZPIEZORD 31474
17-03-17 20:06:34.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:34.438 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.625 V. Piezo Error = -9.0 V.
17-03-17 20:06:34.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35558 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35557 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35553 (-167.9 uncal um), Max = 35568 (-167.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:34.438 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35558, posNoise = 10, negNoise = 5
17-03-17 20:06:34.438 -07 000000610 INF: Z Motor: After move to -0.168743, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:34.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:06:34.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:34.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:34.438 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:34.438 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:34.438 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:34.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:34.438 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:34.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:34.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:34.438 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:34.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:34.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:34.448 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:34.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:34.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:34.448 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:34.458 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:06:34.458 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:06:34.458 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:06:34.458 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:06:34.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37038 150\n [Camera]
17-03-17 20:06:34.668 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:35.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:35.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:35.078 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:35.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:35.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:35.078 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:35.088 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:35.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) start.
17-03-17 20:06:35.088 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:35.088 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) start.
17-03-17 20:06:35.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37038 795
17-03-17 20:06:35.418 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:35.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:06:35.468 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:06:35.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:35.468 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:35.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:06:35.478 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:06:35.478 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:35.478 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:35.478 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:06:35.478 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:06:35.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:35.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:35.618 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:35.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1143
17-03-17 20:06:35.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1143
17-03-17 20:06:35.618 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:35.628 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:35.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:06:35.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:35.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:06:35.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:35.808 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:35.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37038 150' command took 2 ms to send, 1332 ms to get response, and 1342 ms overall
17-03-17 20:06:35.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:35.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168755487347871. ------
17-03-17 20:06:35.928 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:35.928 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17510 mm
17-03-17 20:06:35.928 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:35.938 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:06:35.938 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 20:06:35.938 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:36.028 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:06:36.028 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:06:36.028 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:36.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:06:36.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:06:36.028 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:36.038 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:36.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:36.038 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-17 20:06:36.038 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 20:06:36.048 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38252, sync = True, waitForSettling = False)
17-03-17 20:06:36.048 -07 000000502 INF: Z Motor: Moving to -0.175106 mm, started at -0.168755 mm, distance = -6.35 um
17-03-17 20:06:36.048 -07 000000502 INF: FPGA: Xmit ZDACW 38252\n [Z Motor]
17-03-17 20:06:36.048 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:36.048 -07 000000448 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:06:36.048 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 107 ms to get response, and 115 ms overall
17-03-17 20:06:36.048 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:36.048 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:36.048 -07 000000561 INF: Y Motor: Moving 1353 steps-32
17-03-17 20:06:36.048 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 117 ms to get response, and 119 ms overall
17-03-17 20:06:36.048 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:06:36.058 -07 000000502 INF: FPGA: 'ZDACW 38252' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:36.058 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:36.068 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:36.068 -07 000000448 INF: FPGA: Recv ZDACR 38252
17-03-17 20:06:36.078 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:36.078 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:36.078 -07 000000502 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:06:36.278 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:36.278 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 224 ms overall
17-03-17 20:06:36.438 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:06:36.438 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 384 ms overall
17-03-17 20:06:36.468 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:36.468 -07 000000448 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:06:36.478 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:36.478 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:36.478 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:06:36.478 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.202 mm/sec
17-03-17 20:06:36.748 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:37.428 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:37.428 -07 000000448 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:06:37.438 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:37.438 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:37.458 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:37.458 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:37.458 -07 000000561 INF: Y Motor: Moved to 69.8628 after 1520 ms (table move)
17-03-17 20:06:37.458 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175106 mm (DAC = 38252)
17-03-17 20:06:37.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.458 -07 000000448 INF: FPGA: Recv ZSGSRD 36555
17-03-17 20:06:37.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:37.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.468 -07 000000561 INF: FPGA: Recv ZSGSRD 36546
17-03-17 20:06:37.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.478 -07 000000502 INF: FPGA: Recv ZSGSRD 36546
17-03-17 20:06:37.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.488 -07 000000448 INF: FPGA: Recv ZSGSRD 36545
17-03-17 20:06:37.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.498 -07 000000502 INF: FPGA: Recv ZSGSRD 36547
17-03-17 20:06:37.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.508 -07 000000448 INF: FPGA: Recv ZSGSRD 36556
17-03-17 20:06:37.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36553
17-03-17 20:06:37.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36553
17-03-17 20:06:37.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.538 -07 000000576 INF: FPGA: Recv ZSGSRD 36547
17-03-17 20:06:37.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:37.548 -07 000000561 INF: FPGA: Recv ZSGSRD 36553
17-03-17 20:06:37.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:37.558 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:37.558 -07 000000502 INF: FPGA: Recv ZPIEZORD 32840
17-03-17 20:06:37.568 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.2 V.
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36550 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36550 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36545 (-174.2 uncal um), Max = 36556 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36550, posNoise = 6, negNoise = 5
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: After move to -0.175106, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: Settle wait time = 1408 ms, measure time = 106 ms (allowed 150 ms), total time = 1514 ms
17-03-17 20:06:37.568 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:37.618 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1681 ms
17-03-17 20:06:37.618 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:37.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:37.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:37.618 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:37.618 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:37.618 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:37.618 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:37.618 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:06:37.618 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:37.628 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:37.628 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:37.628 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:06:37.628 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:06:37.638 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.005817,
17-03-17 20:06:37.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:37.698 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:37.898 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:37.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:37.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:37.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:06:37.938 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:37.938 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:37.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 306 ms overall
17-03-17 20:06:38.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 20:06:38.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:38.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:38.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:06:38.038 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:38.038 -07 000000415 INF: Autofocus start
17-03-17 20:06:38.038 -07 000000415 INF: MeasureProfile start
17-03-17 20:06:38.038 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:38.048 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:38.048 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:38.048 -07 000000415 INF: MeasureProfile done
17-03-17 20:06:38.048 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:06:38.048 -07 000000415 INF: Autofocus finished
17-03-17 20:06:38.248 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:38.248 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:38.248 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175128305792498. ----------
17-03-17 20:06:38.248 -07 000000610 INF: Cycle	34	Tile	13	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:38.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36766, sync = True, waitForSettling = True)
17-03-17 20:06:38.258 -07 000000610 INF: Z Motor: Moving to -0.168304 mm, started at -0.175128 mm, distance = 6.82 um
17-03-17 20:06:38.258 -07 000000610 INF: FPGA: Xmit ZDACW 36766\n [Z Motor]
17-03-17 20:06:38.258 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:06:38.268 -07 000000610 INF: FPGA: 'ZDACW 36766' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:38.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:38.268 -07 000000593 INF: FPGA: Recv ZDACR 36766
17-03-17 20:06:38.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:38.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35494
17-03-17 20:06:38.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:06:38.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.448 -07 000000415 INF: FPGA: Recv ZSGSRD 35487
17-03-17 20:06:38.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.458 -07 000000459 INF: FPGA: Recv ZSGSRD 35485
17-03-17 20:06:38.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.468 -07 000000561 INF: FPGA: Recv ZSGSRD 35495
17-03-17 20:06:38.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35494
17-03-17 20:06:38.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35483
17-03-17 20:06:38.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.498 -07 000000576 INF: FPGA: Recv ZSGSRD 35491
17-03-17 20:06:38.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35487
17-03-17 20:06:38.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:38.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:06:38.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:38.528 -07 000000459 INF: FPGA: Recv ZPIEZORD 31404
17-03-17 20:06:38.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:38.538 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.0 V.
17-03-17 20:06:38.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35489 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35489 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35483 (-167.4 uncal um), Max = 35495 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:06:38.538 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35489, posNoise = 6, negNoise = 6
17-03-17 20:06:38.538 -07 000000610 INF: Z Motor: After move to -0.168304, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:38.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:06:38.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:38.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:38.538 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:38.538 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:38.538 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:38.538 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:38.538 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:38.538 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:38.538 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:06:38.538 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:38.538 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:38.538 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:38.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:38.548 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:38.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:06:38.548 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:38.558 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:06:38.558 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:06:38.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:06:38.558 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:06:38.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36943 150\n [Camera]
17-03-17 20:06:38.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:39.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:39.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:39.178 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:39.178 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:39.178 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:06:39.178 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:39.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:39.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:39.178 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:39.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:06:39.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36943 795
17-03-17 20:06:39.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:39.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:06:39.578 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:06:39.578 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:39.578 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:39.578 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:06:39.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:06:39.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:06:39.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:39.578 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:39.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:06:39.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:06:39.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:06:39.718 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:39.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:39.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) start.
17-03-17 20:06:39.718 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:06:39.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:06:39.718 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:39.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:39.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) start.
17-03-17 20:06:39.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:39.908 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:39.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36943 150' command took 2 ms to send, 1332 ms to get response, and 1342 ms overall
17-03-17 20:06:39.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:39.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.16831221671009. ------
17-03-17 20:06:39.908 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17475 mm
17-03-17 20:06:39.908 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:39.908 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:39.908 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:06:39.908 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 20:06:39.908 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38174, sync = True, waitForSettling = False)
17-03-17 20:06:39.908 -07 000000459 INF: Z Motor: Moving to -0.174749 mm, started at -0.168312 mm, distance = -6.44 um
17-03-17 20:06:39.918 -07 000000459 INF: FPGA: Xmit ZDACW 38174\n [Z Motor]
17-03-17 20:06:39.918 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:39.918 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:39.918 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:06:39.928 -07 000000459 INF: FPGA: 'ZDACW 38174' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:39.928 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:39.928 -07 000000561 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:06:39.938 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:39.938 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:06:39.938 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:39.938 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:39.938 -07 000000415 INF: Y Motor: Moving 1344 steps-20
17-03-17 20:06:39.948 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:39.948 -07 000000486 INF: FPGA: Recv ZDACR 38174
17-03-17 20:06:39.958 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:39.958 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:39.958 -07 000000459 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:06:40.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:06:40.118 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:06:40.118 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:40.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:06:40.118 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:06:40.118 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:40.128 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:40.128 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:40.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:06:40.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:06:40.138 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:40.138 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-17 20:06:40.328 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 20:06:40.328 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:40.368 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:40.368 -07 000000593 INF: FPGA: Recv YRDPOS 144769
17-03-17 20:06:40.378 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:40.378 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:40.378 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:06:40.378 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 20:06:41.328 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:41.328 -07 000000561 INF: FPGA: Recv YRDPOS 144769
17-03-17 20:06:41.338 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:41.338 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:41.358 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:41.358 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:41.358 -07 000000415 INF: Y Motor: Moved to 70.6880 after 1443 ms (table move)
17-03-17 20:06:41.358 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174749 mm (DAC = 38174)
17-03-17 20:06:41.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.358 -07 000000415 INF: FPGA: Recv ZSGSRD 36489
17-03-17 20:06:41.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:06:41.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.368 -07 000000593 INF: FPGA: Recv ZSGSRD 36494
17-03-17 20:06:41.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.378 -07 000000593 INF: FPGA: Recv ZSGSRD 36496
17-03-17 20:06:41.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.388 -07 000000561 INF: FPGA: Recv ZSGSRD 36495
17-03-17 20:06:41.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36493
17-03-17 20:06:41.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.408 -07 000000593 INF: FPGA: Recv ZSGSRD 36492
17-03-17 20:06:41.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36496
17-03-17 20:06:41.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36492
17-03-17 20:06:41.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.438 -07 000000415 INF: FPGA: Recv ZSGSRD 36486
17-03-17 20:06:41.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:41.448 -07 000000561 INF: FPGA: Recv ZSGSRD 36498
17-03-17 20:06:41.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.458 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:41.458 -07 000000415 INF: FPGA: Recv ZPIEZORD 32767
17-03-17 20:06:41.468 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -8.3 V.
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36493 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36494 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36486 (-173.8 uncal um), Max = 36498 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36493, posNoise = 5, negNoise = 7
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: After move to -0.174749, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:06:41.468 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:41.518 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 20:06:41.518 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:41.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:41.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:41.518 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:41.518 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:41.518 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:41.518 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:41.518 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:41.518 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:41.528 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:41.528 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:41.538 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:06:41.538 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:06:41.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:41.588 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:41.748 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:41.788 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:41.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:41.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:41.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:06:41.828 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:41.828 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:41.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:06:41.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:06:41.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:41.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:06:41.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:06:41.928 -07 000000475 INF: Autofocus start
17-03-17 20:06:41.928 -07 000000475 INF: MeasureProfile start
17-03-17 20:06:41.928 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:41.928 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:41.938 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:41.938 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:41.938 -07 000000475 INF: MeasureProfile done
17-03-17 20:06:41.938 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:41.938 -07 000000475 INF: Autofocus finished
17-03-17 20:06:42.138 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:42.138 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:42.148 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174762125700418. ----------
17-03-17 20:06:42.148 -07 000000610 INF: Cycle	34	Tile	14	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:42.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36671, sync = True, waitForSettling = True)
17-03-17 20:06:42.148 -07 000000610 INF: Z Motor: Moving to -0.167869 mm, started at -0.174762 mm, distance = 6.89 um
17-03-17 20:06:42.148 -07 000000610 INF: FPGA: Xmit ZDACW 36671\n [Z Motor]
17-03-17 20:06:42.148 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:06:42.158 -07 000000610 INF: FPGA: 'ZDACW 36671' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:42.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:42.158 -07 000000512 INF: FPGA: Recv ZDACR 36671
17-03-17 20:06:42.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.318 -07 000000448 INF: FPGA: Recv ZSGSRD 35416
17-03-17 20:06:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35423
17-03-17 20:06:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.338 -07 000000448 INF: FPGA: Recv ZSGSRD 35425
17-03-17 20:06:42.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:06:42.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.358 -07 000000448 INF: FPGA: Recv ZSGSRD 35422
17-03-17 20:06:42.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.368 -07 000000415 INF: FPGA: Recv ZSGSRD 35423
17-03-17 20:06:42.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35420
17-03-17 20:06:42.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35422
17-03-17 20:06:42.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35420
17-03-17 20:06:42.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:42.408 -07 000000415 INF: FPGA: Recv ZSGSRD 35421
17-03-17 20:06:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:42.418 -07 000000448 INF: FPGA: Recv ZPIEZORD 31369
17-03-17 20:06:42.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:42.428 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -8.9 V.
17-03-17 20:06:42.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35421 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35422 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35416 (-167.0 uncal um), Max = 35425 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:42.428 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35421, posNoise = 4, negNoise = 5
17-03-17 20:06:42.428 -07 000000610 INF: Z Motor: After move to -0.167869, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:42.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:06:42.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:42.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:42.428 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:42.428 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:42.428 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:42.428 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:42.428 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:42.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:42.428 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:42.428 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:42.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:42.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:42.438 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:42.438 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:42.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:42.438 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:42.448 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:06:42.448 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:42.448 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:06:42.448 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:42.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36848 150\n [Camera]
17-03-17 20:06:42.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:43.008 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.997626,
17-03-17 20:06:43.058 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:43.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:43.058 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:43.058 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:43.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:06:43.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:43.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:43.058 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:43.058 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:43.058 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:06:43.248 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36848 795
17-03-17 20:06:43.398 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:43.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:06:43.438 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:06:43.438 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:43.438 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:43.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:06:43.438 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:06:43.438 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:43.438 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:43.438 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:06:43.448 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:06:43.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:43.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:43.598 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:43.598 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:43.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:06:43.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:43.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:43.598 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:43.598 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:43.598 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:06:43.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:43.788 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:43.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36848 150' command took 2 ms to send, 1334 ms to get response, and 1341 ms overall
17-03-17 20:06:43.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:43.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.16787537028445. ------
17-03-17 20:06:43.918 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17463 mm
17-03-17 20:06:43.918 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:43.918 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:43.918 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38149, sync = True, waitForSettling = False)
17-03-17 20:06:43.918 -07 000000576 INF: Z Motor: Moving to -0.174635 mm, started at -0.167875 mm, distance = -6.76 um
17-03-17 20:06:43.918 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:43.918 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:06:43.918 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 20:06:43.928 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:43.928 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:43.928 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:06:43.938 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:06:43.938 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:43.938 -07 000000576 INF: FPGA: Xmit ZDACW 38149\n [Z Motor]
17-03-17 20:06:43.938 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:06:43.938 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:43.938 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:06:43.948 -07 000000576 INF: FPGA: 'ZDACW 38149' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:06:43.948 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:43.958 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:43.968 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:43.968 -07 000000512 INF: FPGA: Recv ZDACR 38149
17-03-17 20:06:43.978 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:43.978 -07 000000576 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:06:43.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:06:43.998 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:06:43.998 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:43.998 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:06:43.998 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:06:43.998 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:43.998 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:43.998 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:43.998 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:06:44.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:06:44.148 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:44.148 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:06:44.328 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:06:44.328 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:06:44.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:44.368 -07 000000448 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:06:44.378 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:44.378 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:44.378 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:06:44.378 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-17 20:06:45.328 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:45.328 -07 000000561 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:06:45.338 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.338 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:45.358 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:45.358 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:45.358 -07 000000618 INF: Y Motor: Moved to 71.5186 after 1438 ms (table move)
17-03-17 20:06:45.358 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174635 mm (DAC = 38149)
17-03-17 20:06:45.358 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.368 -07 000000561 INF: FPGA: Recv ZSGSRD 36474
17-03-17 20:06:45.368 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:06:45.368 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.368 -07 000000561 INF: FPGA: Recv ZSGSRD 36475
17-03-17 20:06:45.378 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:06:45.378 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.378 -07 000000561 INF: FPGA: Recv ZSGSRD 36474
17-03-17 20:06:45.388 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.388 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.388 -07 000000486 INF: FPGA: Recv ZSGSRD 36476
17-03-17 20:06:45.398 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.398 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.398 -07 000000486 INF: FPGA: Recv ZSGSRD 36475
17-03-17 20:06:45.408 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.408 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.408 -07 000000561 INF: FPGA: Recv ZSGSRD 36479
17-03-17 20:06:45.418 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36476
17-03-17 20:06:45.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.428 -07 000000561 INF: FPGA: Recv ZSGSRD 36474
17-03-17 20:06:45.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.438 -07 000000561 INF: FPGA: Recv ZSGSRD 36468
17-03-17 20:06:45.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:45.448 -07 000000561 INF: FPGA: Recv ZSGSRD 36471
17-03-17 20:06:45.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.458 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:45.458 -07 000000561 INF: FPGA: Recv ZPIEZORD 32760
17-03-17 20:06:45.468 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.2 V.
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36474 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36474 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36468 (-173.7 uncal um), Max = 36479 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36474, posNoise = 5, negNoise = 6
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: After move to -0.174635, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:06:45.468 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:45.518 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 20:06:45.518 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:45.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:45.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:45.518 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:45.518 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:45.518 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:45.518 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:45.518 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:45.528 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:45.528 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:45.528 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:45.528 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:06:45.528 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:06:45.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:45.588 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:45.788 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:45.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:45.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:45.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) start.
17-03-17 20:06:45.828 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:45.828 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:45.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 292 ms overall
17-03-17 20:06:45.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:06:45.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:45.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:45.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:06:45.928 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:45.928 -07 000000415 INF: Autofocus start
17-03-17 20:06:45.928 -07 000000415 INF: MeasureProfile start
17-03-17 20:06:45.928 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:45.938 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:45.938 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:45.948 -07 000000415 INF: MeasureProfile done
17-03-17 20:06:45.948 -07 000000415 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:06:45.948 -07 000000415 INF: Autofocus finished
17-03-17 20:06:46.138 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:46.138 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:46.138 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174640065669724. ----------
17-03-17 20:06:46.138 -07 000000610 INF: Cycle	34	Tile	15	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:46.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36629, sync = True, waitForSettling = True)
17-03-17 20:06:46.148 -07 000000610 INF: Z Motor: Moving to -0.167677 mm, started at -0.174640 mm, distance = 6.96 um
17-03-17 20:06:46.148 -07 000000610 INF: FPGA: Xmit ZDACW 36629\n [Z Motor]
17-03-17 20:06:46.148 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:06:46.158 -07 000000610 INF: FPGA: 'ZDACW 36629' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:06:46.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:46.158 -07 000000415 INF: FPGA: Recv ZDACR 36629
17-03-17 20:06:46.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.318 -07 000000618 INF: FPGA: Recv ZSGSRD 35393
17-03-17 20:06:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:46.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.328 -07 000000561 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:06:46.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35393
17-03-17 20:06:46.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35390
17-03-17 20:06:46.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.358 -07 000000618 INF: FPGA: Recv ZSGSRD 35394
17-03-17 20:06:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35386
17-03-17 20:06:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35396
17-03-17 20:06:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35395
17-03-17 20:06:46.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:06:46.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:46.408 -07 000000502 INF: FPGA: Recv ZSGSRD 35387
17-03-17 20:06:46.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:46.418 -07 000000415 INF: FPGA: Recv ZPIEZORD 31294
17-03-17 20:06:46.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:46.428 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.0 V.
17-03-17 20:06:46.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35392 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35386 (-166.8 uncal um), Max = 35396 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:06:46.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35392, posNoise = 4, negNoise = 6
17-03-17 20:06:46.428 -07 000000610 INF: Z Motor: After move to -0.167677, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:46.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:06:46.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:46.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:46.428 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:46.428 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:46.428 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:46.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:46.428 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:46.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:06:46.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:46.428 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:46.428 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:46.428 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:46.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:46.438 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:46.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:46.438 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:46.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:06:46.448 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:06:46.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:06:46.448 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:06:46.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36805 150\n [Camera]
17-03-17 20:06:46.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:46.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:47.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:47.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:47.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:47.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:47.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:47.068 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:47.078 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:47.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) start.
17-03-17 20:06:47.078 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:47.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) start.
17-03-17 20:06:47.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36805 795
17-03-17 20:06:47.408 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:47.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:06:47.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:06:47.468 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:47.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:06:47.468 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:06:47.468 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:47.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:47.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:06:47.478 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:47.478 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:06:47.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:47.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:47.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:47.608 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:47.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:47.618 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:47.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:47.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:06:47.618 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:47.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:06:47.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:06:47.798 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:47.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36805 150' command took 2 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-17 20:06:47.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:47.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167689068132339. ------
17-03-17 20:06:47.808 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:47.808 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17353 mm
17-03-17 20:06:47.808 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:47.808 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:06:47.808 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:47.808 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 20:06:47.808 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37907, sync = True, waitForSettling = False)
17-03-17 20:06:47.928 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 20:06:47.928 -07 000000486 INF: Z Motor: Moving to -0.173527 mm, started at -0.167689 mm, distance = -5.84 um
17-03-17 20:06:47.928 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:47.938 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:47.938 -07 000000478 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:06:47.938 -07 000000576 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 124 ms overall
17-03-17 20:06:47.938 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:47.938 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:47.938 -07 000000576 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:06:47.948 -07 000000486 INF: FPGA: Xmit ZDACW 37907\n [Z Motor]
17-03-17 20:06:47.948 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:06:47.958 -07 000000486 INF: FPGA: 'ZDACW 37907' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:06:47.958 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:47.968 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:47.968 -07 000000547 INF: FPGA: Recv ZDACR 37907
17-03-17 20:06:47.978 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:47.978 -07 000000486 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:06:48.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:06:48.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:06:48.018 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:48.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:06:48.018 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:06:48.018 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:48.028 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:48.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:48.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 20:06:48.028 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:06:48.138 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:48.138 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-17 20:06:48.328 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:06:48.328 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:06:48.368 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.985358,
17-03-17 20:06:48.378 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:48.378 -07 000000415 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:06:48.388 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:06:48.388 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:48.388 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:06:48.388 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.131 mm/sec
17-03-17 20:06:49.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:49.338 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:06:49.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:49.348 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:49.368 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:49.368 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:49.368 -07 000000576 INF: Y Motor: Moved to 72.3491 after 1558 ms (table move)
17-03-17 20:06:49.368 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173527 mm (DAC = 37907)
17-03-17 20:06:49.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36308
17-03-17 20:06:49.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:06:49.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.378 -07 000000480 INF: FPGA: Recv ZSGSRD 36302
17-03-17 20:06:49.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.388 -07 000000478 INF: FPGA: Recv ZSGSRD 36300
17-03-17 20:06:49.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36304
17-03-17 20:06:49.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.408 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.408 -07 000000478 INF: FPGA: Recv ZSGSRD 36302
17-03-17 20:06:49.418 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.418 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36302
17-03-17 20:06:49.428 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.428 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.428 -07 000000478 INF: FPGA: Recv ZSGSRD 36298
17-03-17 20:06:49.438 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.438 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.438 -07 000000478 INF: FPGA: Recv ZSGSRD 36299
17-03-17 20:06:49.448 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.448 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.448 -07 000000478 INF: FPGA: Recv ZSGSRD 36301
17-03-17 20:06:49.458 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.458 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:49.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36304
17-03-17 20:06:49.468 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.468 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:49.468 -07 000000478 INF: FPGA: Recv ZPIEZORD 32527
17-03-17 20:06:49.478 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.4 V.
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36302 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36302 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36298 (-172.6 uncal um), Max = 36308 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36302, posNoise = 6, negNoise = 4
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: After move to -0.173527, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 20:06:49.478 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:49.528 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 20:06:49.528 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:49.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:49.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:49.528 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:49.528 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:49.528 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:49.528 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:49.528 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:49.528 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:49.538 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:49.538 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:49.548 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 20:06:49.548 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:06:49.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:49.598 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:49.798 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:49.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:49.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:49.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:06:49.838 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:49.838 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:49.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:06:49.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 20:06:49.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:49.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:49.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:06:49.938 -07 000000561 INF: Autofocus start
17-03-17 20:06:49.938 -07 000000561 INF: MeasureProfile start
17-03-17 20:06:49.938 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:49.938 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:49.948 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:49.948 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:49.948 -07 000000561 INF: MeasureProfile done
17-03-17 20:06:49.948 -07 000000561 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:06:49.948 -07 000000561 INF: Autofocus finished
17-03-17 20:06:50.148 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:50.148 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:50.148 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173535101181341. ----------
17-03-17 20:06:50.148 -07 000000610 INF: Cycle	34	Tile	16	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:50.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36457, sync = True, waitForSettling = True)
17-03-17 20:06:50.158 -07 000000610 INF: Z Motor: Moving to -0.166889 mm, started at -0.173535 mm, distance = 6.65 um
17-03-17 20:06:50.158 -07 000000610 INF: FPGA: Xmit ZDACW 36457\n [Z Motor]
17-03-17 20:06:50.158 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:06:50.168 -07 000000610 INF: FPGA: 'ZDACW 36457' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:50.168 -07 000000561 INF: FPGA: Recv ZDACR 36457
17-03-17 20:06:50.178 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:50.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.328 -07 000000561 INF: FPGA: Recv ZSGSRD 35269
17-03-17 20:06:50.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:50.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35272
17-03-17 20:06:50.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.348 -07 000000478 INF: FPGA: Recv ZSGSRD 35269
17-03-17 20:06:50.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35269
17-03-17 20:06:50.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35271
17-03-17 20:06:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35271
17-03-17 20:06:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35271
17-03-17 20:06:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.398 -07 000000618 INF: FPGA: Recv ZSGSRD 35270
17-03-17 20:06:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.408 -07 000000593 INF: FPGA: Recv ZSGSRD 35265
17-03-17 20:06:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:50.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35271
17-03-17 20:06:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:50.428 -07 000000618 INF: FPGA: Recv ZPIEZORD 31168
17-03-17 20:06:50.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:50.438 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.0 V.
17-03-17 20:06:50.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35270 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35270 (-166.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35265 (-166.0 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:06:50.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35270, posNoise = 2, negNoise = 5
17-03-17 20:06:50.438 -07 000000610 INF: Z Motor: After move to -0.166889, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:50.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:06:50.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:50.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:50.438 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:50.438 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:50.438 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:50.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:50.438 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:50.438 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:50.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:06:50.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:50.438 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:50.438 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:50.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:50.438 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:50.448 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:50.448 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:50.448 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:06:50.448 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:06:50.458 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:06:50.458 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:06:50.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36634 150\n [Camera]
17-03-17 20:06:50.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:51.068 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:51.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:51.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:51.068 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:51.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:06:51.068 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:51.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:51.078 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:51.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:51.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) start.
17-03-17 20:06:51.268 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36634 795
17-03-17 20:06:51.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:51.448 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:06:51.448 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:06:51.448 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:51.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1053102128, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:06:51.458 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:06:51.458 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:51.458 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:51.458 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:06:51.458 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:51.468 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:06:51.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:51.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:51.608 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:51.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:51.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) start.
17-03-17 20:06:51.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:51.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:51.618 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:51.618 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:51.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) start.
17-03-17 20:06:51.748 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:51.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:51.798 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:51.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36634 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:06:51.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:51.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166905314251044. ------
17-03-17 20:06:51.808 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:51.808 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17334 mm
17-03-17 20:06:51.808 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:51.808 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:51.808 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37866, sync = True, waitForSettling = False)
17-03-17 20:06:51.808 -07 000000415 INF: Z Motor: Moving to -0.173339 mm, started at -0.166905 mm, distance = -6.43 um
17-03-17 20:06:51.808 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:06:51.808 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 20:06:51.818 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:51.818 -07 000000415 INF: FPGA: Xmit ZDACW 37866\n [Z Motor]
17-03-17 20:06:51.818 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:06:51.828 -07 000000415 INF: FPGA: 'ZDACW 37866' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:06:51.828 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:51.838 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:51.838 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:06:51.848 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:51.848 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:06:51.848 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:51.848 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:51.848 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:06:51.848 -07 000000512 INF: FPGA: Recv ZDACR 37866
17-03-17 20:06:51.858 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:06:51.858 -07 000000415 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:06:51.858 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:51.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1123946656, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:06:51.998 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:06:51.998 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:51.998 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:52.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1088524392, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:06:52.008 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:06:52.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:52.008 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:06:52.008 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:06:52.008 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:06:52.028 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:52.028 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:06:52.228 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:06:52.228 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:06:52.268 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:52.268 -07 000000486 INF: FPGA: Recv YRDPOS 149863
17-03-17 20:06:52.278 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:52.278 -07 000000618 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:52.278 -07 000000618 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 20:06:52.278 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.174 mm/sec
17-03-17 20:06:53.228 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:53.228 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:06:53.238 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.238 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:53.258 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:53.258 -07 000000618 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:06:53.258 -07 000000618 INF: Y Motor: Moved to 73.1758 after 1444 ms (table move)
17-03-17 20:06:53.258 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173339 mm (DAC = 37866)
17-03-17 20:06:53.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36275
17-03-17 20:06:53.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 20:06:53.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36278
17-03-17 20:06:53.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:53.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36274
17-03-17 20:06:53.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36279
17-03-17 20:06:53.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.298 -07 000000415 INF: FPGA: Recv ZSGSRD 36279
17-03-17 20:06:53.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.308 -07 000000512 INF: FPGA: Recv ZSGSRD 36276
17-03-17 20:06:53.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36273
17-03-17 20:06:53.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.328 -07 000000618 INF: FPGA: Recv ZSGSRD 36268
17-03-17 20:06:53.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.338 -07 000000486 INF: FPGA: Recv ZSGSRD 36277
17-03-17 20:06:53.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:53.348 -07 000000486 INF: FPGA: Recv ZSGSRD 36276
17-03-17 20:06:53.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.358 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:53.358 -07 000000486 INF: FPGA: Recv ZPIEZORD 32498
17-03-17 20:06:53.368 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.4 V.
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36276 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36276 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36268 (-172.4 uncal um), Max = 36279 (-172.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36276, posNoise = 3, negNoise = 8
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: After move to -0.173339, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:06:53.368 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:53.418 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:06:53.418 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:53.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:53.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:53.418 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:53.418 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:53.418 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:53.418 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:53.418 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:53.418 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:53.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:53.428 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:53.438 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:06:53.438 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:06:53.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:53.488 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:53.688 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:53.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:53.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:53.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-17 20:06:53.728 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:53.728 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:53.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 20:06:53.738 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.990831,
17-03-17 20:06:53.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:06:53.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:53.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:06:53.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:06:53.838 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:53.838 -07 000000478 INF: Autofocus start
17-03-17 20:06:53.838 -07 000000478 INF: MeasureProfile start
17-03-17 20:06:53.838 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:53.848 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:06:53.848 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:53.848 -07 000000478 INF: MeasureProfile done
17-03-17 20:06:53.848 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:06:53.848 -07 000000478 INF: Autofocus finished
17-03-17 20:06:54.048 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:54.048 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:54.048 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173368071665655. ----------
17-03-17 20:06:54.048 -07 000000610 INF: Cycle	34	Tile	17	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:54.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36399, sync = True, waitForSettling = True)
17-03-17 20:06:54.058 -07 000000610 INF: Z Motor: Moving to -0.166624 mm, started at -0.173368 mm, distance = 6.74 um
17-03-17 20:06:54.058 -07 000000610 INF: FPGA: Xmit ZDACW 36399\n [Z Motor]
17-03-17 20:06:54.058 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:06:54.068 -07 000000610 INF: FPGA: 'ZDACW 36399' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:54.068 -07 000000459 INF: FPGA: Recv ZDACR 36399
17-03-17 20:06:54.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35228
17-03-17 20:06:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.238 -07 000000459 INF: FPGA: Recv ZSGSRD 35233
17-03-17 20:06:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35224
17-03-17 20:06:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:06:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.268 -07 000000547 INF: FPGA: Recv ZSGSRD 35228
17-03-17 20:06:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.278 -07 000000459 INF: FPGA: Recv ZSGSRD 35227
17-03-17 20:06:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:06:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35228
17-03-17 20:06:54.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35226
17-03-17 20:06:54.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:54.318 -07 000000459 INF: FPGA: Recv ZSGSRD 35225
17-03-17 20:06:54.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:54.328 -07 000000486 INF: FPGA: Recv ZPIEZORD 31110
17-03-17 20:06:54.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:54.338 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.1 V.
17-03-17 20:06:54.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35228 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35224 (-165.7 uncal um), Max = 35233 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:54.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35228, posNoise = 5, negNoise = 4
17-03-17 20:06:54.338 -07 000000610 INF: Z Motor: After move to -0.166624, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:54.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:06:54.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:54.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:54.338 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:54.338 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:54.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:54.338 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:54.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:54.338 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:54.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:54.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:54.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:54.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:54.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:54.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:54.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:06:54.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:54.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:06:54.358 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:06:54.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:06:54.358 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:06:54.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36575 150\n [Camera]
17-03-17 20:06:54.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:06:54.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:54.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:54.968 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:54.968 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:54.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:06:54.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:54.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:54.978 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:54.978 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:54.978 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:06:55.168 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36575 795
17-03-17 20:06:55.308 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:55.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:06:55.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:06:55.348 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:55.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:06:55.348 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:06:55.348 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:55.358 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:55.358 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:06:55.358 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:06:55.358 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:06:55.508 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:06:55.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:06:55.508 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:55.508 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:55.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:06:55.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:06:55.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:06:55.518 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:55.518 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:55.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:06:55.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:55.698 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:55.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36575 150' command took 2 ms to send, 1329 ms to get response, and 1342 ms overall
17-03-17 20:06:55.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:55.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.16663549734109. ------
17-03-17 20:06:55.828 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:55.828 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17315 mm
17-03-17 20:06:55.828 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:55.828 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:06:55.828 -07 000000486 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 20:06:55.828 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37825, sync = True, waitForSettling = False)
17-03-17 20:06:55.828 -07 000000478 INF: Z Motor: Moving to -0.173152 mm, started at -0.166635 mm, distance = -6.52 um
17-03-17 20:06:55.838 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:55.838 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:06:55.838 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:55.838 -07 000000608 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:06:55.848 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:55.848 -07 000000486 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:55.848 -07 000000486 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:55.848 -07 000000486 INF: Y Motor: Moving 1355 steps-35
17-03-17 20:06:55.848 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:55.858 -07 000000478 INF: FPGA: Xmit ZDACW 37825\n [Z Motor]
17-03-17 20:06:55.858 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:06:55.868 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:55.868 -07 000000478 INF: FPGA: 'ZDACW 37825' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:06:55.878 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:55.878 -07 000000626 INF: FPGA: Recv ZDACR 37825
17-03-17 20:06:55.888 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:55.888 -07 000000478 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:06:55.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:06:55.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:06:55.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:55.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:06:55.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:06:55.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:55.918 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:55.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:06:55.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:06:55.928 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:06:56.048 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:06:56.048 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:06:56.238 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:06:56.238 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:06:56.288 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:56.288 -07 000000478 INF: FPGA: Recv YRDPOS 151567
17-03-17 20:06:56.298 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:06:56.298 -07 000000486 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:56.298 -07 000000486 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:06:56.298 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 20:06:56.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:06:56.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:06:57.248 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:57.248 -07 000000480 INF: FPGA: Recv YRDPOS 151567
17-03-17 20:06:57.258 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:57.258 -07 000000486 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:57.268 -07 000000486 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:06:57.268 -07 000000486 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:06:57.268 -07 000000486 INF: Y Motor: Moved to 74.0073 after 1437 ms (table move)
17-03-17 20:06:57.268 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173152 mm (DAC = 37825)
17-03-17 20:06:57.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.278 -07 000000593 INF: FPGA: Recv ZSGSRD 36245
17-03-17 20:06:57.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:06:57.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36247
17-03-17 20:06:57.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36244
17-03-17 20:06:57.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36240
17-03-17 20:06:57.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36245
17-03-17 20:06:57.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.328 -07 000000478 INF: FPGA: Recv ZSGSRD 36242
17-03-17 20:06:57.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36243
17-03-17 20:06:57.348 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.348 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36244
17-03-17 20:06:57.358 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.358 -07 000000478 INF: FPGA: Recv ZSGSRD 36245
17-03-17 20:06:57.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.368 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:57.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36243
17-03-17 20:06:57.378 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.378 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:57.378 -07 000000478 INF: FPGA: Recv ZPIEZORD 32464
17-03-17 20:06:57.388 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.4 V.
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36244 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36244 (-172.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36240 (-172.3 uncal um), Max = 36247 (-172.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36244, posNoise = 3, negNoise = 4
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: After move to -0.173152, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:06:57.388 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:06:57.428 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:06:57.428 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:06:57.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:57.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:57.428 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:57.428 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:57.438 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:06:57.438 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:57.438 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:57.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:06:57.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:06:57.438 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:06:57.448 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:06:57.448 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:06:57.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:06:57.498 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:06:57.698 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:06:57.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:06:57.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:06:57.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) start.
17-03-17 20:06:57.728 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:06:57.738 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:06:57.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:06:57.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1053102128, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:06:57.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:57.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:06:57.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:06:57.838 -07 000000561 INF: Autofocus start
17-03-17 20:06:57.838 -07 000000561 INF: MeasureProfile start
17-03-17 20:06:57.838 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:57.848 -07 000000561 INF: MeasureProfile done
17-03-17 20:06:57.848 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:06:57.848 -07 000000561 INF: Autofocus finished
17-03-17 20:06:57.858 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:57.858 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-17 20:06:57.858 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:06:58.058 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:06:58.058 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:06:58.058 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173162496877119. ----------
17-03-17 20:06:58.068 -07 000000610 INF: Cycle	34	Tile	18	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:06:58.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36322, sync = True, waitForSettling = True)
17-03-17 20:06:58.068 -07 000000610 INF: Z Motor: Moving to -0.166271 mm, started at -0.173162 mm, distance = 6.89 um
17-03-17 20:06:58.068 -07 000000610 INF: FPGA: Xmit ZDACW 36322\n [Z Motor]
17-03-17 20:06:58.068 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:06:58.078 -07 000000610 INF: FPGA: 'ZDACW 36322' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:06:58.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:58.078 -07 000000478 INF: FPGA: Recv ZDACR 36322
17-03-17 20:06:58.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:06:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35172
17-03-17 20:06:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35172
17-03-17 20:06:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35178
17-03-17 20:06:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.268 -07 000000561 INF: FPGA: Recv ZSGSRD 35166
17-03-17 20:06:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35180
17-03-17 20:06:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.288 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-17 20:06:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35175
17-03-17 20:06:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.308 -07 000000512 INF: FPGA: Recv ZSGSRD 35177
17-03-17 20:06:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.318 -07 000000618 INF: FPGA: Recv ZSGSRD 35173
17-03-17 20:06:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:06:58.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35172
17-03-17 20:06:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:06:58.338 -07 000000478 INF: FPGA: Recv ZPIEZORD 31028
17-03-17 20:06:58.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:06:58.348 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.1 V.
17-03-17 20:06:58.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35174 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35173 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35166 (-165.4 uncal um), Max = 35180 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:06:58.348 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35174, posNoise = 6, negNoise = 8
17-03-17 20:06:58.348 -07 000000610 INF: Z Motor: After move to -0.166271, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:06:58.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:06:58.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:06:58.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:06:58.348 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:06:58.348 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:06:58.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:06:58.348 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:06:58.348 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:06:58.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:06:58.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:06:58.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:06:58.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:06:58.348 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:06:58.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:06:58.358 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:06:58.358 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:06:58.358 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:06:58.368 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:06:58.368 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:06:58.368 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:06:58.368 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:06:58.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36499 150\n [Camera]
17-03-17 20:06:58.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:06:58.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:06:58.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:06:58.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:58.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:06:58.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:06:58.978 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:58.988 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:58.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) start.
17-03-17 20:06:58.988 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:58.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) start.
17-03-17 20:06:59.098 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.007176,
17-03-17 20:06:59.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36499 795
17-03-17 20:06:59.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:06:59.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1072183512, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:06:59.378 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:06:59.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:59.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:59.378 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:06:59.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1107605776, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:06:59.378 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:06:59.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:59.388 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:59.388 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:06:59.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:06:59.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:06:59.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:06:59.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:06:59.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:06:59.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:06:59.528 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:06:59.528 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:06:59.538 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:06:59.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:06:59.708 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:06:59.708 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:06:59.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36499 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-17 20:06:59.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:06:59.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166288589885435. ------
17-03-17 20:06:59.718 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17264 mm
17-03-17 20:06:59.718 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:06:59.718 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:06:59.838 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:06:59.838 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 20:06:59.838 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:06:59.838 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37713, sync = True, waitForSettling = False)
17-03-17 20:06:59.838 -07 000000475 INF: Z Motor: Moving to -0.172639 mm, started at -0.166289 mm, distance = -6.35 um
17-03-17 20:06:59.838 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:06:59.838 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 20:06:59.848 -07 000000475 INF: FPGA: Xmit ZDACW 37713\n [Z Motor]
17-03-17 20:06:59.848 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:06:59.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:06:59.858 -07 000000475 INF: FPGA: 'ZDACW 37713' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:06:59.858 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:06:59.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:06:59.868 -07 000000415 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:06:59.868 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:06:59.868 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:06:59.868 -07 000000415 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:06:59.868 -07 000000626 INF: FPGA: Recv ZDACR 37713
17-03-17 20:06:59.878 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:06:59.878 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:06:59.878 -07 000000475 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 20:06:59.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:06:59.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:06:59.928 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:59.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:06:59.928 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:06:59.928 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:06:59.938 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:06:59.938 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:06:59.938 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 20:06:59.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:07:00.038 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:00.038 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:07:00.248 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:07:00.248 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:07:00.278 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:00.278 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:07:00.288 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:00.288 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:00.288 -07 000000415 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 20:07:00.288 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.196 mm/sec
17-03-17 20:07:01.238 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:01.238 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:07:01.248 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:01.248 -07 000000415 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:01.258 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:01.258 -07 000000415 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:01.258 -07 000000415 INF: Y Motor: Moved to 74.8315 after 1418 ms (table move)
17-03-17 20:07:01.258 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172639 mm (DAC = 37713)
17-03-17 20:07:01.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:07:01.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:01.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:07:01.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:01.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36157
17-03-17 20:07:01.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:01.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.298 -07 000000486 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:07:01.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:01.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:07:01.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:01.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:01.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:07:01.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:01.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:02.278 -07 000000547 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:07:02.278 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:02.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 931 ms to get response, and 940 ms overall
17-03-17 20:07:02.278 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:02.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:02.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:07:02.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:07:02.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:02.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:07:02.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:02.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:02.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:07:02.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:02.338 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:02.338 -07 000000547 INF: FPGA: Recv ZPIEZORD 32375
17-03-17 20:07:02.348 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.755 V. Piezo Error = -8.4 V.
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36163 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36154 (-171.7 uncal um), Max = 36167 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36163, posNoise = 4, negNoise = 9
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: After move to -0.172639, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: Settle wait time = 1423 ms, measure time = 1081 ms (allowed 150 ms), total time = 2504 ms
17-03-17 20:07:02.348 -07 000000561 INF: Z Motor: Warning: Actual position measuring time = 1081 ms, longer than max expected time of 150 ms
17-03-17 20:07:02.348 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2628 ms
17-03-17 20:07:02.348 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:02.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:02.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:02.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:02.348 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:02.348 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:02.348 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:02.358 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:02.358 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:02.358 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:02.358 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:02.358 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:07:02.358 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:07:02.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:02.408 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:02.608 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:02.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:02.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:02.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:07:02.648 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:02.648 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:02.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 20:07:02.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:07:02.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:02.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:02.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:07:02.748 -07 000000478 INF: Autofocus start
17-03-17 20:07:02.748 -07 000000478 INF: MeasureProfile start
17-03-17 20:07:02.748 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:02.748 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:02.758 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:02.758 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:02.758 -07 000000478 INF: MeasureProfile done
17-03-17 20:07:02.758 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:07:02.758 -07 000000478 INF: Autofocus finished
17-03-17 20:07:02.958 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:02.958 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:02.968 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172642135693636. ----------
17-03-17 20:07:02.968 -07 000000610 INF: Cycle	34	Tile	19	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:02.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36227, sync = True, waitForSettling = True)
17-03-17 20:07:02.968 -07 000000610 INF: Z Motor: Moving to -0.165837 mm, started at -0.172642 mm, distance = 6.81 um
17-03-17 20:07:02.968 -07 000000610 INF: FPGA: Xmit ZDACW 36227\n [Z Motor]
17-03-17 20:07:02.968 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:07:02.978 -07 000000610 INF: FPGA: 'ZDACW 36227' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:02.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:02.978 -07 000000478 INF: FPGA: Recv ZDACR 36227
17-03-17 20:07:02.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:02.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35107
17-03-17 20:07:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.148 -07 000000626 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:07:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:07:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35112
17-03-17 20:07:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35106
17-03-17 20:07:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35101
17-03-17 20:07:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:07:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35110
17-03-17 20:07:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35101
17-03-17 20:07:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:03.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:07:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:03.238 -07 000000626 INF: FPGA: Recv ZPIEZORD 30949
17-03-17 20:07:03.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:03.248 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.528 V. Piezo Error = -9.2 V.
17-03-17 20:07:03.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35107 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35108 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35101 (-165.0 uncal um), Max = 35112 (-165.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:07:03.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35107, posNoise = 5, negNoise = 6
17-03-17 20:07:03.248 -07 000000610 INF: Z Motor: After move to -0.165837, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:03.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:07:03.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:03.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:03.258 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:03.258 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:03.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:03.258 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:03.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:03.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:03.258 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:03.258 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:03.258 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:03.258 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:03.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:03.258 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:03.258 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:07:03.258 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:03.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:07:03.268 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:03.268 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:07:03.268 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:07:03.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36404 150\n [Camera]
17-03-17 20:07:03.478 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:03.888 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:03.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:03.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:03.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:03.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:07:03.888 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:03.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:03.888 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:03.888 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:03.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:07:04.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36404 795
17-03-17 20:07:04.228 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:04.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:07:04.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:07:04.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:04.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:07:04.288 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:07:04.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:04.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:04.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:07:04.288 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:04.298 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:07:04.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:04.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:04.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:04.428 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:04.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:07:04.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:04.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:04.428 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:04.428 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:04.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:07:04.458 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.015368,
17-03-17 20:07:04.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:04.618 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:04.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36404 150' command took 2 ms to send, 1333 ms to get response, and 1342 ms overall
17-03-17 20:07:04.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:07:04.828 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:07:04.828 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:04.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:07:04.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:07:04.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:04.838 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:04.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:04.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:07:04.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:07:04.848 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:07:04.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:07:04.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:07:04.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:07:04.928 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:07:04.928 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:07:04.928 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 20:07:04.938 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:04.938 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:07:05.438 -07 000000415 INF: FPGA: Recv EMIN
17-03-17 20:07:05.438 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:07:05.438 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:07:05.438 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 20:07:05.448 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:05.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:05.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165858167671937. ------
17-03-17 20:07:05.448 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:05.448 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14034 mm
17-03-17 20:07:05.448 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:05.448 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:05.458 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:05.458 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:05.458 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:07:05.458 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 20:07:05.458 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30657, sync = True, waitForSettling = False)
17-03-17 20:07:05.458 -07 000000561 INF: Z Motor: Moving to -0.140339 mm, started at -0.165858 mm, distance = 25.52 um
17-03-17 20:07:05.468 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:05.468 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:07:05.478 -07 000000561 INF: FPGA: Xmit ZDACW 30657\n [Z Motor]
17-03-17 20:07:05.478 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:07:05.478 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:05.478 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:07:05.478 -07 000000478 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:07:05.478 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:07:05.488 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:07:05.488 -07 000000561 INF: FPGA: 'ZDACW 30657' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:07:05.498 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:05.498 -07 000000547 INF: FPGA: Recv ZDACR 30657
17-03-17 20:07:05.508 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:05.508 -07 000000561 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:07:05.658 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:05.658 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:06.748 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:07.108 -07 000000480 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 20:07:07.118 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1632 ms overall
17-03-17 20:07:07.118 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:07:07.118 -07 000000478 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:07:07.118 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1634 ms, distance = 14.919 mm, average velocity = 9.130 mm/sec
17-03-17 20:07:09.818 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.037119,
17-03-17 20:07:09.968 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:09.968 -07 000000448 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:07:09.978 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:09.978 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:09.998 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:09.998 -07 000000478 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:07:09.998 -07 000000478 INF: Y Motor: Moved to 59.9111 after 4547 ms
17-03-17 20:07:10.008 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140339 mm (DAC = 30657)
17-03-17 20:07:10.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.008 -07 000000478 INF: FPGA: Recv ZSGSRD 31131
17-03-17 20:07:10.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:10.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.018 -07 000000478 INF: FPGA: Recv ZSGSRD 31134
17-03-17 20:07:10.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.028 -07 000000486 INF: FPGA: Recv ZSGSRD 31145
17-03-17 20:07:10.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.038 -07 000000478 INF: FPGA: Recv ZSGSRD 31134
17-03-17 20:07:10.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.048 -07 000000478 INF: FPGA: Recv ZSGSRD 31129
17-03-17 20:07:10.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.058 -07 000000486 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:07:10.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.068 -07 000000486 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:07:10.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.078 -07 000000478 INF: FPGA: Recv ZSGSRD 31135
17-03-17 20:07:10.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.088 -07 000000478 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:07:10.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.098 -07 000000486 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:07:10.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.108 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:10.108 -07 000000478 INF: FPGA: Recv ZPIEZORD 26789
17-03-17 20:07:10.118 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.678 V. Piezo Error = -9.6 V.
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31136 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31136 (-139.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31129 (-139.5 uncal um), Max = 31145 (-139.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31136, posNoise = 9, negNoise = 7
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: After move to -0.140339, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: Settle wait time = 4550 ms, measure time = 109 ms (allowed 150 ms), total time = 4659 ms
17-03-17 20:07:10.118 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:10.168 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-17 20:07:10.168 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:10.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:10.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:10.168 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:10.168 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:10.168 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:10.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:10.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:10.168 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:07:10.198 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:07:10.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:10.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:07:10.198 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:10.208 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:07:10.208 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:07:10.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:10.268 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:10.458 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:10.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:10.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:10.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:07:10.498 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:10.508 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:10.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 20:07:10.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:07:10.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:10.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:10.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:07:10.608 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:10.608 -07 000000626 INF: Image SNR check: start
17-03-17 20:07:10.608 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:10.618 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:10.618 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:10.628 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=60.38]
17-03-17 20:07:10.628 -07 000000626 INF: Autofocus start
17-03-17 20:07:10.628 -07 000000626 INF: MeasureProfile start
17-03-17 20:07:10.638 -07 000000626 INF: MeasureProfile done
17-03-17 20:07:10.638 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:07:10.638 -07 000000626 INF: Autofocus finished
17-03-17 20:07:10.818 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:10.818 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 20:07:10.818 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140347621257004. ----------
17-03-17 20:07:10.818 -07 000000610 INF: Cycle	34	Tile	1	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:10.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29152, sync = True, waitForSettling = True)
17-03-17 20:07:10.828 -07 000000610 INF: Z Motor: Moving to -0.133449 mm, started at -0.140348 mm, distance = 6.90 um
17-03-17 20:07:10.828 -07 000000610 INF: FPGA: Xmit ZDACW 29152\n [Z Motor]
17-03-17 20:07:10.828 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:07:10.838 -07 000000610 INF: FPGA: 'ZDACW 29152' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:10.838 -07 000000478 INF: FPGA: Recv ZDACR 29152
17-03-17 20:07:10.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:10.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:10.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:10.998 -07 000000478 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:07:11.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:11.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.008 -07 000000478 INF: FPGA: Recv ZSGSRD 30066
17-03-17 20:07:11.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.018 -07 000000478 INF: FPGA: Recv ZSGSRD 30060
17-03-17 20:07:11.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.028 -07 000000478 INF: FPGA: Recv ZSGSRD 30061
17-03-17 20:07:11.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.038 -07 000000478 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:07:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.048 -07 000000478 INF: FPGA: Recv ZSGSRD 30061
17-03-17 20:07:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.058 -07 000000478 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:07:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.068 -07 000000478 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:07:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.078 -07 000000478 INF: FPGA: Recv ZSGSRD 30062
17-03-17 20:07:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:11.088 -07 000000478 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:07:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:11.098 -07 000000561 INF: FPGA: Recv ZPIEZORD 25631
17-03-17 20:07:11.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:11.108 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.7 V.
17-03-17 20:07:11.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30063 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30063 (-132.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30060 (-132.6 uncal um), Max = 30066 (-132.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:07:11.108 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30063, posNoise = 3, negNoise = 3
17-03-17 20:07:11.108 -07 000000610 INF: Z Motor: After move to -0.133449, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:11.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:07:11.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:11.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:11.118 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:11.118 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:11.118 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:11.118 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:11.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:11.118 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:11.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:07:11.118 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:07:11.118 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 5 ms.
17-03-17 20:07:11.118 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:11.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:07:11.128 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:11.138 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:07:11.138 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 28 ms.
17-03-17 20:07:11.138 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 20:07:11.138 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:11.148 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:07:11.148 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:11.158 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:07:11.158 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 20:07:11.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29328 150\n [Camera]
17-03-17 20:07:11.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:11.748 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:11.768 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:11.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:11.768 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:11.768 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:11.768 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:07:11.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:11.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:11.768 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:11.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:11.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:07:11.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29328 795
17-03-17 20:07:12.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:12.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:07:12.148 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:07:12.148 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:12.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:07:12.158 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:07:12.158 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:12.158 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:12.158 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:07:12.158 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:12.168 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:07:12.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:12.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:12.308 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:12.308 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:12.308 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:07:12.308 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:12.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:12.308 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:12.308 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:12.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:07:12.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:12.498 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:12.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29328 150' command took 2 ms to send, 1334 ms to get response, and 1341 ms overall
17-03-17 20:07:12.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:12.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133454441628895. ------
17-03-17 20:07:12.498 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13993 mm
17-03-17 20:07:12.498 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:12.508 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:12.508 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30568, sync = True, waitForSettling = False)
17-03-17 20:07:12.508 -07 000000486 INF: Z Motor: Moving to -0.139931 mm, started at -0.133454 mm, distance = -6.48 um
17-03-17 20:07:12.508 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:12.508 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:07:12.508 -07 000000448 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:07:12.518 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:12.638 -07 000000486 INF: FPGA: Xmit ZDACW 30568\n [Z Motor]
17-03-17 20:07:12.638 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:07:12.648 -07 000000486 INF: FPGA: 'ZDACW 30568' command took 125 ms to send, 0 ms to get response, and 136 ms overall
17-03-17 20:07:12.648 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:12.648 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:07:12.658 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-17 20:07:12.658 -07 000000448 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:12.658 -07 000000448 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:12.658 -07 000000448 INF: Y Motor: Moving 1330 steps2
17-03-17 20:07:12.658 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:12.668 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:12.668 -07 000000561 INF: FPGA: Recv ZDACR 30568
17-03-17 20:07:12.678 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:12.678 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:12.678 -07 000000486 INF: Z Motor: MoveAbsStepped took 167 ms (did NOT wait for settling yet))
17-03-17 20:07:12.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:07:12.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:07:12.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:12.698 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:07:12.698 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:07:12.698 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:12.708 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:07:12.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 20:07:12.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:07:12.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:07:12.858 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:12.858 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 20:07:13.048 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 20:07:13.048 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:07:13.078 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:13.088 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:07:13.088 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:07:13.088 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:13.088 -07 000000448 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:07:13.088 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 20:07:14.038 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:14.038 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:07:14.048 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:14.048 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:14.068 -07 000000448 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:14.068 -07 000000448 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:14.068 -07 000000448 INF: Y Motor: Moved to 60.7329 after 1558 ms (table move)
17-03-17 20:07:14.068 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139931 mm (DAC = 30568)
17-03-17 20:07:14.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.068 -07 000000415 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:07:14.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:14.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.078 -07 000000478 INF: FPGA: Recv ZSGSRD 31067
17-03-17 20:07:14.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.088 -07 000000475 INF: FPGA: Recv ZSGSRD 31064
17-03-17 20:07:14.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.098 -07 000000561 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:07:14.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.108 -07 000000415 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:07:14.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.118 -07 000000478 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:07:14.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.128 -07 000000502 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:07:14.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.138 -07 000000448 INF: FPGA: Recv ZSGSRD 31069
17-03-17 20:07:14.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.148 -07 000000415 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:07:14.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:14.158 -07 000000561 INF: FPGA: Recv ZSGSRD 31066
17-03-17 20:07:14.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.168 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:14.168 -07 000000415 INF: FPGA: Recv ZPIEZORD 27004
17-03-17 20:07:14.178 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -9.0 V.
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31071 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31070 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31064 (-139.1 uncal um), Max = 31079 (-139.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31071, posNoise = 8, negNoise = 7
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: After move to -0.139931, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: Settle wait time = 1562 ms, measure time = 105 ms (allowed 150 ms), total time = 1667 ms
17-03-17 20:07:14.178 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:14.228 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 20:07:14.228 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:14.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:14.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:14.228 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:14.228 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:14.228 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:14.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:14.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:14.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:14.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:14.238 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:14.248 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:07:14.248 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:07:14.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:14.288 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:14.488 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:14.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:14.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:14.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:07:14.528 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:14.528 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:14.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:07:14.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:07:14.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:14.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:14.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:07:14.728 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:14.728 -07 000000415 INF: Autofocus start
17-03-17 20:07:14.728 -07 000000415 INF: MeasureProfile start
17-03-17 20:07:14.728 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:14.738 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:14.738 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:14.738 -07 000000415 INF: MeasureProfile done
17-03-17 20:07:14.738 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:07:14.738 -07 000000415 INF: Autofocus finished
17-03-17 20:07:14.938 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:14.938 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:14.938 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13993004746779. ----------
17-03-17 20:07:14.938 -07 000000610 INF: Cycle	34	Tile	2	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:14.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29092, sync = True, waitForSettling = True)
17-03-17 20:07:14.948 -07 000000610 INF: Z Motor: Moving to -0.133175 mm, started at -0.139930 mm, distance = 6.76 um
17-03-17 20:07:14.948 -07 000000610 INF: FPGA: Xmit ZDACW 29092\n [Z Motor]
17-03-17 20:07:14.948 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 20:07:14.958 -07 000000610 INF: FPGA: 'ZDACW 29092' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:14.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:14.958 -07 000000626 INF: FPGA: Recv ZDACR 29092
17-03-17 20:07:14.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:14.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:07:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.128 -07 000000486 INF: FPGA: Recv ZSGSRD 30020
17-03-17 20:07:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.138 -07 000000448 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:07:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.148 -07 000000618 INF: FPGA: Recv ZSGSRD 30024
17-03-17 20:07:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:07:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.178 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.011254,
17-03-17 20:07:15.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:07:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:15.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.208 -07 000000486 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:07:15.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:15.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30024
17-03-17 20:07:15.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:15.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.238 -07 000000561 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:07:15.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:15.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:15.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:07:15.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:15.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:15.268 -07 000000448 INF: FPGA: Recv ZPIEZORD 25638
17-03-17 20:07:15.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:15.278 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.6 V.
17-03-17 20:07:15.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30021 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30021 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30016 (-132.4 uncal um), Max = 30025 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:07:15.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30021, posNoise = 4, negNoise = 5
17-03-17 20:07:15.278 -07 000000610 INF: Z Motor: After move to -0.133175, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:15.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 20:07:15.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:15.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:15.278 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:15.278 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:15.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:15.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:15.278 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:15.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:15.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:15.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:15.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:15.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:15.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:15.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:15.288 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:15.288 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:15.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:07:15.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:07:15.298 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:07:15.298 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:07:15.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29269 150\n [Camera]
17-03-17 20:07:15.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:15.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:15.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:15.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:15.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:15.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:15.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:15.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:15.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:07:15.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:15.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:07:16.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29269 795
17-03-17 20:07:16.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:16.318 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:07:16.318 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:07:16.318 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:16.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:07:16.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:07:16.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:16.318 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:16.318 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:07:16.328 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:07:16.338 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:07:16.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:16.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:16.458 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:16.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:16.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:16.458 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:16.468 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:16.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:07:16.468 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:16.468 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:07:16.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:16.648 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:16.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29269 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-17 20:07:16.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:16.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133184624718941. ------
17-03-17 20:07:16.648 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:16.648 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13994 mm
17-03-17 20:07:16.648 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:16.648 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:07:16.648 -07 000000448 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:07:16.778 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30570, sync = True, waitForSettling = False)
17-03-17 20:07:16.778 -07 000000415 INF: Z Motor: Moving to -0.139940 mm, started at -0.133185 mm, distance = -6.76 um
17-03-17 20:07:16.778 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:16.778 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:16.778 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:16.778 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 128 ms overall
17-03-17 20:07:16.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:16.778 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:07:16.788 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 20:07:16.788 -07 000000448 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:16.788 -07 000000415 INF: FPGA: Xmit ZDACW 30570\n [Z Motor]
17-03-17 20:07:16.788 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:07:16.788 -07 000000448 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:16.788 -07 000000448 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:07:16.798 -07 000000415 INF: FPGA: 'ZDACW 30570' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:07:16.798 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:16.808 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:16.818 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:16.818 -07 000000561 INF: FPGA: Recv ZDACR 30570
17-03-17 20:07:16.828 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:16.828 -07 000000415 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:07:16.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:07:16.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:07:16.858 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:16.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:07:16.868 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:07:16.868 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:16.868 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:16.868 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:07:16.868 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 20:07:16.868 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:07:16.998 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:16.998 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 20:07:17.178 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:07:17.178 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:07:17.218 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:17.218 -07 000000608 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:07:17.228 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:17.228 -07 000000448 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:17.228 -07 000000448 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:07:17.228 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-17 20:07:18.178 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:18.178 -07 000000608 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:07:18.188 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:18.188 -07 000000448 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:18.208 -07 000000448 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:18.208 -07 000000448 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:18.208 -07 000000448 INF: Y Motor: Moved to 61.5640 after 1553 ms (table move)
17-03-17 20:07:18.208 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139940 mm (DAC = 30570)
17-03-17 20:07:18.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.208 -07 000000618 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:07:18.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:18.218 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.218 -07 000000459 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:07:18.228 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.228 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.228 -07 000000448 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:07:18.238 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.238 -07 000000626 INF: FPGA: Recv ZSGSRD 31082
17-03-17 20:07:18.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.248 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.248 -07 000000608 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:07:18.258 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.258 -07 000000448 INF: FPGA: Recv ZSGSRD 31074
17-03-17 20:07:18.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.268 -07 000000626 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:07:18.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.278 -07 000000608 INF: FPGA: Recv ZSGSRD 31067
17-03-17 20:07:18.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.288 -07 000000626 INF: FPGA: Recv ZSGSRD 31070
17-03-17 20:07:18.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:18.298 -07 000000448 INF: FPGA: Recv ZSGSRD 31074
17-03-17 20:07:18.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.308 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:18.308 -07 000000502 INF: FPGA: Recv ZPIEZORD 27104
17-03-17 20:07:18.318 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.665 V. Piezo Error = -8.7 V.
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31075 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31074 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31067 (-139.1 uncal um), Max = 31084 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31075, posNoise = 9, negNoise = 8
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: After move to -0.139940, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:07:18.318 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:18.368 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 20:07:18.368 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:18.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:18.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:18.368 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:18.368 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:18.368 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:18.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:18.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:18.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:18.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:18.378 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:18.378 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:07:18.378 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:07:18.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:18.438 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:18.638 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:18.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:18.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:18.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:07:18.678 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:18.678 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:18.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 292 ms overall
17-03-17 20:07:18.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:07:18.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:18.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:18.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:07:18.778 -07 000000561 INF: Autofocus start
17-03-17 20:07:18.778 -07 000000561 INF: MeasureProfile start
17-03-17 20:07:18.778 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:18.778 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:18.788 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:18.788 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:18.788 -07 000000561 INF: MeasureProfile done
17-03-17 20:07:18.788 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:07:18.788 -07 000000561 INF: Autofocus finished
17-03-17 20:07:18.988 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:18.988 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:18.988 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139955744316357. ----------
17-03-17 20:07:18.988 -07 000000610 INF: Cycle	34	Tile	3	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:18.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29078, sync = True, waitForSettling = True)
17-03-17 20:07:18.998 -07 000000610 INF: Z Motor: Moving to -0.133111 mm, started at -0.139956 mm, distance = 6.85 um
17-03-17 20:07:18.998 -07 000000610 INF: FPGA: Xmit ZDACW 29078\n [Z Motor]
17-03-17 20:07:18.998 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:07:19.008 -07 000000610 INF: FPGA: 'ZDACW 29078' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:19.008 -07 000000626 INF: FPGA: Recv ZDACR 29078
17-03-17 20:07:19.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.168 -07 000000415 INF: FPGA: Recv ZSGSRD 30008
17-03-17 20:07:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.178 -07 000000486 INF: FPGA: Recv ZSGSRD 30011
17-03-17 20:07:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30010
17-03-17 20:07:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.198 -07 000000475 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:07:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.208 -07 000000415 INF: FPGA: Recv ZSGSRD 30007
17-03-17 20:07:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:07:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30011
17-03-17 20:07:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:07:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.248 -07 000000626 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:07:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:19.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30010
17-03-17 20:07:19.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:19.268 -07 000000415 INF: FPGA: Recv ZPIEZORD 25682
17-03-17 20:07:19.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:19.278 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.5 V.
17-03-17 20:07:19.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30010 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30010 (-132.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30007 (-132.3 uncal um), Max = 30015 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:07:19.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30010, posNoise = 5, negNoise = 3
17-03-17 20:07:19.278 -07 000000610 INF: Z Motor: After move to -0.133111, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:19.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:07:19.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:19.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:19.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:19.278 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:19.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:19.278 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:19.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:19.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:19.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:07:19.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:19.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:19.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:19.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:07:19.278 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:19.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:19.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:19.298 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:07:19.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:07:19.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:07:19.298 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:07:19.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29255 150\n [Camera]
17-03-17 20:07:19.498 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:19.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:19.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:19.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:19.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:19.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:07:19.918 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:19.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:19.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:19.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:19.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:07:20.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29255 795
17-03-17 20:07:20.248 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:20.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:07:20.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:07:20.288 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:20.288 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:20.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:07:20.288 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:07:20.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:20.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:20.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:07:20.298 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:07:20.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:20.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:20.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:20.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:20.458 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:20.458 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:20.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:07:20.458 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:20.458 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:20.458 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:07:20.578 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.955391,
17-03-17 20:07:20.638 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:20.638 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:20.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29255 150' command took 2 ms to send, 1329 ms to get response, and 1341 ms overall
17-03-17 20:07:20.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:20.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133113958385381. ------
17-03-17 20:07:20.648 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:20.648 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13919 mm
17-03-17 20:07:20.648 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:20.648 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:07:20.648 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:07:20.648 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30405, sync = True, waitForSettling = False)
17-03-17 20:07:20.648 -07 000000480 INF: Z Motor: Moving to -0.139185 mm, started at -0.133114 mm, distance = -6.07 um
17-03-17 20:07:20.648 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:20.658 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:20.658 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:20.658 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:07:20.668 -07 000000618 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:07:20.668 -07 000000618 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:20.668 -07 000000480 INF: FPGA: Xmit ZDACW 30405\n [Z Motor]
17-03-17 20:07:20.668 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:07:20.668 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:20.668 -07 000000618 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:07:20.678 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:20.678 -07 000000480 INF: FPGA: 'ZDACW 30405' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:07:20.688 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:20.698 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:20.698 -07 000000547 INF: FPGA: Recv ZDACR 30405
17-03-17 20:07:20.708 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:20.708 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:07:20.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:07:20.858 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:07:20.858 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:20.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:07:20.858 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:07:20.858 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:20.858 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:20.868 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:20.868 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:07:20.868 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:07:20.878 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:20.878 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:07:21.058 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:07:21.058 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:07:21.098 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:21.098 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:07:21.108 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:21.108 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:21.108 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:07:21.108 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 20:07:21.748 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:21.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:22.058 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:22.058 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:07:22.068 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.068 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:22.088 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:22.088 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:22.088 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1434 ms (table move)
17-03-17 20:07:22.088 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139185 mm (DAC = 30405)
17-03-17 20:07:22.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30959
17-03-17 20:07:22.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:22.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30957
17-03-17 20:07:22.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.108 -07 000000576 INF: FPGA: Recv ZSGSRD 30958
17-03-17 20:07:22.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.118 -07 000000576 INF: FPGA: Recv ZSGSRD 30960
17-03-17 20:07:22.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30953
17-03-17 20:07:22.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30954
17-03-17 20:07:22.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.148 -07 000000486 INF: FPGA: Recv ZSGSRD 30958
17-03-17 20:07:22.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.158 -07 000000486 INF: FPGA: Recv ZSGSRD 30952
17-03-17 20:07:22.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30953
17-03-17 20:07:22.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:22.178 -07 000000576 INF: FPGA: Recv ZSGSRD 30960
17-03-17 20:07:22.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.188 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:22.188 -07 000000576 INF: FPGA: Recv ZPIEZORD 26955
17-03-17 20:07:22.198 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30956 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30960 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30956, posNoise = 4, negNoise = 4
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: After move to -0.139185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:07:22.198 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:22.248 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:07:22.248 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:22.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:22.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:22.248 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:22.248 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:22.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:22.248 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:22.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:22.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:22.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:22.258 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:22.258 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:07:22.258 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:07:22.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:22.308 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:22.508 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:22.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:22.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:22.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:07:22.548 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:22.548 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:22.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:07:22.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:07:22.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:22.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:22.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:07:22.648 -07 000000547 INF: Autofocus start
17-03-17 20:07:22.648 -07 000000547 INF: MeasureProfile start
17-03-17 20:07:22.648 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:22.648 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:22.658 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:22.658 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:22.658 -07 000000547 INF: MeasureProfile done
17-03-17 20:07:22.658 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:07:22.658 -07 000000547 INF: Autofocus finished
17-03-17 20:07:22.858 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:22.858 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:22.868 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139191263071487. ----------
17-03-17 20:07:22.868 -07 000000610 INF: Cycle	34	Tile	4	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:22.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28913, sync = True, waitForSettling = True)
17-03-17 20:07:22.868 -07 000000610 INF: Z Motor: Moving to -0.132355 mm, started at -0.139191 mm, distance = 6.84 um
17-03-17 20:07:22.868 -07 000000610 INF: FPGA: Xmit ZDACW 28913\n [Z Motor]
17-03-17 20:07:22.868 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:07:22.878 -07 000000610 INF: FPGA: 'ZDACW 28913' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:22.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:22.878 -07 000000618 INF: FPGA: Recv ZDACR 28913
17-03-17 20:07:22.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:22.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:07:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:07:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.058 -07 000000415 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:07:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:07:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.078 -07 000000547 INF: FPGA: Recv ZSGSRD 29894
17-03-17 20:07:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.088 -07 000000459 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:07:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29887
17-03-17 20:07:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.108 -07 000000415 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:07:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.118 -07 000000547 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:07:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:23.128 -07 000000415 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:07:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:23.138 -07 000000618 INF: FPGA: Recv ZPIEZORD 25566
17-03-17 20:07:23.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:23.148 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.5 V.
17-03-17 20:07:23.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29894 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29894 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29887 (-131.5 uncal um), Max = 29898 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:23.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29894, posNoise = 4, negNoise = 7
17-03-17 20:07:23.148 -07 000000610 INF: Z Motor: After move to -0.132355, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:23.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:07:23.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:23.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:23.148 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:23.148 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:23.148 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:23.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:23.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:23.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:23.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:23.148 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:23.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:23.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:23.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:23.158 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:23.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:23.158 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:23.168 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:07:23.168 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:23.168 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:07:23.168 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:23.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29089 150\n [Camera]
17-03-17 20:07:23.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:23.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:23.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:23.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:23.778 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:23.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:07:23.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:23.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:23.788 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:23.788 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:23.788 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:07:23.978 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29089 795
17-03-17 20:07:24.118 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:24.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:07:24.178 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:07:24.178 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:24.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:07:24.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:07:24.178 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:24.188 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:24.188 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:07:24.188 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:24.198 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:07:24.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:24.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:24.318 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:24.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:24.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:07:24.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:24.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:24.318 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:24.318 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:24.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:07:24.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:24.508 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:24.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29089 150' command took 2 ms to send, 1337 ms to get response, and 1342 ms overall
17-03-17 20:07:24.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:24.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132368749776937. ------
17-03-17 20:07:24.638 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:24.638 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13899 mm
17-03-17 20:07:24.638 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:24.638 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:07:24.638 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:07:24.648 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:24.718 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:07:24.718 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:07:24.718 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:24.718 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:07:24.718 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:07:24.718 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:24.718 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:24.728 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:07:24.728 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:07:24.728 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:07:24.738 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:24.738 -07 000000561 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:07:24.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 84 ms to get response, and 97 ms overall
17-03-17 20:07:24.738 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:24.738 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30363, sync = True, waitForSettling = False)
17-03-17 20:07:24.738 -07 000000475 INF: Z Motor: Moving to -0.138993 mm, started at -0.132369 mm, distance = -6.62 um
17-03-17 20:07:24.738 -07 000000475 INF: FPGA: Xmit ZDACW 30363\n [Z Motor]
17-03-17 20:07:24.738 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 94 ms to get response, and 101 ms overall
17-03-17 20:07:24.738 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 20:07:24.738 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:24.738 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:07:24.748 -07 000000475 INF: FPGA: 'ZDACW 30363' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:24.748 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:24.758 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:24.768 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:24.768 -07 000000561 INF: FPGA: Recv ZDACR 30363
17-03-17 20:07:24.778 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:24.778 -07 000000475 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:07:24.958 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:24.958 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 218 ms overall
17-03-17 20:07:25.128 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:07:25.128 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 382 ms overall
17-03-17 20:07:25.158 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:25.158 -07 000000478 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:07:25.168 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:25.168 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:25.168 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:07:25.168 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.837 mm, average velocity = 2.191 mm/sec
17-03-17 20:07:25.938 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.979922,
17-03-17 20:07:26.118 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:26.118 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:07:26.128 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:26.128 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:26.148 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:26.148 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:26.148 -07 000000626 INF: Y Motor: Moved to 63.2241 after 1505 ms (table move)
17-03-17 20:07:26.148 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138993 mm (DAC = 30363)
17-03-17 20:07:26.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.148 -07 000000512 INF: FPGA: Recv ZSGSRD 30928
17-03-17 20:07:26.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:26.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.158 -07 000000502 INF: FPGA: Recv ZSGSRD 30921
17-03-17 20:07:26.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30920
17-03-17 20:07:26.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30932
17-03-17 20:07:26.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:07:26.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.198 -07 000000626 INF: FPGA: Recv ZSGSRD 30931
17-03-17 20:07:26.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.208 -07 000000448 INF: FPGA: Recv ZSGSRD 30928
17-03-17 20:07:26.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30923
17-03-17 20:07:26.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30923
17-03-17 20:07:26.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:26.238 -07 000000626 INF: FPGA: Recv ZSGSRD 30922
17-03-17 20:07:26.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.248 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:26.248 -07 000000475 INF: FPGA: Recv ZPIEZORD 26922
17-03-17 20:07:26.258 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -8.8 V.
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30926 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30926 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30920 (-138.2 uncal um), Max = 30933 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30926, posNoise = 7, negNoise = 6
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: After move to -0.138993, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: Settle wait time = 1410 ms, measure time = 105 ms (allowed 150 ms), total time = 1515 ms
17-03-17 20:07:26.258 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:26.308 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1666 ms
17-03-17 20:07:26.308 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:26.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:26.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:26.308 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:26.308 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:26.308 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:26.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:26.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:26.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:26.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:26.318 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:26.328 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:07:26.328 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:07:26.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:26.378 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:07:26.578 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:07:26.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:07:26.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:26.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:07:26.618 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:26.618 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:26.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:07:26.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:07:26.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:26.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:26.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:07:26.718 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:26.718 -07 000000561 INF: Autofocus start
17-03-17 20:07:26.718 -07 000000561 INF: MeasureProfile start
17-03-17 20:07:26.718 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:26.728 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:26.728 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:26.738 -07 000000561 INF: MeasureProfile done
17-03-17 20:07:26.738 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:07:26.738 -07 000000561 INF: Autofocus finished
17-03-17 20:07:26.748 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:26.928 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:26.928 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:26.928 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138998536707234. ----------
17-03-17 20:07:26.928 -07 000000610 INF: Cycle	34	Tile	5	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:26.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28887, sync = True, waitForSettling = True)
17-03-17 20:07:26.938 -07 000000610 INF: Z Motor: Moving to -0.132236 mm, started at -0.138999 mm, distance = 6.76 um
17-03-17 20:07:26.938 -07 000000610 INF: FPGA: Xmit ZDACW 28887\n [Z Motor]
17-03-17 20:07:26.938 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:07:26.948 -07 000000610 INF: FPGA: 'ZDACW 28887' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:26.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:26.948 -07 000000415 INF: FPGA: Recv ZDACR 28887
17-03-17 20:07:26.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:26.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.108 -07 000000626 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:07:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:07:27.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.128 -07 000000626 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:07:27.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.138 -07 000000415 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:07:27.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:07:27.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.158 -07 000000608 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:07:27.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:07:27.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.178 -07 000000608 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:07:27.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.188 -07 000000478 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:07:27.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:27.198 -07 000000608 INF: FPGA: Recv ZSGSRD 29872
17-03-17 20:07:27.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:27.208 -07 000000478 INF: FPGA: Recv ZPIEZORD 25526
17-03-17 20:07:27.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:27.218 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 20:07:27.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29875 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29874 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29879 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:07:27.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29875, posNoise = 4, negNoise = 4
17-03-17 20:07:27.218 -07 000000610 INF: Z Motor: After move to -0.132236, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:27.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:07:27.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:27.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:27.218 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:27.218 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:27.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:27.218 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:27.218 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:27.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:27.218 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:27.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:27.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:27.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:27.228 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:27.228 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:27.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:27.228 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:27.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:07:27.238 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:07:27.248 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:07:27.248 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:07:27.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29063 150\n [Camera]
17-03-17 20:07:27.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:27.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:27.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:27.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:27.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:27.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:27.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:27.868 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:27.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:07:27.868 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:27.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:07:28.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29063 795
17-03-17 20:07:28.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:28.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:07:28.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:07:28.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:28.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:07:28.238 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:07:28.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:28.248 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:28.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:28.248 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:07:28.258 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:07:28.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:28.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:28.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:28.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:28.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:28.398 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:28.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:28.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:07:28.408 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:28.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:07:28.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:28.588 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:28.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29063 150' command took 2 ms to send, 1334 ms to get response, and 1341 ms overall
17-03-17 20:07:28.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:28.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132246689746244. ------
17-03-17 20:07:28.588 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:28.588 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13874 mm
17-03-17 20:07:28.588 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:28.598 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:28.598 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:07:28.598 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:07:28.598 -07 000000475 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:07:28.718 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:28.718 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30308, sync = True, waitForSettling = False)
17-03-17 20:07:28.718 -07 000000593 INF: Z Motor: Moving to -0.138741 mm, started at -0.132247 mm, distance = -6.49 um
17-03-17 20:07:28.728 -07 000000593 INF: FPGA: Xmit ZDACW 30308\n [Z Motor]
17-03-17 20:07:28.728 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:07:28.738 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:28.738 -07 000000593 INF: FPGA: 'ZDACW 30308' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:07:28.738 -07 000000608 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:07:28.748 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:07:28.748 -07 000000475 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:28.748 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:28.748 -07 000000547 INF: FPGA: Recv ZDACR 30308
17-03-17 20:07:28.748 -07 000000475 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:28.748 -07 000000475 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:07:28.758 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:28.758 -07 000000593 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 20:07:28.758 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:28.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:07:28.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:07:28.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:28.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:07:28.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:07:28.808 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:28.808 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:28.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:28.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:07:28.818 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:07:28.918 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:28.918 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 20:07:29.128 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 20:07:29.128 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:07:29.168 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:29.178 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:07:29.178 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 20:07:29.178 -07 000000475 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:29.178 -07 000000475 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:07:29.178 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 20:07:30.128 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:30.128 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:07:30.138 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.138 -07 000000475 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:30.158 -07 000000475 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:30.158 -07 000000475 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:30.158 -07 000000475 INF: Y Motor: Moved to 64.0571 after 1558 ms (table move)
17-03-17 20:07:30.158 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138741 mm (DAC = 30308)
17-03-17 20:07:30.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30899
17-03-17 20:07:30.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:30.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:07:30.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30894
17-03-17 20:07:30.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.188 -07 000000448 INF: FPGA: Recv ZSGSRD 30889
17-03-17 20:07:30.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.198 -07 000000475 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:07:30.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.208 -07 000000448 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:07:30.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.218 -07 000000561 INF: FPGA: Recv ZSGSRD 30882
17-03-17 20:07:30.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.228 -07 000000448 INF: FPGA: Recv ZSGSRD 30891
17-03-17 20:07:30.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.238 -07 000000561 INF: FPGA: Recv ZSGSRD 30886
17-03-17 20:07:30.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:30.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30888
17-03-17 20:07:30.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.258 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:30.258 -07 000000561 INF: FPGA: Recv ZPIEZORD 26902
17-03-17 20:07:30.268 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -8.8 V.
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30890 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30882 (-137.9 uncal um), Max = 30899 (-138.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30890, posNoise = 9, negNoise = 8
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: After move to -0.138741, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:07:30.268 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:30.318 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 20:07:30.318 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:30.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:30.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:30.318 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:30.318 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:30.318 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:30.318 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:30.318 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:30.318 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:30.328 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:30.328 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:30.328 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:07:30.328 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:07:30.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:30.378 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:30.578 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:30.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:30.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:30.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:07:30.618 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:30.618 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:30.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:07:30.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:07:30.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:30.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:30.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:07:30.718 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:30.718 -07 000000618 INF: Autofocus start
17-03-17 20:07:30.718 -07 000000618 INF: MeasureProfile start
17-03-17 20:07:30.718 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:30.728 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:30.728 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:30.728 -07 000000618 INF: MeasureProfile done
17-03-17 20:07:30.728 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:07:30.728 -07 000000618 INF: Autofocus finished
17-03-17 20:07:30.928 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:30.928 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:07:30.938 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138767265070131. ----------
17-03-17 20:07:30.938 -07 000000610 INF: Cycle	34	Tile	6	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:30.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28816, sync = True, waitForSettling = True)
17-03-17 20:07:30.938 -07 000000610 INF: Z Motor: Moving to -0.131911 mm, started at -0.138767 mm, distance = 6.86 um
17-03-17 20:07:30.938 -07 000000610 INF: FPGA: Xmit ZDACW 28816\n [Z Motor]
17-03-17 20:07:30.938 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:07:30.948 -07 000000610 INF: FPGA: 'ZDACW 28816' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:30.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:30.948 -07 000000475 INF: FPGA: Recv ZDACR 28816
17-03-17 20:07:30.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:30.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.108 -07 000000502 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:07:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:31.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.118 -07 000000475 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:07:31.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:07:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.138 -07 000000486 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:07:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:07:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:07:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:07:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:07:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:07:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:31.198 -07 000000502 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:07:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:31.208 -07 000000618 INF: FPGA: Recv ZPIEZORD 25505
17-03-17 20:07:31.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:31.218 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.5 V.
17-03-17 20:07:31.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29824 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29824 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29829 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:07:31.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29824, posNoise = 5, negNoise = 5
17-03-17 20:07:31.218 -07 000000610 INF: Z Motor: After move to -0.131911, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:31.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:07:31.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:31.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:31.218 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:31.218 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:31.218 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:31.218 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:31.218 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:31.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:31.228 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:31.228 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:31.228 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:31.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:31.228 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:31.228 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:31.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:07:31.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:31.238 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:07:31.238 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:07:31.238 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:07:31.238 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:31.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28992 150\n [Camera]
17-03-17 20:07:31.298 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.996267,
17-03-17 20:07:31.438 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:31.748 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:31.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:31.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:31.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:31.848 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:31.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:31.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:07:31.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:31.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:31.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:31.858 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:31.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:07:32.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28992 795
17-03-17 20:07:32.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:32.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:07:32.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:07:32.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:32.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:32.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:07:32.248 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:07:32.248 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:32.248 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:32.248 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:07:32.248 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:07:32.388 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:32.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:32.388 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:32.388 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:32.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:07:32.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:32.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:32.398 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:32.398 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:32.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:07:32.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:32.578 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:32.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28992 150' command took 4 ms to send, 1329 ms to get response, and 1343 ms overall
17-03-17 20:07:32.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:32.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131919054927014. ------
17-03-17 20:07:32.588 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:32.588 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13847 mm
17-03-17 20:07:32.588 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:32.598 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:32.598 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:32.598 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:07:32.598 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:07:32.598 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:32.598 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30250, sync = True, waitForSettling = False)
17-03-17 20:07:32.598 -07 000000448 INF: Z Motor: Moving to -0.138476 mm, started at -0.131919 mm, distance = -6.56 um
17-03-17 20:07:32.598 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:07:32.608 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:32.608 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:32.608 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:32.608 -07 000000486 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:07:32.608 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:32.618 -07 000000448 INF: FPGA: Xmit ZDACW 30250\n [Z Motor]
17-03-17 20:07:32.618 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:07:32.628 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:32.628 -07 000000448 INF: FPGA: 'ZDACW 30250' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:07:32.638 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:32.638 -07 000000618 INF: FPGA: Recv ZDACR 30250
17-03-17 20:07:32.648 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:07:32.648 -07 000000448 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:07:32.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:07:32.798 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:07:32.798 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:32.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:07:32.798 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:07:32.798 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:32.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:32.798 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:32.798 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:07:32.808 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:32.808 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:07:32.808 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:07:32.998 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:07:32.998 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 20:07:33.038 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:33.038 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:07:33.048 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:33.048 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:33.048 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:07:33.048 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.835 mm, average velocity = 2.094 mm/sec
17-03-17 20:07:33.998 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:33.998 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:07:34.008 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:34.008 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:34.028 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:34.028 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:34.028 -07 000000486 INF: Y Motor: Moved to 64.8789 after 1432 ms (table move)
17-03-17 20:07:34.028 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138476 mm (DAC = 30250)
17-03-17 20:07:34.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30844
17-03-17 20:07:34.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:34.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30849
17-03-17 20:07:34.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.048 -07 000000618 INF: FPGA: Recv ZSGSRD 30846
17-03-17 20:07:34.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.058 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-17 20:07:34.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30843
17-03-17 20:07:34.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.078 -07 000000618 INF: FPGA: Recv ZSGSRD 30851
17-03-17 20:07:34.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.088 -07 000000618 INF: FPGA: Recv ZSGSRD 30841
17-03-17 20:07:34.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.098 -07 000000618 INF: FPGA: Recv ZSGSRD 30841
17-03-17 20:07:34.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30847
17-03-17 20:07:34.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.118 -07 000000626 INF: FPGA: Recv ZSGSRD 30847
17-03-17 20:07:34.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.128 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:34.128 -07 000000626 INF: FPGA: Recv ZPIEZORD 26765
17-03-17 20:07:34.138 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.0 V.
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30846 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30846 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30854 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30846, posNoise = 8, negNoise = 5
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: After move to -0.138476, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:07:34.138 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:34.188 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:07:34.188 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:34.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:34.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:34.188 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:34.188 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:34.188 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:34.188 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:34.188 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:34.188 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:34.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:34.198 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:34.208 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:07:34.208 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:07:34.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:34.258 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:34.448 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:34.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:34.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:34.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:07:34.488 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:34.488 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:34.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:07:34.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:07:34.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:34.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:34.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:07:34.598 -07 000000576 INF: Autofocus start
17-03-17 20:07:34.598 -07 000000576 INF: MeasureProfile start
17-03-17 20:07:34.598 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:34.598 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:34.608 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:34.608 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:34.608 -07 000000576 INF: MeasureProfile done
17-03-17 20:07:34.608 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:07:34.608 -07 000000576 INF: Autofocus finished
17-03-17 20:07:34.808 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:34.808 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:34.808 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138484599735893. ----------
17-03-17 20:07:34.808 -07 000000610 INF: Cycle	34	Tile	7	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:34.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28774, sync = True, waitForSettling = True)
17-03-17 20:07:34.818 -07 000000610 INF: Z Motor: Moving to -0.131719 mm, started at -0.138485 mm, distance = 6.77 um
17-03-17 20:07:34.818 -07 000000610 INF: FPGA: Xmit ZDACW 28774\n [Z Motor]
17-03-17 20:07:34.818 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:07:34.828 -07 000000610 INF: FPGA: 'ZDACW 28774' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:34.828 -07 000000618 INF: FPGA: Recv ZDACR 28774
17-03-17 20:07:34.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:34.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29793
17-03-17 20:07:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:34.998 -07 000000486 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:07:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29795
17-03-17 20:07:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:07:35.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.028 -07 000000626 INF: FPGA: Recv ZSGSRD 29791
17-03-17 20:07:35.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.038 -07 000000486 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:07:35.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:07:35.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.058 -07 000000618 INF: FPGA: Recv ZSGSRD 29794
17-03-17 20:07:35.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29795
17-03-17 20:07:35.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:35.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29797
17-03-17 20:07:35.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:35.088 -07 000000480 INF: FPGA: Recv ZPIEZORD 25453
17-03-17 20:07:35.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:35.098 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.5 V.
17-03-17 20:07:35.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29794 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29794 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29788 (-130.9 uncal um), Max = 29802 (-131.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:07:35.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29794, posNoise = 8, negNoise = 6
17-03-17 20:07:35.098 -07 000000610 INF: Z Motor: After move to -0.131719, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:35.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:07:35.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:35.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:35.098 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:35.098 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:35.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:35.098 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:35.098 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:35.098 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:35.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:35.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:35.098 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:07:35.098 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:35.108 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:35.108 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:35.108 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:07:35.108 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:35.118 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:07:35.118 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:35.118 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:07:35.118 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:07:35.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28950 150\n [Camera]
17-03-17 20:07:35.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:35.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:07:35.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:07:35.728 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:35.728 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:35.728 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:07:35.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:07:35.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:07:35.738 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:35.738 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:35.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:07:35.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28950 795
17-03-17 20:07:36.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:36.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:07:36.108 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:07:36.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:36.108 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:07:36.108 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:07:36.108 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:36.118 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:07:36.118 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:07:36.118 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:07:36.118 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:07:36.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:36.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:36.268 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:36.268 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:36.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:07:36.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:36.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:36.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:36.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:36.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:07:36.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:36.458 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:36.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28950 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-17 20:07:36.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:36.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131726328562761. ------
17-03-17 20:07:36.468 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:36.468 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13836 mm
17-03-17 20:07:36.468 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:36.468 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:07:36.468 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:07:36.468 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:36.468 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30224, sync = True, waitForSettling = False)
17-03-17 20:07:36.468 -07 000000547 INF: Z Motor: Moving to -0.138357 mm, started at -0.131726 mm, distance = -6.63 um
17-03-17 20:07:36.478 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:36.478 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:36.488 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:36.488 -07 000000415 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:07:36.498 -07 000000547 INF: FPGA: Xmit ZDACW 30224\n [Z Motor]
17-03-17 20:07:36.498 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:07:36.498 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:36.498 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:36.498 -07 000000459 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:07:36.498 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:07:36.508 -07 000000547 INF: FPGA: 'ZDACW 30224' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 20:07:36.618 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:36.638 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:36.638 -07 000000608 INF: FPGA: Recv ZDACR 30224
17-03-17 20:07:36.648 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 20:07:36.648 -07 000000547 INF: Z Motor: MoveAbsStepped took 173 ms (did NOT wait for settling yet))
17-03-17 20:07:36.658 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.018051,
17-03-17 20:07:36.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:07:36.668 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:07:36.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:36.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:07:36.668 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:07:36.668 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:36.668 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:36.678 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:36.678 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:07:36.678 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:07:36.678 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:36.678 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 20:07:36.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:37.008 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:07:37.008 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 510 ms overall
17-03-17 20:07:37.038 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:37.038 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:07:37.048 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:37.048 -07 000000459 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:37.048 -07 000000459 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:07:37.048 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 510 ms, distance = 0.844 mm, average velocity = 1.654 mm/sec
17-03-17 20:07:37.998 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:37.998 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:07:38.008 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.008 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:38.028 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:38.028 -07 000000459 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:07:38.028 -07 000000459 INF: Y Motor: Moved to 65.7144 after 1560 ms (table move)
17-03-17 20:07:38.028 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138357 mm (DAC = 30224)
17-03-17 20:07:38.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:07:38.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:38.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.048 -07 000000618 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:07:38.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.058 -07 000000415 INF: FPGA: Recv ZSGSRD 30826
17-03-17 20:07:38.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30818
17-03-17 20:07:38.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:07:38.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.088 -07 000000593 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:07:38.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.098 -07 000000593 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:07:38.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.108 -07 000000593 INF: FPGA: Recv ZSGSRD 30836
17-03-17 20:07:38.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.118 -07 000000415 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:07:38.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.128 -07 000000593 INF: FPGA: Recv ZSGSRD 30811
17-03-17 20:07:38.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.138 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:38.138 -07 000000593 INF: FPGA: Recv ZPIEZORD 26793
17-03-17 20:07:38.148 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.9 V.
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30825 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30811 (-137.5 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30825, posNoise = 11, negNoise = 14
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: After move to -0.138357, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: Settle wait time = 1563 ms, measure time = 111 ms (allowed 150 ms), total time = 1674 ms
17-03-17 20:07:38.148 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:38.188 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1717 ms
17-03-17 20:07:38.188 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:38.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:38.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:38.188 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:38.188 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:38.188 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:38.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:38.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:38.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:38.198 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:38.198 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:38.208 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:07:38.208 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:07:38.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:38.258 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:38.458 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:38.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:38.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:38.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:07:38.498 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:38.498 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:38.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:07:38.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:07:38.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:38.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:38.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:07:38.598 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:38.598 -07 000000626 INF: Autofocus start
17-03-17 20:07:38.598 -07 000000626 INF: MeasureProfile start
17-03-17 20:07:38.598 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:38.608 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:38.608 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:38.608 -07 000000626 INF: MeasureProfile done
17-03-17 20:07:38.608 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:07:38.608 -07 000000626 INF: Autofocus finished
17-03-17 20:07:38.808 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:38.808 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:38.808 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138349691280916. ----------
17-03-17 20:07:38.808 -07 000000610 INF: Cycle	34	Tile	8	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:38.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28719, sync = True, waitForSettling = True)
17-03-17 20:07:38.818 -07 000000610 INF: Z Motor: Moving to -0.131467 mm, started at -0.138350 mm, distance = 6.88 um
17-03-17 20:07:38.818 -07 000000610 INF: FPGA: Xmit ZDACW 28719\n [Z Motor]
17-03-17 20:07:38.818 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:07:38.828 -07 000000610 INF: FPGA: 'ZDACW 28719' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:38.828 -07 000000415 INF: FPGA: Recv ZDACR 28719
17-03-17 20:07:38.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:38.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:38.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.988 -07 000000626 INF: FPGA: Recv ZSGSRD 29753
17-03-17 20:07:38.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:38.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:38.998 -07 000000626 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:07:39.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.008 -07 000000626 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:07:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.018 -07 000000415 INF: FPGA: Recv ZSGSRD 29759
17-03-17 20:07:39.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.028 -07 000000593 INF: FPGA: Recv ZSGSRD 29752
17-03-17 20:07:39.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.038 -07 000000593 INF: FPGA: Recv ZSGSRD 29756
17-03-17 20:07:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.048 -07 000000626 INF: FPGA: Recv ZSGSRD 29750
17-03-17 20:07:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.058 -07 000000593 INF: FPGA: Recv ZSGSRD 29757
17-03-17 20:07:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:07:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:39.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:07:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:39.088 -07 000000478 INF: FPGA: Recv ZPIEZORD 25372
17-03-17 20:07:39.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:39.098 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.6 V.
17-03-17 20:07:39.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29754 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29750 (-130.7 uncal um), Max = 29759 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:07:39.098 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29754, posNoise = 5, negNoise = 4
17-03-17 20:07:39.098 -07 000000610 INF: Z Motor: After move to -0.131467, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:39.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:07:39.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:39.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:39.098 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:39.098 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:39.098 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:39.098 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:39.098 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:39.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:39.098 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:39.098 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:39.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:39.098 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:39.098 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:39.098 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:39.098 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:07:39.098 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:39.118 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:07:39.118 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:07:39.118 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:07:39.118 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:07:39.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28896 150\n [Camera]
17-03-17 20:07:39.328 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:39.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:39.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:39.738 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:39.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:39.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:39.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:39.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:39.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:07:39.748 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:39.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:07:39.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28896 795
17-03-17 20:07:40.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:07:40.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:07:40.128 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:07:40.128 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:40.128 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:40.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:07:40.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:07:40.128 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:40.128 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:40.128 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:07:40.138 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:07:40.278 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:40.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:40.278 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:40.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:40.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:40.278 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:40.288 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:40.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:07:40.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:40.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:07:40.468 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:40.468 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:40.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28896 150' command took 2 ms to send, 1333 ms to get response, and 1345 ms overall
17-03-17 20:07:40.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:40.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131469360077091. ------
17-03-17 20:07:40.588 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13789 mm
17-03-17 20:07:40.588 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:40.588 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:40.598 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30122, sync = True, waitForSettling = False)
17-03-17 20:07:40.598 -07 000000593 INF: Z Motor: Moving to -0.137890 mm, started at -0.131469 mm, distance = -6.42 um
17-03-17 20:07:40.598 -07 000000593 INF: FPGA: Xmit ZDACW 30122\n [Z Motor]
17-03-17 20:07:40.598 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:40.598 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:07:40.598 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:07:40.598 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:07:40.598 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:07:40.608 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:40.608 -07 000000593 INF: FPGA: 'ZDACW 30122' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:40.618 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:40.618 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:07:40.628 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:07:40.628 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:40.628 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:40.628 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:40.628 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:07:40.628 -07 000000478 INF: FPGA: Recv ZDACR 30122
17-03-17 20:07:40.638 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:40.638 -07 000000593 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:07:40.638 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:40.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:07:40.688 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:07:40.688 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:40.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:07:40.688 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:07:40.688 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:40.688 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:40.698 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:40.698 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 20:07:40.698 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:07:40.808 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:40.808 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 20:07:41.008 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:07:41.008 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:07:41.048 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:41.048 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:07:41.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:41.058 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:41.058 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:07:41.058 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 20:07:41.748 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:42.008 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:42.008 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:07:42.018 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.018 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:42.028 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.012614,
17-03-17 20:07:42.038 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:42.038 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:42.038 -07 000000512 INF: Y Motor: Moved to 66.5391 after 1441 ms (table move)
17-03-17 20:07:42.038 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137890 mm (DAC = 30122)
17-03-17 20:07:42.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.048 -07 000000448 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:07:42.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:42.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.058 -07 000000448 INF: FPGA: Recv ZSGSRD 30763
17-03-17 20:07:42.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:42.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.088 -07 000000448 INF: FPGA: Recv ZSGSRD 30755
17-03-17 20:07:42.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:42.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.098 -07 000000448 INF: FPGA: Recv ZSGSRD 30750
17-03-17 20:07:42.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.108 -07 000000448 INF: FPGA: Recv ZSGSRD 30746
17-03-17 20:07:42.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.118 -07 000000448 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:07:42.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30753
17-03-17 20:07:42.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.138 -07 000000448 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:07:42.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.148 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.148 -07 000000448 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:07:42.158 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.158 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.158 -07 000000448 INF: FPGA: Recv ZSGSRD 30749
17-03-17 20:07:42.168 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.168 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:42.168 -07 000000448 INF: FPGA: Recv ZPIEZORD 26723
17-03-17 20:07:42.178 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -8.9 V.
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30756 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30756 (-137.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30746 (-137.0 uncal um), Max = 30764 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30756, posNoise = 8, negNoise = 10
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: After move to -0.137890, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 132 ms (allowed 150 ms), total time = 1578 ms
17-03-17 20:07:42.178 -07 000000626 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:42.198 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:07:42.198 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:42.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:42.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:42.198 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:42.198 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:42.208 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:42.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:42.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:42.208 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:42.208 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:42.208 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:42.218 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:07:42.218 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:07:42.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:42.268 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:42.468 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:42.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:42.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:42.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:07:42.508 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:42.508 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:42.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 20:07:42.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:07:42.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:42.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:42.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:07:42.608 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:42.608 -07 000000626 INF: Autofocus start
17-03-17 20:07:42.608 -07 000000626 INF: MeasureProfile start
17-03-17 20:07:42.608 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:42.618 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:42.618 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:42.618 -07 000000626 INF: MeasureProfile done
17-03-17 20:07:42.618 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:07:42.618 -07 000000626 INF: Autofocus finished
17-03-17 20:07:42.818 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:42.818 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:42.828 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137906420643135. ----------
17-03-17 20:07:42.828 -07 000000610 INF: Cycle	34	Tile	9	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:42.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28617, sync = True, waitForSettling = True)
17-03-17 20:07:42.828 -07 000000610 INF: Z Motor: Moving to -0.131000 mm, started at -0.137906 mm, distance = 6.91 um
17-03-17 20:07:42.828 -07 000000610 INF: FPGA: Xmit ZDACW 28617\n [Z Motor]
17-03-17 20:07:42.828 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:07:42.838 -07 000000610 INF: FPGA: 'ZDACW 28617' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:42.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:42.838 -07 000000480 INF: FPGA: Recv ZDACR 28617
17-03-17 20:07:42.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:42.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:42.998 -07 000000626 INF: FPGA: Recv ZSGSRD 29689
17-03-17 20:07:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:07:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.018 -07 000000626 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:07:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.028 -07 000000618 INF: FPGA: Recv ZSGSRD 29680
17-03-17 20:07:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.038 -07 000000448 INF: FPGA: Recv ZSGSRD 29675
17-03-17 20:07:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:07:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.058 -07 000000448 INF: FPGA: Recv ZSGSRD 29680
17-03-17 20:07:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:07:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29680
17-03-17 20:07:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:43.088 -07 000000618 INF: FPGA: Recv ZSGSRD 29685
17-03-17 20:07:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:43.098 -07 000000626 INF: FPGA: Recv ZPIEZORD 25337
17-03-17 20:07:43.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:43.108 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.5 V.
17-03-17 20:07:43.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29681 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29690 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:43.108 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 8, negNoise = 7
17-03-17 20:07:43.108 -07 000000610 INF: Z Motor: After move to -0.131000, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:43.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:07:43.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:43.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:43.108 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:43.108 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:43.108 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:43.108 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:43.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:43.108 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:43.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:07:43.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:43.108 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:07:43.108 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:43.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:43.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:43.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:43.118 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:43.128 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:07:43.128 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:43.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:07:43.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:43.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28794 150\n [Camera]
17-03-17 20:07:43.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:43.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:43.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:43.738 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:43.738 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:43.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:07:43.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:43.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:43.738 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:43.738 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:43.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:07:43.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28794 795
17-03-17 20:07:44.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:07:44.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:07:44.118 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:07:44.118 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:44.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:07:44.118 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:07:44.118 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:44.118 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:44.118 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:07:44.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:44.128 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:07:44.278 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:44.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:44.278 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:44.278 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:44.278 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:07:44.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:44.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:44.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:44.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:44.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:07:44.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:44.468 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:44.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28794 150' command took 2 ms to send, 1335 ms to get response, and 1342 ms overall
17-03-17 20:07:44.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:44.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.131006816802884. ------
17-03-17 20:07:44.478 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:44.478 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13773 mm
17-03-17 20:07:44.478 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:44.478 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:07:44.478 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:07:44.478 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30087, sync = True, waitForSettling = False)
17-03-17 20:07:44.478 -07 000000486 INF: Z Motor: Moving to -0.137729 mm, started at -0.131007 mm, distance = -6.72 um
17-03-17 20:07:44.478 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:44.488 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:44.488 -07 000000486 INF: FPGA: Xmit ZDACW 30087\n [Z Motor]
17-03-17 20:07:44.488 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:07:44.498 -07 000000486 INF: FPGA: 'ZDACW 30087' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:07:44.498 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:44.508 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:44.508 -07 000000512 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:07:44.518 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:44.518 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 20:07:44.518 -07 000000626 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:44.518 -07 000000576 INF: FPGA: Recv ZDACR 30087
17-03-17 20:07:44.518 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:44.518 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:07:44.528 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:07:44.528 -07 000000486 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:07:44.528 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:44.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:07:44.678 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:07:44.678 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:44.678 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:07:44.678 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:07:44.678 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:44.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:44.688 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:07:44.688 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:07:44.688 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:07:44.698 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:44.698 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:07:44.898 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:07:44.898 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:07:44.938 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:44.938 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:07:44.948 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:44.948 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:44.948 -07 000000626 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:07:44.948 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 20:07:45.898 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:45.898 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:07:45.908 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:45.908 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:45.928 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:45.928 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:45.928 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1446 ms (table move)
17-03-17 20:07:45.928 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137729 mm (DAC = 30087)
17-03-17 20:07:45.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.928 -07 000000576 INF: FPGA: Recv ZSGSRD 30728
17-03-17 20:07:45.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:45.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.938 -07 000000626 INF: FPGA: Recv ZSGSRD 30728
17-03-17 20:07:45.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.948 -07 000000486 INF: FPGA: Recv ZSGSRD 30732
17-03-17 20:07:45.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.958 -07 000000512 INF: FPGA: Recv ZSGSRD 30728
17-03-17 20:07:45.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.968 -07 000000626 INF: FPGA: Recv ZSGSRD 30730
17-03-17 20:07:45.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.978 -07 000000618 INF: FPGA: Recv ZSGSRD 30729
17-03-17 20:07:45.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30734
17-03-17 20:07:45.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:45.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:45.998 -07 000000608 INF: FPGA: Recv ZSGSRD 30729
17-03-17 20:07:46.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.008 -07 000000626 INF: FPGA: Recv ZSGSRD 30724
17-03-17 20:07:46.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30731
17-03-17 20:07:46.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.028 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:46.028 -07 000000486 INF: FPGA: Recv ZPIEZORD 26732
17-03-17 20:07:46.038 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.8 V.
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30729 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30729 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30724 (-136.9 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30729, posNoise = 5, negNoise = 5
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: After move to -0.137729, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:07:46.038 -07 000000448 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:46.088 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:07:46.088 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:46.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:46.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:46.088 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:46.088 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:46.088 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:46.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:46.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:46.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:46.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:46.088 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:46.098 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:07:46.098 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:07:46.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:46.148 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:46.348 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:46.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:46.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:46.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:07:46.388 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:46.388 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:46.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:07:46.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:07:46.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:46.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:46.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:07:46.488 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:46.488 -07 000000512 INF: Autofocus start
17-03-17 20:07:46.488 -07 000000512 INF: MeasureProfile start
17-03-17 20:07:46.488 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:46.498 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:46.498 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:46.498 -07 000000512 INF: MeasureProfile done
17-03-17 20:07:46.498 -07 000000512 INF: X=40  Z correction [um]=0.1684672
17-03-17 20:07:46.498 -07 000000512 INF: Autofocus finished
17-03-17 20:07:46.698 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:46.698 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:07:46.698 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137732966915307. ----------
17-03-17 20:07:46.698 -07 000000610 INF: Cycle	34	Tile	10	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:46.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28636, sync = True, waitForSettling = True)
17-03-17 20:07:46.708 -07 000000610 INF: Z Motor: Moving to -0.131087 mm, started at -0.137733 mm, distance = 6.65 um
17-03-17 20:07:46.708 -07 000000610 INF: FPGA: Xmit ZDACW 28636\n [Z Motor]
17-03-17 20:07:46.708 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:07:46.718 -07 000000610 INF: FPGA: 'ZDACW 28636' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:46.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:46.718 -07 000000576 INF: FPGA: Recv ZDACR 28636
17-03-17 20:07:46.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:46.748 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:46.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.878 -07 000000626 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:07:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.888 -07 000000448 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:07:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.898 -07 000000618 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:07:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.908 -07 000000608 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:07:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.918 -07 000000618 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:07:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29686
17-03-17 20:07:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.938 -07 000000618 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:07:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.948 -07 000000486 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:07:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.958 -07 000000626 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:07:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:46.968 -07 000000448 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:07:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:46.978 -07 000000626 INF: FPGA: Recv ZPIEZORD 25384
17-03-17 20:07:46.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:46.988 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 20:07:46.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29694 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29686 (-130.3 uncal um), Max = 29701 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:07:46.988 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29694, posNoise = 7, negNoise = 8
17-03-17 20:07:46.988 -07 000000610 INF: Z Motor: After move to -0.131087, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:46.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:07:46.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:46.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:46.988 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:46.988 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:46.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:46.988 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:46.988 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:46.988 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:46.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:46.988 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:46.988 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:46.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:46.988 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:46.988 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:46.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:46.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:46.998 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:07:46.998 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:07:47.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:07:47.008 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:07:47.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28813 150\n [Camera]
17-03-17 20:07:47.208 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:47.408 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.986717,
17-03-17 20:07:47.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:47.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:47.618 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:47.618 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:47.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:07:47.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:47.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:47.618 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:47.618 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:47.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:07:47.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28813 795
17-03-17 20:07:47.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:47.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:07:47.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:07:47.998 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:47.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:07:47.998 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:07:47.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:48.008 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:48.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:07:48.008 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:48.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:07:48.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:48.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:48.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:48.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:48.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:07:48.158 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:48.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:48.158 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:48.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:48.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:07:48.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:48.348 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:48.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28813 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-17 20:07:48.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:48.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131083907348585. ------
17-03-17 20:07:48.358 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:48.358 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13754 mm
17-03-17 20:07:48.358 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:48.358 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:07:48.358 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:07:48.358 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30045, sync = True, waitForSettling = False)
17-03-17 20:07:48.358 -07 000000608 INF: Z Motor: Moving to -0.137537 mm, started at -0.131084 mm, distance = -6.45 um
17-03-17 20:07:48.358 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:48.368 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:48.368 -07 000000608 INF: FPGA: Xmit ZDACW 30045\n [Z Motor]
17-03-17 20:07:48.368 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:07:48.378 -07 000000608 INF: FPGA: 'ZDACW 30045' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:07:48.378 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:48.498 -07 000000593 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:07:48.508 -07 000000448 INF: FPGA: 'YRDPOS' command took 121 ms to send, 0 ms to get response, and 145 ms overall
17-03-17 20:07:48.508 -07 000000448 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:48.508 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:48.508 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:48.508 -07 000000448 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:07:48.518 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:48.518 -07 000000593 INF: FPGA: Recv ZDACR 30045
17-03-17 20:07:48.528 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:48.528 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 150 ms overall
17-03-17 20:07:48.528 -07 000000608 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 20:07:48.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:07:48.558 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:07:48.558 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:48.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:07:48.558 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:07:48.558 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:48.558 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:48.568 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:07:48.568 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:07:48.568 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:07:48.708 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:48.708 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 342 ms overall
17-03-17 20:07:48.898 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 20:07:48.898 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:07:48.938 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:48.938 -07 000000618 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:07:48.948 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:48.948 -07 000000448 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:48.948 -07 000000448 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:07:48.948 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:07:49.898 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:49.898 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:07:49.908 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.908 -07 000000448 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:49.928 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:49.928 -07 000000448 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:49.928 -07 000000448 INF: Y Motor: Moved to 68.2056 after 1566 ms (table move)
17-03-17 20:07:49.928 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137537 mm (DAC = 30045)
17-03-17 20:07:49.928 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.928 -07 000000448 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:07:49.938 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:49.938 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30700
17-03-17 20:07:49.948 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.948 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:07:49.958 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.958 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.958 -07 000000608 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:07:49.968 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.968 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.968 -07 000000608 INF: FPGA: Recv ZSGSRD 30706
17-03-17 20:07:49.978 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.978 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.978 -07 000000448 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:07:49.988 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.988 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.988 -07 000000626 INF: FPGA: Recv ZSGSRD 30696
17-03-17 20:07:49.998 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:49.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:49.998 -07 000000608 INF: FPGA: Recv ZSGSRD 30692
17-03-17 20:07:50.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.008 -07 000000608 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:07:50.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30706
17-03-17 20:07:50.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.028 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:50.028 -07 000000502 INF: FPGA: Recv ZPIEZORD 26717
17-03-17 20:07:50.038 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -8.8 V.
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30700 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30701 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30706 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30700, posNoise = 6, negNoise = 8
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: After move to -0.137537, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: Settle wait time = 1569 ms, measure time = 106 ms (allowed 150 ms), total time = 1675 ms
17-03-17 20:07:50.038 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:50.088 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1728 ms
17-03-17 20:07:50.088 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:50.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:50.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:50.088 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:50.088 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:50.088 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:50.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:50.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:07:50.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:50.098 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:50.098 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:50.108 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:07:50.108 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:07:50.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:50.158 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:50.358 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:50.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:50.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:50.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:07:50.398 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:50.398 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:50.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:07:50.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:07:50.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:50.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:50.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:07:50.498 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:50.498 -07 000000475 INF: Autofocus start
17-03-17 20:07:50.498 -07 000000475 INF: MeasureProfile start
17-03-17 20:07:50.498 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:50.508 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:07:50.508 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:50.508 -07 000000475 INF: MeasureProfile done
17-03-17 20:07:50.508 -07 000000475 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:07:50.508 -07 000000475 INF: Autofocus finished
17-03-17 20:07:50.708 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:50.708 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:50.718 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137546664763196. ----------
17-03-17 20:07:50.718 -07 000000610 INF: Cycle	34	Tile	11	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:50.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28540, sync = True, waitForSettling = True)
17-03-17 20:07:50.718 -07 000000610 INF: Z Motor: Moving to -0.130648 mm, started at -0.137547 mm, distance = 6.90 um
17-03-17 20:07:50.718 -07 000000610 INF: FPGA: Xmit ZDACW 28540\n [Z Motor]
17-03-17 20:07:50.718 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:07:50.728 -07 000000610 INF: FPGA: 'ZDACW 28540' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:50.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:50.728 -07 000000608 INF: FPGA: Recv ZDACR 28540
17-03-17 20:07:50.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:50.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.888 -07 000000608 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:07:50.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:50.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.898 -07 000000448 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:07:50.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.908 -07 000000608 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:07:50.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.918 -07 000000480 INF: FPGA: Recv ZSGSRD 29621
17-03-17 20:07:50.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.928 -07 000000475 INF: FPGA: Recv ZSGSRD 29630
17-03-17 20:07:50.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:07:50.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:07:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:07:50.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29630
17-03-17 20:07:50.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:50.978 -07 000000480 INF: FPGA: Recv ZSGSRD 29625
17-03-17 20:07:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:50.988 -07 000000512 INF: FPGA: Recv ZPIEZORD 25333
17-03-17 20:07:50.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:50.998 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.4 V.
17-03-17 20:07:50.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29627 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29621 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:07:50.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 3, negNoise = 6
17-03-17 20:07:50.998 -07 000000610 INF: Z Motor: After move to -0.130648, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:50.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:07:50.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:50.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:50.998 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:50.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:50.998 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:50.998 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:50.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:50.998 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:50.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:50.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:50.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:50.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:51.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:51.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:51.008 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:51.008 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:51.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:07:51.008 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:07:51.018 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:07:51.018 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:51.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28717 150\n [Camera]
17-03-17 20:07:51.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:51.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:51.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:51.628 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:51.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:51.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:51.628 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:51.638 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:51.638 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:07:51.638 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:51.638 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:07:51.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:51.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28717 795
17-03-17 20:07:51.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:52.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:07:52.018 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:07:52.018 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:52.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:07:52.018 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:07:52.018 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:52.018 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:07:52.018 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:07:52.028 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:52.028 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:07:52.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:52.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:52.168 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:52.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:52.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:52.168 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:52.178 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:52.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:07:52.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:52.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:07:52.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:07:52.358 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:52.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28717 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-17 20:07:52.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:52.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130653485135087. ------
17-03-17 20:07:52.488 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13732 mm
17-03-17 20:07:52.488 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:52.488 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29997, sync = True, waitForSettling = False)
17-03-17 20:07:52.488 -07 000000448 INF: Z Motor: Moving to -0.137317 mm, started at -0.130653 mm, distance = -6.66 um
17-03-17 20:07:52.488 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:07:52.488 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:07:52.498 -07 000000448 INF: FPGA: Xmit ZDACW 29997\n [Z Motor]
17-03-17 20:07:52.508 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:52.518 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:52.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:07:52.568 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:07:52.568 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:52.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:07:52.578 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:07:52.578 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:52.578 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:52.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:52.578 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:07:52.588 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:07:52.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:07:52.588 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:52.588 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:07:52.588 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 79 ms to get response, and 104 ms overall
17-03-17 20:07:52.588 -07 000000448 INF: FPGA: 'ZDACW 29997' command took 0 ms to send, 89 ms to get response, and 101 ms overall
17-03-17 20:07:52.588 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 69 ms to get response, and 101 ms overall
17-03-17 20:07:52.588 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:52.588 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:52.588 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:52.598 -07 000000608 INF: Y Motor: Moving 1339 steps-14
17-03-17 20:07:52.598 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:52.598 -07 000000626 INF: FPGA: Recv ZDACR 29997
17-03-17 20:07:52.598 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:07:52.598 -07 000000448 INF: Z Motor: MoveAbsStepped took 105 ms (did NOT wait for settling yet))
17-03-17 20:07:52.608 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:52.798 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:52.798 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-17 20:07:52.898 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 3.962185,
17-03-17 20:07:52.978 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:07:52.978 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 20:07:53.018 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:53.018 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:07:53.028 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:53.028 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:53.028 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:07:53.028 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 20:07:53.978 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:53.978 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:07:53.988 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:53.988 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:54.008 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:54.008 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:54.008 -07 000000608 INF: Y Motor: Moved to 69.0273 after 1514 ms (table move)
17-03-17 20:07:54.008 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137317 mm (DAC = 29997)
17-03-17 20:07:54.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.008 -07 000000576 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:07:54.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:07:54.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.018 -07 000000459 INF: FPGA: Recv ZSGSRD 30666
17-03-17 20:07:54.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.028 -07 000000448 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:07:54.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.038 -07 000000626 INF: FPGA: Recv ZSGSRD 30669
17-03-17 20:07:54.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.048 -07 000000551 INF: FPGA: Recv ZSGSRD 30677
17-03-17 20:07:54.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.058 -07 000000459 INF: FPGA: Recv ZSGSRD 30670
17-03-17 20:07:54.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.068 -07 000000448 INF: FPGA: Recv ZSGSRD 30663
17-03-17 20:07:54.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30660
17-03-17 20:07:54.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.088 -07 000000608 INF: FPGA: Recv ZSGSRD 30660
17-03-17 20:07:54.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:07:54.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.108 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:54.108 -07 000000415 INF: FPGA: Recv ZPIEZORD 26707
17-03-17 20:07:54.118 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -8.7 V.
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30667 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30667 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30677 (-136.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30667, posNoise = 10, negNoise = 7
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: After move to -0.137317, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: Settle wait time = 1518 ms, measure time = 105 ms (allowed 150 ms), total time = 1623 ms
17-03-17 20:07:54.118 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:54.168 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1675 ms
17-03-17 20:07:54.168 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:54.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:54.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:54.168 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:54.168 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:54.168 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:54.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:54.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:54.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:54.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:07:54.178 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:54.188 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:07:54.188 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:07:54.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:54.238 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 20:07:54.438 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 20:07:54.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 20:07:54.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:54.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:07:54.468 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:54.468 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:54.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:07:54.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:07:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:54.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:07:54.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:07:54.568 -07 000000618 INF: Autofocus start
17-03-17 20:07:54.568 -07 000000618 INF: MeasureProfile start
17-03-17 20:07:54.568 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:54.568 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:54.578 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:54.578 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:54.578 -07 000000618 INF: MeasureProfile done
17-03-17 20:07:54.578 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:07:54.578 -07 000000618 INF: Autofocus finished
17-03-17 20:07:54.778 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:54.778 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:54.778 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137334665762518. ----------
17-03-17 20:07:54.778 -07 000000610 INF: Cycle	34	Tile	12	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:54.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28521, sync = True, waitForSettling = True)
17-03-17 20:07:54.788 -07 000000610 INF: Z Motor: Moving to -0.130561 mm, started at -0.137335 mm, distance = 6.77 um
17-03-17 20:07:54.788 -07 000000610 INF: FPGA: Xmit ZDACW 28521\n [Z Motor]
17-03-17 20:07:54.788 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:07:54.798 -07 000000610 INF: FPGA: 'ZDACW 28521' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:07:54.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:54.798 -07 000000415 INF: FPGA: Recv ZDACR 28521
17-03-17 20:07:54.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.958 -07 000000486 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:07:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.968 -07 000000512 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:07:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:07:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.988 -07 000000551 INF: FPGA: Recv ZSGSRD 29610
17-03-17 20:07:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:54.998 -07 000000415 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:07:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:55.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:07:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:55.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29609
17-03-17 20:07:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:55.028 -07 000000593 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:07:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:55.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29610
17-03-17 20:07:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:55.048 -07 000000415 INF: FPGA: Recv ZSGSRD 29612
17-03-17 20:07:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:55.058 -07 000000478 INF: FPGA: Recv ZPIEZORD 25308
17-03-17 20:07:55.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:55.068 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 20:07:55.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29613 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:07:55.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 6, negNoise = 5
17-03-17 20:07:55.068 -07 000000610 INF: Z Motor: After move to -0.130561, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:55.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:07:55.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:55.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:55.068 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:55.068 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:55.068 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:55.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:55.068 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:55.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:55.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:07:55.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:55.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:55.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:55.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:55.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:55.078 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:55.078 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:55.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:07:55.088 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:07:55.088 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:07:55.088 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:55.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28698 150\n [Camera]
17-03-17 20:07:55.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:55.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:55.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:55.698 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:55.698 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:55.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:07:55.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:55.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:55.698 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:55.698 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:55.698 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:07:55.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28698 795
17-03-17 20:07:56.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:07:56.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:07:56.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:07:56.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:56.088 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:56.088 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:07:56.088 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:07:56.088 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:56.088 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:56.088 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:07:56.098 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:07:56.238 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:07:56.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:07:56.238 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:56.238 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:56.238 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:07:56.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:07:56.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:07:56.238 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:56.238 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:56.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:07:56.428 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:07:56.428 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:07:56.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28698 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-17 20:07:56.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:07:56.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130569970377244. ------
17-03-17 20:07:56.438 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13697 mm
17-03-17 20:07:56.438 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:07:56.448 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:56.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:07:56.638 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:07:56.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:56.638 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:07:56.638 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:07:56.638 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:56.648 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:07:56.648 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:07:56.648 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:07:56.658 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:07:56.658 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:07:56.658 -07 000000512 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:07:56.658 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:56.668 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:56.668 -07 000000448 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:07:56.668 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 210 ms to get response, and 229 ms overall
17-03-17 20:07:56.668 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:56.668 -07 000000512 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:56.668 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29922, sync = True, waitForSettling = False)
17-03-17 20:07:56.668 -07 000000448 INF: Z Motor: Moving to -0.136974 mm, started at -0.130570 mm, distance = -6.40 um
17-03-17 20:07:56.668 -07 000000512 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:07:56.668 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:07:56.678 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:07:56.688 -07 000000448 INF: FPGA: Xmit ZDACW 29922\n [Z Motor]
17-03-17 20:07:56.698 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:07:57.238 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:07:57.238 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:07:57.238 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:07:57.238 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:07:57.238 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 530 ms to get response, and 567 ms overall
17-03-17 20:07:57.238 -07 000000448 INF: FPGA: 'ZDACW 29922' command took 0 ms to send, 540 ms to get response, and 569 ms overall
17-03-17 20:07:57.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:07:57.238 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 550 ms to get response, and 570 ms overall
17-03-17 20:07:57.248 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:57.248 -07 000000593 INF: FPGA: Recv ZDACR 29922
17-03-17 20:07:57.258 -07 000000448 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:07:57.258 -07 000000448 INF: Z Motor: MoveAbsStepped took 588 ms (did NOT wait for settling yet))
17-03-17 20:07:57.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:57.288 -07 000000448 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:07:57.288 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:07:57.288 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:57.288 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:07:57.288 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 567 ms, distance = 0.845 mm, average velocity = 1.491 mm/sec
17-03-17 20:07:58.238 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:07:58.238 -07 000000593 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:07:58.248 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:07:58.248 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:07:58.258 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.001704,
17-03-17 20:07:58.268 -07 000000512 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:07:58.268 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:07:58.268 -07 000000512 INF: Y Motor: Moved to 69.8633 after 1612 ms (table move)
17-03-17 20:07:58.278 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136974 mm (DAC = 29922)
17-03-17 20:07:58.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.298 -07 000000448 INF: FPGA: Recv ZSGSRD 30610
17-03-17 20:07:58.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:07:58.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.308 -07 000000512 INF: FPGA: Recv ZSGSRD 30615
17-03-17 20:07:58.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30609
17-03-17 20:07:58.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.328 -07 000000593 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:07:58.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:07:58.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30619
17-03-17 20:07:58.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.358 -07 000000512 INF: FPGA: Recv ZSGSRD 30610
17-03-17 20:07:58.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.368 -07 000000608 INF: FPGA: Recv ZSGSRD 30617
17-03-17 20:07:58.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.378 -07 000000448 INF: FPGA: Recv ZSGSRD 30613
17-03-17 20:07:58.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:58.388 -07 000000608 INF: FPGA: Recv ZSGSRD 30614
17-03-17 20:07:58.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.398 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:58.398 -07 000000448 INF: FPGA: Recv ZPIEZORD 26632
17-03-17 20:07:58.408 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -8.8 V.
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30613 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30612 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30609 (-136.2 uncal um), Max = 30619 (-136.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30613, posNoise = 6, negNoise = 4
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: After move to -0.136974, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: Settle wait time = 1611 ms, measure time = 128 ms (allowed 150 ms), total time = 1739 ms
17-03-17 20:07:58.408 -07 000000012 INF: Z Motor: Waiting extra 22 ms after reading position to reach expected total of 150 ms
17-03-17 20:07:58.438 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1999 ms
17-03-17 20:07:58.438 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:07:58.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:58.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:58.448 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:58.458 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:07:58.458 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:58.458 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:58.458 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:58.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:07:58.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:58.458 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:07:58.468 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:07:58.468 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:07:58.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:07:58.528 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:07:58.728 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:07:58.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:07:58.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:07:58.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:07:58.768 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:07:58.768 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 20:07:58.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 20:07:58.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:07:58.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:07:58.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:07:58.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:07:58.868 -07 000000415 INF: Autofocus start
17-03-17 20:07:58.868 -07 000000415 INF: MeasureProfile start
17-03-17 20:07:58.868 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:07:58.868 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:07:58.878 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:07:58.878 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:07:58.878 -07 000000415 INF: MeasureProfile done
17-03-17 20:07:58.878 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:07:58.878 -07 000000415 INF: Autofocus finished
17-03-17 20:07:59.078 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:07:59.078 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:07:59.078 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136987758306863. ----------
17-03-17 20:07:59.078 -07 000000610 INF: Cycle	34	Tile	13	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:07:59.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28446, sync = True, waitForSettling = True)
17-03-17 20:07:59.088 -07 000000610 INF: Z Motor: Moving to -0.130217 mm, started at -0.136988 mm, distance = 6.77 um
17-03-17 20:07:59.088 -07 000000610 INF: FPGA: Xmit ZDACW 28446\n [Z Motor]
17-03-17 20:07:59.088 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:07:59.098 -07 000000610 INF: FPGA: 'ZDACW 28446' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:07:59.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:07:59.098 -07 000000012 INF: FPGA: Recv ZDACR 28446
17-03-17 20:07:59.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:07:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29558
17-03-17 20:07:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.268 -07 000000593 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:07:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.278 -07 000000448 INF: FPGA: Recv ZSGSRD 29559
17-03-17 20:07:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.288 -07 000000012 INF: FPGA: Recv ZSGSRD 29558
17-03-17 20:07:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29561
17-03-17 20:07:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.308 -07 000000593 INF: FPGA: Recv ZSGSRD 29564
17-03-17 20:07:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.318 -07 000000448 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:07:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.328 -07 000000593 INF: FPGA: Recv ZSGSRD 29564
17-03-17 20:07:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.338 -07 000000448 INF: FPGA: Recv ZSGSRD 29554
17-03-17 20:07:59.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:07:59.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29571
17-03-17 20:07:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:07:59.358 -07 000000486 INF: FPGA: Recv ZPIEZORD 25236
17-03-17 20:07:59.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:07:59.368 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.5 V.
17-03-17 20:07:59.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29571 (-129.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:07:59.368 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 10, negNoise = 7
17-03-17 20:07:59.368 -07 000000610 INF: Z Motor: After move to -0.130217, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:07:59.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:07:59.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:07:59.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:07:59.368 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:07:59.368 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:07:59.368 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:07:59.368 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:07:59.368 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:07:59.368 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:07:59.368 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:07:59.368 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:07:59.368 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:07:59.368 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:07:59.378 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:07:59.378 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:07:59.378 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:07:59.378 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:07:59.388 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:07:59.388 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:59.388 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:07:59.388 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:07:59.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28623 150\n [Camera]
17-03-17 20:07:59.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:07:59.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:07:59.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:07:59.998 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:07:59.998 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:07:59.998 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:07:59.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:07:59.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:07:59.998 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:07:59.998 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:07:59.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:08:00.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28623 795
17-03-17 20:08:00.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:00.398 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:08:00.398 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:08:00.398 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:00.398 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:00.398 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:08:00.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:08:00.398 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:08:00.398 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:00.408 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:00.408 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:08:00.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1143
17-03-17 20:08:00.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1143
17-03-17 20:08:00.538 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:00.538 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:00.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:08:00.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1143
17-03-17 20:08:00.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1143
17-03-17 20:08:00.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:00.538 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:00.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:08:00.728 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:08:00.728 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:00.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28623 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-17 20:08:00.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:00.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130229487133731. ------
17-03-17 20:08:00.728 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:00.738 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13660 mm
17-03-17 20:08:00.738 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:00.738 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:08:00.738 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:00.738 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:08:00.738 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29839, sync = True, waitForSettling = False)
17-03-17 20:08:00.738 -07 000000012 INF: Z Motor: Moving to -0.136594 mm, started at -0.130229 mm, distance = -6.36 um
17-03-17 20:08:00.858 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 20:08:00.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:00.868 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:00.878 -07 000000012 INF: FPGA: Xmit ZDACW 29839\n [Z Motor]
17-03-17 20:08:00.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:08:00.938 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:08:00.938 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:00.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:08:00.938 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:08:00.938 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:00.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:00.948 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:08:00.948 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:08:00.958 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:08:01.738 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:08:01.738 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:08:01.738 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:01.738 -07 000000012 INF: FPGA: 'ZDACW 29839' command took 0 ms to send, 851 ms to get response, and 997 ms overall
17-03-17 20:08:01.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 871 ms to get response, and 997 ms overall
17-03-17 20:08:01.738 -07 000000415 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:01.738 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:01.738 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 861 ms to get response, and 874 ms overall
17-03-17 20:08:01.738 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:01.738 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:08:01.738 -07 000000478 INF: FPGA: Recv ZDACR 29839
17-03-17 20:08:01.748 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:01.748 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:01.748 -07 000000012 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-17 20:08:01.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:02.118 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:08:02.118 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:08:02.158 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:02.158 -07 000000478 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:08:02.168 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:08:02.168 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:02.168 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:08:02.168 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-17 20:08:03.118 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:03.118 -07 000000478 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:08:03.128 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:03.128 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:03.148 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:03.148 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:08:03.148 -07 000000415 INF: Y Motor: Moved to 70.6890 after 2410 ms (table move)
17-03-17 20:08:03.148 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136594 mm (DAC = 29839)
17-03-17 20:08:03.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.148 -07 000000012 INF: FPGA: Recv ZSGSRD 30553
17-03-17 20:08:03.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:08:03.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:08:03.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.168 -07 000000415 INF: FPGA: Recv ZSGSRD 30545
17-03-17 20:08:03.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30557
17-03-17 20:08:03.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.188 -07 000000012 INF: FPGA: Recv ZSGSRD 30550
17-03-17 20:08:03.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30555
17-03-17 20:08:03.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.208 -07 000000012 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:08:03.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:08:03.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.228 -07 000000012 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:08:03.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.238 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:03.238 -07 000000478 INF: FPGA: Recv ZSGSRD 30549
17-03-17 20:08:03.248 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.248 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:03.248 -07 000000012 INF: FPGA: Recv ZPIEZORD 26535
17-03-17 20:08:03.258 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -8.8 V.
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30552 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30551 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30545 (-135.8 uncal um), Max = 30557 (-135.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30552, posNoise = 5, negNoise = 7
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: After move to -0.136594, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: Settle wait time = 2412 ms, measure time = 105 ms (allowed 150 ms), total time = 2517 ms
17-03-17 20:08:03.258 -07 000000486 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:03.308 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2570 ms
17-03-17 20:08:03.308 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:03.308 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:03.308 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:03.308 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:03.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:03.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:03.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:03.318 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:03.318 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:03.328 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:08:03.328 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:08:03.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:03.378 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:03.578 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:03.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:03.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:03.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:08:03.618 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.0344,
17-03-17 20:08:03.618 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:03.618 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:03.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 286 ms to get response, and 289 ms overall
17-03-17 20:08:03.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:08:03.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:03.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:08:03.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:08:03.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:03.718 -07 000000012 INF: Autofocus start
17-03-17 20:08:03.718 -07 000000012 INF: MeasureProfile start
17-03-17 20:08:03.718 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:03.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:08:03.728 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:03.728 -07 000000012 INF: MeasureProfile done
17-03-17 20:08:03.728 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:08:03.728 -07 000000012 INF: Autofocus finished
17-03-17 20:08:03.928 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:03.928 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:08:03.928 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136595881366216. ----------
17-03-17 20:08:03.938 -07 000000610 INF: Cycle	34	Tile	14	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:03.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28334, sync = True, waitForSettling = True)
17-03-17 20:08:03.938 -07 000000610 INF: Z Motor: Moving to -0.129705 mm, started at -0.136596 mm, distance = 6.89 um
17-03-17 20:08:03.938 -07 000000610 INF: FPGA: Xmit ZDACW 28334\n [Z Motor]
17-03-17 20:08:03.938 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:08:03.948 -07 000000610 INF: FPGA: 'ZDACW 28334' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:03.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:03.948 -07 000000415 INF: FPGA: Recv ZDACR 28334
17-03-17 20:08:03.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:03.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29482
17-03-17 20:08:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29479
17-03-17 20:08:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29483
17-03-17 20:08:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29479
17-03-17 20:08:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29476
17-03-17 20:08:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29484
17-03-17 20:08:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29478
17-03-17 20:08:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29480
17-03-17 20:08:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29478
17-03-17 20:08:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:04.198 -07 000000415 INF: FPGA: Recv ZSGSRD 29479
17-03-17 20:08:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:04.208 -07 000000561 INF: FPGA: Recv ZPIEZORD 25105
17-03-17 20:08:04.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:04.218 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.6 V.
17-03-17 20:08:04.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29479 (-128.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29476 (-128.9 uncal um), Max = 29484 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:08:04.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 4, negNoise = 4
17-03-17 20:08:04.218 -07 000000610 INF: Z Motor: After move to -0.129705, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:04.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:08:04.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:04.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:04.218 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:04.218 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:04.218 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:04.218 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:04.218 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:04.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:04.218 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:04.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:04.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:08:04.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:04.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:08:04.218 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:04.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:08:04.228 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:04.238 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:08:04.238 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:08:04.238 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:08:04.238 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:08:04.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28511 150\n [Camera]
17-03-17 20:08:04.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:04.848 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:08:04.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:08:04.848 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:04.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:08:04.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:08:04.858 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:04.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:04.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:08:04.868 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:04.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:08:05.048 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28511 795
17-03-17 20:08:05.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:05.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:08:05.258 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:08:05.258 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:05.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:08:05.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:08:05.268 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:05.268 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:08:05.268 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:08:05.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:08:05.278 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:08:05.388 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:05.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:05.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:05.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:05.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:05.398 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:05.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:05.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:08:05.408 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:05.408 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:08:05.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:08:05.588 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:05.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28511 150' command took 2 ms to send, 1333 ms to get response, and 1344 ms overall
17-03-17 20:08:05.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:05.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129709125950248. ------
17-03-17 20:08:05.708 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:05.708 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13643 mm
17-03-17 20:08:05.708 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:05.718 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:08:05.718 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:08:05.718 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:05.718 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:05.718 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:08:05.718 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29804, sync = True, waitForSettling = False)
17-03-17 20:08:05.718 -07 000000478 INF: Z Motor: Moving to -0.136434 mm, started at -0.129709 mm, distance = -6.72 um
17-03-17 20:08:05.718 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:08:05.728 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:05.728 -07 000000459 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:05.728 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:05.728 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:08:05.728 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:05.738 -07 000000478 INF: FPGA: Xmit ZDACW 29804\n [Z Motor]
17-03-17 20:08:05.738 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:08:05.748 -07 000000478 INF: FPGA: 'ZDACW 29804' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:08:05.748 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:05.758 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:05.758 -07 000000551 INF: FPGA: Recv ZDACR 29804
17-03-17 20:08:05.768 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:08:05.768 -07 000000478 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:08:05.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:08:05.788 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:08:05.788 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:05.798 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:05.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:08:05.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:08:05.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:05.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:08:05.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:08:05.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:08:05.928 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:05.928 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:08:06.118 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:08:06.118 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:08:06.158 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:06.158 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:08:06.168 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:08:06.168 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:06.168 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:08:06.168 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 20:08:06.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:07.118 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:07.118 -07 000000478 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:08:07.128 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.128 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:07.148 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:07.148 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:08:07.148 -07 000000459 INF: Y Motor: Moved to 71.5195 after 1432 ms (table move)
17-03-17 20:08:07.148 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136434 mm (DAC = 29804)
17-03-17 20:08:07.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:08:07.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:08:07.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30533
17-03-17 20:08:07.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:07.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.168 -07 000000478 INF: FPGA: Recv ZSGSRD 30528
17-03-17 20:08:07.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30527
17-03-17 20:08:07.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.188 -07 000000478 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:08:07.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.198 -07 000000478 INF: FPGA: Recv ZSGSRD 30532
17-03-17 20:08:07.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30523
17-03-17 20:08:07.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:08:07.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30522
17-03-17 20:08:07.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:07.238 -07 000000478 INF: FPGA: Recv ZSGSRD 30523
17-03-17 20:08:07.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.248 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:07.248 -07 000000478 INF: FPGA: Recv ZPIEZORD 26503
17-03-17 20:08:07.258 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -8.9 V.
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30535 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 8, negNoise = 7
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: After move to -0.136434, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:08:07.258 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:07.308 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:08:07.308 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:07.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:07.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:07.308 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:07.308 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:07.308 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:07.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:07.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:07.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:07.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:07.318 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:07.328 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:08:07.328 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:08:07.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:07.368 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:07.568 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:07.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:07.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:07.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:08:07.608 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:07.608 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:07.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:08:07.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:08:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:08:07.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:08:07.708 -07 000000478 INF: Autofocus start
17-03-17 20:08:07.708 -07 000000478 INF: MeasureProfile start
17-03-17 20:08:07.708 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:07.708 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:07.718 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:08:07.718 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:07.718 -07 000000478 INF: MeasureProfile done
17-03-17 20:08:07.718 -07 000000478 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:08:07.718 -07 000000478 INF: Autofocus finished
17-03-17 20:08:07.918 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:07.918 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:08:07.918 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136435276062672. ----------
17-03-17 20:08:07.918 -07 000000610 INF: Cycle	34	Tile	15	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:07.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28298, sync = True, waitForSettling = True)
17-03-17 20:08:07.928 -07 000000610 INF: Z Motor: Moving to -0.129540 mm, started at -0.136435 mm, distance = 6.90 um
17-03-17 20:08:07.928 -07 000000610 INF: FPGA: Xmit ZDACW 28298\n [Z Motor]
17-03-17 20:08:07.928 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:08:07.938 -07 000000610 INF: FPGA: 'ZDACW 28298' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:07.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:07.938 -07 000000576 INF: FPGA: Recv ZDACR 28298
17-03-17 20:08:07.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:07.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:08.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29456
17-03-17 20:08:08.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29452
17-03-17 20:08:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.118 -07 000000626 INF: FPGA: Recv ZSGSRD 29454
17-03-17 20:08:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29454
17-03-17 20:08:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:08:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.148 -07 000000502 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:08:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29451
17-03-17 20:08:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29452
17-03-17 20:08:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.178 -07 000000626 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:08:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:08.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29455
17-03-17 20:08:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:08.198 -07 000000576 INF: FPGA: Recv ZPIEZORD 25099
17-03-17 20:08:08.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:08.208 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.6 V.
17-03-17 20:08:08.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29454 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29454 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29451 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:08:08.208 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29454, posNoise = 2, negNoise = 3
17-03-17 20:08:08.208 -07 000000610 INF: Z Motor: After move to -0.129540, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:08.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:08:08.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:08.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:08.208 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:08.208 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:08.208 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:08.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:08.208 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:08.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:08.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:08.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:08.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:08:08.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:08.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:08:08.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:08.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:08:08.218 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:08.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:08:08.228 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:08:08.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:08:08.228 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:08:08.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28475 150\n [Camera]
17-03-17 20:08:08.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:08.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:08:08.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:08:08.838 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:08.838 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:08.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:08:08.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:08:08.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:08:08.838 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:08.838 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:08.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:08:08.978 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.027603,
17-03-17 20:08:09.028 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28475 795
17-03-17 20:08:09.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:09.238 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:08:09.238 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:08:09.238 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:09.248 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:08:09.248 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:09.248 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:08:09.248 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:08:09.248 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:09.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:09.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:08:09.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:09.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:09.378 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:09.378 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:09.378 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:08:09.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:09.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:09.378 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:09.378 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:09.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:08:09.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:08:09.778 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:08:09.778 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:09.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:08:09.778 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:08:09.788 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:09.788 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:09.788 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:08:09.788 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:08:09.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:08:09.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-17 20:08:09.808 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:09.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28475 150' command took 2 ms to send, 1570 ms to get response, and 1578 ms overall
17-03-17 20:08:09.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:09.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129542096434562. ------
17-03-17 20:08:09.808 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:10.738 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13548 mm
17-03-17 20:08:10.738 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:11.738 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:11.738 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1920 ms to get response, and 1925 ms overall
17-03-17 20:08:11.738 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:11.738 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:08:11.738 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:08:11.748 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:12.738 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29596, sync = True, waitForSettling = False)
17-03-17 20:08:12.738 -07 000000012 INF: Z Motor: Moving to -0.135482 mm, started at -0.129542 mm, distance = -5.94 um
17-03-17 20:08:12.738 -07 000000012 INF: FPGA: Xmit ZDACW 29596\n [Z Motor]
17-03-17 20:08:13.738 -07 000000486 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:08:13.738 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:13.738 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:13.738 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:08:13.738 -07 000000012 INF: FPGA: 'ZDACW 29596' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:08:13.738 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:13.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:13.738 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-17 20:08:13.738 -07 000000551 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:13.738 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:13.738 -07 000000551 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:08:13.738 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 20:08:13.738 -07 000000576 INF: FPGA: Recv ZDACR 29596
17-03-17 20:08:13.748 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:13.748 -07 000000012 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 20:08:13.748 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:14.118 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 20:08:14.118 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:08:14.158 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:14.158 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:08:14.168 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:08:14.168 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:14.168 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:08:14.168 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 20:08:14.358 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.027603,
17-03-17 20:08:15.118 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:15.118 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:08:15.128 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:15.128 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:15.148 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:15.148 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:08:15.148 -07 000000551 INF: Y Motor: Moved to 72.3501 after 3412 ms (table move)
17-03-17 20:08:15.148 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135482 mm (DAC = 29596)
17-03-17 20:08:15.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.158 -07 000000415 INF: FPGA: Recv ZSGSRD 30390
17-03-17 20:08:15.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:08:15.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.158 -07 000000551 INF: FPGA: Recv ZSGSRD 30375
17-03-17 20:08:15.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30385
17-03-17 20:08:15.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30376
17-03-17 20:08:15.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.188 -07 000000561 INF: FPGA: Recv ZSGSRD 30379
17-03-17 20:08:15.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.198 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.198 -07 000000576 INF: FPGA: Recv ZSGSRD 30379
17-03-17 20:08:15.208 -07 000000448 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.208 -07 000000551 INF: FPGA: Recv ZSGSRD 30378
17-03-17 20:08:15.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.218 -07 000000012 INF: FPGA: Recv ZSGSRD 30376
17-03-17 20:08:15.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30377
17-03-17 20:08:15.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.238 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:15.238 -07 000000415 INF: FPGA: Recv ZSGSRD 30386
17-03-17 20:08:15.248 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.248 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:15.248 -07 000000551 INF: FPGA: Recv ZPIEZORD 26355
17-03-17 20:08:15.258 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -8.9 V.
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30380 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30378 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30375 (-134.7 uncal um), Max = 30390 (-134.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30380, posNoise = 10, negNoise = 5
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: After move to -0.135482, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: Settle wait time = 2415 ms, measure time = 104 ms (allowed 150 ms), total time = 2519 ms
17-03-17 20:08:15.258 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:15.308 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4566 ms
17-03-17 20:08:15.308 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:15.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:15.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:15.308 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:15.308 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:15.308 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:15.308 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:15.308 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:08:15.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:15.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:15.308 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:15.328 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:08:15.328 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:08:15.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:15.368 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:15.568 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:15.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:15.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:15.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:08:15.608 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:15.608 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:15.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:08:15.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:08:15.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:15.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:08:15.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:08:15.708 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:15.708 -07 000000448 INF: Autofocus start
17-03-17 20:08:15.708 -07 000000448 INF: MeasureProfile start
17-03-17 20:08:15.708 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:15.718 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:15.718 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:15.718 -07 000000448 INF: MeasureProfile done
17-03-17 20:08:15.718 -07 000000448 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:08:15.718 -07 000000448 INF: Autofocus finished
17-03-17 20:08:15.918 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:15.918 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:08:15.918 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135490916877833. ----------
17-03-17 20:08:15.918 -07 000000610 INF: Cycle	34	Tile	16	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:15.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28103, sync = True, waitForSettling = True)
17-03-17 20:08:15.928 -07 000000610 INF: Z Motor: Moving to -0.128647 mm, started at -0.135491 mm, distance = 6.84 um
17-03-17 20:08:15.928 -07 000000610 INF: FPGA: Xmit ZDACW 28103\n [Z Motor]
17-03-17 20:08:15.928 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:08:15.938 -07 000000610 INF: FPGA: 'ZDACW 28103' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:15.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:15.938 -07 000000448 INF: FPGA: Recv ZDACR 28103
17-03-17 20:08:15.948 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:15.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.098 -07 000000561 INF: FPGA: Recv ZSGSRD 29312
17-03-17 20:08:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29318
17-03-17 20:08:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.118 -07 000000459 INF: FPGA: Recv ZSGSRD 29309
17-03-17 20:08:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.128 -07 000000012 INF: FPGA: Recv ZSGSRD 29317
17-03-17 20:08:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.138 -07 000000561 INF: FPGA: Recv ZSGSRD 29309
17-03-17 20:08:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.148 -07 000000012 INF: FPGA: Recv ZSGSRD 29314
17-03-17 20:08:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.158 -07 000000475 INF: FPGA: Recv ZSGSRD 29320
17-03-17 20:08:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29310
17-03-17 20:08:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.178 -07 000000012 INF: FPGA: Recv ZSGSRD 29319
17-03-17 20:08:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:16.188 -07 000000551 INF: FPGA: Recv ZSGSRD 29312
17-03-17 20:08:16.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:16.198 -07 000000551 INF: FPGA: Recv ZPIEZORD 24965
17-03-17 20:08:16.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:16.208 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.6 V.
17-03-17 20:08:16.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29313 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29309 (-127.8 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:08:16.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 6, negNoise = 5
17-03-17 20:08:16.208 -07 000000610 INF: Z Motor: After move to -0.128647, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:16.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:08:16.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:16.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:16.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:16.208 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:16.208 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:16.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:16.208 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:16.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:16.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:08:16.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:16.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:08:16.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:16.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:08:16.218 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:16.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:08:16.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:16.218 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:08:16.218 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:08:16.228 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:08:16.228 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:08:16.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28280 150\n [Camera]
17-03-17 20:08:16.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:16.748 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:16.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:08:16.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:08:16.838 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:16.838 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:16.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:08:16.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:08:16.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:08:16.838 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:16.848 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:16.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:08:17.028 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28280 795
17-03-17 20:08:17.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:17.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:08:17.218 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:08:17.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:08:17.218 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:08:17.218 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:17.218 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:17.228 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:08:17.228 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:08:17.228 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:08:17.238 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:08:17.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:17.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:17.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:17.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:17.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:08:17.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:17.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:17.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:17.378 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:17.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:08:17.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:08:17.568 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:17.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28280 150' command took 2 ms to send, 1335 ms to get response, and 1342 ms overall
17-03-17 20:08:17.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:17.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128642706734716. ------
17-03-17 20:08:17.578 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:17.578 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13522 mm
17-03-17 20:08:17.578 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:17.578 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:17.578 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:08:17.578 -07 000000551 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 20:08:17.578 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29539, sync = True, waitForSettling = False)
17-03-17 20:08:17.578 -07 000000415 INF: Z Motor: Moving to -0.135221 mm, started at -0.128643 mm, distance = -6.58 um
17-03-17 20:08:17.588 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:17.588 -07 000000415 INF: FPGA: Xmit ZDACW 29539\n [Z Motor]
17-03-17 20:08:17.588 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:08:17.598 -07 000000415 INF: FPGA: 'ZDACW 29539' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:08:17.598 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:17.598 -07 000000459 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:08:17.608 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:17.608 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:08:17.608 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:17.608 -07 000000551 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:17.608 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:08:17.618 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:17.618 -07 000000576 INF: FPGA: Recv ZDACR 29539
17-03-17 20:08:17.628 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:08:17.628 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:08:17.628 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:17.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:08:17.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:08:17.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:17.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:08:17.778 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:08:17.778 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:17.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:17.788 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:08:17.788 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:08:17.788 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:08:17.808 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:17.808 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:08:17.998 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 20:08:17.998 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 257 ms to get response, and 398 ms overall
17-03-17 20:08:18.038 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:18.038 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:08:18.048 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:08:18.048 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:18.048 -07 000000551 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:08:18.048 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 20:08:18.998 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:18.998 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:08:19.008 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:19.008 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:19.028 -07 000000551 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:19.028 -07 000000551 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:08:19.028 -07 000000551 INF: Y Motor: Moved to 73.1763 after 1447 ms (table move)
17-03-17 20:08:19.028 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135221 mm (DAC = 29539)
17-03-17 20:08:19.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.028 -07 000000561 INF: FPGA: Recv ZSGSRD 30346
17-03-17 20:08:19.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:08:19.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.038 -07 000000593 INF: FPGA: Recv ZSGSRD 30337
17-03-17 20:08:19.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30331
17-03-17 20:08:19.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.058 -07 000000551 INF: FPGA: Recv ZSGSRD 30333
17-03-17 20:08:19.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.068 -07 000000561 INF: FPGA: Recv ZSGSRD 30341
17-03-17 20:08:19.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.078 -07 000000561 INF: FPGA: Recv ZSGSRD 30348
17-03-17 20:08:19.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.098 -07 000000561 INF: FPGA: Recv ZSGSRD 30335
17-03-17 20:08:19.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:08:19.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.108 -07 000000551 INF: FPGA: Recv ZSGSRD 30333
17-03-17 20:08:19.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30338
17-03-17 20:08:19.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:19.128 -07 000000593 INF: FPGA: Recv ZSGSRD 30342
17-03-17 20:08:19.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.138 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:19.138 -07 000000593 INF: FPGA: Recv ZPIEZORD 26340
17-03-17 20:08:19.148 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.507 V. Piezo Error = -8.8 V.
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30338 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30338 (-134.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30331 (-134.4 uncal um), Max = 30348 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30338, posNoise = 10, negNoise = 7
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: After move to -0.135221, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: Settle wait time = 1451 ms, measure time = 114 ms (allowed 150 ms), total time = 1565 ms
17-03-17 20:08:19.148 -07 000000486 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:19.188 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:08:19.188 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:19.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:19.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:19.188 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:19.188 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:19.188 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:19.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:19.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:19.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:19.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:08:19.198 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:19.208 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:08:19.208 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:08:19.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:19.248 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:19.448 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:19.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:19.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:19.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:08:19.488 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:19.488 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:19.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:08:19.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 20:08:19.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:08:19.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 20:08:19.688 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:19.688 -07 000000626 INF: Autofocus start
17-03-17 20:08:19.688 -07 000000626 INF: MeasureProfile start
17-03-17 20:08:19.688 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:19.698 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:08:19.698 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:19.698 -07 000000626 INF: MeasureProfile done
17-03-17 20:08:19.698 -07 000000626 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 20:08:19.698 -07 000000626 INF: Autofocus finished
17-03-17 20:08:19.728 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.009895,
17-03-17 20:08:19.898 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:19.898 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:08:19.898 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135221099967879. ----------
17-03-17 20:08:19.898 -07 000000610 INF: Cycle	34	Tile	17	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:19.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28048, sync = True, waitForSettling = True)
17-03-17 20:08:19.908 -07 000000610 INF: Z Motor: Moving to -0.128396 mm, started at -0.135221 mm, distance = 6.83 um
17-03-17 20:08:19.908 -07 000000610 INF: FPGA: Xmit ZDACW 28048\n [Z Motor]
17-03-17 20:08:19.908 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:08:19.918 -07 000000610 INF: FPGA: 'ZDACW 28048' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:19.918 -07 000000512 INF: FPGA: Recv ZDACR 28048
17-03-17 20:08:19.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:19.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.078 -07 000000480 INF: FPGA: Recv ZSGSRD 29283
17-03-17 20:08:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.088 -07 000000448 INF: FPGA: Recv ZSGSRD 29278
17-03-17 20:08:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.098 -07 000000502 INF: FPGA: Recv ZSGSRD 29277
17-03-17 20:08:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29277
17-03-17 20:08:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29272
17-03-17 20:08:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29276
17-03-17 20:08:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29272
17-03-17 20:08:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.148 -07 000000512 INF: FPGA: Recv ZSGSRD 29273
17-03-17 20:08:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29278
17-03-17 20:08:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:20.168 -07 000000626 INF: FPGA: Recv ZSGSRD 29273
17-03-17 20:08:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:20.178 -07 000000448 INF: FPGA: Recv ZPIEZORD 24905
17-03-17 20:08:20.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:20.188 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.6 V.
17-03-17 20:08:20.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29276 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29276 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29272 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:08:20.188 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29276, posNoise = 7, negNoise = 4
17-03-17 20:08:20.188 -07 000000610 INF: Z Motor: After move to -0.128396, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:20.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:08:20.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:20.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:20.188 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:20.188 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:20.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:20.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:20.188 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:20.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:20.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:20.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:20.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:08:20.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:20.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:08:20.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:20.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:08:20.188 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:20.208 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:08:20.208 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:08:20.208 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:08:20.208 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:08:20.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28224 150\n [Camera]
17-03-17 20:08:20.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:20.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:08:20.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:08:20.818 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:20.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:08:20.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:08:20.828 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:20.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:20.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:08:20.838 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:20.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:08:21.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28224 795
17-03-17 20:08:21.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:21.228 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:08:21.228 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:08:21.228 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:21.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:08:21.228 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:08:21.228 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:21.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:08:21.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:08:21.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:08:21.238 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:08:21.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:21.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:21.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:21.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:21.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:21.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:21.368 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:21.368 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:08:21.378 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:21.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:08:21.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:08:21.548 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:21.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28224 150' command took 2 ms to send, 1329 ms to get response, and 1341 ms overall
17-03-17 20:08:21.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:21.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128398586673329. ------
17-03-17 20:08:21.678 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:21.678 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13469 mm
17-03-17 20:08:21.678 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:21.678 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:08:21.678 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:21.678 -07 000000448 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:08:21.678 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29422, sync = True, waitForSettling = False)
17-03-17 20:08:21.678 -07 000000012 INF: Z Motor: Moving to -0.134685 mm, started at -0.128399 mm, distance = -6.29 um
17-03-17 20:08:21.688 -07 000000012 INF: FPGA: Xmit ZDACW 29422\n [Z Motor]
17-03-17 20:08:21.688 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:08:21.688 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:08:21.698 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:21.698 -07 000000012 INF: FPGA: 'ZDACW 29422' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:21.698 -07 000000547 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:08:21.708 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:21.708 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:08:21.708 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:21.708 -07 000000448 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:21.708 -07 000000448 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:08:21.718 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:21.718 -07 000000593 INF: FPGA: Recv ZDACR 29422
17-03-17 20:08:21.728 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:08:21.728 -07 000000012 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:08:21.728 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:21.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:21.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:08:21.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:08:21.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:21.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:08:21.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:21.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:08:21.768 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:21.778 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:08:21.778 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:08:21.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:08:21.908 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:21.908 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:08:22.098 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 20:08:22.098 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:08:22.128 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:22.138 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:08:22.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:08:22.138 -07 000000448 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:22.138 -07 000000448 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:08:22.138 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 20:08:23.088 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:23.088 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:08:23.098 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:23.098 -07 000000448 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:23.108 -07 000000448 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:23.108 -07 000000448 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:08:23.108 -07 000000448 INF: Y Motor: Moved to 74.0083 after 1428 ms (table move)
17-03-17 20:08:23.118 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134685 mm (DAC = 29422)
17-03-17 20:08:23.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.118 -07 000000480 INF: FPGA: Recv ZSGSRD 30254
17-03-17 20:08:23.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:23.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.128 -07 000000480 INF: FPGA: Recv ZSGSRD 30258
17-03-17 20:08:23.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.138 -07 000000480 INF: FPGA: Recv ZSGSRD 30252
17-03-17 20:08:23.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.148 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.148 -07 000000480 INF: FPGA: Recv ZSGSRD 30261
17-03-17 20:08:23.158 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.158 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.158 -07 000000448 INF: FPGA: Recv ZSGSRD 30262
17-03-17 20:08:23.168 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.168 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.168 -07 000000448 INF: FPGA: Recv ZSGSRD 30262
17-03-17 20:08:23.178 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.178 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30257
17-03-17 20:08:23.188 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.188 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.188 -07 000000480 INF: FPGA: Recv ZSGSRD 30249
17-03-17 20:08:23.198 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.198 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.198 -07 000000480 INF: FPGA: Recv ZSGSRD 30252
17-03-17 20:08:23.208 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:23.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30257
17-03-17 20:08:23.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.218 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:23.218 -07 000000480 INF: FPGA: Recv ZPIEZORD 26272
17-03-17 20:08:23.228 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -8.8 V.
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30256 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30257 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30249 (-133.9 uncal um), Max = 30262 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30256, posNoise = 6, negNoise = 7
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: After move to -0.134685, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: Settle wait time = 1430 ms, measure time = 111 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:08:23.228 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:23.268 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 20:08:23.268 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:23.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:23.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:23.268 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:23.268 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:23.268 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:23.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:23.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:08:23.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:23.278 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:23.278 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:23.278 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:08:23.278 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:08:23.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:23.328 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:23.528 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:23.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:23.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:23.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:08:23.568 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:23.568 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:23.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:08:23.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:08:23.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:23.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:08:23.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:08:23.668 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:23.668 -07 000000448 INF: Autofocus start
17-03-17 20:08:23.668 -07 000000448 INF: MeasureProfile start
17-03-17 20:08:23.668 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:23.678 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:08:23.678 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:23.678 -07 000000448 INF: MeasureProfile done
17-03-17 20:08:23.678 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:08:23.678 -07 000000448 INF: Autofocus finished
17-03-17 20:08:23.878 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:23.878 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:08:23.878 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134694314572255. ----------
17-03-17 20:08:23.888 -07 000000610 INF: Cycle	34	Tile	18	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:23.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27946, sync = True, waitForSettling = True)
17-03-17 20:08:23.888 -07 000000610 INF: Z Motor: Moving to -0.127929 mm, started at -0.134694 mm, distance = 6.77 um
17-03-17 20:08:23.888 -07 000000610 INF: FPGA: Xmit ZDACW 27946\n [Z Motor]
17-03-17 20:08:23.888 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:08:23.898 -07 000000610 INF: FPGA: 'ZDACW 27946' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:08:23.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:23.898 -07 000000448 INF: FPGA: Recv ZDACR 27946
17-03-17 20:08:23.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:23.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.058 -07 000000448 INF: FPGA: Recv ZSGSRD 29204
17-03-17 20:08:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:24.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.068 -07 000000448 INF: FPGA: Recv ZSGSRD 29200
17-03-17 20:08:24.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.078 -07 000000608 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:08:24.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:08:24.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29204
17-03-17 20:08:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:08:24.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29204
17-03-17 20:08:24.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.128 -07 000000448 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:08:24.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.138 -07 000000608 INF: FPGA: Recv ZSGSRD 29196
17-03-17 20:08:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:24.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29202
17-03-17 20:08:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:24.158 -07 000000608 INF: FPGA: Recv ZPIEZORD 24862
17-03-17 20:08:24.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:24.168 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.5 V.
17-03-17 20:08:24.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29204 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29196 (-127.1 uncal um), Max = 29209 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:08:24.168 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29204, posNoise = 5, negNoise = 8
17-03-17 20:08:24.168 -07 000000610 INF: Z Motor: After move to -0.127929, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:24.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:08:24.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:24.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:24.168 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:24.168 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:24.168 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:24.168 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:24.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:24.168 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:24.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:08:24.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:24.168 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 20:08:24.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:24.178 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:08:24.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:24.178 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:24.178 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:24.188 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:08:24.188 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:08:24.188 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:08:24.188 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:08:24.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28123 150\n [Camera]
17-03-17 20:08:24.388 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:24.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:08:24.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:08:24.798 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:24.798 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:24.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:08:24.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:08:24.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:08:24.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:24.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:24.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:08:24.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28123 797
17-03-17 20:08:25.098 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.008536,
17-03-17 20:08:25.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:08:25.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:08:25.178 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:08:25.178 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:25.188 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:08:25.188 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:08:25.188 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:25.188 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:25.188 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:25.188 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:08:25.198 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:08:25.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:25.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:25.338 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:25.338 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:25.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:08:25.338 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:25.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:25.348 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:25.348 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:25.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:08:25.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-17 20:08:25.528 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:25.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28123 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-17 20:08:25.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:08:25.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127936043399122. ------
17-03-17 20:08:25.538 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13436 mm
17-03-17 20:08:25.538 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:08:25.538 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:25.538 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:08:25.538 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:08:25.538 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29350, sync = True, waitForSettling = False)
17-03-17 20:08:25.538 -07 000000448 INF: Z Motor: Moving to -0.134356 mm, started at -0.127936 mm, distance = -6.42 um
17-03-17 20:08:25.538 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:25.548 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:25.548 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:25.548 -07 000000415 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:08:25.558 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:08:25.558 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:25.558 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:08:25.558 -07 000000547 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:08:25.558 -07 000000448 INF: FPGA: Xmit ZDACW 29350\n [Z Motor]
17-03-17 20:08:25.558 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 20:08:25.568 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:08:25.568 -07 000000448 INF: FPGA: 'ZDACW 29350' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:08:25.578 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:08:25.588 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:25.588 -07 000000475 INF: FPGA: Recv ZDACR 29350
17-03-17 20:08:25.598 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:08:25.598 -07 000000448 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:08:25.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:08:25.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:08:25.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:25.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:08:25.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:08:25.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:25.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:25.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:08:25.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:08:25.758 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:08:25.768 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:08:25.768 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:08:25.948 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:08:25.948 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:08:25.978 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:25.978 -07 000000608 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:08:25.988 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:25.988 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:25.988 -07 000000547 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:08:25.988 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 20:08:26.748 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 33. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:26.938 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:26.938 -07 000000593 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:08:26.948 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:26.948 -07 000000547 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:26.958 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:26.958 -07 000000547 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:08:26.958 -07 000000547 INF: Y Motor: Moved to 74.8325 after 1417 ms (table move)
17-03-17 20:08:26.958 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134356 mm (DAC = 29350)
17-03-17 20:08:26.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:26.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:08:26.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:08:26.968 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:26.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:08:26.978 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:26.978 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:26.978 -07 000000547 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:08:26.988 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:26.988 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:26.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:08:26.998 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:26.998 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:26.998 -07 000000502 INF: FPGA: Recv ZSGSRD 30208
17-03-17 20:08:27.008 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.008 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:08:27.018 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.018 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.018 -07 000000502 INF: FPGA: Recv ZSGSRD 30206
17-03-17 20:08:27.028 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.028 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.028 -07 000000547 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:08:27.038 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.038 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.038 -07 000000502 INF: FPGA: Recv ZSGSRD 30210
17-03-17 20:08:27.048 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.048 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.048 -07 000000547 INF: FPGA: Recv ZSGSRD 30205
17-03-17 20:08:27.058 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.058 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:27.058 -07 000000502 INF: FPGA: Recv ZPIEZORD 26176
17-03-17 20:08:27.068 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.479 V. Piezo Error = -8.9 V.
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30205 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30206 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30199 (-133.5 uncal um), Max = 30211 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30205, posNoise = 6, negNoise = 6
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: After move to -0.134356, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 20:08:27.068 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:08:27.118 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 20:08:27.118 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:08:27.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:27.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:27.118 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:27.118 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:27.118 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:08:27.118 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:27.118 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:08:27.118 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:08:27.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:08:27.128 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:08:27.138 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:08:27.138 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:08:27.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:08:27.188 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:08:27.388 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:08:27.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:08:27.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:08:27.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:08:27.428 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:08:27.428 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:08:27.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:08:27.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 20:08:27.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:27.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:08:27.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:08:27.528 -07 000000502 INF: Autofocus start
17-03-17 20:08:27.528 -07 000000502 INF: MeasureProfile start
17-03-17 20:08:27.528 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:08:27.528 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:08:27.538 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:08:27.538 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:08:27.538 -07 000000502 INF: MeasureProfile done
17-03-17 20:08:27.538 -07 000000502 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 20:08:27.538 -07 000000502 INF: Autofocus finished
17-03-17 20:08:27.738 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:08:27.738 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:08:27.738 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134366679753025. ----------
17-03-17 20:08:27.738 -07 000000610 INF: Cycle	34	Tile	19	Exposure Settings		A	410	G	197	T	197	C	410
17-03-17 20:08:27.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27857, sync = True, waitForSettling = True)
17-03-17 20:08:27.748 -07 000000610 INF: Z Motor: Moving to -0.127521 mm, started at -0.134367 mm, distance = 6.85 um
17-03-17 20:08:27.748 -07 000000610 INF: FPGA: Xmit ZDACW 27857\n [Z Motor]
17-03-17 20:08:27.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:08:27.758 -07 000000610 INF: FPGA: 'ZDACW 27857' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:27.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:08:27.758 -07 000000478 INF: FPGA: Recv ZDACR 27857
17-03-17 20:08:27.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:08:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.918 -07 000000478 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:08:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.928 -07 000000478 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:08:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:08:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29139
17-03-17 20:08:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.958 -07 000000618 INF: FPGA: Recv ZSGSRD 29139
17-03-17 20:08:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.968 -07 000000478 INF: FPGA: Recv ZSGSRD 29143
17-03-17 20:08:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29141
17-03-17 20:08:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.988 -07 000000502 INF: FPGA: Recv ZSGSRD 29140
17-03-17 20:08:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:27.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29139
17-03-17 20:08:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:08:28.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29137
17-03-17 20:08:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:28.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:08:28.018 -07 000000502 INF: FPGA: Recv ZPIEZORD 24807
17-03-17 20:08:28.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:28.028 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -9.5 V.
17-03-17 20:08:28.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29140 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29140 (-126.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29137 (-126.7 uncal um), Max = 29143 (-126.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:08:28.028 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29140, posNoise = 3, negNoise = 3
17-03-17 20:08:28.028 -07 000000610 INF: Z Motor: After move to -0.127521, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:08:28.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:08:28.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:08:28.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:08:28.028 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:08:28.028 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:08:28.028 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:08:28.028 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:08:28.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:08:28.028 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:08:28.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:08:28.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:08:28.028 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 20:08:28.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:08:28.038 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:08:28.038 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:08:28.038 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:08:28.038 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:08:28.048 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:08:28.048 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:08:28.048 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:08:28.048 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:08:28.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28033 150\n [Camera]
17-03-17 20:08:28.248 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:08:28.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-17 20:08:28.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-17 20:08:28.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:28.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:28.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:08:28.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-17 20:08:28.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-17 20:08:28.658 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:28.658 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:28.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:08:28.848 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28033 795
17-03-17 20:08:28.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-17 20:08:29.048 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:08:29.048 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:08:29.048 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:29.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:08:29.048 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:08:29.048 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:29.058 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:08:29.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:08:29.058 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:08:29.068 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:08:29.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-17 20:08:29.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-17 20:08:29.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:08:29.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:08:29.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:08:29.198 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-17 20:08:29.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-17 20:08:29.208 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:08:29.208 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:08:29.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:08:29.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:08:29.398 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:08:29.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28033 150' command took 2 ms to send, 1340 ms to get response, and 1344 ms overall
17-03-17 20:08:29.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:08:29.588 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:08:29.588 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:29.588 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:08:29.588 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:08:29.588 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:08:29.588 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:08:29.598 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:08:29.598 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:08:29.598 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:08:29.598 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:08:29.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:08:29.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:08:29.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:08:29.818 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 20:08:29.818 -07 000000610 INF: Imaging Cycle 34: ScanTilesCommand Cycle 34 time end. Duration was 169300 ms.
17-03-17 20:08:29.818 -07 000000610 INF: =================== Cycle #34 ===================
17-03-17 20:08:29.818 -07 000000610 INF: ===================  ===================
17-03-17 20:08:29.818 -07 000000448 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:08:29.818 -07 000000459 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 20:08:29.828 -07 000000448 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:29.828 -07 000000448 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 20:08:29.828 -07 000000448 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 34, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.140565, AmbientTemperature: 18.93495, FlowCellCompartmentTemperature: 21.97946, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.69916, GreenLEDSensorTemperature: 26.30978, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 20:08:29.848 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.