17-03-17 20:08:29.898 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:08:29.908 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:08:29.908 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:08:29.908 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:29.908 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:08:29.918 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:08:29.918 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:29.918 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:08:29.918 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:08:29.918 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:08:30.028 -07 000000459 INF: FPGA: Recv YMVTO 154378 871
17-03-17 20:08:30.028 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 20:08:30.028 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:08:30.028 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:08:30.028 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 20:08:30.478 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.018051,
17-03-17 20:08:31.748 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:08:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=467, R2=482, Total=949. Warn if over 250 bubbles per interval.
17-03-17 20:08:33.028 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:08:33.028 -07 000000512 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:08:33.038 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:08:33.038 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:08:33.048 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:08:33.048 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:08:33.048 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3145 ms
17-03-17 20:08:33.058 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 60° ===================
17-03-17 20:08:33.058 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:08:33.058 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:08:33.058 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:08:33.068 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:08:33.068 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:08:33.068 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-17 20:08:33.078 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:08:33.078 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 60° ===================
17-03-17 20:08:33.078 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:08:33.078 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:08:33.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:33.108 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:08:33.108 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:08:33.108 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:08:33.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:08:33.428 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:08:33.428 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:08:33.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:33.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:08:33.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:08:33.598 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:08:33.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:08:33.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:33.628 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:08:33.628 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:08:33.628 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:08:33.758 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:08:33.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:35.838 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.015368,
17-03-17 20:08:36.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:08:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=468, R2=483, Total=951. Warn if over 250 bubbles per interval.
17-03-17 20:08:36.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:36.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:37.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:37.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:37.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:37.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:37.858 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:08:37.858 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:08:37.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:38.018 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:08:38.018 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:08:38.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:38.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:08:38.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:08:38.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:08:38.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:08:38.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:38.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:38.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:38.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:08:38.798 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:08:40.018 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:08:40.018 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:08:40.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:40.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:08:40.038 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:08:40.038 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:08:40.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:08:40.188 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:08:40.188 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:08:40.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:40.258 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:08:40.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:08:40.358 -07 000000610 INF: =================== Cycle #35, Pumping Reagent CMS (4) ===================
17-03-17 20:08:40.358 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:08:40.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:40.388 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:08:40.388 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:08:40.388 -07 000000610 INF: =================== Cycle #35, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:08:40.518 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:08:40.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:41.208 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.015368,
17-03-17 20:08:41.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 20:08:41.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=471, R2=483, Total=954. Warn if over 250 bubbles per interval.
17-03-17 20:08:41.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:42.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:42.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:42.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:42.478 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:08:42.478 -07 000000610 INF: =================== Cycle #35, Pumping Reagent CMS (4) ===================
17-03-17 20:08:42.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:42.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:08:42.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:08:42.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:42.798 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:08:42.798 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:08:42.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:08:42.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:08:42.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:43.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:43.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:43.418 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:08:43.418 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:08:44.638 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:08:44.638 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:08:44.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:44.658 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:08:44.658 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:08:44.658 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:08:44.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:08:44.828 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:08:44.828 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:08:44.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:08:44.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:08:44.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:08:44.998 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:08:44.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:08:44.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:45.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:08:45.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:08:45.028 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:08:45.158 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:08:45.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:46.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:46.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:46.098 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:08:46.098 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:08:46.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:46.258 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:08:46.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:08:46.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:46.418 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:08:46.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:08:46.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:08:46.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:08:46.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:46.578 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.990831,
17-03-17 20:08:46.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 7
17-03-17 20:08:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=7, R2=10, Total=17. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=478, R2=493, Total=971. Warn if over 250 bubbles per interval.
17-03-17 20:08:47.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:47.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:47.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:08:47.038 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:08:47.038 -07 000000608 INF: WaitCommand(10000) start
17-03-17 20:08:47.038 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:08:47.038 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:08:48.258 -07 000000459 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:08:48.258 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 20:08:48.288 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:08:48.288 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:08:48.418 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:08:48.458 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:49.988 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:50.018 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:50.438 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 20:08:50.468 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:08:50.468 -07 000000459 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:08:50.468 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:08:50.468 -07 000000459 INF: ===================  ===================
17-03-17 20:08:51.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:08:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=478, R2=494, Total=972. Warn if over 250 bubbles per interval.
17-03-17 20:08:51.948 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.970374,
17-03-17 20:08:56.758 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:08:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=478, R2=495, Total=973. Warn if over 250 bubbles per interval.
17-03-17 20:08:57.048 -07 000000608 INF: WaitCommand(10000) end
17-03-17 20:08:57.048 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:08:57.048 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:08:57.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:08:57.078 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:08:57.078 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:08:57.078 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:08:57.208 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:08:57.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:08:57.318 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.003063,
17-03-17 20:09:01.758 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:01.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=13, R2=11, Total=24. Bubbles this run: R1=478, R2=495, Total=973. Warn if over 250 bubbles per interval.
17-03-17 20:09:02.688 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.023489,
17-03-17 20:09:03.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:03.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:03.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:03.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:04.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:04.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:04.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:04.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:05.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:05.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:05.208 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:09:05.208 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:09:05.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:05.888 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:09:05.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:09:06.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:06.048 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:09:06.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:09:06.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:09:06.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:09:06.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:06.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:06.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:06.668 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:09:06.668 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:09:06.758 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 15 R1 18
17-03-17 20:09:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=18, R2=15, Total=33. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=496, R2=510, Total=1006. Warn if over 250 bubbles per interval.
17-03-17 20:09:07.888 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:09:07.888 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:09:07.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:09:07.908 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:09:07.908 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:09:07.908 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:09:08.058 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.019446,
17-03-17 20:09:08.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:09:08.138 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:09:08.138 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:09:08.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:09:08.208 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:09:08.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:09:08.308 -07 000000610 INF: =================== Cycle #35, Pumping Reagent IMT (1) ===================
17-03-17 20:09:08.308 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:09:08.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:08.338 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:09:08.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:09:08.338 -07 000000610 INF: =================== Cycle #35, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:09:08.468 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:09:08.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:09.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:09.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:10.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:10.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:10.428 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:09:10.428 -07 000000610 INF: =================== Cycle #35, Pumping Reagent IMT (1) ===================
17-03-17 20:09:10.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:10.588 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:09:10.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:09:10.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:10.748 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:09:10.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:09:10.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:09:10.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:09:10.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:11.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:11.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:11.368 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:09:11.368 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:09:11.758 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 20:09:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:12.588 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:09:12.588 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:09:12.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:09:12.608 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:09:12.608 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:09:12.608 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:09:12.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:09:12.858 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:09:12.858 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:09:12.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:09:12.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:09:12.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:09:13.028 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:09:13.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:09:13.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:13.058 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:09:13.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:09:13.058 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:09:13.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:09:13.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:13.438 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.99219,
17-03-17 20:09:14.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:14.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:14.128 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:09:14.128 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:09:14.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:14.288 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:09:14.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:09:14.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:14.448 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:09:14.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:09:14.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:09:14.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:09:14.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:15.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:15.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:15.068 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:09:15.068 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:09:15.068 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 65° ===================
17-03-17 20:09:15.068 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:09:15.068 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:09:15.068 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:09:15.078 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:09:15.078 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:09:15.078 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 20:09:15.088 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:09:15.088 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 65° ===================
17-03-17 20:09:15.088 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:09:15.088 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:09:16.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:18.798 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.979922,
17-03-17 20:09:21.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:24.168 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.971733,
17-03-17 20:09:26.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:29.538 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.98264,
17-03-17 20:09:31.758 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:34.908 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.997626,
17-03-17 20:09:36.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:40.858 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.990831,
17-03-17 20:09:41.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:41.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:45.098 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:09:45.098 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:09:45.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:09:45.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:45.228 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:09:45.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:09:45.228 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:09:45.358 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:09:45.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:45.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:45.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:45.968 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 20:09:45.968 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:09:46.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:46.128 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:09:46.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:09:46.238 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.007176,
17-03-17 20:09:46.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:09:46.288 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:09:46.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:09:46.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:09:46.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:09:46.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:46.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:46.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:46.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:46.908 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:09:46.908 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:09:46.908 -07 000000502 INF: WaitCommand(30000) start
17-03-17 20:09:46.908 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:09:46.908 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:09:48.128 -07 000000459 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:09:48.128 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 20:09:48.158 -07 000000459 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:09:48.158 -07 000000459 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:09:48.288 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:09:48.328 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:50.668 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:50.698 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:09:51.118 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 20:09:51.148 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:09:51.148 -07 000000459 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:09:51.148 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:09:51.148 -07 000000459 INF: ===================  ===================
17-03-17 20:09:51.598 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.02213,
17-03-17 20:09:51.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:56.758 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:09:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:09:56.968 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.008536,
17-03-17 20:10:01.758 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:01.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:10:02.338 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.983999,
17-03-17 20:10:06.758 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:10:07.718 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.981281,
17-03-17 20:10:11.758 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:10:13.908 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.037119,
17-03-17 20:10:16.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=497, R2=512, Total=1009. Warn if over 250 bubbles per interval.
17-03-17 20:10:16.918 -07 000000502 INF: WaitCommand(30000) end
17-03-17 20:10:16.918 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 22° ===================
17-03-17 20:10:16.918 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:10:16.918 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:10:16.928 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:10:16.928 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:10:16.928 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:10:16.928 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 20:10:16.938 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:10:16.938 -07 000000610 INF: =================== Cycle #35, Flow Cell Temp 22° ===================
17-03-17 20:10:16.938 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:10:16.938 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:10:16.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:10:16.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:16.978 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:10:16.978 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:10:16.978 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:10:17.108 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:10:17.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:19.278 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.001704,
17-03-17 20:10:20.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:20.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:20.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:20.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:21.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:21.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:21.208 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:10:21.208 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:10:21.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:21.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:10:21.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:10:21.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:21.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:10:21.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:10:21.528 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:10:21.658 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:10:21.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:21.758 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:10:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:22.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:22.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:22.148 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:10:22.148 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:10:23.368 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:10:23.368 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:10:23.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:23.388 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:10:23.388 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:10:23.388 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:10:23.538 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:10:23.558 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:10:23.558 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:10:23.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:23.628 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:10:23.628 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:10:23.728 -07 000000610 INF: =================== Cycle #35, Pumping Reagent USM (2) ===================
17-03-17 20:10:23.728 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:10:23.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:23.758 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:10:23.758 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:10:23.758 -07 000000610 INF: =================== Cycle #35, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:10:23.888 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:10:23.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:24.658 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.027603,
17-03-17 20:10:25.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:25.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:25.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:25.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:25.848 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:10:25.848 -07 000000610 INF: =================== Cycle #35, Pumping Reagent USM (2) ===================
17-03-17 20:10:25.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:26.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:10:26.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:10:26.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:26.958 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:26.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:10:26.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:10:26.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:10:27.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:10:27.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:27.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:27.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:27.588 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:10:27.588 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:10:28.008 -07 000000610 INF: AsyncDelayTimer waited 419ms
17-03-17 20:10:28.008 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:10:28.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:28.028 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:10:28.028 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:10:28.028 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:10:28.178 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:10:28.198 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:10:28.198 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:10:28.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:28.268 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:10:28.268 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:10:28.368 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:10:28.368 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:10:28.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:28.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:10:28.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:10:28.398 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:10:28.528 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:10:28.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:29.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:29.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:29.468 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:10:29.468 -07 000000610 INF: =================== Cycle #35, Pumping Reagent PR2 (3) ===================
17-03-17 20:10:29.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:29.628 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:10:29.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:10:29.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:10:29.788 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:10:29.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:10:29.788 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:10:29.918 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:10:29.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:30.018 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.003063,
17-03-17 20:10:30.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:30.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:30.408 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:10:30.408 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:10:30.408 -07 000000459 INF: WaitCommand(10000) start
17-03-17 20:10:30.408 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:10:30.408 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:10:31.628 -07 000000475 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:10:31.628 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 20:10:31.658 -07 000000475 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:10:31.658 -07 000000475 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:10:31.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:31.788 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:10:31.828 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:33.358 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:33.388 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:10:33.808 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 20:10:33.838 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:10:33.838 -07 000000475 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:10:33.838 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:10:33.838 -07 000000475 INF: ===================  ===================
17-03-17 20:10:35.388 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.016692,
17-03-17 20:10:36.758 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:40.418 -07 000000459 INF: WaitCommand(10000) end
17-03-17 20:10:40.418 -07 000000610 INF: =================== Cycle #35, Imaging ===================
17-03-17 20:10:40.418 -07 000000610 INF: Imaging Cycle 35: ScanTilesCommand Cycle 35 time start.
17-03-17 20:10:40.418 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:10:40.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:40.448 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:10:40.448 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:10:40.448 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:10:40.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:10:40.758 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.978563,
17-03-17 20:10:40.768 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:10:40.768 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:10:40.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:10:40.838 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:10:40.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:40.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:40.838 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:10:40.838 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:40.838 -07 000000459 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:10:40.848 -07 000000431 INF: FPGA: Recv EXLED1ON 
17-03-17 20:10:40.848 -07 000000459 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:10:40.848 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:10:40.848 -07 000000431 INF: FPGA: Recv EXLED1ADCR 23123
17-03-17 20:10:40.858 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:40.858 -07 000000459 INF: RedLED: Using Red data: Photodiode ADC 23123 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-17 20:10:40.858 -07 000000459 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:10:40.858 -07 000000475 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:10:40.868 -07 000000459 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:40.868 -07 000000459 INF: RedLED: LED was on for 19 ms
17-03-17 20:10:40.868 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 20:10:40.868 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:10:40.868 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:40.868 -07 000000459 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:10:40.868 -07 000000576 INF: FPGA: Recv EXLED2ON 
17-03-17 20:10:40.878 -07 000000459 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:10:40.878 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:10:40.878 -07 000000475 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 20:10:40.888 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:40.888 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 20:10:40.888 -07 000000459 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:10:40.888 -07 000000486 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:10:40.898 -07 000000459 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:40.898 -07 000000459 INF: GreenLED: LED was on for 19 ms
17-03-17 20:10:40.898 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:10:40.898 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:10:40.898 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 20:10:40.908 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:10:40.908 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:10:41.408 -07 000000459 INF: FPGA: Recv EMOUT
17-03-17 20:10:41.408 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:10:41.408 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:10:41.408 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 20:10:41.418 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:10:41.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:10:41.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127524893822049. ------
17-03-17 20:10:41.418 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:41.418 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17944 mm
17-03-17 20:10:41.418 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:10:41.418 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:10:41.418 -07 000000486 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:10:41.418 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:41.418 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39198, sync = True, waitForSettling = False)
17-03-17 20:10:41.418 -07 000000576 INF: Z Motor: Moving to -0.179437 mm, started at -0.127525 mm, distance = -51.91 um
17-03-17 20:10:41.428 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:10:41.428 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:41.428 -07 000000431 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:10:41.438 -07 000000486 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:10:41.438 -07 000000486 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:41.438 -07 000000486 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:10:41.438 -07 000000486 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:10:41.438 -07 000000576 INF: FPGA: Xmit ZDACW 39198\n [Z Motor]
17-03-17 20:10:41.438 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:10:41.448 -07 000000576 INF: FPGA: 'ZDACW 39198' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:10:41.448 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:10:41.458 -07 000000486 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:10:41.468 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:41.468 -07 000000608 INF: FPGA: Recv ZDACR 39198
17-03-17 20:10:41.478 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:10:41.478 -07 000000576 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:10:41.648 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:10:41.648 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:10:41.758 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:41.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:43.138 -07 000000608 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:10:43.138 -07 000000486 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 20:10:43.138 -07 000000486 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:10:43.138 -07 000000486 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:10:43.138 -07 000000486 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 20:10:45.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:45.988 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:10:45.998 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:45.998 -07 000000486 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:46.018 -07 000000486 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:10:46.018 -07 000000486 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:10:46.018 -07 000000486 INF: Y Motor: Moved to 59.9106 after 4595 ms
17-03-17 20:10:46.018 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179437 mm (DAC = 39198)
17-03-17 20:10:46.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.018 -07 000000475 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:10:46.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:10:46.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.028 -07 000000576 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:10:46.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.038 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.038 -07 000000576 INF: FPGA: Recv ZSGSRD 37219
17-03-17 20:10:46.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.048 -07 000000475 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:10:46.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.058 -07 000000475 INF: FPGA: Recv ZSGSRD 37219
17-03-17 20:10:46.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.068 -07 000000486 INF: FPGA: Recv ZSGSRD 37216
17-03-17 20:10:46.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.078 -07 000000486 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:10:46.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.088 -07 000000475 INF: FPGA: Recv ZSGSRD 37222
17-03-17 20:10:46.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.098 -07 000000486 INF: FPGA: Recv ZSGSRD 37218
17-03-17 20:10:46.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.108 -07 000000486 INF: FPGA: Recv ZSGSRD 37224
17-03-17 20:10:46.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.118 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:46.118 -07 000000576 INF: FPGA: Recv ZPIEZORD 33680
17-03-17 20:10:46.128 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37221 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37220 (-178.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37213 (-178.5 uncal um), Max = 37229 (-178.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37221, posNoise = 8, negNoise = 8
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: After move to -0.179437, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: Settle wait time = 4597 ms, measure time = 104 ms (allowed 150 ms), total time = 4701 ms
17-03-17 20:10:46.128 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:10:46.138 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.973092,
17-03-17 20:10:46.178 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 20:10:46.178 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:10:46.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:46.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:46.178 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:46.178 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:46.178 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:10:46.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:46.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:46.178 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:10:46.208 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:10:46.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:10:46.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:10:46.208 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:10:46.218 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:10:46.218 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:10:46.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:10:46.268 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:10:46.468 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:10:46.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:10:46.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:10:46.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:10:46.508 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:10:46.508 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:10:46.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:10:46.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:10:46.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:46.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:10:46.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:10:46.608 -07 000000438 INF: Image SNR check: start
17-03-17 20:10:46.608 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:46.608 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:46.618 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:10:46.618 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:10:46.618 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=64.93]
17-03-17 20:10:46.618 -07 000000438 INF: Autofocus start
17-03-17 20:10:46.618 -07 000000438 INF: MeasureProfile start
17-03-17 20:10:46.638 -07 000000438 INF: MeasureProfile done
17-03-17 20:10:46.638 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:10:46.638 -07 000000438 INF: Autofocus finished
17-03-17 20:10:46.758 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:46.818 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:10:46.818 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:10:46.818 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17943895213962. ----------
17-03-17 20:10:46.818 -07 000000610 INF: Cycle	35	Tile	1	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:10:46.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37695, sync = True, waitForSettling = True)
17-03-17 20:10:46.828 -07 000000610 INF: Z Motor: Moving to -0.172557 mm, started at -0.179439 mm, distance = 6.88 um
17-03-17 20:10:46.828 -07 000000610 INF: FPGA: Xmit ZDACW 37695\n [Z Motor]
17-03-17 20:10:46.828 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:10:46.838 -07 000000610 INF: FPGA: 'ZDACW 37695' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:10:46.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:46.838 -07 000000576 INF: FPGA: Recv ZDACR 37695
17-03-17 20:10:46.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:46.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:10:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:46.998 -07 000000475 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:10:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.008 -07 000000431 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:10:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.018 -07 000000462 INF: FPGA: Recv ZSGSRD 36152
17-03-17 20:10:47.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36147
17-03-17 20:10:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.038 -07 000000475 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:10:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.048 -07 000000431 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:10:47.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:10:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.068 -07 000000576 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:10:47.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.078 -07 000000475 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:10:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:47.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:10:47.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:47.098 -07 000000462 INF: FPGA: Recv ZPIEZORD 32242
17-03-17 20:10:47.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:47.108 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.6 V.
17-03-17 20:10:47.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36152 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36153 (-171.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36147 (-171.7 uncal um), Max = 36154 (-171.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:10:47.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36152, posNoise = 2, negNoise = 5
17-03-17 20:10:47.108 -07 000000610 INF: Z Motor: After move to -0.172557, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:47.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:10:47.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:47.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:47.108 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:47.108 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:47.108 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:10:47.108 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:47.108 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:10:47.108 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:10:47.108 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:10:47.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:10:47.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:10:47.108 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:10:47.118 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:10:47.118 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:10:47.128 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:10:47.128 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:10:47.138 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:10:47.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:10:47.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:10:47.138 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:10:47.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:10:47.148 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 20:10:47.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37871 150\n [Camera]
17-03-17 20:10:47.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:10:47.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:10:47.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:10:47.758 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:47.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:10:47.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:10:47.768 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:47.768 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:47.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:10:47.778 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:47.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 20:10:47.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37871 796
17-03-17 20:10:48.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:10:48.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:10:48.168 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:10:48.168 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:48.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:10:48.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:10:48.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:48.178 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:10:48.178 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:10:48.178 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:10:48.188 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:10:48.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:10:48.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:10:48.298 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:48.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:10:48.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:10:48.308 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:48.308 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:48.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:10:48.308 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:48.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-17 20:10:48.498 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:10:48.498 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:10:48.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37871 150' command took 2 ms to send, 1342 ms to get response, and 1345 ms overall
17-03-17 20:10:48.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:10:48.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172571469360077. ------
17-03-17 20:10:48.498 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:48.498 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17897 mm
17-03-17 20:10:48.498 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:10:48.508 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:10:48.508 -07 000000476 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:10:48.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:48.508 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:10:48.508 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:48.508 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39096, sync = True, waitForSettling = False)
17-03-17 20:10:48.508 -07 000000608 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:10:48.508 -07 000000502 INF: Z Motor: Moving to -0.178970 mm, started at -0.172571 mm, distance = -6.40 um
17-03-17 20:10:48.518 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:10:48.518 -07 000000476 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:48.518 -07 000000476 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:10:48.518 -07 000000476 INF: Y Motor: Moving 1331 steps2
17-03-17 20:10:48.518 -07 000000502 INF: FPGA: Xmit ZDACW 39096\n [Z Motor]
17-03-17 20:10:48.518 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:10:48.528 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:10:48.528 -07 000000502 INF: FPGA: 'ZDACW 39096' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:10:48.538 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:10:48.548 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:48.548 -07 000000382 INF: FPGA: Recv ZDACR 39096
17-03-17 20:10:48.558 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:10:48.558 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:10:48.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:10:48.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:10:48.708 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:48.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:10:48.718 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:10:48.718 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:48.718 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:10:48.718 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:10:48.718 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:10:48.728 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:10:48.728 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:10:48.728 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 20:10:48.908 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:10:48.908 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:10:48.938 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:48.948 -07 000000462 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:10:48.948 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:10:48.948 -07 000000476 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:48.948 -07 000000476 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:10:48.948 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 20:10:49.898 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:49.898 -07 000000438 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:10:49.908 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:49.908 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:49.928 -07 000000476 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:10:49.928 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:10:49.928 -07 000000476 INF: Y Motor: Moved to 60.7334 after 1419 ms (table move)
17-03-17 20:10:49.928 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178970 mm (DAC = 39096)
17-03-17 20:10:49.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.928 -07 000000459 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:10:49.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:10:49.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.938 -07 000000475 INF: FPGA: Recv ZSGSRD 37142
17-03-17 20:10:49.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.948 -07 000000462 INF: FPGA: Recv ZSGSRD 37145
17-03-17 20:10:49.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.958 -07 000000424 INF: FPGA: Recv ZSGSRD 37151
17-03-17 20:10:49.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.968 -07 000000502 INF: FPGA: Recv ZSGSRD 37145
17-03-17 20:10:49.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.978 -07 000000458 INF: FPGA: Recv ZSGSRD 37151
17-03-17 20:10:49.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.988 -07 000000623 INF: FPGA: Recv ZSGSRD 37155
17-03-17 20:10:49.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:49.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:49.998 -07 000000382 INF: FPGA: Recv ZSGSRD 37152
17-03-17 20:10:50.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:50.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:50.008 -07 000000476 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:10:50.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:50.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:50.018 -07 000000429 INF: FPGA: Recv ZSGSRD 37146
17-03-17 20:10:50.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:50.028 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:50.028 -07 000000608 INF: FPGA: Recv ZPIEZORD 33565
17-03-17 20:10:50.038 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.966 V. Piezo Error = -8.0 V.
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37148 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37147 (-178.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37142 (-178.0 uncal um), Max = 37155 (-178.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37148, posNoise = 7, negNoise = 6
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: After move to -0.178970, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: Settle wait time = 1419 ms, measure time = 105 ms (allowed 150 ms), total time = 1524 ms
17-03-17 20:10:50.038 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:10:50.088 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:10:50.088 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:10:50.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:50.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:50.088 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:50.088 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:50.098 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:10:50.098 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:50.098 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:50.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:10:50.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:10:50.098 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:10:50.108 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:10:50.108 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:10:50.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:10:50.158 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:10:50.358 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:10:50.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:10:50.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:10:50.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:10:50.398 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:10:50.398 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:10:50.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:10:50.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:10:50.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:50.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:10:50.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:10:50.598 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:50.598 -07 000000623 INF: Autofocus start
17-03-17 20:10:50.598 -07 000000623 INF: MeasureProfile start
17-03-17 20:10:50.608 -07 000000623 INF: MeasureProfile done
17-03-17 20:10:50.608 -07 000000623 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:10:50.608 -07 000000623 INF: Autofocus finished
17-03-17 20:10:50.608 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:50.608 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 20:10:50.618 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:10:50.818 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:10:50.818 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:10:50.818 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178969984653271. ----------
17-03-17 20:10:50.818 -07 000000610 INF: Cycle	35	Tile	2	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:10:50.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37611, sync = True, waitForSettling = True)
17-03-17 20:10:50.828 -07 000000610 INF: Z Motor: Moving to -0.172172 mm, started at -0.178970 mm, distance = 6.80 um
17-03-17 20:10:50.828 -07 000000610 INF: FPGA: Xmit ZDACW 37611\n [Z Motor]
17-03-17 20:10:50.828 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:10:50.838 -07 000000610 INF: FPGA: 'ZDACW 37611' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:10:50.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:50.838 -07 000000608 INF: FPGA: Recv ZDACR 37611
17-03-17 20:10:50.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:50.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:10:50.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:50.998 -07 000000608 INF: FPGA: Recv ZSGSRD 36087
17-03-17 20:10:51.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:51.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36094
17-03-17 20:10:51.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.018 -07 000000623 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:10:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.028 -07 000000608 INF: FPGA: Recv ZSGSRD 36094
17-03-17 20:10:51.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.038 -07 000000623 INF: FPGA: Recv ZSGSRD 36088
17-03-17 20:10:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.048 -07 000000608 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:10:51.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36093
17-03-17 20:10:51.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.068 -07 000000608 INF: FPGA: Recv ZSGSRD 36087
17-03-17 20:10:51.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.078 -07 000000608 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:10:51.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:51.088 -07 000000623 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:10:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:51.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:51.098 -07 000000608 INF: FPGA: Recv ZPIEZORD 32150
17-03-17 20:10:51.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:51.108 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-17 20:10:51.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36087 (-171.3 uncal um), Max = 36096 (-171.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:10:51.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 4, negNoise = 5
17-03-17 20:10:51.108 -07 000000610 INF: Z Motor: After move to -0.172172, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:51.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:10:51.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:51.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:51.108 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:51.108 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:51.108 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:10:51.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:51.108 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:10:51.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:10:51.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:51.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:10:51.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:10:51.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:10:51.118 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:10:51.118 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:10:51.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:10:51.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:10:51.128 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:10:51.128 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:10:51.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:10:51.138 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:10:51.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37788 150\n [Camera]
17-03-17 20:10:51.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:10:51.498 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.997626,
17-03-17 20:10:51.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:10:51.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:10:51.748 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:51.748 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:51.748 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1448079688, 0x0, 391868352) start.
17-03-17 20:10:51.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:10:51.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:10:51.748 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:51.748 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:51.748 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1483501952, 0x0, 418435064) start.
17-03-17 20:10:51.758 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:52.048 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37788 796
17-03-17 20:10:52.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:10:52.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1483501952, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:10:52.128 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:10:52.128 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:52.138 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:10:52.138 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1448079688, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:10:52.138 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:10:52.138 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:52.138 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:10:52.138 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:10:52.138 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:10:52.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:10:52.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:10:52.288 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:52.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:10:52.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:10:52.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:52.298 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:52.298 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:10:52.298 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:52.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:10:52.478 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:10:52.478 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:10:52.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37788 150' command took 2 ms to send, 1335 ms to get response, and 1344 ms overall
17-03-17 20:10:52.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:10:52.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172186016631571. ------
17-03-17 20:10:52.488 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:52.488 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17885 mm
17-03-17 20:10:52.488 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:10:52.488 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:52.488 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39069, sync = True, waitForSettling = False)
17-03-17 20:10:52.488 -07 000000431 INF: Z Motor: Moving to -0.178846 mm, started at -0.172186 mm, distance = -6.66 um
17-03-17 20:10:52.488 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:10:52.488 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:10:52.498 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:52.498 -07 000000431 INF: FPGA: Xmit ZDACW 39069\n [Z Motor]
17-03-17 20:10:52.498 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:10:52.508 -07 000000431 INF: FPGA: 'ZDACW 39069' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:10:52.508 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:52.508 -07 000000459 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:10:52.518 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:10:52.518 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:10:52.518 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:52.518 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:10:52.518 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:10:52.528 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:52.528 -07 000000459 INF: FPGA: Recv ZDACR 39069
17-03-17 20:10:52.538 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:10:52.538 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:10:52.538 -07 000000431 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:10:52.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:10:52.688 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:10:52.688 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:52.698 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:10:52.698 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:10:52.698 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:52.698 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:10:52.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:10:52.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:10:52.708 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:10:52.718 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:10:52.718 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:10:52.908 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:10:52.908 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:10:52.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:52.948 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:10:52.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:10:52.958 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:52.958 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:10:52.958 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 20:10:53.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:53.908 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:10:53.918 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:53.918 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:53.938 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:10:53.938 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:10:53.938 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-17 20:10:53.938 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178846 mm (DAC = 39069)
17-03-17 20:10:53.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.938 -07 000000623 INF: FPGA: Recv ZSGSRD 37137
17-03-17 20:10:53.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:10:53.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.948 -07 000000576 INF: FPGA: Recv ZSGSRD 37117
17-03-17 20:10:53.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:53.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.958 -07 000000429 INF: FPGA: Recv ZSGSRD 37120
17-03-17 20:10:53.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:53.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.968 -07 000000576 INF: FPGA: Recv ZSGSRD 37134
17-03-17 20:10:53.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:53.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.978 -07 000000429 INF: FPGA: Recv ZSGSRD 37136
17-03-17 20:10:53.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:53.988 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:53.988 -07 000000476 INF: FPGA: Recv ZSGSRD 37133
17-03-17 20:10:53.998 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:53.998 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:54.738 -07 000000431 INF: FPGA: Recv ZSGSRD 37134
17-03-17 20:10:54.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 730 ms to get response, and 740 ms overall
17-03-17 20:10:54.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:54.738 -07 000000459 INF: FPGA: Recv ZSGSRD 37132
17-03-17 20:10:54.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:54.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:54.748 -07 000000576 INF: FPGA: Recv ZSGSRD 37123
17-03-17 20:10:54.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:54.758 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:54.758 -07 000000459 INF: FPGA: Recv ZSGSRD 37126
17-03-17 20:10:54.768 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:54.768 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:54.768 -07 000000576 INF: FPGA: Recv ZPIEZORD 33567
17-03-17 20:10:54.778 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37129 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37117 (-177.9 uncal um), Max = 37137 (-178.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37129, posNoise = 8, negNoise = 12
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: After move to -0.178846, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: Settle wait time = 1449 ms, measure time = 835 ms (allowed 150 ms), total time = 2284 ms
17-03-17 20:10:54.778 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 835 ms, longer than max expected time of 150 ms
17-03-17 20:10:54.778 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2290 ms
17-03-17 20:10:54.778 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:10:54.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:54.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:54.778 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:54.778 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:54.778 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:10:54.778 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:54.778 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:10:54.778 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:10:54.788 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:10:54.788 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:10:54.788 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:10:54.788 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:10:54.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:10:54.838 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:10:55.038 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:10:55.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:10:55.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:10:55.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 20:10:55.078 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:10:55.078 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:10:55.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:10:55.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:10:55.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:55.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:10:55.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:10:55.178 -07 000000429 INF: Autofocus start
17-03-17 20:10:55.178 -07 000000429 INF: MeasureProfile start
17-03-17 20:10:55.178 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:55.178 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:55.188 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:10:55.188 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:10:55.198 -07 000000429 INF: MeasureProfile done
17-03-17 20:10:55.198 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:10:55.198 -07 000000429 INF: Autofocus finished
17-03-17 20:10:55.388 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:10:55.388 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 20:10:55.398 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178847924622578. ----------
17-03-17 20:10:55.398 -07 000000610 INF: Cycle	35	Tile	3	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:10:55.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37584, sync = True, waitForSettling = True)
17-03-17 20:10:55.398 -07 000000610 INF: Z Motor: Moving to -0.172049 mm, started at -0.178848 mm, distance = 6.80 um
17-03-17 20:10:55.398 -07 000000610 INF: FPGA: Xmit ZDACW 37584\n [Z Motor]
17-03-17 20:10:55.398 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:10:55.408 -07 000000610 INF: FPGA: 'ZDACW 37584' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:10:55.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:55.408 -07 000000608 INF: FPGA: Recv ZDACR 37584
17-03-17 20:10:55.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:10:55.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36073
17-03-17 20:10:55.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.578 -07 000000569 INF: FPGA: Recv ZSGSRD 36082
17-03-17 20:10:55.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.588 -07 000000459 INF: FPGA: Recv ZSGSRD 36063
17-03-17 20:10:55.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.598 -07 000000569 INF: FPGA: Recv ZSGSRD 36069
17-03-17 20:10:55.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.608 -07 000000475 INF: FPGA: Recv ZSGSRD 36078
17-03-17 20:10:55.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:10:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36071
17-03-17 20:10:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.628 -07 000000475 INF: FPGA: Recv ZSGSRD 36075
17-03-17 20:10:55.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.638 -07 000000569 INF: FPGA: Recv ZSGSRD 36071
17-03-17 20:10:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.648 -07 000000424 INF: FPGA: Recv ZSGSRD 36077
17-03-17 20:10:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:55.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36081
17-03-17 20:10:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:55.668 -07 000000424 INF: FPGA: Recv ZPIEZORD 32147
17-03-17 20:10:55.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:55.678 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.7 V.
17-03-17 20:10:55.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36074 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36063 (-171.1 uncal um), Max = 36082 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:10:55.678 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36074, posNoise = 8, negNoise = 11
17-03-17 20:10:55.678 -07 000000610 INF: Z Motor: After move to -0.172049, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:55.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:10:55.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:55.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:55.678 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:55.678 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:55.678 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:10:55.678 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:10:55.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:10:55.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:55.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:10:55.678 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:10:55.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:55.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:10:55.688 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:10:55.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:10:55.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:10:55.688 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:10:55.698 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:10:55.698 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:10:55.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:10:55.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:10:55.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37761 150\n [Camera]
17-03-17 20:10:55.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:10:56.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:10:56.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:10:56.308 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:56.308 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:56.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:10:56.308 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:10:56.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:10:56.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:56.308 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:56.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:10:56.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37761 796
17-03-17 20:10:56.648 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:10:56.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:10:56.698 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:10:56.698 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:56.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:10:56.708 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:10:56.708 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:56.708 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:10:56.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:10:56.708 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:10:56.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:10:56.758 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:10:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:10:56.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:10:56.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:10:56.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:10:56.848 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:10:56.848 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:10:56.848 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:10:56.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:10:56.858 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:10:56.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:10:56.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:10:56.868 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.963579,
17-03-17 20:10:57.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:10:57.038 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:10:57.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37761 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-17 20:10:57.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:10:57.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.17207038081302. ------
17-03-17 20:10:57.048 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:57.048 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17799 mm
17-03-17 20:10:57.048 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:10:57.048 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:10:57.048 -07 000000458 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:10:57.048 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:57.048 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38882, sync = True, waitForSettling = False)
17-03-17 20:10:57.048 -07 000000569 INF: Z Motor: Moving to -0.177990 mm, started at -0.172070 mm, distance = -5.92 um
17-03-17 20:10:57.058 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:10:57.058 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:10:57.068 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:57.068 -07 000000459 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:10:57.078 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:10:57.078 -07 000000458 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:57.078 -07 000000569 INF: FPGA: Xmit ZDACW 38882\n [Z Motor]
17-03-17 20:10:57.078 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:10:57.078 -07 000000458 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:10:57.078 -07 000000458 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:10:57.088 -07 000000569 INF: FPGA: 'ZDACW 38882' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:10:57.088 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:57.088 -07 000000462 INF: FPGA: Recv ZDACR 38882
17-03-17 20:10:57.098 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:10:57.098 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:57.098 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:10:57.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:10:57.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:10:57.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:57.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:10:57.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:10:57.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:57.258 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:10:57.258 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:10:57.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:10:57.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:10:57.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:10:57.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:10:57.468 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:10:57.468 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:10:57.508 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:57.508 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:10:57.518 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:10:57.518 -07 000000458 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:57.518 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:10:57.518 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.139 mm/sec
17-03-17 20:10:58.468 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:10:58.468 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:10:58.478 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:58.478 -07 000000458 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:10:58.498 -07 000000458 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:10:58.498 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:10:58.498 -07 000000458 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-17 20:10:58.498 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177990 mm (DAC = 38882)
17-03-17 20:10:58.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36996
17-03-17 20:10:58.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:10:58.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.508 -07 000000502 INF: FPGA: Recv ZSGSRD 36992
17-03-17 20:10:58.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.518 -07 000000627 INF: FPGA: Recv ZSGSRD 37002
17-03-17 20:10:58.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.528 -07 000000424 INF: FPGA: Recv ZSGSRD 37002
17-03-17 20:10:58.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.538 -07 000000429 INF: FPGA: Recv ZSGSRD 36999
17-03-17 20:10:58.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.548 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36996
17-03-17 20:10:58.558 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.558 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.558 -07 000000475 INF: FPGA: Recv ZSGSRD 36993
17-03-17 20:10:58.568 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.568 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.568 -07 000000424 INF: FPGA: Recv ZSGSRD 36997
17-03-17 20:10:58.578 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.578 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.578 -07 000000569 INF: FPGA: Recv ZSGSRD 36991
17-03-17 20:10:58.588 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.588 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:58.588 -07 000000438 INF: FPGA: Recv ZSGSRD 36993
17-03-17 20:10:58.598 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.598 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:58.598 -07 000000623 INF: FPGA: Recv ZPIEZORD 33369
17-03-17 20:10:58.608 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.0 V.
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36996 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36996 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36991 (-177.1 uncal um), Max = 37002 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36996, posNoise = 6, negNoise = 5
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: After move to -0.177990, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:10:58.608 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:10:58.658 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:10:58.658 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:10:58.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:58.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:58.658 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:58.658 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:58.658 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:10:58.658 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:58.658 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:58.658 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:10:58.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:10:58.668 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:10:58.678 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:10:58.678 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:10:58.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:10:58.718 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:10:58.918 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:10:58.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:10:58.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:10:58.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 20:10:58.958 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:10:58.958 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:10:58.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:10:59.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:10:59.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:10:59.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:10:59.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:10:59.058 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:10:59.058 -07 000000627 INF: Autofocus start
17-03-17 20:10:59.058 -07 000000627 INF: MeasureProfile start
17-03-17 20:10:59.058 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:10:59.068 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:10:59.068 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:10:59.078 -07 000000627 INF: MeasureProfile done
17-03-17 20:10:59.078 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:10:59.078 -07 000000627 INF: Autofocus finished
17-03-17 20:10:59.268 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:10:59.268 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:10:59.278 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177993504407723. ----------
17-03-17 20:10:59.278 -07 000000610 INF: Cycle	35	Tile	4	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:10:59.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37361, sync = True, waitForSettling = True)
17-03-17 20:10:59.278 -07 000000610 INF: Z Motor: Moving to -0.171028 mm, started at -0.177994 mm, distance = 6.97 um
17-03-17 20:10:59.278 -07 000000610 INF: FPGA: Xmit ZDACW 37361\n [Z Motor]
17-03-17 20:10:59.278 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:10:59.288 -07 000000610 INF: FPGA: 'ZDACW 37361' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:10:59.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:10:59.288 -07 000000431 INF: FPGA: Recv ZDACR 37361
17-03-17 20:10:59.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:10:59.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.448 -07 000000476 INF: FPGA: Recv ZSGSRD 35912
17-03-17 20:10:59.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:10:59.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:10:59.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35908
17-03-17 20:10:59.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35910
17-03-17 20:10:59.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.488 -07 000000576 INF: FPGA: Recv ZSGSRD 35918
17-03-17 20:10:59.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35919
17-03-17 20:10:59.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.508 -07 000000424 INF: FPGA: Recv ZSGSRD 35921
17-03-17 20:10:59.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35912
17-03-17 20:10:59.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:10:59.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:10:59.538 -07 000000627 INF: FPGA: Recv ZSGSRD 35913
17-03-17 20:10:59.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:10:59.548 -07 000000623 INF: FPGA: Recv ZPIEZORD 31933
17-03-17 20:10:59.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:10:59.558 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.8 V.
17-03-17 20:10:59.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35914 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35912 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35908 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:10:59.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35914, posNoise = 7, negNoise = 6
17-03-17 20:10:59.558 -07 000000610 INF: Z Motor: After move to -0.171028, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:10:59.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:10:59.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:10:59.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:10:59.568 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:10:59.568 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:10:59.568 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:10:59.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:10:59.568 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:10:59.568 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:10:59.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:10:59.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:10:59.568 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:10:59.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:10:59.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:10:59.568 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:10:59.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:10:59.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:10:59.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:10:59.578 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:10:59.588 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:10:59.588 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:10:59.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37538 150\n [Camera]
17-03-17 20:10:59.788 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:11:00.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:00.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:00.208 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:00.208 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:00.208 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2325938392, 0x0, 391868352) start.
17-03-17 20:11:00.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:00.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:00.208 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:00.208 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:00.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2361360656, 0x0, 418435064) start.
17-03-17 20:11:00.398 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37538 796
17-03-17 20:11:00.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:00.588 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2325938392, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:11:00.588 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2361360656, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:00.588 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:11:00.588 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:00.588 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:00.588 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:00.588 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:00.588 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:11:00.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:00.598 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:11:00.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:00.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:00.748 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:00.748 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:00.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:11:00.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:00.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:00.748 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:00.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:00.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:11:00.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:00.938 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:00.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37538 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:11:00.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:00.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171042506870338. ------
17-03-17 20:11:00.938 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:00.938 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17746 mm
17-03-17 20:11:00.938 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:00.948 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:00.948 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:11:00.948 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38766, sync = True, waitForSettling = False)
17-03-17 20:11:00.948 -07 000000438 INF: Z Motor: Moving to -0.177459 mm, started at -0.171043 mm, distance = -6.42 um
17-03-17 20:11:00.948 -07 000000438 INF: FPGA: Xmit ZDACW 38766\n [Z Motor]
17-03-17 20:11:00.948 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:11:00.948 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:11:00.948 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:11:00.958 -07 000000438 INF: FPGA: 'ZDACW 38766' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:00.958 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:00.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:00.968 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:11:00.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:11:00.978 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:00.978 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:00.978 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:00.978 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:11:00.978 -07 000000459 INF: FPGA: Recv ZDACR 38766
17-03-17 20:11:00.988 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:00.988 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:11:00.988 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:01.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:11:01.138 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:11:01.138 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:01.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:11:01.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:11:01.138 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:01.138 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:01.148 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:11:01.148 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:11:01.148 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:11:01.158 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:01.158 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:11:01.358 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:11:01.358 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:11:01.398 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:01.398 -07 000000429 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:11:01.408 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:01.408 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:01.408 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:11:01.408 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 20:11:01.758 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:01.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:02.238 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.99219,
17-03-17 20:11:02.358 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:02.358 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:11:02.368 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:02.368 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:02.388 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:02.388 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:02.388 -07 000000462 INF: Y Motor: Moved to 63.2241 after 1438 ms (table move)
17-03-17 20:11:02.388 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177459 mm (DAC = 38766)
17-03-17 20:11:02.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.398 -07 000000462 INF: FPGA: Recv ZSGSRD 36908
17-03-17 20:11:02.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:02.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.398 -07 000000462 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:11:02.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:02.408 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.408 -07 000000627 INF: FPGA: Recv ZSGSRD 36910
17-03-17 20:11:02.418 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.418 -07 000000431 INF: FPGA: Recv ZSGSRD 36916
17-03-17 20:11:02.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.428 -07 000000627 INF: FPGA: Recv ZSGSRD 36919
17-03-17 20:11:02.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.438 -07 000000569 INF: FPGA: Recv ZSGSRD 36921
17-03-17 20:11:02.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36920
17-03-17 20:11:02.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.458 -07 000000576 INF: FPGA: Recv ZSGSRD 36909
17-03-17 20:11:02.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.468 -07 000000627 INF: FPGA: Recv ZSGSRD 36907
17-03-17 20:11:02.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:02.478 -07 000000502 INF: FPGA: Recv ZSGSRD 36910
17-03-17 20:11:02.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.488 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:02.488 -07 000000627 INF: FPGA: Recv ZPIEZORD 33270
17-03-17 20:11:02.498 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.1 V.
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36914 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36913 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36907 (-176.5 uncal um), Max = 36921 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36914, posNoise = 7, negNoise = 7
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: After move to -0.177459, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:11:02.498 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:02.548 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:11:02.548 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:02.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:02.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:02.548 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:02.548 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:02.548 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:02.548 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:02.548 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:11:02.548 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:02.558 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:02.558 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:02.558 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:11:02.558 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:11:02.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:02.608 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:02.808 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:02.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:02.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:02.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-17 20:11:02.848 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:02.848 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:02.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:11:02.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:11:02.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:02.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:02.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:11:02.948 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:02.948 -07 000000569 INF: Autofocus start
17-03-17 20:11:02.948 -07 000000569 INF: MeasureProfile start
17-03-17 20:11:02.948 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:02.958 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:11:02.958 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:02.958 -07 000000569 INF: MeasureProfile done
17-03-17 20:11:02.958 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:11:02.958 -07 000000569 INF: Autofocus finished
17-03-17 20:11:03.158 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:03.158 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:03.158 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177466719012099. ----------
17-03-17 20:11:03.158 -07 000000610 INF: Cycle	35	Tile	5	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:03.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37299, sync = True, waitForSettling = True)
17-03-17 20:11:03.168 -07 000000610 INF: Z Motor: Moving to -0.170744 mm, started at -0.177467 mm, distance = 6.72 um
17-03-17 20:11:03.168 -07 000000610 INF: FPGA: Xmit ZDACW 37299\n [Z Motor]
17-03-17 20:11:03.168 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:11:03.178 -07 000000610 INF: FPGA: 'ZDACW 37299' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:03.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:03.178 -07 000000569 INF: FPGA: Recv ZDACR 37299
17-03-17 20:11:03.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:03.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35871
17-03-17 20:11:03.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:03.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:11:03.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35869
17-03-17 20:11:03.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.368 -07 000000627 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:11:03.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35866
17-03-17 20:11:03.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35860
17-03-17 20:11:03.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.398 -07 000000627 INF: FPGA: Recv ZSGSRD 35869
17-03-17 20:11:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35870
17-03-17 20:11:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.418 -07 000000569 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:11:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:03.428 -07 000000627 INF: FPGA: Recv ZSGSRD 35870
17-03-17 20:11:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:03.438 -07 000000569 INF: FPGA: Recv ZPIEZORD 31878
17-03-17 20:11:03.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:03.448 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 20:11:03.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35869 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35860 (-169.8 uncal um), Max = 35872 (-169.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:11:03.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35869, posNoise = 3, negNoise = 9
17-03-17 20:11:03.448 -07 000000610 INF: Z Motor: After move to -0.170744, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:03.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:11:03.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:03.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:03.448 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:03.448 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:03.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:03.448 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:03.448 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:03.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:03.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:03.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:03.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:03.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:03.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:03.458 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:03.458 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:03.458 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:03.468 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:11:03.468 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:03.468 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:11:03.468 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:03.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37476 150\n [Camera]
17-03-17 20:11:03.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:04.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:04.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:04.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:04.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:04.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2505849160, 0x0, 391868352) start.
17-03-17 20:11:04.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:04.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:04.078 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:04.078 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:04.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:11:04.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37476 796
17-03-17 20:11:04.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:04.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2505849160, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:11:04.458 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:11:04.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:04.458 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:11:04.458 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:11:04.458 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:04.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:11:04.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:04.468 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:04.478 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:11:04.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:04.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:04.618 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:04.618 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:04.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:11:04.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:04.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:04.618 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:04.618 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:04.618 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 20:11:04.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:04.808 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:04.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37476 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall
17-03-17 20:11:04.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:04.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170753417323959. ------
17-03-17 20:11:04.818 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:04.818 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17719 mm
17-03-17 20:11:04.818 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:04.818 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:11:04.818 -07 000000429 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:11:04.818 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:04.818 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38708, sync = True, waitForSettling = False)
17-03-17 20:11:04.818 -07 000000462 INF: Z Motor: Moving to -0.177194 mm, started at -0.170753 mm, distance = -6.44 um
17-03-17 20:11:04.828 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:04.828 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:04.828 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:11:04.838 -07 000000462 INF: FPGA: Xmit ZDACW 38708\n [Z Motor]
17-03-17 20:11:04.838 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:11:04.838 -07 000000429 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:04.838 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:11:04.838 -07 000000429 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:04.838 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:11:04.848 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:04.848 -07 000000462 INF: FPGA: 'ZDACW 38708' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:11:04.858 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:04.868 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:04.868 -07 000000382 INF: FPGA: Recv ZDACR 38708
17-03-17 20:11:04.878 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:04.878 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:11:05.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:11:05.018 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:11:05.018 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:05.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:11:05.028 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:11:05.028 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:05.028 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:05.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:05.028 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:11:05.038 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:11:05.048 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:05.048 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:05.228 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:11:05.228 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:11:05.268 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:05.268 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:11:05.278 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:11:05.278 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:05.278 -07 000000429 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:11:05.278 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 20:11:06.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:06.228 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:11:06.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:06.238 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:06.248 -07 000000429 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:06.248 -07 000000429 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:06.248 -07 000000429 INF: Y Motor: Moved to 64.0571 after 1433 ms (table move)
17-03-17 20:11:06.258 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177194 mm (DAC = 38708)
17-03-17 20:11:06.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.258 -07 000000429 INF: FPGA: Recv ZSGSRD 36874
17-03-17 20:11:06.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:06.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.268 -07 000000429 INF: FPGA: Recv ZSGSRD 36866
17-03-17 20:11:06.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36876
17-03-17 20:11:06.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36877
17-03-17 20:11:06.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36870
17-03-17 20:11:06.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.308 -07 000000429 INF: FPGA: Recv ZSGSRD 36873
17-03-17 20:11:06.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36866
17-03-17 20:11:06.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.328 -07 000000438 INF: FPGA: Recv ZSGSRD 36871
17-03-17 20:11:06.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36864
17-03-17 20:11:06.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:06.348 -07 000000382 INF: FPGA: Recv ZSGSRD 36871
17-03-17 20:11:06.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.358 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:06.358 -07 000000486 INF: FPGA: Recv ZPIEZORD 33188
17-03-17 20:11:06.368 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.2 V.
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36871 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36871 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36864 (-176.3 uncal um), Max = 36877 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36871, posNoise = 6, negNoise = 7
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: After move to -0.177194, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:11:06.368 -07 000000623 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:06.418 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:11:06.418 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:06.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:06.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:06.418 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:06.418 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:06.418 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:06.418 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:06.418 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:06.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:06.428 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:06.428 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:06.428 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:11:06.428 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:11:06.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:06.478 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:06.678 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:06.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:06.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:06.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 20:11:06.718 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:06.718 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:06.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:11:06.758 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:06.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:11:06.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:06.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:06.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:11:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:06.918 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:06.918 -07 000000502 INF: Autofocus start
17-03-17 20:11:06.918 -07 000000502 INF: MeasureProfile start
17-03-17 20:11:06.918 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:06.928 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:06.928 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:06.928 -07 000000502 INF: MeasureProfile done
17-03-17 20:11:06.928 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:11:06.928 -07 000000502 INF: Autofocus finished
17-03-17 20:11:07.128 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:07.128 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:07.138 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177190477890003. ----------
17-03-17 20:11:07.138 -07 000000610 INF: Cycle	35	Tile	6	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:07.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = True)
17-03-17 20:11:07.138 -07 000000610 INF: Z Motor: Moving to -0.170396 mm, started at -0.177190 mm, distance = 6.79 um
17-03-17 20:11:07.138 -07 000000610 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-17 20:11:07.138 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:11:07.148 -07 000000610 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:07.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:07.148 -07 000000429 INF: FPGA: Recv ZDACR 37223
17-03-17 20:11:07.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.308 -07 000000623 INF: FPGA: Recv ZSGSRD 35816
17-03-17 20:11:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35817
17-03-17 20:11:07.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.348 -07 000000438 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:11:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35815
17-03-17 20:11:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.378 -07 000000382 INF: FPGA: Recv ZSGSRD 35814
17-03-17 20:11:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:11:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.398 -07 000000502 INF: FPGA: Recv ZSGSRD 35817
17-03-17 20:11:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.408 -07 000000476 INF: FPGA: Recv ZSGSRD 35818
17-03-17 20:11:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.418 -07 000000502 INF: FPGA: Recv ZSGSRD 35816
17-03-17 20:11:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:07.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35812
17-03-17 20:11:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:07.438 -07 000000476 INF: FPGA: Recv ZPIEZORD 31809
17-03-17 20:11:07.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:07.448 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -8.8 V.
17-03-17 20:11:07.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35811 (-169.5 uncal um), Max = 35818 (-169.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:11:07.448 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 3, negNoise = 4
17-03-17 20:11:07.448 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:07.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-17 20:11:07.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:07.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:07.448 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:07.448 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:07.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:07.448 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:07.448 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:07.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:07.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:07.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:07.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:07.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:07.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:07.458 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:07.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:07.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:07.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:11:07.468 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:07.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:11:07.468 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:07.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37400 150\n [Camera]
17-03-17 20:11:07.608 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.028963,
17-03-17 20:11:07.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:08.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:08.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:08.078 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:08.078 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:08.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:11:08.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:08.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:08.078 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:08.078 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:08.078 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:11:08.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37400 796
17-03-17 20:11:08.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:08.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:11:08.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:11:08.458 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:08.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:11:08.458 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:11:08.458 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:08.458 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:08.468 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:08.468 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:11:08.468 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:11:08.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:08.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:08.618 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:08.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:08.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:08.758 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:08.758 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:08.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:11:08.758 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:08.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:11:08.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:08.808 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:08.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37400 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall
17-03-17 20:11:08.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:08.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170406509868304. ------
17-03-17 20:11:08.818 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:08.818 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17693 mm
17-03-17 20:11:08.818 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:08.818 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:11:08.818 -07 000000623 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:11:08.818 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:08.818 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38650, sync = True, waitForSettling = False)
17-03-17 20:11:08.818 -07 000000429 INF: Z Motor: Moving to -0.176928 mm, started at -0.170407 mm, distance = -6.52 um
17-03-17 20:11:08.828 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:08.828 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:08.828 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:11:08.838 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:11:08.838 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:08.838 -07 000000623 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:08.838 -07 000000623 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:11:08.838 -07 000000429 INF: FPGA: Xmit ZDACW 38650\n [Z Motor]
17-03-17 20:11:08.838 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:11:08.848 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:08.848 -07 000000429 INF: FPGA: 'ZDACW 38650' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:11:08.858 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:08.868 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:08.868 -07 000000502 INF: FPGA: Recv ZDACR 38650
17-03-17 20:11:08.878 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:08.878 -07 000000429 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:11:09.048 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:09.048 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:09.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:11:09.158 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:11:09.158 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:09.158 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:11:09.158 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:11:09.158 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:09.158 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:09.158 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:09.158 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 20:11:09.168 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:11:09.228 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:11:09.228 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:11:09.268 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:09.268 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:11:09.278 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:09.278 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:09.278 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:11:09.278 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:11:10.228 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:10.228 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:11:10.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:10.238 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:10.258 -07 000000623 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:10.258 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:10.258 -07 000000623 INF: Y Motor: Moved to 64.8789 after 1436 ms (table move)
17-03-17 20:11:10.258 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176928 mm (DAC = 38650)
17-03-17 20:11:10.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36839
17-03-17 20:11:10.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:10.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:11:10.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36832
17-03-17 20:11:10.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36830
17-03-17 20:11:10.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:11:10.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.308 -07 000000438 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:11:10.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:11:10.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.328 -07 000000438 INF: FPGA: Recv ZSGSRD 36832
17-03-17 20:11:10.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.338 -07 000000627 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:11:10.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:10.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:11:10.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.358 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:10.358 -07 000000431 INF: FPGA: Recv ZPIEZORD 33140
17-03-17 20:11:10.368 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.2 V.
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36832 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36832 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36827 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36832, posNoise = 7, negNoise = 5
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: After move to -0.176928, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:11:10.368 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:10.418 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:11:10.418 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:10.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:10.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:10.418 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:10.418 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:10.418 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:10.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:10.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:10.418 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:10.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:10.428 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:10.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:11:10.438 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:11:10.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:10.488 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:10.688 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:10.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:10.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:10.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 20:11:10.728 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:10.728 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:10.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:11:10.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:11:10.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:10.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:11:10.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:11:10.828 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:10.828 -07 000000431 INF: Autofocus start
17-03-17 20:11:10.828 -07 000000431 INF: MeasureProfile start
17-03-17 20:11:10.828 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:10.838 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:11:10.838 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:10.848 -07 000000431 INF: MeasureProfile done
17-03-17 20:11:10.848 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:11:10.848 -07 000000431 INF: Autofocus finished
17-03-17 20:11:11.038 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:11.038 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:11.038 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176939933616475. ----------
17-03-17 20:11:11.048 -07 000000610 INF: Cycle	35	Tile	7	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:11.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37147, sync = True, waitForSettling = True)
17-03-17 20:11:11.048 -07 000000610 INF: Z Motor: Moving to -0.170048 mm, started at -0.176940 mm, distance = 6.89 um
17-03-17 20:11:11.048 -07 000000610 INF: FPGA: Xmit ZDACW 37147\n [Z Motor]
17-03-17 20:11:11.048 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:11:11.058 -07 000000610 INF: FPGA: 'ZDACW 37147' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:11.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:11.058 -07 000000576 INF: FPGA: Recv ZDACR 37147
17-03-17 20:11:11.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:11.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.218 -07 000000627 INF: FPGA: Recv ZSGSRD 35760
17-03-17 20:11:11.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:11:11.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:11:11.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.248 -07 000000627 INF: FPGA: Recv ZSGSRD 35765
17-03-17 20:11:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35768
17-03-17 20:11:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.268 -07 000000623 INF: FPGA: Recv ZSGSRD 35763
17-03-17 20:11:11.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.278 -07 000000569 INF: FPGA: Recv ZSGSRD 35758
17-03-17 20:11:11.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:11:11.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.298 -07 000000569 INF: FPGA: Recv ZSGSRD 35760
17-03-17 20:11:11.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:11.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:11:11.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:11.318 -07 000000438 INF: FPGA: Recv ZPIEZORD 31733
17-03-17 20:11:11.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:11.328 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.9 V.
17-03-17 20:11:11.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35763 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35762 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35758 (-169.2 uncal um), Max = 35768 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:11:11.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35763, posNoise = 5, negNoise = 5
17-03-17 20:11:11.328 -07 000000610 INF: Z Motor: After move to -0.170048, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:11.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:11:11.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:11.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:11.328 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:11.328 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:11.328 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:11.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:11.328 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:11.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:11.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:11.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:11.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:11.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:11.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:11.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:11.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:11.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:11.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:11.348 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:11:11.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:11:11.348 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:11:11.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37324 150\n [Camera]
17-03-17 20:11:11.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:11.758 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:11.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:11.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:11.958 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:11.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:11.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:11.958 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:11.968 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:11.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:11:11.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:11.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:11:12.148 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37324 796
17-03-17 20:11:12.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:11:12.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:11:12.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:11:12.458 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:12.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 486 ms.
17-03-17 20:11:12.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 486 ms.
17-03-17 20:11:12.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:12.458 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:11:12.458 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 20:11:12.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:11:12.468 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 20:11:12.498 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:12.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:12.498 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:12.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:12.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:12.508 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:12.508 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:12.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424724128, 0x0, 418435064) start.
17-03-17 20:11:12.508 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:12.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:11:12.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:12.688 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:12.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37324 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:11:12.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:12.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170072450836932. ------
17-03-17 20:11:12.698 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:12.698 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17648 mm
17-03-17 20:11:12.698 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:12.698 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:12.698 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38552, sync = True, waitForSettling = False)
17-03-17 20:11:12.698 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:11:12.698 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:11:12.698 -07 000000569 INF: Z Motor: Moving to -0.176480 mm, started at -0.170072 mm, distance = -6.41 um
17-03-17 20:11:12.708 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:12.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:12.708 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:11:12.718 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:12.718 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:12.718 -07 000000569 INF: FPGA: Xmit ZDACW 38552\n [Z Motor]
17-03-17 20:11:12.718 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:11:12.718 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:12.718 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:11:12.728 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:12.728 -07 000000569 INF: FPGA: 'ZDACW 38552' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:11:12.738 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:12.748 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:12.748 -07 000000424 INF: FPGA: Recv ZDACR 38552
17-03-17 20:11:12.758 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:12.758 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:11:12.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:11:12.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:11:12.898 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:12.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424724128, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:11:12.898 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:11:12.898 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:12.908 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:12.908 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:11:12.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:12.908 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:11:12.928 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:12.928 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:13.088 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.028963,
17-03-17 20:11:13.108 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:11:13.108 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:11:13.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:13.148 -07 000000475 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:11:13.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:13.158 -07 000000438 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:13.158 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:11:13.158 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 20:11:14.108 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:14.108 -07 000000608 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:11:14.118 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:14.118 -07 000000438 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:14.138 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:14.138 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:14.138 -07 000000438 INF: Y Motor: Moved to 65.7139 after 1435 ms (table move)
17-03-17 20:11:14.138 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176480 mm (DAC = 38552)
17-03-17 20:11:14.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.148 -07 000000608 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:11:14.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:11:14.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36761
17-03-17 20:11:14.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:14.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.158 -07 000000429 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:11:14.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36762
17-03-17 20:11:14.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36767
17-03-17 20:11:14.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.188 -07 000000424 INF: FPGA: Recv ZSGSRD 36764
17-03-17 20:11:14.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36762
17-03-17 20:11:14.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.208 -07 000000424 INF: FPGA: Recv ZSGSRD 36758
17-03-17 20:11:14.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.218 -07 000000429 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:11:14.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:14.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:11:14.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.238 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:14.238 -07 000000429 INF: FPGA: Recv ZPIEZORD 33047
17-03-17 20:11:14.248 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.2 V.
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36760 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36760 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36753 (-175.5 uncal um), Max = 36767 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36760, posNoise = 7, negNoise = 7
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: After move to -0.176480, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: Settle wait time = 1440 ms, measure time = 101 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:11:14.248 -07 000000627 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:14.298 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:11:14.298 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:14.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:14.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:14.298 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:14.298 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:14.298 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:14.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:14.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:14.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:14.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:14.308 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:14.318 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:11:14.318 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:11:14.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:14.358 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:14.558 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:14.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:14.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:14.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 20:11:14.598 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:14.598 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:14.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:11:14.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:11:14.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:14.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:14.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:11:14.798 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:14.798 -07 000000569 INF: Autofocus start
17-03-17 20:11:14.798 -07 000000569 INF: MeasureProfile start
17-03-17 20:11:14.798 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:14.808 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:11:14.808 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:14.808 -07 000000569 INF: MeasureProfile done
17-03-17 20:11:14.808 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:11:14.808 -07 000000569 INF: Autofocus finished
17-03-17 20:11:15.008 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:15.008 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:15.018 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176477390342268. ----------
17-03-17 20:11:15.018 -07 000000610 INF: Cycle	35	Tile	8	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:15.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37067, sync = True, waitForSettling = True)
17-03-17 20:11:15.018 -07 000000610 INF: Z Motor: Moving to -0.169682 mm, started at -0.176477 mm, distance = 6.80 um
17-03-17 20:11:15.018 -07 000000610 INF: FPGA: Xmit ZDACW 37067\n [Z Motor]
17-03-17 20:11:15.018 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:11:15.028 -07 000000610 INF: FPGA: 'ZDACW 37067' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:15.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:15.028 -07 000000424 INF: FPGA: Recv ZDACR 37067
17-03-17 20:11:15.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35699
17-03-17 20:11:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.198 -07 000000438 INF: FPGA: Recv ZSGSRD 35703
17-03-17 20:11:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35705
17-03-17 20:11:15.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:11:15.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35711
17-03-17 20:11:15.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35706
17-03-17 20:11:15.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.248 -07 000000627 INF: FPGA: Recv ZSGSRD 35713
17-03-17 20:11:15.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35703
17-03-17 20:11:15.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.268 -07 000000627 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:11:15.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:15.278 -07 000000438 INF: FPGA: Recv ZSGSRD 35707
17-03-17 20:11:15.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:15.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:15.288 -07 000000569 INF: FPGA: Recv ZPIEZORD 31624
17-03-17 20:11:15.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:15.298 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.0 V.
17-03-17 20:11:15.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35704 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35704 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35697 (-168.8 uncal um), Max = 35713 (-168.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:15.298 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35704, posNoise = 9, negNoise = 7
17-03-17 20:11:15.298 -07 000000610 INF: Z Motor: After move to -0.169682, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:15.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:11:15.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:15.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:15.298 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:15.298 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:15.298 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:15.298 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:15.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:15.298 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:15.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:15.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:15.298 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:15.298 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:15.308 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:15.308 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:15.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:15.308 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:15.318 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:11:15.318 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:11:15.318 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:11:15.318 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:11:15.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37244 150\n [Camera]
17-03-17 20:11:15.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:15.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:15.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:15.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:15.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:15.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) start.
17-03-17 20:11:15.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:15.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:15.938 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:15.938 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:15.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:11:16.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37244 796
17-03-17 20:11:16.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:16.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:11:16.308 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:11:16.308 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:16.318 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:16.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:11:16.318 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:11:16.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:16.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:16.318 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:16.328 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:11:16.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:16.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:16.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:16.478 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:16.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:11:16.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:16.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:16.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:16.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:16.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:11:16.668 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:16.668 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:16.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37244 150' command took 2 ms to send, 1332 ms to get response, and 1343 ms overall
17-03-17 20:11:16.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:16.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169693422320568. ------
17-03-17 20:11:16.668 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17616 mm
17-03-17 20:11:16.668 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:16.668 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:16.668 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:11:16.668 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 20:11:16.678 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:16.678 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:16.678 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:11:16.678 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38483, sync = True, waitForSettling = False)
17-03-17 20:11:16.678 -07 000000475 INF: Z Motor: Moving to -0.176164 mm, started at -0.169693 mm, distance = -6.47 um
17-03-17 20:11:16.678 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:11:16.688 -07 000000502 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:16.688 -07 000000502 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:16.688 -07 000000475 INF: FPGA: Xmit ZDACW 38483\n [Z Motor]
17-03-17 20:11:16.688 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:11:16.688 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:16.688 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:11:16.698 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:16.698 -07 000000475 INF: FPGA: 'ZDACW 38483' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:11:16.708 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:16.718 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:16.718 -07 000000623 INF: FPGA: Recv ZDACR 38483
17-03-17 20:11:16.728 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:16.728 -07 000000475 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:11:16.758 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:16.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:11:16.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:11:16.858 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:16.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:11:16.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:11:16.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:16.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:16.858 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:16.858 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:16.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:11:16.898 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:16.898 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:11:17.078 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:11:17.078 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:11:17.118 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:17.118 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:11:17.128 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:17.128 -07 000000502 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:17.128 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:11:17.128 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-17 20:11:18.078 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:18.078 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:11:18.088 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:18.088 -07 000000502 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:18.108 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:18.108 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:18.108 -07 000000502 INF: Y Motor: Moved to 66.5391 after 1433 ms (table move)
17-03-17 20:11:18.108 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176164 mm (DAC = 38483)
17-03-17 20:11:18.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.108 -07 000000438 INF: FPGA: Recv ZSGSRD 36717
17-03-17 20:11:18.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:11:18.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.118 -07 000000429 INF: FPGA: Recv ZSGSRD 36716
17-03-17 20:11:18.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.138 -07 000000475 INF: FPGA: Recv ZSGSRD 36715
17-03-17 20:11:18.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:18.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.168 -07 000000608 INF: FPGA: Recv ZSGSRD 36709
17-03-17 20:11:18.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:18.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36708
17-03-17 20:11:18.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:18.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36716
17-03-17 20:11:18.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:18.228 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.228 -07 000000608 INF: FPGA: Recv ZSGSRD 36711
17-03-17 20:11:18.238 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36713
17-03-17 20:11:18.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.248 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.248 -07 000000382 INF: FPGA: Recv ZSGSRD 36709
17-03-17 20:11:18.258 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.258 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:18.258 -07 000000438 INF: FPGA: Recv ZSGSRD 36704
17-03-17 20:11:18.268 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.268 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:18.268 -07 000000476 INF: FPGA: Recv ZPIEZORD 33019
17-03-17 20:11:18.278 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.2 V.
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36712 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36704 (-175.2 uncal um), Max = 36717 (-175.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36712, posNoise = 5, negNoise = 8
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: After move to -0.176164, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: Settle wait time = 1432 ms, measure time = 164 ms (allowed 150 ms), total time = 1596 ms
17-03-17 20:11:18.278 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 164 ms, longer than max expected time of 150 ms
17-03-17 20:11:18.278 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 20:11:18.278 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:18.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:18.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:18.278 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:18.278 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:18.278 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:18.278 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:18.278 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:11:18.278 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:18.288 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:18.288 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:18.298 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:11:18.298 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:11:18.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:18.348 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:18.468 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.003063,
17-03-17 20:11:18.548 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:18.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:18.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:18.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-17 20:11:18.588 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:18.588 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:18.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:11:18.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:11:18.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:18.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:18.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:11:18.688 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:18.688 -07 000000486 INF: Autofocus start
17-03-17 20:11:18.688 -07 000000486 INF: MeasureProfile start
17-03-17 20:11:18.698 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:18.698 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 20:11:18.698 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:18.698 -07 000000486 INF: MeasureProfile done
17-03-17 20:11:18.698 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:11:18.698 -07 000000486 INF: Autofocus finished
17-03-17 20:11:18.898 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:18.898 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 206 ms overall
17-03-17 20:11:18.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176169028159463. ----------
17-03-17 20:11:18.908 -07 000000610 INF: Cycle	35	Tile	9	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:18.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36998, sync = True, waitForSettling = True)
17-03-17 20:11:18.918 -07 000000610 INF: Z Motor: Moving to -0.169366 mm, started at -0.176169 mm, distance = 6.80 um
17-03-17 20:11:18.918 -07 000000610 INF: FPGA: Xmit ZDACW 36998\n [Z Motor]
17-03-17 20:11:18.918 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:11:18.928 -07 000000610 INF: FPGA: 'ZDACW 36998' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:18.928 -07 000000462 INF: FPGA: Recv ZDACR 36998
17-03-17 20:11:18.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:18.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.088 -07 000000382 INF: FPGA: Recv ZSGSRD 35658
17-03-17 20:11:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35652
17-03-17 20:11:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.108 -07 000000502 INF: FPGA: Recv ZSGSRD 35656
17-03-17 20:11:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.118 -07 000000476 INF: FPGA: Recv ZSGSRD 35652
17-03-17 20:11:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:11:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:11:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.148 -07 000000502 INF: FPGA: Recv ZSGSRD 35651
17-03-17 20:11:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35658
17-03-17 20:11:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:11:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:19.178 -07 000000438 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:11:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:19.188 -07 000000486 INF: FPGA: Recv ZPIEZORD 31617
17-03-17 20:11:19.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:19.198 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.9 V.
17-03-17 20:11:19.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35651 (-168.5 uncal um), Max = 35658 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:11:19.198 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 4, negNoise = 3
17-03-17 20:11:19.198 -07 000000610 INF: Z Motor: After move to -0.169366, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:19.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:11:19.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:19.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:19.198 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:19.198 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:19.198 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:19.198 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:19.198 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:19.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:19.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:11:19.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:19.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:19.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:19.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:19.208 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:19.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:19.208 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:19.218 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:11:19.218 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:11:19.218 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:11:19.218 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:11:19.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37175 150\n [Camera]
17-03-17 20:11:19.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:19.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:19.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:19.828 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:19.828 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:19.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:11:19.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:19.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:19.838 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:19.838 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:19.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:20.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 796
17-03-17 20:11:20.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:20.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:11:20.208 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:11:20.208 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:20.218 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:20.218 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:11:20.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:20.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:20.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:20.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:20.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:11:20.368 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:20.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:20.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:20.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:20.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:11:20.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:20.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:20.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:20.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:20.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:11:20.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:20.568 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:20.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37175 150' command took 2 ms to send, 1331 ms to get response, and 1343 ms overall
17-03-17 20:11:20.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:20.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.16937221171348. ------
17-03-17 20:11:20.568 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:20.568 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17620 mm
17-03-17 20:11:20.568 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:20.578 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:11:20.578 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:11:20.578 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:20.578 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38491, sync = True, waitForSettling = False)
17-03-17 20:11:20.578 -07 000000475 INF: Z Motor: Moving to -0.176201 mm, started at -0.169372 mm, distance = -6.83 um
17-03-17 20:11:20.588 -07 000000475 INF: FPGA: Xmit ZDACW 38491\n [Z Motor]
17-03-17 20:11:20.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:11:20.758 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:11:20.758 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:20.768 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:11:20.768 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:11:20.768 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:20.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:20.768 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:11:20.768 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:11:20.768 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:11:20.788 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:20.788 -07 000000608 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:11:20.788 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:11:20.788 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 210 ms to get response, and 214 ms overall
17-03-17 20:11:20.788 -07 000000475 INF: FPGA: 'ZDACW 38491' command took 0 ms to send, 191 ms to get response, and 208 ms overall
17-03-17 20:11:20.788 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:20.788 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 209 ms overall
17-03-17 20:11:20.788 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:20.788 -07 000000608 INF: FPGA: Recv ZDACR 38491
17-03-17 20:11:20.788 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:20.788 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:11:20.798 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:20.798 -07 000000475 INF: Z Motor: MoveAbsStepped took 217 ms (did NOT wait for settling yet))
17-03-17 20:11:20.798 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:20.808 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:20.998 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:20.998 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:11:21.178 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:11:21.178 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:11:21.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:21.218 -07 000000476 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:11:21.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:21.228 -07 000000462 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:21.228 -07 000000462 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:11:21.228 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 20:11:21.758 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:22.178 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:22.178 -07 000000608 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:11:22.188 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.188 -07 000000462 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:22.208 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:22.208 -07 000000462 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:22.208 -07 000000462 INF: Y Motor: Moved to 67.3721 after 1631 ms (table move)
17-03-17 20:11:22.208 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176201 mm (DAC = 38491)
17-03-17 20:11:22.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.208 -07 000000475 INF: FPGA: Recv ZSGSRD 36715
17-03-17 20:11:22.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:11:22.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.218 -07 000000608 INF: FPGA: Recv ZSGSRD 36712
17-03-17 20:11:22.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36721
17-03-17 20:11:22.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.238 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.238 -07 000000438 INF: FPGA: Recv ZSGSRD 36721
17-03-17 20:11:22.248 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.248 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36723
17-03-17 20:11:22.258 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.258 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.258 -07 000000608 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:11:22.268 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.268 -07 000000476 INF: FPGA: Recv ZSGSRD 36714
17-03-17 20:11:22.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:11:22.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36709
17-03-17 20:11:22.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:22.298 -07 000000475 INF: FPGA: Recv ZSGSRD 36713
17-03-17 20:11:22.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.308 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:22.308 -07 000000475 INF: FPGA: Recv ZPIEZORD 33071
17-03-17 20:11:22.318 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.1 V.
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36717 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36718 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36709 (-175.3 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36717, posNoise = 6, negNoise = 8
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: After move to -0.176201, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: Settle wait time = 1634 ms, measure time = 105 ms (allowed 150 ms), total time = 1739 ms
17-03-17 20:11:22.318 -07 000000486 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:22.368 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1792 ms
17-03-17 20:11:22.368 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:22.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:22.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:22.368 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:22.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:22.368 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:22.368 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:22.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:22.368 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:22.378 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:22.378 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:22.378 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:11:22.378 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:11:22.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:22.428 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:22.628 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:22.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:22.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:22.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 20:11:22.668 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:22.668 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:22.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:11:22.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:11:22.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:22.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:22.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:11:22.768 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:22.768 -07 000000459 INF: Autofocus start
17-03-17 20:11:22.768 -07 000000459 INF: MeasureProfile start
17-03-17 20:11:22.768 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:22.778 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:22.778 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:22.778 -07 000000459 INF: MeasureProfile done
17-03-17 20:11:22.778 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:11:22.778 -07 000000459 INF: Autofocus finished
17-03-17 20:11:22.978 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:22.978 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:22.978 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176201149220172. ----------
17-03-17 20:11:22.988 -07 000000610 INF: Cycle	35	Tile	10	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:22.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37024, sync = True, waitForSettling = True)
17-03-17 20:11:22.988 -07 000000610 INF: Z Motor: Moving to -0.169485 mm, started at -0.176201 mm, distance = 6.72 um
17-03-17 20:11:22.988 -07 000000610 INF: FPGA: Xmit ZDACW 37024\n [Z Motor]
17-03-17 20:11:22.988 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:11:22.998 -07 000000610 INF: FPGA: 'ZDACW 37024' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:22.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:22.998 -07 000000462 INF: FPGA: Recv ZDACR 37024
17-03-17 20:11:23.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:11:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.168 -07 000000476 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:11:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.178 -07 000000476 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:11:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.188 -07 000000476 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:11:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:11:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.208 -07 000000476 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:11:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35673
17-03-17 20:11:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:11:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:11:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:23.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:11:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:23.268 -07 000000424 INF: FPGA: Recv ZPIEZORD 31653
17-03-17 20:11:23.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:23.278 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.9 V.
17-03-17 20:11:23.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35672 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35674 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35669 (-168.6 uncal um), Max = 35676 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:11:23.278 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35672, posNoise = 4, negNoise = 3
17-03-17 20:11:23.278 -07 000000610 INF: Z Motor: After move to -0.169485, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:23.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 20:11:23.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:23.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:23.278 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:23.278 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:23.278 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:23.278 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:23.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:23.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:23.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:23.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:23.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:23.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:23.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:23.278 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:23.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:11:23.288 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:23.288 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:11:23.288 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:23.298 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:11:23.298 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:11:23.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37200 150\n [Camera]
17-03-17 20:11:23.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:11:23.848 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.990831,
17-03-17 20:11:23.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:23.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:23.908 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:23.908 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:23.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 20:11:23.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:23.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:23.918 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:23.918 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:23.918 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 20:11:24.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37200 796
17-03-17 20:11:24.248 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:24.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:11:24.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:11:24.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:24.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:11:24.308 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:11:24.308 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:24.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:24.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:11:24.308 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:24.318 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:11:24.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:24.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:24.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:24.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:24.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 20:11:24.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:24.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:24.458 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:24.458 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:24.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 20:11:24.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:24.638 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:24.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37200 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:11:24.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:24.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169487847532032. ------
17-03-17 20:11:24.648 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:24.648 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17582 mm
17-03-17 20:11:24.648 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:24.648 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:11:24.648 -07 000000475 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:11:24.648 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38408, sync = True, waitForSettling = False)
17-03-17 20:11:24.648 -07 000000608 INF: Z Motor: Moving to -0.175821 mm, started at -0.169488 mm, distance = -6.33 um
17-03-17 20:11:24.648 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:24.658 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:24.658 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:24.658 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:11:24.668 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:11:24.668 -07 000000475 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:24.668 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:24.668 -07 000000475 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:24.668 -07 000000475 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:11:24.678 -07 000000608 INF: FPGA: Xmit ZDACW 38408\n [Z Motor]
17-03-17 20:11:24.678 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:11:24.688 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:24.688 -07 000000608 INF: FPGA: 'ZDACW 38408' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:11:24.698 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:24.698 -07 000000623 INF: FPGA: Recv ZDACR 38408
17-03-17 20:11:24.708 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:24.708 -07 000000608 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:11:24.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:11:24.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:11:24.848 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:24.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:11:24.858 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:11:24.858 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:24.858 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:24.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:24.858 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:11:24.868 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:11:24.868 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:24.868 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:11:25.058 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:11:25.058 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:11:25.098 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:25.098 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:11:25.108 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:25.108 -07 000000475 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:25.108 -07 000000475 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:11:25.108 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:11:26.058 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:26.058 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:11:26.068 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:26.068 -07 000000475 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:26.078 -07 000000475 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:26.088 -07 000000475 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:26.088 -07 000000475 INF: Y Motor: Moved to 68.2056 after 1433 ms (table move)
17-03-17 20:11:26.088 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175821 mm (DAC = 38408)
17-03-17 20:11:26.088 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.088 -07 000000438 INF: FPGA: Recv ZSGSRD 36664
17-03-17 20:11:26.098 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:26.098 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.098 -07 000000623 INF: FPGA: Recv ZSGSRD 36651
17-03-17 20:11:26.108 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36661
17-03-17 20:11:26.118 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.118 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.118 -07 000000623 INF: FPGA: Recv ZSGSRD 36659
17-03-17 20:11:26.128 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.128 -07 000000429 INF: FPGA: Recv ZSGSRD 36660
17-03-17 20:11:26.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.138 -07 000000623 INF: FPGA: Recv ZSGSRD 36653
17-03-17 20:11:26.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.148 -07 000000462 INF: FPGA: Recv ZSGSRD 36657
17-03-17 20:11:26.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36658
17-03-17 20:11:26.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.168 -07 000000623 INF: FPGA: Recv ZSGSRD 36662
17-03-17 20:11:26.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:26.178 -07 000000462 INF: FPGA: Recv ZSGSRD 36657
17-03-17 20:11:26.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.188 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:26.188 -07 000000429 INF: FPGA: Recv ZPIEZORD 32975
17-03-17 20:11:26.198 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.2 V.
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36658 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36658 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36651 (-174.9 uncal um), Max = 36664 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36658, posNoise = 6, negNoise = 7
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: After move to -0.175821, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:11:26.198 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:26.248 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:11:26.248 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:26.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:26.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:26.248 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:26.248 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:26.248 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:26.248 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:26.248 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:26.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:26.258 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:26.258 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:26.268 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:11:26.268 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:11:26.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:26.318 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:26.518 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:26.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:26.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:26.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:11:26.558 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:26.558 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:26.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:11:26.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:11:26.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:26.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:26.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:11:26.658 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:26.658 -07 000000462 INF: Autofocus start
17-03-17 20:11:26.658 -07 000000462 INF: MeasureProfile start
17-03-17 20:11:26.658 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:26.668 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:26.668 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:26.678 -07 000000462 INF: MeasureProfile done
17-03-17 20:11:26.678 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:11:26.678 -07 000000462 INF: Autofocus finished
17-03-17 20:11:26.758 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:26.868 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:26.868 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:26.878 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175822120703808. ----------
17-03-17 20:11:26.878 -07 000000610 INF: Cycle	35	Tile	11	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:26.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36941, sync = True, waitForSettling = True)
17-03-17 20:11:26.878 -07 000000610 INF: Z Motor: Moving to -0.169105 mm, started at -0.175822 mm, distance = 6.72 um
17-03-17 20:11:26.878 -07 000000610 INF: FPGA: Xmit ZDACW 36941\n [Z Motor]
17-03-17 20:11:26.878 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:11:26.888 -07 000000610 INF: FPGA: 'ZDACW 36941' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:26.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:26.888 -07 000000608 INF: FPGA: Recv ZDACR 36941
17-03-17 20:11:26.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:26.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.048 -07 000000608 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:11:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.058 -07 000000608 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:11:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.068 -07 000000623 INF: FPGA: Recv ZSGSRD 35614
17-03-17 20:11:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.078 -07 000000608 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:11:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.088 -07 000000608 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:11:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.098 -07 000000623 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:11:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35606
17-03-17 20:11:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.118 -07 000000608 INF: FPGA: Recv ZSGSRD 35618
17-03-17 20:11:27.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.128 -07 000000608 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:11:27.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:27.138 -07 000000608 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:11:27.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:27.148 -07 000000429 INF: FPGA: Recv ZPIEZORD 31579
17-03-17 20:11:27.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:27.158 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.9 V.
17-03-17 20:11:27.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35613 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35614 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35618 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:27.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35613, posNoise = 5, negNoise = 7
17-03-17 20:11:27.158 -07 000000610 INF: Z Motor: After move to -0.169105, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:27.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:11:27.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:27.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:27.158 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:27.158 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:27.158 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:27.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:27.158 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:27.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:27.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:27.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:27.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:11:27.158 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:27.168 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:27.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:27.168 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:27.168 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:27.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:27.168 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:11:27.178 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:11:27.178 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:27.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37118 150\n [Camera]
17-03-17 20:11:27.378 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:27.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:27.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:27.788 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:27.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:27.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:27.788 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:27.788 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 20:11:27.788 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:27.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:27.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 20:11:27.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37118 796
17-03-17 20:11:28.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:28.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:28.168 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:28.168 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:28.168 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:11:28.168 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:11:28.168 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:28.178 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:28.178 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:28.178 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:11:28.188 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:11:28.328 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:28.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:28.328 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:28.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:28.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:28.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:28.478 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:28.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 20:11:28.488 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:28.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:28.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:28.518 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:28.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37118 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall
17-03-17 20:11:28.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:28.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.169108819015668. ------
17-03-17 20:11:28.528 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:28.528 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17564 mm
17-03-17 20:11:28.528 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:28.528 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:11:28.528 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:11:28.528 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38369, sync = True, waitForSettling = False)
17-03-17 20:11:28.528 -07 000000608 INF: Z Motor: Moving to -0.175642 mm, started at -0.169109 mm, distance = -6.53 um
17-03-17 20:11:28.528 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:28.538 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:28.538 -07 000000608 INF: FPGA: Xmit ZDACW 38369\n [Z Motor]
17-03-17 20:11:28.538 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:11:28.548 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:28.548 -07 000000608 INF: FPGA: 'ZDACW 38369' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:11:28.548 -07 000000458 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:11:28.558 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:28.558 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:11:28.558 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:28.558 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:28.558 -07 000000576 INF: Y Motor: Moving 1339 steps-14
17-03-17 20:11:28.568 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:28.568 -07 000000476 INF: FPGA: Recv ZDACR 38369
17-03-17 20:11:28.578 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:28.578 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:28.578 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:11:28.758 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:28.758 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:28.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:11:28.868 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:28.868 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:28.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:11:28.868 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:11:28.868 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:28.868 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:28.868 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:28.868 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 20:11:28.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:11:28.948 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:11:28.948 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:11:28.988 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:28.988 -07 000000608 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:11:28.998 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:28.998 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:28.998 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:11:28.998 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.837 mm, average velocity = 2.114 mm/sec
17-03-17 20:11:29.218 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.979922,
17-03-17 20:11:29.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:29.948 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:11:29.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:29.958 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:29.978 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:29.978 -07 000000576 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:29.978 -07 000000576 INF: Y Motor: Moved to 69.0273 after 1446 ms (table move)
17-03-17 20:11:29.978 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175642 mm (DAC = 38369)
17-03-17 20:11:29.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:29.978 -07 000000576 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:11:29.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:29.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:29.988 -07 000000576 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:11:29.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:29.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:29.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:11:30.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.008 -07 000000569 INF: FPGA: Recv ZSGSRD 36639
17-03-17 20:11:30.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36627
17-03-17 20:11:30.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36635
17-03-17 20:11:30.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.038 -07 000000576 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:11:30.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36625
17-03-17 20:11:30.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.058 -07 000000502 INF: FPGA: Recv ZSGSRD 36619
17-03-17 20:11:30.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.068 -07 000000458 INF: FPGA: Recv ZSGSRD 36632
17-03-17 20:11:30.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.078 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:30.078 -07 000000608 INF: FPGA: Recv ZPIEZORD 32951
17-03-17 20:11:30.088 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.2 V.
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36629 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36629 (-174.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36619 (-174.7 uncal um), Max = 36639 (-174.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36629, posNoise = 10, negNoise = 10
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: After move to -0.175642, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:11:30.088 -07 000000623 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:30.138 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:11:30.138 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:30.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:30.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:30.138 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:30.138 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:30.138 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:30.138 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:30.138 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:30.138 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:30.148 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:30.148 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:30.158 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:11:30.158 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:11:30.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:30.208 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:30.408 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:30.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:30.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:30.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:30.448 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:30.448 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:30.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 20:11:30.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:11:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:11:30.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:11:30.548 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:30.548 -07 000000502 INF: Autofocus start
17-03-17 20:11:30.548 -07 000000502 INF: MeasureProfile start
17-03-17 20:11:30.548 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:30.558 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:30.558 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:30.558 -07 000000502 INF: MeasureProfile done
17-03-17 20:11:30.558 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:11:30.558 -07 000000502 INF: Autofocus finished
17-03-17 20:11:30.758 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:30.758 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:30.758 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175635818551697. ----------
17-03-17 20:11:30.758 -07 000000610 INF: Cycle	35	Tile	12	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:30.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36884, sync = True, waitForSettling = True)
17-03-17 20:11:30.768 -07 000000610 INF: Z Motor: Moving to -0.168844 mm, started at -0.175636 mm, distance = 6.79 um
17-03-17 20:11:30.768 -07 000000610 INF: FPGA: Xmit ZDACW 36884\n [Z Motor]
17-03-17 20:11:30.768 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:11:30.778 -07 000000610 INF: FPGA: 'ZDACW 36884' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:30.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:30.778 -07 000000431 INF: FPGA: Recv ZDACR 36884
17-03-17 20:11:30.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.938 -07 000000431 INF: FPGA: Recv ZSGSRD 35573
17-03-17 20:11:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35572
17-03-17 20:11:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35577
17-03-17 20:11:30.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.968 -07 000000458 INF: FPGA: Recv ZSGSRD 35577
17-03-17 20:11:30.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35576
17-03-17 20:11:30.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.988 -07 000000458 INF: FPGA: Recv ZSGSRD 35570
17-03-17 20:11:30.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:30.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:30.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35572
17-03-17 20:11:31.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:31.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:31.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35574
17-03-17 20:11:31.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:31.018 -07 000000438 INF: FPGA: Recv ZSGSRD 35572
17-03-17 20:11:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:31.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:31.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35574
17-03-17 20:11:31.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:31.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:31.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 31524
17-03-17 20:11:31.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:31.048 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -8.9 V.
17-03-17 20:11:31.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35570 (-168.0 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:11:31.048 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 3, negNoise = 4
17-03-17 20:11:31.048 -07 000000610 INF: Z Motor: After move to -0.168844, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:31.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:11:31.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:31.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:31.048 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:31.048 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:31.048 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:31.048 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:31.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:31.048 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:31.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:31.048 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:31.048 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:31.048 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:31.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:31.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:31.058 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:31.058 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:31.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:31.068 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:31.068 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:11:31.068 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:31.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37061 150\n [Camera]
17-03-17 20:11:31.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:31.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:31.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:31.678 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:31.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:31.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:31.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:31.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:31.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 20:11:31.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:31.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2336340296, 0x0, 391868352) start.
17-03-17 20:11:31.758 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:31.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37061 796
17-03-17 20:11:32.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:32.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:11:32.058 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:11:32.058 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:32.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:32.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2336340296, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:11:32.068 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:11:32.068 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:32.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:32.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:32.068 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:11:32.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:32.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:32.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:32.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:32.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:32.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:32.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:32.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:32.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:32.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:32.408 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:32.408 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:32.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37061 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall
17-03-17 20:11:32.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:32.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168858274742139. ------
17-03-17 20:11:32.418 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:32.418 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17522 mm
17-03-17 20:11:32.418 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:32.418 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:11:32.418 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:32.418 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38276, sync = True, waitForSettling = False)
17-03-17 20:11:32.418 -07 000000458 INF: Z Motor: Moving to -0.175216 mm, started at -0.168858 mm, distance = -6.36 um
17-03-17 20:11:32.418 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:11:32.428 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:32.428 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:32.428 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:11:32.438 -07 000000458 INF: FPGA: Xmit ZDACW 38276\n [Z Motor]
17-03-17 20:11:32.438 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:11:32.438 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:32.438 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:32.438 -07 000000431 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:11:32.438 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:11:32.448 -07 000000458 INF: FPGA: 'ZDACW 38276' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:11:32.448 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:32.458 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:32.468 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:32.468 -07 000000429 INF: FPGA: Recv ZDACR 38276
17-03-17 20:11:32.478 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:32.478 -07 000000458 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:11:32.648 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:32.648 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:32.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:11:32.738 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:11:32.738 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:32.738 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:11:32.738 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:11:32.738 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:32.738 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:32.738 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:32.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 20:11:32.748 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:11:32.828 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:11:32.828 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:11:32.868 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:32.868 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:11:32.878 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:32.878 -07 000000431 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:32.878 -07 000000431 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:11:32.878 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 20:11:33.828 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:33.828 -07 000000486 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:11:33.838 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:33.838 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:33.858 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:33.858 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:11:33.858 -07 000000431 INF: Y Motor: Moved to 69.8638 after 1436 ms (table move)
17-03-17 20:11:33.858 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175216 mm (DAC = 38276)
17-03-17 20:11:33.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.858 -07 000000486 INF: FPGA: Recv ZSGSRD 36560
17-03-17 20:11:33.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:33.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.868 -07 000000462 INF: FPGA: Recv ZSGSRD 36567
17-03-17 20:11:33.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:11:33.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.888 -07 000000431 INF: FPGA: Recv ZSGSRD 36573
17-03-17 20:11:33.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36567
17-03-17 20:11:33.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.908 -07 000000623 INF: FPGA: Recv ZSGSRD 36564
17-03-17 20:11:33.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36569
17-03-17 20:11:33.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36559
17-03-17 20:11:33.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.938 -07 000000459 INF: FPGA: Recv ZSGSRD 36562
17-03-17 20:11:33.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:33.958 -07 000000429 INF: FPGA: Recv ZSGSRD 36569
17-03-17 20:11:33.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:33.968 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:33.968 -07 000000627 INF: FPGA: Recv ZPIEZORD 32868
17-03-17 20:11:33.978 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.2 V.
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36566 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36567 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36559 (-174.3 uncal um), Max = 36574 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36566, posNoise = 8, negNoise = 7
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: After move to -0.175216, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: Settle wait time = 1439 ms, measure time = 115 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:11:33.978 -07 000000608 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:34.018 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:11:34.018 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:34.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:34.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:34.018 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:34.018 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:34.018 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:34.018 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:34.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:34.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:34.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:34.028 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:34.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:11:34.038 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:11:34.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:34.088 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:34.288 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:34.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:34.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:34.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:34.328 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:34.328 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:34.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 286 ms overall
17-03-17 20:11:34.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:11:34.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:34.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:34.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:11:34.428 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:34.428 -07 000000431 INF: Autofocus start
17-03-17 20:11:34.428 -07 000000431 INF: MeasureProfile start
17-03-17 20:11:34.428 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:34.438 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:34.438 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:34.438 -07 000000431 INF: MeasureProfile done
17-03-17 20:11:34.438 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:11:34.438 -07 000000431 INF: Autofocus finished
17-03-17 20:11:34.588 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.964938,
17-03-17 20:11:34.638 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:34.638 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:34.638 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.175231093186766. ----------
17-03-17 20:11:34.638 -07 000000610 INF: Cycle	35	Tile	13	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:34.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36773, sync = True, waitForSettling = True)
17-03-17 20:11:34.648 -07 000000610 INF: Z Motor: Moving to -0.168336 mm, started at -0.175231 mm, distance = 6.90 um
17-03-17 20:11:34.648 -07 000000610 INF: FPGA: Xmit ZDACW 36773\n [Z Motor]
17-03-17 20:11:34.648 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:11:34.658 -07 000000610 INF: FPGA: 'ZDACW 36773' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:34.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:34.658 -07 000000431 INF: FPGA: Recv ZDACR 36773
17-03-17 20:11:34.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:34.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35491
17-03-17 20:11:34.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:34.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:11:34.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.838 -07 000000576 INF: FPGA: Recv ZSGSRD 35495
17-03-17 20:11:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35492
17-03-17 20:11:34.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.858 -07 000000459 INF: FPGA: Recv ZSGSRD 35494
17-03-17 20:11:34.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.868 -07 000000431 INF: FPGA: Recv ZSGSRD 35494
17-03-17 20:11:34.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.878 -07 000000623 INF: FPGA: Recv ZSGSRD 35496
17-03-17 20:11:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35495
17-03-17 20:11:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.898 -07 000000431 INF: FPGA: Recv ZSGSRD 35490
17-03-17 20:11:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:34.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35492
17-03-17 20:11:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:34.918 -07 000000623 INF: FPGA: Recv ZPIEZORD 31437
17-03-17 20:11:34.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:34.928 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.0 V.
17-03-17 20:11:34.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35493 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35493 (-167.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35489 (-167.4 uncal um), Max = 35496 (-167.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:11:34.928 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35493, posNoise = 3, negNoise = 4
17-03-17 20:11:34.928 -07 000000610 INF: Z Motor: After move to -0.168336, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:34.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:11:34.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:34.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:34.928 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:34.928 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:34.928 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:34.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:34.928 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:34.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:34.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:34.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:34.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:34.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:34.938 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:34.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:34.938 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:34.938 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:34.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:34.938 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:11:34.948 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:11:34.948 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:11:34.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36950 150\n [Camera]
17-03-17 20:11:35.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:35.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:35.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:35.558 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:35.558 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:35.558 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:35.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:35.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:35.558 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:35.558 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:35.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:35.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36950 796
17-03-17 20:11:35.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:11:35.938 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:11:35.938 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:11:35.938 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:35.938 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:35.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:11:35.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:11:35.938 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:35.948 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:35.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:35.948 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:11:36.098 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:36.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:36.098 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:36.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:36.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:36.218 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:36.218 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:36.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:36.218 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:36.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:36.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:36.288 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:36.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36950 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:11:36.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:36.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168337913558657. ------
17-03-17 20:11:36.298 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:36.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:11:36.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:11:36.598 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:36.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:36.598 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:36.598 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:36.608 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:36.608 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:36.608 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 20:11:36.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:11:36.628 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:36.628 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 322 ms to get response, and 330 ms overall
17-03-17 20:11:36.628 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:36.628 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17471 mm
17-03-17 20:11:36.628 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:36.628 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:11:36.628 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:11:36.638 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:37.238 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38165, sync = True, waitForSettling = False)
17-03-17 20:11:37.238 -07 000000476 INF: Z Motor: Moving to -0.174708 mm, started at -0.168338 mm, distance = -6.37 um
17-03-17 20:11:37.238 -07 000000476 INF: FPGA: Xmit ZDACW 38165\n [Z Motor]
17-03-17 20:11:38.238 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:11:38.238 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:38.238 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:38.238 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:11:38.238 -07 000000476 INF: FPGA: 'ZDACW 38165' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 20:11:38.238 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:38.238 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1590 ms to get response, and 1602 ms overall
17-03-17 20:11:38.238 -07 000000424 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:38.238 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:38.238 -07 000000424 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:11:38.238 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1601 ms to get response, and 1608 ms overall
17-03-17 20:11:38.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:38.238 -07 000000502 INF: FPGA: Recv ZDACR 38165
17-03-17 20:11:38.248 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:38.248 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:38.248 -07 000000476 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 20:11:38.618 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:11:38.618 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:11:38.658 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:38.658 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:11:38.668 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:38.668 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:38.668 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:11:38.668 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-17 20:11:39.618 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:39.618 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:11:39.628 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:39.628 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:39.668 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:39.668 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:11:39.668 -07 000000424 INF: Y Motor: Moved to 70.6890 after 3035 ms (table move)
17-03-17 20:11:39.668 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174708 mm (DAC = 38165)
17-03-17 20:11:39.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.678 -07 000000569 INF: FPGA: Recv ZSGSRD 36486
17-03-17 20:11:39.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:11:39.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.688 -07 000000438 INF: FPGA: Recv ZSGSRD 36487
17-03-17 20:11:39.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.708 -07 000000502 INF: FPGA: Recv ZSGSRD 36480
17-03-17 20:11:39.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:39.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.718 -07 000000476 INF: FPGA: Recv ZSGSRD 36483
17-03-17 20:11:39.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.728 -07 000000476 INF: FPGA: Recv ZSGSRD 36482
17-03-17 20:11:39.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.738 -07 000000476 INF: FPGA: Recv ZSGSRD 36487
17-03-17 20:11:39.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.748 -07 000000476 INF: FPGA: Recv ZSGSRD 36486
17-03-17 20:11:39.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.758 -07 000000476 INF: FPGA: Recv ZSGSRD 36488
17-03-17 20:11:39.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.768 -07 000000476 INF: FPGA: Recv ZSGSRD 36491
17-03-17 20:11:39.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:39.778 -07 000000476 INF: FPGA: Recv ZSGSRD 36490
17-03-17 20:11:39.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.788 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:39.788 -07 000000476 INF: FPGA: Recv ZPIEZORD 32788
17-03-17 20:11:39.798 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.2 V.
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36486 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36486 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36480 (-173.8 uncal um), Max = 36491 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36486, posNoise = 5, negNoise = 6
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: After move to -0.174708, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: Settle wait time = 2435 ms, measure time = 124 ms (allowed 150 ms), total time = 2559 ms
17-03-17 20:11:39.798 -07 000000431 INF: Z Motor: Waiting extra 26 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:39.828 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3196 ms
17-03-17 20:11:39.828 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:39.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:39.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:39.828 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:39.828 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:39.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:39.828 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:39.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:39.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:39.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:39.838 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:39.848 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:11:39.848 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:11:39.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:39.888 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:39.958 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.004458,
17-03-17 20:11:40.088 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:40.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:40.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:40.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:40.128 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:40.128 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:40.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:11:40.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:11:40.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:40.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:11:40.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:11:40.228 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:40.228 -07 000000569 INF: Autofocus start
17-03-17 20:11:40.228 -07 000000569 INF: MeasureProfile start
17-03-17 20:11:40.228 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:40.238 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:40.238 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:40.238 -07 000000569 INF: MeasureProfile done
17-03-17 20:11:40.238 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:11:40.238 -07 000000569 INF: Autofocus finished
17-03-17 20:11:40.438 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:40.438 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:40.438 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174717156215425. ----------
17-03-17 20:11:40.438 -07 000000610 INF: Cycle	35	Tile	14	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:40.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36698, sync = True, waitForSettling = True)
17-03-17 20:11:40.448 -07 000000610 INF: Z Motor: Moving to -0.167993 mm, started at -0.174717 mm, distance = 6.72 um
17-03-17 20:11:40.448 -07 000000610 INF: FPGA: Xmit ZDACW 36698\n [Z Motor]
17-03-17 20:11:40.448 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:11:40.458 -07 000000610 INF: FPGA: 'ZDACW 36698' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:40.458 -07 000000438 INF: FPGA: Recv ZDACR 36698
17-03-17 20:11:40.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.618 -07 000000476 INF: FPGA: Recv ZSGSRD 35437
17-03-17 20:11:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:40.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.628 -07 000000438 INF: FPGA: Recv ZSGSRD 35443
17-03-17 20:11:40.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.638 -07 000000476 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:11:40.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35443
17-03-17 20:11:40.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:40.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35448
17-03-17 20:11:40.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.668 -07 000000502 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:11:40.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.678 -07 000000431 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:11:40.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:11:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35439
17-03-17 20:11:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:40.708 -07 000000458 INF: FPGA: Recv ZSGSRD 35439
17-03-17 20:11:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:40.718 -07 000000431 INF: FPGA: Recv ZPIEZORD 31340
17-03-17 20:11:40.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:40.728 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 20:11:40.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35441 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35441 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35436 (-167.1 uncal um), Max = 35448 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:11:40.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35441, posNoise = 7, negNoise = 5
17-03-17 20:11:40.728 -07 000000610 INF: Z Motor: After move to -0.167993, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:40.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:11:40.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:40.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:40.728 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:40.728 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:40.728 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:40.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:40.728 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:40.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:40.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:40.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:40.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:40.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:40.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:40.728 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:40.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:11:40.738 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:40.748 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:11:40.748 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:11:40.748 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:11:40.748 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:11:40.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36875 150\n [Camera]
17-03-17 20:11:40.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:41.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:41.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:41.368 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:41.368 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:41.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:41.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:41.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:41.368 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:41.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:41.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:41.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36875 796
17-03-17 20:11:41.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:11:41.758 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:41.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:41.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:11:41.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:11:41.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:41.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:11:41.768 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:11:41.768 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:41.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:41.778 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:11:41.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:41.778 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:11:41.908 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:41.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:41.908 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:42.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:42.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:42.028 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:42.028 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:42.028 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:42.028 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:42.028 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:42.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:11:42.098 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:42.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36875 150' command took 2 ms to send, 1338 ms to get response, and 1346 ms overall
17-03-17 20:11:42.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:42.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.168003854527285. ------
17-03-17 20:11:42.108 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:42.108 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17469 mm
17-03-17 20:11:42.108 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:42.108 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:11:42.108 -07 000000429 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:11:42.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:42.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:11:42.408 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:11:42.408 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:42.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:11:42.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:11:42.408 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:42.408 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:42.408 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:42.408 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 20:11:42.418 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:11:42.428 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:42.428 -07 000000576 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:11:42.428 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 302 ms to get response, and 315 ms overall
17-03-17 20:11:42.428 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:42.428 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 312 ms to get response, and 318 ms overall
17-03-17 20:11:42.428 -07 000000429 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:42.428 -07 000000429 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:11:42.428 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:42.428 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38160, sync = True, waitForSettling = False)
17-03-17 20:11:42.428 -07 000000458 INF: Z Motor: Moving to -0.174685 mm, started at -0.168004 mm, distance = -6.68 um
17-03-17 20:11:42.438 -07 000000458 INF: FPGA: Xmit ZDACW 38160\n [Z Motor]
17-03-17 20:11:42.438 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:11:42.448 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:42.448 -07 000000458 INF: FPGA: 'ZDACW 38160' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:11:42.458 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:42.458 -07 000000576 INF: FPGA: Recv ZDACR 38160
17-03-17 20:11:42.468 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:11:42.468 -07 000000458 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 20:11:42.628 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:42.628 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:11:42.818 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:11:42.818 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:11:42.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:42.858 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:11:42.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:42.868 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:42.868 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:11:42.868 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 20:11:43.818 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:43.818 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:11:43.828 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:43.828 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:43.848 -07 000000429 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:43.848 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:43.848 -07 000000429 INF: Y Motor: Moved to 71.5190 after 1736 ms (table move)
17-03-17 20:11:43.848 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174685 mm (DAC = 38160)
17-03-17 20:11:43.848 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36490
17-03-17 20:11:43.858 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:11:43.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.858 -07 000000429 INF: FPGA: Recv ZSGSRD 36479
17-03-17 20:11:43.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:43.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.868 -07 000000382 INF: FPGA: Recv ZSGSRD 36477
17-03-17 20:11:43.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.878 -07 000000458 INF: FPGA: Recv ZSGSRD 36486
17-03-17 20:11:43.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36487
17-03-17 20:11:43.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36488
17-03-17 20:11:43.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.908 -07 000000458 INF: FPGA: Recv ZSGSRD 36476
17-03-17 20:11:43.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.918 -07 000000576 INF: FPGA: Recv ZSGSRD 36480
17-03-17 20:11:43.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.928 -07 000000576 INF: FPGA: Recv ZSGSRD 36478
17-03-17 20:11:43.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:43.938 -07 000000429 INF: FPGA: Recv ZSGSRD 36476
17-03-17 20:11:43.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.948 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:43.948 -07 000000458 INF: FPGA: Recv ZPIEZORD 32729
17-03-17 20:11:43.958 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.3 V.
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36482 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36480 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36476 (-173.8 uncal um), Max = 36490 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36482, posNoise = 8, negNoise = 6
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: After move to -0.174685, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: Settle wait time = 1423 ms, measure time = 103 ms (allowed 150 ms), total time = 1526 ms
17-03-17 20:11:43.958 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:44.008 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1896 ms
17-03-17 20:11:44.008 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:44.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:44.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:44.008 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:44.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:44.008 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:44.008 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:44.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:44.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:44.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:44.018 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:44.028 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:11:44.028 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:11:44.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:44.078 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:44.278 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:44.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:44.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:44.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:44.318 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:44.318 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:44.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:11:44.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:11:44.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:44.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:44.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:11:44.418 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:44.418 -07 000000382 INF: Autofocus start
17-03-17 20:11:44.418 -07 000000382 INF: MeasureProfile start
17-03-17 20:11:44.418 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:44.428 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:44.428 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:44.428 -07 000000382 INF: MeasureProfile done
17-03-17 20:11:44.428 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:11:44.428 -07 000000382 INF: Autofocus finished
17-03-17 20:11:44.628 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:44.628 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:44.628 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174691459366858. ----------
17-03-17 20:11:44.628 -07 000000610 INF: Cycle	35	Tile	15	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:44.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36657, sync = True, waitForSettling = True)
17-03-17 20:11:44.638 -07 000000610 INF: Z Motor: Moving to -0.167805 mm, started at -0.174691 mm, distance = 6.89 um
17-03-17 20:11:44.638 -07 000000610 INF: FPGA: Xmit ZDACW 36657\n [Z Motor]
17-03-17 20:11:44.638 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:11:44.648 -07 000000610 INF: FPGA: 'ZDACW 36657' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:44.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:44.648 -07 000000382 INF: FPGA: Recv ZDACR 36657
17-03-17 20:11:44.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.808 -07 000000458 INF: FPGA: Recv ZSGSRD 35410
17-03-17 20:11:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.818 -07 000000459 INF: FPGA: Recv ZSGSRD 35410
17-03-17 20:11:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.828 -07 000000429 INF: FPGA: Recv ZSGSRD 35414
17-03-17 20:11:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35409
17-03-17 20:11:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35411
17-03-17 20:11:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35411
17-03-17 20:11:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.868 -07 000000475 INF: FPGA: Recv ZSGSRD 35412
17-03-17 20:11:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.878 -07 000000382 INF: FPGA: Recv ZSGSRD 35415
17-03-17 20:11:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.888 -07 000000459 INF: FPGA: Recv ZSGSRD 35407
17-03-17 20:11:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:44.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35414
17-03-17 20:11:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:44.908 -07 000000459 INF: FPGA: Recv ZPIEZORD 31314
17-03-17 20:11:44.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:44.918 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.0 V.
17-03-17 20:11:44.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35411 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35411 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35407 (-166.9 uncal um), Max = 35415 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:11:44.918 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35411, posNoise = 4, negNoise = 4
17-03-17 20:11:44.918 -07 000000610 INF: Z Motor: After move to -0.167805, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:44.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 20:11:44.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:44.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:44.928 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:44.928 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:44.928 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:44.928 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:44.928 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:44.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:44.928 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:44.928 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:44.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:44.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:44.928 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:44.928 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:44.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:44.928 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:44.948 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:11:44.948 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:11:44.948 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:11:44.948 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:11:44.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36834 150\n [Camera]
17-03-17 20:11:45.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:45.338 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.977204,
17-03-17 20:11:45.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:45.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:45.558 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:45.558 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:45.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:45.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:45.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:45.558 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:45.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:45.558 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:45.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36834 796
17-03-17 20:11:45.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:45.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:11:45.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:11:45.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:45.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:11:45.958 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:11:45.958 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:45.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:45.958 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:11:45.968 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:45.968 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:11:46.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:46.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:46.098 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:46.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:46.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:46.208 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:46.208 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:46.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:46.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:46.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:46.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:46.288 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:46.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36834 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall
17-03-17 20:11:46.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:46.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167811128163032. ------
17-03-17 20:11:46.298 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:46.298 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17366 mm
17-03-17 20:11:46.298 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:46.298 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:11:46.298 -07 000000475 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:11:46.298 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37935, sync = True, waitForSettling = False)
17-03-17 20:11:46.298 -07 000000623 INF: Z Motor: Moving to -0.173655 mm, started at -0.167811 mm, distance = -5.84 um
17-03-17 20:11:46.298 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:46.308 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:46.308 -07 000000623 INF: FPGA: Xmit ZDACW 37935\n [Z Motor]
17-03-17 20:11:46.308 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:11:46.318 -07 000000623 INF: FPGA: 'ZDACW 37935' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:11:46.318 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:46.318 -07 000000576 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:11:46.328 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:46.328 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:11:46.328 -07 000000475 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:46.328 -07 000000475 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:46.328 -07 000000475 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:11:46.338 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:46.338 -07 000000502 INF: FPGA: Recv ZDACR 37935
17-03-17 20:11:46.348 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:46.348 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:46.348 -07 000000623 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:11:46.528 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:46.528 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:11:46.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:11:46.608 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:11:46.608 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:46.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:11:46.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:11:46.618 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:46.618 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:46.618 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:46.618 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:11:46.628 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:11:46.718 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:11:46.718 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:11:46.758 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:46.758 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:46.758 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:11:46.768 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:46.768 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:46.768 -07 000000475 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:11:46.768 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 20:11:47.718 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:47.718 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:11:47.728 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:47.728 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:47.748 -07 000000475 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:47.748 -07 000000475 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:47.748 -07 000000475 INF: Y Motor: Moved to 72.3496 after 1446 ms (table move)
17-03-17 20:11:47.748 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173655 mm (DAC = 37935)
17-03-17 20:11:47.748 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.748 -07 000000627 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:11:47.758 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:47.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36315
17-03-17 20:11:47.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.768 -07 000000627 INF: FPGA: Recv ZSGSRD 36322
17-03-17 20:11:47.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.778 -07 000000627 INF: FPGA: Recv ZSGSRD 36321
17-03-17 20:11:47.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36326
17-03-17 20:11:47.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.798 -07 000000429 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:11:47.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36319
17-03-17 20:11:47.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36328
17-03-17 20:11:47.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:47.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.828 -07 000000627 INF: FPGA: Recv ZSGSRD 36318
17-03-17 20:11:47.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:47.838 -07 000000475 INF: FPGA: Recv ZSGSRD 36313
17-03-17 20:11:47.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.848 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:47.848 -07 000000627 INF: FPGA: Recv ZPIEZORD 32536
17-03-17 20:11:47.858 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.4 V.
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36321 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36328 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36321, posNoise = 7, negNoise = 8
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: After move to -0.173655, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:11:47.858 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:47.908 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:11:47.908 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:47.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:47.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:47.908 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:47.908 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:47.908 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:47.908 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:47.908 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:47.908 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:47.918 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:47.918 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:47.928 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 20:11:47.928 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:11:47.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:47.978 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:48.178 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:48.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:48.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:48.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:48.218 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:48.218 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:48.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:11:48.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:11:48.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:48.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:48.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:11:48.318 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:48.318 -07 000000459 INF: Autofocus start
17-03-17 20:11:48.318 -07 000000459 INF: MeasureProfile start
17-03-17 20:11:48.318 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:48.328 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:11:48.328 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:48.338 -07 000000459 INF: MeasureProfile done
17-03-17 20:11:48.338 -07 000000459 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:11:48.338 -07 000000459 INF: Autofocus finished
17-03-17 20:11:48.528 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:48.528 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 20:11:48.528 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173657161212035. ----------
17-03-17 20:11:48.538 -07 000000610 INF: Cycle	35	Tile	16	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:48.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36486, sync = True, waitForSettling = True)
17-03-17 20:11:48.538 -07 000000610 INF: Z Motor: Moving to -0.167022 mm, started at -0.173657 mm, distance = 6.63 um
17-03-17 20:11:48.538 -07 000000610 INF: FPGA: Xmit ZDACW 36486\n [Z Motor]
17-03-17 20:11:48.538 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:11:48.548 -07 000000610 INF: FPGA: 'ZDACW 36486' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:48.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:48.548 -07 000000459 INF: FPGA: Recv ZDACR 36486
17-03-17 20:11:48.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.708 -07 000000458 INF: FPGA: Recv ZSGSRD 35291
17-03-17 20:11:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:48.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.718 -07 000000475 INF: FPGA: Recv ZSGSRD 35295
17-03-17 20:11:48.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.728 -07 000000429 INF: FPGA: Recv ZSGSRD 35284
17-03-17 20:11:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.738 -07 000000475 INF: FPGA: Recv ZSGSRD 35291
17-03-17 20:11:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.748 -07 000000627 INF: FPGA: Recv ZSGSRD 35291
17-03-17 20:11:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.758 -07 000000475 INF: FPGA: Recv ZSGSRD 35290
17-03-17 20:11:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.768 -07 000000458 INF: FPGA: Recv ZSGSRD 35292
17-03-17 20:11:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.778 -07 000000459 INF: FPGA: Recv ZSGSRD 35292
17-03-17 20:11:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.788 -07 000000459 INF: FPGA: Recv ZSGSRD 35294
17-03-17 20:11:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:48.798 -07 000000429 INF: FPGA: Recv ZSGSRD 35285
17-03-17 20:11:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:48.808 -07 000000627 INF: FPGA: Recv ZPIEZORD 31158
17-03-17 20:11:48.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:48.818 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.1 V.
17-03-17 20:11:48.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35290 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35291 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35295 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:11:48.818 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35290, posNoise = 5, negNoise = 6
17-03-17 20:11:48.818 -07 000000610 INF: Z Motor: After move to -0.167022, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:48.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:11:48.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:48.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:48.818 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:48.818 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:48.818 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:48.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:48.818 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:48.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:48.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:48.818 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:48.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:48.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:48.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:48.828 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:48.828 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:11:48.828 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:48.828 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:48.828 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:11:48.838 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:11:48.838 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:48.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36662 150\n [Camera]
17-03-17 20:11:49.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:49.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:49.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:49.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:49.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:49.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:49.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:49.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:49.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:49.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:49.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:49.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36662 796
17-03-17 20:11:49.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:49.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:49.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:11:49.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:49.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:11:49.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:11:49.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:49.838 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:49.838 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:11:49.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:11:49.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:11:49.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:49.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:49.988 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:50.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:50.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:50.098 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:50.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:50.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:50.108 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:50.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:50.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:50.178 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:50.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36662 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:11:50.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:50.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167033798493879. ------
17-03-17 20:11:50.188 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:50.188 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17347 mm
17-03-17 20:11:50.188 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:50.188 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:11:50.188 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:11:50.188 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37894, sync = True, waitForSettling = False)
17-03-17 20:11:50.188 -07 000000424 INF: Z Motor: Moving to -0.173468 mm, started at -0.167034 mm, distance = -6.43 um
17-03-17 20:11:50.188 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:50.198 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:50.198 -07 000000424 INF: FPGA: Xmit ZDACW 37894\n [Z Motor]
17-03-17 20:11:50.198 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:11:50.208 -07 000000424 INF: FPGA: 'ZDACW 37894' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:11:50.208 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:50.208 -07 000000382 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:11:50.218 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:50.218 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:11:50.218 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:50.218 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:50.218 -07 000000569 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:11:50.228 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:50.228 -07 000000576 INF: FPGA: Recv ZDACR 37894
17-03-17 20:11:50.238 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:50.238 -07 000000424 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:11:50.238 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:50.418 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:50.418 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 20:11:50.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:11:50.498 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:11:50.498 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:50.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:11:50.498 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:11:50.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:50.498 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:50.498 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:11:50.498 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 20:11:50.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:11:50.608 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:11:50.608 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:11:50.648 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:50.648 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:11:50.658 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:50.658 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:50.658 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:11:50.658 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-17 20:11:50.728 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.994908,
17-03-17 20:11:51.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:51.608 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:11:51.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:51.618 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:51.638 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:51.638 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:51.638 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1447 ms (table move)
17-03-17 20:11:51.638 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173468 mm (DAC = 37894)
17-03-17 20:11:51.638 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.638 -07 000000569 INF: FPGA: Recv ZSGSRD 36296
17-03-17 20:11:51.648 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:11:51.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.648 -07 000000569 INF: FPGA: Recv ZSGSRD 36286
17-03-17 20:11:51.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36296
17-03-17 20:11:51.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.668 -07 000000569 INF: FPGA: Recv ZSGSRD 36297
17-03-17 20:11:51.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.678 -07 000000459 INF: FPGA: Recv ZSGSRD 36293
17-03-17 20:11:51.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.688 -07 000000459 INF: FPGA: Recv ZSGSRD 36302
17-03-17 20:11:51.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.698 -07 000000486 INF: FPGA: Recv ZSGSRD 36292
17-03-17 20:11:51.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.708 -07 000000486 INF: FPGA: Recv ZSGSRD 36289
17-03-17 20:11:51.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.718 -07 000000486 INF: FPGA: Recv ZSGSRD 36287
17-03-17 20:11:51.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:51.728 -07 000000486 INF: FPGA: Recv ZSGSRD 36289
17-03-17 20:11:51.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.738 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:51.738 -07 000000458 INF: FPGA: Recv ZPIEZORD 32500
17-03-17 20:11:51.748 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -8.4 V.
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36293 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36292 (-172.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36286 (-172.5 uncal um), Max = 36302 (-172.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36293, posNoise = 9, negNoise = 7
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: After move to -0.173468, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 20:11:51.748 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:51.758 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:51.798 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:11:51.798 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:51.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:51.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:51.798 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:51.798 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:51.798 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:51.798 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:51.798 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:51.798 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:51.808 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:51.808 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:51.818 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:11:51.818 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:11:51.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:51.868 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:52.068 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:52.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:52.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:52.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:52.108 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:52.108 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:52.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:11:52.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:11:52.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:52.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:11:52.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:11:52.208 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:52.208 -07 000000429 INF: Autofocus start
17-03-17 20:11:52.208 -07 000000429 INF: MeasureProfile start
17-03-17 20:11:52.208 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:52.218 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:11:52.218 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:52.218 -07 000000429 INF: MeasureProfile done
17-03-17 20:11:52.218 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:11:52.218 -07 000000429 INF: Autofocus finished
17-03-17 20:11:52.418 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:52.418 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:11:52.418 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173477283272065. ----------
17-03-17 20:11:52.428 -07 000000610 INF: Cycle	35	Tile	17	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:52.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36409, sync = True, waitForSettling = True)
17-03-17 20:11:52.428 -07 000000610 INF: Z Motor: Moving to -0.166670 mm, started at -0.173477 mm, distance = 6.81 um
17-03-17 20:11:52.428 -07 000000610 INF: FPGA: Xmit ZDACW 36409\n [Z Motor]
17-03-17 20:11:52.428 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:11:52.438 -07 000000610 INF: FPGA: 'ZDACW 36409' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:52.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:52.438 -07 000000429 INF: FPGA: Recv ZDACR 36409
17-03-17 20:11:52.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:52.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.598 -07 000000486 INF: FPGA: Recv ZSGSRD 35232
17-03-17 20:11:52.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:52.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35236
17-03-17 20:11:52.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35233
17-03-17 20:11:52.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.628 -07 000000486 INF: FPGA: Recv ZSGSRD 35236
17-03-17 20:11:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35236
17-03-17 20:11:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.648 -07 000000486 INF: FPGA: Recv ZSGSRD 35234
17-03-17 20:11:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.658 -07 000000576 INF: FPGA: Recv ZSGSRD 35242
17-03-17 20:11:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.668 -07 000000429 INF: FPGA: Recv ZSGSRD 35237
17-03-17 20:11:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.678 -07 000000569 INF: FPGA: Recv ZSGSRD 35235
17-03-17 20:11:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:52.688 -07 000000486 INF: FPGA: Recv ZSGSRD 35231
17-03-17 20:11:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:52.698 -07 000000576 INF: FPGA: Recv ZPIEZORD 31104
17-03-17 20:11:52.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:52.708 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.1 V.
17-03-17 20:11:52.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35235 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35231 (-165.8 uncal um), Max = 35242 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:11:52.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35235, posNoise = 7, negNoise = 4
17-03-17 20:11:52.708 -07 000000610 INF: Z Motor: After move to -0.166670, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:52.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:11:52.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:52.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:52.708 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:52.708 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:52.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:52.708 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:52.708 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:52.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:52.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:11:52.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:52.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:52.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:52.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:52.708 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:52.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:52.708 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:52.718 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:11:52.728 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:11:52.728 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:11:52.728 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:11:52.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36586 150\n [Camera]
17-03-17 20:11:52.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:53.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:53.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:53.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:53.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:53.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:53.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:53.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:53.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:53.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:53.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:53.528 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36586 796
17-03-17 20:11:53.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:11:53.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:11:53.718 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:11:53.718 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:53.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:11:53.718 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:11:53.718 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:53.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:11:53.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:11:53.728 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:11:53.728 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:11:53.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:53.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:53.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:53.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:53.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:53.998 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:53.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:53.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:53.998 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:53.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:54.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:54.068 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:54.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36586 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-17 20:11:54.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:54.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166680466826082. ------
17-03-17 20:11:54.078 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:54.078 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17319 mm
17-03-17 20:11:54.078 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:54.078 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:54.078 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:11:54.078 -07 000000608 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:11:54.078 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37834, sync = True, waitForSettling = False)
17-03-17 20:11:54.078 -07 000000623 INF: Z Motor: Moving to -0.173193 mm, started at -0.166680 mm, distance = -6.51 um
17-03-17 20:11:54.088 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:54.088 -07 000000623 INF: FPGA: Xmit ZDACW 37834\n [Z Motor]
17-03-17 20:11:54.088 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:11:54.098 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:54.098 -07 000000623 INF: FPGA: 'ZDACW 37834' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:11:54.098 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:11:54.108 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:54.108 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:11:54.108 -07 000000608 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:54.108 -07 000000608 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:54.108 -07 000000608 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:11:54.118 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:54.118 -07 000000462 INF: FPGA: Recv ZDACR 37834
17-03-17 20:11:54.128 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:54.128 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:11:54.128 -07 000000623 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:11:54.308 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:54.308 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:54.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:11:54.398 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:11:54.398 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:54.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:11:54.398 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:11:54.398 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:54.398 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:54.408 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:11:54.408 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 20:11:54.408 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:11:54.508 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:11:54.508 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 399 ms overall
17-03-17 20:11:54.538 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:54.538 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:11:54.548 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:54.548 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:54.548 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:11:54.548 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.121 mm/sec
17-03-17 20:11:55.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:55.498 -07 000000429 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:11:55.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:55.508 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:55.518 -07 000000608 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:55.518 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:11:55.518 -07 000000608 INF: Y Motor: Moved to 74.0083 after 1442 ms (table move)
17-03-17 20:11:55.528 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173193 mm (DAC = 37834)
17-03-17 20:11:55.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.528 -07 000000623 INF: FPGA: Recv ZSGSRD 36251
17-03-17 20:11:55.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:55.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.538 -07 000000382 INF: FPGA: Recv ZSGSRD 36247
17-03-17 20:11:55.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.548 -07 000000608 INF: FPGA: Recv ZSGSRD 36252
17-03-17 20:11:55.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.558 -07 000000382 INF: FPGA: Recv ZSGSRD 36255
17-03-17 20:11:55.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.568 -07 000000438 INF: FPGA: Recv ZSGSRD 36252
17-03-17 20:11:55.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36248
17-03-17 20:11:55.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.588 -07 000000382 INF: FPGA: Recv ZSGSRD 36252
17-03-17 20:11:55.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.598 -07 000000438 INF: FPGA: Recv ZSGSRD 36245
17-03-17 20:11:55.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36248
17-03-17 20:11:55.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:55.618 -07 000000438 INF: FPGA: Recv ZSGSRD 36253
17-03-17 20:11:55.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:55.628 -07 000000475 INF: FPGA: Recv ZPIEZORD 32431
17-03-17 20:11:55.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.4 V.
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36250 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36245 (-172.3 uncal um), Max = 36255 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36250, posNoise = 5, negNoise = 5
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: After move to -0.173193, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: Settle wait time = 1445 ms, measure time = 109 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:11:55.638 -07 000000431 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:55.688 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:11:55.688 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:55.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:55.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:55.688 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:55.688 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:55.688 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:55.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:55.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:11:55.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:55.698 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:11:55.698 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:55.708 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:11:55.708 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:11:55.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:55.758 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:11:55.958 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:11:55.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:11:55.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:11:55.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:11:55.998 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:11:55.998 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:11:55.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:11:56.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:11:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:11:56.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:11:56.098 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.015368,
17-03-17 20:11:56.098 -07 000000576 INF: Autofocus start
17-03-17 20:11:56.098 -07 000000576 INF: MeasureProfile start
17-03-17 20:11:56.108 -07 000000576 INF: MeasureProfile done
17-03-17 20:11:56.108 -07 000000576 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:11:56.108 -07 000000576 INF: Autofocus finished
17-03-17 20:11:56.118 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:56.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:56.128 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:11:56.148 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:11:56.348 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:11:56.348 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:11:56.348 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.17320104214997. ----------
17-03-17 20:11:56.348 -07 000000610 INF: Cycle	35	Tile	18	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:11:56.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36295, sync = True, waitForSettling = True)
17-03-17 20:11:56.358 -07 000000610 INF: Z Motor: Moving to -0.166148 mm, started at -0.173201 mm, distance = 7.05 um
17-03-17 20:11:56.358 -07 000000610 INF: FPGA: Xmit ZDACW 36295\n [Z Motor]
17-03-17 20:11:56.358 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:11:56.368 -07 000000610 INF: FPGA: 'ZDACW 36295' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:56.368 -07 000000608 INF: FPGA: Recv ZDACR 36295
17-03-17 20:11:56.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:11:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.528 -07 000000569 INF: FPGA: Recv ZSGSRD 35148
17-03-17 20:11:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.538 -07 000000486 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:11:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:11:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35149
17-03-17 20:11:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.568 -07 000000569 INF: FPGA: Recv ZSGSRD 35153
17-03-17 20:11:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35156
17-03-17 20:11:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:11:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.598 -07 000000475 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:11:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.608 -07 000000623 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:11:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:56.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:11:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:56.628 -07 000000576 INF: FPGA: Recv ZPIEZORD 30988
17-03-17 20:11:56.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:56.638 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.2 V.
17-03-17 20:11:56.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35153 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35152 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35148 (-165.3 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:11:56.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35153, posNoise = 4, negNoise = 5
17-03-17 20:11:56.638 -07 000000610 INF: Z Motor: After move to -0.166148, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:56.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:11:56.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:56.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:56.638 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:56.638 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:11:56.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:56.638 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:56.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:56.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:11:56.638 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:11:56.638 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:11:56.638 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:11:56.638 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:11:56.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:56.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:11:56.648 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:11:56.648 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:11:56.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:11:56.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:11:56.658 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:11:56.658 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:11:56.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36472 150\n [Camera]
17-03-17 20:11:56.758 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:11:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:11:56.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:11:57.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:11:57.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:11:57.268 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:57.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:57.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:11:57.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:11:57.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:11:57.268 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:57.268 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:57.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:11:57.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36472 796
17-03-17 20:11:57.618 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:11:57.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:11:57.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:11:57.648 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:57.658 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:57.658 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:11:57.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:11:57.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:11:57.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:57.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:57.678 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:11:57.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:11:57.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:11:57.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:11:57.928 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:11:57.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:11:57.928 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:11:57.928 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:11:57.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:11:57.928 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:11:57.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:11:57.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:11:57.998 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:11:57.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36472 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-17 20:11:58.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:11:58.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166153681430458. ------
17-03-17 20:11:58.008 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:11:58.008 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17252 mm
17-03-17 20:11:58.008 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:11:58.008 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:11:58.008 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:11:58.008 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37688, sync = True, waitForSettling = False)
17-03-17 20:11:58.008 -07 000000475 INF: Z Motor: Moving to -0.172525 mm, started at -0.166154 mm, distance = -6.37 um
17-03-17 20:11:58.018 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:58.028 -07 000000475 INF: FPGA: Xmit ZDACW 37688\n [Z Motor]
17-03-17 20:11:58.308 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:11:58.308 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:11:58.308 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:58.308 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:11:58.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:11:58.308 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:11:58.308 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:11:58.318 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:11:58.318 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:11:58.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 20:11:58.328 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:11:58.328 -07 000000438 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:11:58.328 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 315 ms to get response, and 321 ms overall
17-03-17 20:11:58.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 305 ms to get response, and 317 ms overall
17-03-17 20:11:58.328 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:11:58.328 -07 000000475 INF: FPGA: 'ZDACW 37688' command took 0 ms to send, 295 ms to get response, and 316 ms overall
17-03-17 20:11:58.328 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:11:58.328 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:58.328 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:11:58.328 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:11:58.328 -07 000000438 INF: FPGA: Recv ZDACR 37688
17-03-17 20:11:58.338 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:11:58.338 -07 000000475 INF: Z Motor: MoveAbsStepped took 320 ms (did NOT wait for settling yet))
17-03-17 20:11:58.338 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:11:58.348 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:11:58.538 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:11:58.538 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-17 20:11:58.718 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:11:58.718 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:11:58.748 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:58.748 -07 000000475 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:11:58.758 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:58.758 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:58.758 -07 000000576 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:11:58.758 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 20:11:59.708 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:11:59.708 -07 000000438 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:11:59.718 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:11:59.718 -07 000000576 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:11:59.728 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:11:59.728 -07 000000576 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:11:59.728 -07 000000576 INF: Y Motor: Moved to 74.8325 after 1717 ms (table move)
17-03-17 20:11:59.728 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172525 mm (DAC = 37688)
17-03-17 20:11:59.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.738 -07 000000438 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:11:59.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:11:59.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.738 -07 000000486 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:11:59.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:11:59.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.748 -07 000000438 INF: FPGA: Recv ZSGSRD 36138
17-03-17 20:11:59.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36143
17-03-17 20:11:59.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.768 -07 000000438 INF: FPGA: Recv ZSGSRD 36140
17-03-17 20:11:59.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:11:59.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.788 -07 000000475 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:11:59.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.798 -07 000000576 INF: FPGA: Recv ZSGSRD 36148
17-03-17 20:11:59.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.808 -07 000000476 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:11:59.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:11:59.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36142
17-03-17 20:11:59.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:11:59.828 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:11:59.828 -07 000000475 INF: FPGA: Recv ZPIEZORD 32336
17-03-17 20:11:59.838 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.4 V.
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36146 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36148 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36138 (-171.6 uncal um), Max = 36153 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36146, posNoise = 7, negNoise = 8
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: After move to -0.172525, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: Settle wait time = 1719 ms, measure time = 102 ms (allowed 150 ms), total time = 1821 ms
17-03-17 20:11:59.838 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:11:59.888 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1875 ms
17-03-17 20:11:59.888 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:11:59.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:11:59.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:11:59.888 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:11:59.888 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:11:59.888 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:11:59.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:11:59.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:11:59.888 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:11:59.898 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:11:59.898 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:11:59.908 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:11:59.908 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:11:59.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:11:59.958 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:00.158 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:00.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:00.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:00.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:12:00.198 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:00.198 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:00.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:12:00.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:00.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:00.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:00.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:12:00.298 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:00.298 -07 000000627 INF: Autofocus start
17-03-17 20:12:00.298 -07 000000627 INF: MeasureProfile start
17-03-17 20:12:00.298 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:00.308 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:00.308 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:00.308 -07 000000627 INF: MeasureProfile done
17-03-17 20:12:00.308 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:12:00.308 -07 000000627 INF: Autofocus finished
17-03-17 20:12:00.508 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:00.508 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:12:00.508 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172532924087227. ----------
17-03-17 20:12:00.518 -07 000000610 INF: Cycle	35	Tile	19	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:00.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36202, sync = True, waitForSettling = True)
17-03-17 20:12:00.518 -07 000000610 INF: Z Motor: Moving to -0.165722 mm, started at -0.172533 mm, distance = 6.81 um
17-03-17 20:12:00.518 -07 000000610 INF: FPGA: Xmit ZDACW 36202\n [Z Motor]
17-03-17 20:12:00.518 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:12:00.528 -07 000000610 INF: FPGA: 'ZDACW 36202' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:00.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:00.528 -07 000000475 INF: FPGA: Recv ZDACR 36202
17-03-17 20:12:00.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:00.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.688 -07 000000438 INF: FPGA: Recv ZSGSRD 35084
17-03-17 20:12:00.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:00.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35085
17-03-17 20:12:00.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.708 -07 000000438 INF: FPGA: Recv ZSGSRD 35091
17-03-17 20:12:00.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.718 -07 000000476 INF: FPGA: Recv ZSGSRD 35084
17-03-17 20:12:00.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35093
17-03-17 20:12:00.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.738 -07 000000476 INF: FPGA: Recv ZSGSRD 35087
17-03-17 20:12:00.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.748 -07 000000476 INF: FPGA: Recv ZSGSRD 35091
17-03-17 20:12:00.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.758 -07 000000476 INF: FPGA: Recv ZSGSRD 35090
17-03-17 20:12:00.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35083
17-03-17 20:12:00.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:00.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35085
17-03-17 20:12:00.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:00.788 -07 000000476 INF: FPGA: Recv ZPIEZORD 30941
17-03-17 20:12:00.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:00.798 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.1 V.
17-03-17 20:12:00.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35087 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35083 (-164.8 uncal um), Max = 35093 (-164.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:00.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35087, posNoise = 6, negNoise = 4
17-03-17 20:12:00.798 -07 000000610 INF: Z Motor: After move to -0.165722, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:00.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:12:00.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:00.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:00.798 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:00.798 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:00.798 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:00.798 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:00.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:00.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:00.798 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:00.798 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:00.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:00.798 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:00.798 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:00.808 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:12:00.808 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:00.808 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:00.808 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:00.818 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:00.818 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:12:00.818 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:12:00.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36379 150\n [Camera]
17-03-17 20:12:01.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:01.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:01.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:01.428 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:01.428 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:01.428 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:12:01.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:01.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:01.428 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:01.428 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:01.428 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:12:01.468 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.012614,
17-03-17 20:12:01.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36379 796
17-03-17 20:12:01.758 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:01.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:01.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:01.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:12:01.798 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:12:01.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:01.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:12:01.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:12:01.808 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:01.808 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:01.808 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:01.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:12:01.818 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:12:01.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:01.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:01.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:01.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:01.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:01.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:01.968 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:01.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:12:01.978 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:01.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:12:02.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:02.158 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:02.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36379 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:12:02.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:12:02.368 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:12:02.368 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:02.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:12:02.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:12:02.368 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:02.368 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:02.378 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:12:02.378 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:12:02.378 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:12:02.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:12:02.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:12:02.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:12:02.458 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 20:12:02.458 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:12:02.458 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:12:02.468 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 20:12:02.468 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:12:02.468 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:12:02.968 -07 000000462 INF: FPGA: Recv EMIN
17-03-17 20:12:02.968 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 20:12:02.968 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:12:02.968 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 20:12:02.978 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:02.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:02.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165729683429102. ------
17-03-17 20:12:02.978 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:02.978 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14034 mm
17-03-17 20:12:02.978 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:02.978 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:12:02.978 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:12:02.978 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30657, sync = True, waitForSettling = False)
17-03-17 20:12:02.978 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:02.978 -07 000000623 INF: Z Motor: Moving to -0.140339 mm, started at -0.165730 mm, distance = 25.39 um
17-03-17 20:12:02.988 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:12:02.988 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:02.988 -07 000000458 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:12:02.998 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:02.998 -07 000000438 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:02.998 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:02.998 -07 000000438 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:12:02.998 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:12:03.008 -07 000000623 INF: FPGA: Xmit ZDACW 30657\n [Z Motor]
17-03-17 20:12:03.008 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:12:03.018 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:12:03.018 -07 000000623 INF: FPGA: 'ZDACW 30657' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:12:03.028 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:03.028 -07 000000627 INF: FPGA: Recv ZDACR 30657
17-03-17 20:12:03.038 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:12:03.038 -07 000000623 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:12:03.198 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:03.198 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:12:04.638 -07 000000458 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:12:04.638 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1646 ms overall
17-03-17 20:12:04.638 -07 000000438 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:12:04.638 -07 000000438 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:12:04.638 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 20:12:06.758 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:06.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.02213,
17-03-17 20:12:07.488 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:07.488 -07 000000458 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:12:07.498 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:07.498 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:07.518 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:07.518 -07 000000438 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:12:07.518 -07 000000438 INF: Y Motor: Moved to 59.9111 after 4540 ms
17-03-17 20:12:07.528 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140339 mm (DAC = 30657)
17-03-17 20:12:07.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.528 -07 000000576 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:12:07.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:07.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.538 -07 000000458 INF: FPGA: Recv ZSGSRD 31139
17-03-17 20:12:07.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.548 -07 000000623 INF: FPGA: Recv ZSGSRD 31135
17-03-17 20:12:07.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.558 -07 000000627 INF: FPGA: Recv ZSGSRD 31134
17-03-17 20:12:07.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.568 -07 000000458 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:12:07.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.578 -07 000000627 INF: FPGA: Recv ZSGSRD 31138
17-03-17 20:12:07.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.588 -07 000000438 INF: FPGA: Recv ZSGSRD 31134
17-03-17 20:12:07.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.598 -07 000000429 INF: FPGA: Recv ZSGSRD 31130
17-03-17 20:12:07.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.608 -07 000000438 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:12:07.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:07.618 -07 000000429 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:12:07.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.628 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:07.628 -07 000000438 INF: FPGA: Recv ZPIEZORD 26796
17-03-17 20:12:07.638 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.678 V. Piezo Error = -9.5 V.
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31136 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31136 (-139.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31130 (-139.5 uncal um), Max = 31141 (-139.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31136, posNoise = 5, negNoise = 6
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: After move to -0.140339, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: Settle wait time = 4542 ms, measure time = 108 ms (allowed 150 ms), total time = 4650 ms
17-03-17 20:12:07.638 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:07.688 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:12:07.688 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:07.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:07.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:07.688 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:07.688 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:07.688 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:07.688 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:07.688 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:07.688 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:12:07.718 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 20:12:07.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:07.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:12:07.718 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:07.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:12:07.728 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 38 ms.
17-03-17 20:12:07.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:07.778 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:07.978 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:07.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:07.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:07.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 20:12:08.018 -07 000000438 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:12:08.018 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:08.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 20:12:08.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:12:08.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:08.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:08.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:12:08.118 -07 000000462 INF: Image SNR check: start
17-03-17 20:12:08.118 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:08.118 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:08.128 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:08.128 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:08.138 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=64.41]
17-03-17 20:12:08.138 -07 000000462 INF: Autofocus start
17-03-17 20:12:08.138 -07 000000462 INF: MeasureProfile start
17-03-17 20:12:08.148 -07 000000462 INF: MeasureProfile done
17-03-17 20:12:08.148 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:12:08.148 -07 000000462 INF: Autofocus finished
17-03-17 20:12:08.328 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:08.328 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:08.328 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140347621257004. ----------
17-03-17 20:12:08.328 -07 000000610 INF: Cycle	35	Tile	1	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:08.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29152, sync = True, waitForSettling = True)
17-03-17 20:12:08.338 -07 000000610 INF: Z Motor: Moving to -0.133449 mm, started at -0.140348 mm, distance = 6.90 um
17-03-17 20:12:08.338 -07 000000610 INF: FPGA: Xmit ZDACW 29152\n [Z Motor]
17-03-17 20:12:08.338 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:12:08.348 -07 000000610 INF: FPGA: 'ZDACW 29152' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:12:08.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:08.348 -07 000000462 INF: FPGA: Recv ZDACR 29152
17-03-17 20:12:08.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:08.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.508 -07 000000429 INF: FPGA: Recv ZSGSRD 30061
17-03-17 20:12:08.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.518 -07 000000424 INF: FPGA: Recv ZSGSRD 30061
17-03-17 20:12:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.528 -07 000000429 INF: FPGA: Recv ZSGSRD 30062
17-03-17 20:12:08.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.538 -07 000000424 INF: FPGA: Recv ZSGSRD 30061
17-03-17 20:12:08.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30066
17-03-17 20:12:08.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30057
17-03-17 20:12:08.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:12:08.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:12:08.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.588 -07 000000458 INF: FPGA: Recv ZSGSRD 30064
17-03-17 20:12:08.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:08.598 -07 000000438 INF: FPGA: Recv ZSGSRD 30059
17-03-17 20:12:08.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:08.608 -07 000000627 INF: FPGA: Recv ZPIEZORD 25618
17-03-17 20:12:08.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:08.618 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.8 V.
17-03-17 20:12:08.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30062 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30062 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30057 (-132.6 uncal um), Max = 30066 (-132.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:08.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30062, posNoise = 4, negNoise = 5
17-03-17 20:12:08.618 -07 000000610 INF: Z Motor: After move to -0.133449, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:08.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:12:08.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:08.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:08.618 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:08.618 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:08.618 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:08.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:08.618 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:08.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:08.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:08.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:08.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:08.618 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:12:08.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:08.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:08.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:08.628 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:08.638 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:12:08.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:08.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:12:08.648 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:08.648 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:08.658 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 20:12:08.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29328 150\n [Camera]
17-03-17 20:12:08.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:09.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:09.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:09.268 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:09.268 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:09.268 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) start.
17-03-17 20:12:09.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:09.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:09.268 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:09.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:09.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) start.
17-03-17 20:12:09.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29328 796
17-03-17 20:12:09.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:12:09.648 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2340745600, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:12:09.648 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:12:09.648 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:09.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2376167864, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:12:09.648 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:12:09.758 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:09.758 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 112 ms.
17-03-17 20:12:09.758 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 491 ms.
17-03-17 20:12:09.758 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:09.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 20:12:09.808 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:09.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:09.808 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:09.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:09.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:09.818 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:09.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:09.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:12:09.818 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:09.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:12:09.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:09.998 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:09.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29328 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:12:09.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:09.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133448017416753. ------
17-03-17 20:12:10.008 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:10.008 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13996 mm
17-03-17 20:12:10.008 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:10.008 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:10.018 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:10.018 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:12:10.018 -07 000000429 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:12:10.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:10.018 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30575, sync = True, waitForSettling = False)
17-03-17 20:12:10.018 -07 000000623 INF: Z Motor: Moving to -0.139963 mm, started at -0.133448 mm, distance = -6.52 um
17-03-17 20:12:10.018 -07 000000576 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:12:10.028 -07 000000623 INF: FPGA: Xmit ZDACW 30575\n [Z Motor]
17-03-17 20:12:10.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:10.028 -07 000000429 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:10.028 -07 000000429 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:10.028 -07 000000429 INF: Y Motor: Moving 1330 steps2
17-03-17 20:12:10.028 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:12:10.038 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:10.038 -07 000000623 INF: FPGA: 'ZDACW 30575' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:12:10.048 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:10.058 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:10.058 -07 000000502 INF: FPGA: Recv ZDACR 30575
17-03-17 20:12:10.068 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:10.068 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:12:10.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:12:10.208 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:12:10.208 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:10.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:12:10.208 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:12:10.208 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:10.208 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:10.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:12:10.218 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:10.218 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:12:10.238 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:10.238 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:12:10.418 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:12:10.418 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 20:12:10.448 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:10.458 -07 000000458 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:12:10.458 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:12:10.458 -07 000000429 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:10.458 -07 000000429 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:12:10.458 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 20:12:11.408 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:11.408 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:12:11.418 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:11.418 -07 000000429 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:11.438 -07 000000429 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:11.438 -07 000000429 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:11.438 -07 000000429 INF: Y Motor: Moved to 60.7329 after 1421 ms (table move)
17-03-17 20:12:11.438 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139963 mm (DAC = 30575)
17-03-17 20:12:11.438 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.438 -07 000000462 INF: FPGA: Recv ZSGSRD 31074
17-03-17 20:12:11.448 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:11.448 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.448 -07 000000424 INF: FPGA: Recv ZSGSRD 31076
17-03-17 20:12:11.458 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.458 -07 000000502 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:12:11.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.468 -07 000000431 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:12:11.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.478 -07 000000462 INF: FPGA: Recv ZSGSRD 31086
17-03-17 20:12:11.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.488 -07 000000458 INF: FPGA: Recv ZSGSRD 31081
17-03-17 20:12:11.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.498 -07 000000462 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:12:11.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.508 -07 000000431 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:12:11.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.518 -07 000000458 INF: FPGA: Recv ZSGSRD 31075
17-03-17 20:12:11.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:11.528 -07 000000458 INF: FPGA: Recv ZSGSRD 31075
17-03-17 20:12:11.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.538 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:11.538 -07 000000458 INF: FPGA: Recv ZPIEZORD 27003
17-03-17 20:12:11.548 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.665 V. Piezo Error = -9.0 V.
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31077 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31076 (-139.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31071 (-139.1 uncal um), Max = 31086 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31077, posNoise = 9, negNoise = 6
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: After move to -0.139963, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 20:12:11.548 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:11.598 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:12:11.598 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:11.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:11.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:11.598 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:11.598 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:11.598 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:11.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:11.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:11.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:11.608 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:11.608 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:11.618 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:12:11.618 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:12:11.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:11.668 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:11.758 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:11.868 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:11.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:11.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:11.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298711712, 0x0, 559484976) start.
17-03-17 20:12:11.898 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:11.908 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:11.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:12:11.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298711712, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:12:11.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:11.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:11.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:12:12.008 -07 000000431 INF: Autofocus start
17-03-17 20:12:12.008 -07 000000431 INF: MeasureProfile start
17-03-17 20:12:12.008 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:12.008 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:12.018 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:12.018 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:12.018 -07 000000431 INF: MeasureProfile done
17-03-17 20:12:12.018 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:12.018 -07 000000431 INF: Autofocus finished
17-03-17 20:12:12.208 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.005817,
17-03-17 20:12:12.218 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:12.218 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:12:12.228 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13996859274064. ----------
17-03-17 20:12:12.228 -07 000000610 INF: Cycle	35	Tile	2	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:12.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29083, sync = True, waitForSettling = True)
17-03-17 20:12:12.228 -07 000000610 INF: Z Motor: Moving to -0.133133 mm, started at -0.139969 mm, distance = 6.84 um
17-03-17 20:12:12.248 -07 000000610 INF: FPGA: Xmit ZDACW 29083\n [Z Motor]
17-03-17 20:12:12.248 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:12:12.258 -07 000000610 INF: FPGA: 'ZDACW 29083' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:12:12.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:12.258 -07 000000462 INF: FPGA: Recv ZDACR 29083
17-03-17 20:12:12.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:12:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:12.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.428 -07 000000462 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:12:12.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30012
17-03-17 20:12:12.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.448 -07 000000438 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:12:12.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:12:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.468 -07 000000438 INF: FPGA: Recv ZSGSRD 30018
17-03-17 20:12:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.478 -07 000000476 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:12:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.488 -07 000000438 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:12:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.498 -07 000000458 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:12:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:12.508 -07 000000431 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:12:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:12.518 -07 000000458 INF: FPGA: Recv ZPIEZORD 25608
17-03-17 20:12:12.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:12.528 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.7 V.
17-03-17 20:12:12.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30014 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30009 (-132.3 uncal um), Max = 30021 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:12.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30014, posNoise = 7, negNoise = 5
17-03-17 20:12:12.528 -07 000000610 INF: Z Motor: After move to -0.133133, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:12.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 297 ms)
17-03-17 20:12:12.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:12.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:12.528 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:12.528 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:12.528 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:12.528 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:12.528 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:12.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:12.528 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:12.528 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:12.528 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:12.528 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:12.538 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:12.538 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:12.538 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:12.538 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:12.548 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:12:12.548 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:12:12.548 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:12:12.548 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:12:12.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29259 150\n [Camera]
17-03-17 20:12:12.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:13.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:13.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:13.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:13.168 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:13.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:12:13.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:13.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:13.168 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:13.168 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:13.168 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:12:13.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29259 796
17-03-17 20:12:13.508 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:13.568 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:12:13.568 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:12:13.568 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:13.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:13.568 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:12:13.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:12:13.568 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:12:13.568 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:13.578 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:13.578 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:12:13.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:13.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:13.708 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:13.708 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:13.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:12:13.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:13.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:13.708 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:13.708 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:13.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:12:13.898 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:13.898 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:13.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29259 150' command took 2 ms to send, 1333 ms to get response, and 1343 ms overall
17-03-17 20:12:13.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:13.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133139655233948. ------
17-03-17 20:12:13.898 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:13.898 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13988 mm
17-03-17 20:12:13.898 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:13.908 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:13.908 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:12:13.908 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:13.908 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:12:13.908 -07 000000475 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:12:13.908 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30556, sync = True, waitForSettling = False)
17-03-17 20:12:13.908 -07 000000458 INF: Z Motor: Moving to -0.139876 mm, started at -0.133140 mm, distance = -6.74 um
17-03-17 20:12:13.918 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:13.918 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:12:13.928 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:12:13.928 -07 000000475 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:13.928 -07 000000458 INF: FPGA: Xmit ZDACW 30556\n [Z Motor]
17-03-17 20:12:13.928 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:12:13.928 -07 000000475 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:13.928 -07 000000475 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:12:13.938 -07 000000458 INF: FPGA: 'ZDACW 30556' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:12:13.938 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:13.938 -07 000000476 INF: FPGA: Recv ZDACR 30556
17-03-17 20:12:13.948 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:13.948 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:13.948 -07 000000458 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:12:14.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:12:14.098 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:12:14.098 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:14.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:12:14.098 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:12:14.098 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:14.108 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:14.108 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:12:14.108 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:12:14.108 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:14.108 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 204 ms overall
17-03-17 20:12:14.108 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:12:14.318 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:12:14.318 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:12:14.358 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:14.358 -07 000000459 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:12:14.368 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:14.368 -07 000000475 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:14.368 -07 000000475 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:12:14.368 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 20:12:15.318 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:15.318 -07 000000438 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:12:15.328 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:15.328 -07 000000475 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:15.348 -07 000000475 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:15.348 -07 000000475 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:15.348 -07 000000475 INF: Y Motor: Moved to 61.5640 after 1438 ms (table move)
17-03-17 20:12:15.348 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139876 mm (DAC = 30556)
17-03-17 20:12:15.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.348 -07 000000424 INF: FPGA: Recv ZSGSRD 31067
17-03-17 20:12:15.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:15.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.358 -07 000000627 INF: FPGA: Recv ZSGSRD 31057
17-03-17 20:12:15.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:15.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.368 -07 000000462 INF: FPGA: Recv ZSGSRD 31063
17-03-17 20:12:15.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.378 -07 000000486 INF: FPGA: Recv ZSGSRD 31072
17-03-17 20:12:15.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.388 -07 000000458 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:12:15.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.398 -07 000000382 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:12:15.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.408 -07 000000462 INF: FPGA: Recv ZSGSRD 31061
17-03-17 20:12:15.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.418 -07 000000382 INF: FPGA: Recv ZSGSRD 31067
17-03-17 20:12:15.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.428 -07 000000627 INF: FPGA: Recv ZSGSRD 31060
17-03-17 20:12:15.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:15.438 -07 000000429 INF: FPGA: Recv ZSGSRD 31058
17-03-17 20:12:15.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.448 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:15.448 -07 000000424 INF: FPGA: Recv ZPIEZORD 27008
17-03-17 20:12:15.458 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -8.9 V.
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31064 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31065 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31057 (-139.0 uncal um), Max = 31072 (-139.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31064, posNoise = 8, negNoise = 7
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: After move to -0.139876, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:12:15.458 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:15.508 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:12:15.508 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:15.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:15.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:15.508 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:15.508 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:15.508 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:15.508 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:15.508 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:15.508 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:15.518 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:15.518 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:15.518 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:12:15.528 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:12:15.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:15.568 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:15.768 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:15.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:15.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:15.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-17 20:12:15.808 -07 000000486 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:12:15.808 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:15.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:12:15.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:15.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:15.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:15.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:12:15.908 -07 000000623 INF: Autofocus start
17-03-17 20:12:15.908 -07 000000623 INF: MeasureProfile start
17-03-17 20:12:15.908 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:15.908 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:15.918 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:15.918 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:15.918 -07 000000623 INF: MeasureProfile done
17-03-17 20:12:15.918 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:15.918 -07 000000623 INF: Autofocus finished
17-03-17 20:12:16.118 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:16.118 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:12:16.118 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139885077982797. ----------
17-03-17 20:12:16.128 -07 000000610 INF: Cycle	35	Tile	3	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:16.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29063, sync = True, waitForSettling = True)
17-03-17 20:12:16.128 -07 000000610 INF: Z Motor: Moving to -0.133042 mm, started at -0.139885 mm, distance = 6.84 um
17-03-17 20:12:16.128 -07 000000610 INF: FPGA: Xmit ZDACW 29063\n [Z Motor]
17-03-17 20:12:16.128 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:12:16.138 -07 000000610 INF: FPGA: 'ZDACW 29063' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:16.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:16.138 -07 000000486 INF: FPGA: Recv ZDACR 29063
17-03-17 20:12:16.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:16.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.298 -07 000000569 INF: FPGA: Recv ZSGSRD 29998
17-03-17 20:12:16.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30000
17-03-17 20:12:16.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.318 -07 000000569 INF: FPGA: Recv ZSGSRD 30004
17-03-17 20:12:16.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29999
17-03-17 20:12:16.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.338 -07 000000438 INF: FPGA: Recv ZSGSRD 30000
17-03-17 20:12:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.348 -07 000000431 INF: FPGA: Recv ZSGSRD 30001
17-03-17 20:12:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29999
17-03-17 20:12:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30000
17-03-17 20:12:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29995
17-03-17 20:12:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:16.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30004
17-03-17 20:12:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:16.398 -07 000000569 INF: FPGA: Recv ZPIEZORD 25674
17-03-17 20:12:16.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:16.408 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.435 V. Piezo Error = -9.5 V.
17-03-17 20:12:16.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 30000 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30000 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29995 (-132.2 uncal um), Max = 30004 (-132.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:16.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30000, posNoise = 4, negNoise = 5
17-03-17 20:12:16.408 -07 000000610 INF: Z Motor: After move to -0.133042, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:16.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:12:16.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:16.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:16.408 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:16.408 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:16.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:16.408 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:16.408 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:16.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:16.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:16.408 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:16.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:16.408 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:16.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:16.418 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:16.418 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:16.418 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:16.418 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:12:16.418 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:16.428 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:12:16.428 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:12:16.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29240 150\n [Camera]
17-03-17 20:12:16.628 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:16.758 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:17.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:17.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:17.038 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:17.038 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:17.038 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:12:17.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:17.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:17.038 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:17.038 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:17.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:12:17.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29240 796
17-03-17 20:12:17.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:17.418 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:12:17.418 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:12:17.418 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:17.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:12:17.418 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:12:17.418 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:17.418 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:17.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:17.428 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:12:17.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:12:17.578 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.993549,
17-03-17 20:12:17.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:17.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:17.578 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:17.578 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:17.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:12:17.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:17.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:17.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:17.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:17.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:12:17.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:17.768 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:17.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29240 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall
17-03-17 20:12:17.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:17.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133049716263964. ------
17-03-17 20:12:17.778 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:17.778 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13910 mm
17-03-17 20:12:17.778 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:17.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:17.778 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:12:17.778 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:12:17.778 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30385, sync = True, waitForSettling = False)
17-03-17 20:12:17.778 -07 000000476 INF: Z Motor: Moving to -0.139094 mm, started at -0.133050 mm, distance = -6.04 um
17-03-17 20:12:17.788 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:17.788 -07 000000476 INF: FPGA: Xmit ZDACW 30385\n [Z Motor]
17-03-17 20:12:17.788 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:12:17.798 -07 000000476 INF: FPGA: 'ZDACW 30385' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:12:17.798 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:17.798 -07 000000458 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:12:17.808 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:12:17.808 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:17.808 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:17.808 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:17.808 -07 000000438 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:12:17.818 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:17.818 -07 000000424 INF: FPGA: Recv ZDACR 30385
17-03-17 20:12:17.828 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:17.828 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:17.828 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:12:17.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:12:17.978 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:12:17.978 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:17.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:12:17.988 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:12:17.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:17.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:12:17.988 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:12:17.988 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:17.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:12:18.008 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:18.008 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:12:18.198 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:12:18.198 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:12:18.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:18.238 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:12:18.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:18.248 -07 000000438 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:18.248 -07 000000438 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:12:18.248 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 20:12:19.198 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:19.198 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:12:19.208 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:19.208 -07 000000438 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:19.228 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:19.228 -07 000000438 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:19.228 -07 000000438 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-17 20:12:19.228 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139094 mm (DAC = 30385)
17-03-17 20:12:19.228 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:12:19.238 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:19.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30942
17-03-17 20:12:19.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.248 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30947
17-03-17 20:12:19.258 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.258 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.258 -07 000000438 INF: FPGA: Recv ZSGSRD 30948
17-03-17 20:12:19.268 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.268 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:12:19.278 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.278 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.278 -07 000000424 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:12:19.288 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.288 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:12:19.298 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.298 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.298 -07 000000438 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:12:19.308 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30945
17-03-17 20:12:19.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:19.318 -07 000000476 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:12:19.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.328 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:19.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 26925
17-03-17 20:12:19.338 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.8 V.
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30942 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30938 (-138.3 uncal um), Max = 30948 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30942, posNoise = 6, negNoise = 4
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: After move to -0.139094, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:12:19.338 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:19.388 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:12:19.388 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:19.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:19.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:19.388 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:19.388 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:19.388 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:19.388 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:19.388 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:19.388 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:19.398 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:19.398 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:19.398 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:12:19.398 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:12:19.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:19.458 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:19.658 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:19.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:19.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:19.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:12:19.688 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:19.698 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:19.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 20:12:19.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:12:19.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:19.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:19.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:12:19.798 -07 000000429 INF: Autofocus start
17-03-17 20:12:19.798 -07 000000429 INF: MeasureProfile start
17-03-17 20:12:19.798 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:19.798 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:19.808 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:19.808 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:19.808 -07 000000429 INF: MeasureProfile done
17-03-17 20:12:19.808 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:12:19.808 -07 000000429 INF: Autofocus finished
17-03-17 20:12:20.008 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:20.008 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:20.008 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139101324101503. ----------
17-03-17 20:12:20.008 -07 000000610 INF: Cycle	35	Tile	4	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:20.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28910, sync = True, waitForSettling = True)
17-03-17 20:12:20.018 -07 000000610 INF: Z Motor: Moving to -0.132341 mm, started at -0.139101 mm, distance = 6.76 um
17-03-17 20:12:20.018 -07 000000610 INF: FPGA: Xmit ZDACW 28910\n [Z Motor]
17-03-17 20:12:20.018 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:12:20.028 -07 000000610 INF: FPGA: 'ZDACW 28910' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:20.028 -07 000000424 INF: FPGA: Recv ZDACR 28910
17-03-17 20:12:20.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:20.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29889
17-03-17 20:12:20.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:20.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.198 -07 000000431 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:12:20.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:12:20.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.208 -07 000000476 INF: FPGA: Recv ZSGSRD 29885
17-03-17 20:12:20.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29894
17-03-17 20:12:20.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.228 -07 000000608 INF: FPGA: Recv ZSGSRD 29896
17-03-17 20:12:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:12:20.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29889
17-03-17 20:12:20.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.258 -07 000000569 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:12:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29891
17-03-17 20:12:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:20.278 -07 000000475 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:12:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:20.288 -07 000000462 INF: FPGA: Recv ZPIEZORD 25547
17-03-17 20:12:20.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:20.298 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.5 V.
17-03-17 20:12:20.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29891 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29892 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29885 (-131.5 uncal um), Max = 29896 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:12:20.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29891, posNoise = 5, negNoise = 6
17-03-17 20:12:20.298 -07 000000610 INF: Z Motor: After move to -0.132341, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:20.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:12:20.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:20.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:20.298 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:20.298 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:20.298 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:20.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:20.298 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:20.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:20.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:20.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:20.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:20.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:20.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:20.298 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:20.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:20.308 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:20.318 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:12:20.318 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:12:20.318 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 20:12:20.318 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:12:20.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29086 150\n [Camera]
17-03-17 20:12:20.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:20.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:20.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:20.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:20.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:20.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 20:12:20.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:20.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:20.938 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:20.938 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:20.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 20:12:21.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29086 796
17-03-17 20:12:21.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:21.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:12:21.318 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:12:21.318 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:21.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:21.328 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:12:21.328 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:12:21.328 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:21.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:21.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:12:21.328 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:12:21.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:21.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:21.478 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:21.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:21.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 20:12:21.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:21.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:21.478 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:21.478 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:21.478 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 20:12:21.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:21.668 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:21.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29086 150' command took 2 ms to send, 1333 ms to get response, and 1343 ms overall
17-03-17 20:12:21.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:21.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132349477140512. ------
17-03-17 20:12:21.678 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13900 mm
17-03-17 20:12:21.678 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:21.678 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:21.678 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:12:21.678 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:12:21.678 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30365, sync = True, waitForSettling = False)
17-03-17 20:12:21.678 -07 000000502 INF: Z Motor: Moving to -0.139002 mm, started at -0.132349 mm, distance = -6.65 um
17-03-17 20:12:21.688 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:21.698 -07 000000502 INF: FPGA: Xmit ZDACW 30365\n [Z Motor]
17-03-17 20:12:21.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:12:21.878 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:12:21.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:21.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:12:21.878 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:12:21.888 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:21.888 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:21.888 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:12:21.888 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:12:21.898 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:12:21.898 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:21.898 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:12:21.898 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 216 ms to get response, and 225 ms overall
17-03-17 20:12:21.908 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:12:21.908 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:21.908 -07 000000502 INF: FPGA: 'ZDACW 30365' command took 0 ms to send, 200 ms to get response, and 225 ms overall
17-03-17 20:12:21.908 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:21.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:21.908 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 225 ms overall
17-03-17 20:12:21.908 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:21.908 -07 000000475 INF: FPGA: Recv ZDACR 30365
17-03-17 20:12:21.908 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:21.908 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:12:21.918 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:21.918 -07 000000502 INF: Z Motor: MoveAbsStepped took 235 ms (did NOT wait for settling yet))
17-03-17 20:12:21.918 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:21.928 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:22.118 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:22.118 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 216 ms overall
17-03-17 20:12:22.298 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:12:22.298 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:12:22.338 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:22.338 -07 000000475 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:12:22.348 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:22.348 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:22.348 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:12:22.348 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-17 20:12:22.948 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.970374,
17-03-17 20:12:23.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:23.298 -07 000000475 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:12:23.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:23.308 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:23.328 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:23.328 -07 000000431 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:12:23.328 -07 000000431 INF: Y Motor: Moved to 63.2246 after 1649 ms (table move)
17-03-17 20:12:23.328 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139002 mm (DAC = 30365)
17-03-17 20:12:23.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.328 -07 000000627 INF: FPGA: Recv ZSGSRD 30924
17-03-17 20:12:23.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:12:23.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.338 -07 000000459 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:12:23.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:23.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.348 -07 000000438 INF: FPGA: Recv ZSGSRD 30924
17-03-17 20:12:23.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.358 -07 000000459 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:12:23.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.368 -07 000000627 INF: FPGA: Recv ZSGSRD 30932
17-03-17 20:12:23.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.378 -07 000000438 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:12:23.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.388 -07 000000502 INF: FPGA: Recv ZSGSRD 30928
17-03-17 20:12:23.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30921
17-03-17 20:12:23.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30925
17-03-17 20:12:23.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:23.418 -07 000000459 INF: FPGA: Recv ZSGSRD 30923
17-03-17 20:12:23.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.428 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:23.428 -07 000000475 INF: FPGA: Recv ZPIEZORD 26933
17-03-17 20:12:23.438 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -8.8 V.
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30926 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30926 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30921 (-138.2 uncal um), Max = 30934 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30926, posNoise = 8, negNoise = 5
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: After move to -0.139002, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: Settle wait time = 1651 ms, measure time = 105 ms (allowed 150 ms), total time = 1756 ms
17-03-17 20:12:23.438 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:23.488 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1808 ms
17-03-17 20:12:23.488 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:23.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:23.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:23.488 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:23.488 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:23.488 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:23.488 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:23.488 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:23.488 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:23.498 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:23.498 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:23.508 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:12:23.508 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:12:23.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:23.558 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:23.758 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:23.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:23.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:23.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 20:12:23.798 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:23.798 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:23.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 20:12:23.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:12:23.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:23.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:23.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:12:23.898 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:23.898 -07 000000382 INF: Autofocus start
17-03-17 20:12:23.898 -07 000000382 INF: MeasureProfile start
17-03-17 20:12:23.898 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:23.908 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:23.908 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:23.908 -07 000000382 INF: MeasureProfile done
17-03-17 20:12:23.908 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:23.908 -07 000000382 INF: Autofocus finished
17-03-17 20:12:24.108 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:24.108 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:12:24.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.138998536707234. ----------
17-03-17 20:12:24.118 -07 000000610 INF: Cycle	35	Tile	5	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:24.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28872, sync = True, waitForSettling = True)
17-03-17 20:12:24.118 -07 000000610 INF: Z Motor: Moving to -0.132168 mm, started at -0.138999 mm, distance = 6.83 um
17-03-17 20:12:24.118 -07 000000610 INF: FPGA: Xmit ZDACW 28872\n [Z Motor]
17-03-17 20:12:24.118 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:12:24.128 -07 000000610 INF: FPGA: 'ZDACW 28872' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:24.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:24.128 -07 000000431 INF: FPGA: Recv ZDACR 28872
17-03-17 20:12:24.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.288 -07 000000424 INF: FPGA: Recv ZSGSRD 29862
17-03-17 20:12:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29869
17-03-17 20:12:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.308 -07 000000459 INF: FPGA: Recv ZSGSRD 29857
17-03-17 20:12:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.318 -07 000000475 INF: FPGA: Recv ZSGSRD 29861
17-03-17 20:12:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.328 -07 000000459 INF: FPGA: Recv ZSGSRD 29863
17-03-17 20:12:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29866
17-03-17 20:12:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.348 -07 000000438 INF: FPGA: Recv ZSGSRD 29864
17-03-17 20:12:24.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.358 -07 000000502 INF: FPGA: Recv ZSGSRD 29863
17-03-17 20:12:24.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.368 -07 000000502 INF: FPGA: Recv ZSGSRD 29865
17-03-17 20:12:24.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:24.378 -07 000000627 INF: FPGA: Recv ZSGSRD 29864
17-03-17 20:12:24.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:24.388 -07 000000502 INF: FPGA: Recv ZPIEZORD 25551
17-03-17 20:12:24.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:24.398 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.5 V.
17-03-17 20:12:24.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29863 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29864 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29857 (-131.3 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:12:24.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29863, posNoise = 6, negNoise = 6
17-03-17 20:12:24.398 -07 000000610 INF: Z Motor: After move to -0.132168, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:24.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:12:24.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:24.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:24.398 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:24.398 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:24.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:24.398 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:24.398 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:24.398 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:24.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:24.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:24.398 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:24.398 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:24.408 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:24.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:24.408 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:24.408 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:24.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:24.408 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:24.418 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:12:24.418 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:24.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29049 150\n [Camera]
17-03-17 20:12:24.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:25.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:25.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:25.028 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:25.028 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:25.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 20:12:25.028 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:25.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:25.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:25.028 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:25.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 20:12:25.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29049 799
17-03-17 20:12:25.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:25.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:12:25.408 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:12:25.408 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:25.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:12:25.408 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:12:25.408 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:25.408 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:25.408 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:12:25.408 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:25.418 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:12:25.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:25.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:25.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:25.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:25.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:25.698 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:25.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 20:12:25.698 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:25.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:25.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:12:25.758 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:12:25.758 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:25.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29049 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:12:25.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:25.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132169599200542. ------
17-03-17 20:12:25.768 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:25.768 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13865 mm
17-03-17 20:12:25.768 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:25.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:25.768 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:12:25.768 -07 000000438 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 20:12:25.768 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30288, sync = True, waitForSettling = False)
17-03-17 20:12:25.768 -07 000000458 INF: Z Motor: Moving to -0.138650 mm, started at -0.132170 mm, distance = -6.48 um
17-03-17 20:12:25.778 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:25.778 -07 000000458 INF: FPGA: Xmit ZDACW 30288\n [Z Motor]
17-03-17 20:12:25.778 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:12:25.788 -07 000000458 INF: FPGA: 'ZDACW 30288' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:12:25.788 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:25.788 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:12:25.798 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:12:25.798 -07 000000438 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:25.798 -07 000000438 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:25.798 -07 000000438 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:12:25.798 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:25.808 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:25.808 -07 000000608 INF: FPGA: Recv ZDACR 30288
17-03-17 20:12:25.818 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:25.818 -07 000000458 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:12:25.818 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:25.998 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:25.998 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 20:12:26.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:12:26.098 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:12:26.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:26.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:12:26.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:12:26.108 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:26.108 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:26.108 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:26.108 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 20:12:26.118 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:12:26.198 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:12:26.198 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 20:12:26.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:26.238 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:12:26.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:12:26.238 -07 000000438 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:26.238 -07 000000438 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:12:26.238 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.838 mm, average velocity = 2.085 mm/sec
17-03-17 20:12:26.758 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:27.188 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:27.188 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:12:27.198 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:27.198 -07 000000438 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:27.208 -07 000000438 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:27.208 -07 000000438 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:27.208 -07 000000438 INF: Y Motor: Moved to 64.0571 after 1444 ms (table move)
17-03-17 20:12:27.218 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138650 mm (DAC = 30288)
17-03-17 20:12:27.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.218 -07 000000458 INF: FPGA: Recv ZSGSRD 30868
17-03-17 20:12:27.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:27.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.228 -07 000000438 INF: FPGA: Recv ZSGSRD 30869
17-03-17 20:12:27.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.238 -07 000000438 INF: FPGA: Recv ZSGSRD 30871
17-03-17 20:12:27.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30876
17-03-17 20:12:27.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.258 -07 000000438 INF: FPGA: Recv ZSGSRD 30879
17-03-17 20:12:27.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.268 -07 000000438 INF: FPGA: Recv ZSGSRD 30880
17-03-17 20:12:27.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.278 -07 000000424 INF: FPGA: Recv ZSGSRD 30879
17-03-17 20:12:27.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30877
17-03-17 20:12:27.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.298 -07 000000424 INF: FPGA: Recv ZSGSRD 30869
17-03-17 20:12:27.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:27.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30869
17-03-17 20:12:27.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.318 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:27.318 -07 000000623 INF: FPGA: Recv ZPIEZORD 26874
17-03-17 20:12:27.328 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -8.8 V.
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30874 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30874 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30868 (-137.8 uncal um), Max = 30880 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30874, posNoise = 6, negNoise = 6
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: After move to -0.138650, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-17 20:12:27.328 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:27.378 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:12:27.378 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:27.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:27.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:27.378 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:27.378 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:27.378 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:27.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:27.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:27.378 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:27.388 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:27.388 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:27.388 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:12:27.388 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:12:27.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:27.438 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:27.638 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:27.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:27.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:27.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:12:27.678 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:27.678 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:27.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 20:12:27.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:27.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:27.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:27.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:12:27.778 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:27.778 -07 000000458 INF: Autofocus start
17-03-17 20:12:27.778 -07 000000458 INF: MeasureProfile start
17-03-17 20:12:27.778 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:27.788 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:27.788 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:27.788 -07 000000458 INF: MeasureProfile done
17-03-17 20:12:27.788 -07 000000458 INF: X=6  Z correction [um]=0.004914018
17-03-17 20:12:27.788 -07 000000458 INF: Autofocus finished
17-03-17 20:12:27.988 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:27.988 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:12:27.998 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138664477675863. ----------
17-03-17 20:12:27.998 -07 000000610 INF: Cycle	35	Tile	6	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:27.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28802, sync = True, waitForSettling = True)
17-03-17 20:12:27.998 -07 000000610 INF: Z Motor: Moving to -0.131847 mm, started at -0.138664 mm, distance = 6.82 um
17-03-17 20:12:28.018 -07 000000610 INF: FPGA: Xmit ZDACW 28802\n [Z Motor]
17-03-17 20:12:28.018 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:12:28.028 -07 000000610 INF: FPGA: 'ZDACW 28802' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:12:28.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:28.048 -07 000000458 INF: FPGA: Recv ZDACR 28802
17-03-17 20:12:28.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:28.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:28.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.208 -07 000000382 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:12:28.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:12:28.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:12:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.238 -07 000000424 INF: FPGA: Recv ZSGSRD 29816
17-03-17 20:12:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:12:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.258 -07 000000424 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:12:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:12:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:12:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.288 -07 000000382 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:12:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:28.298 -07 000000424 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:12:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:28.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:28.318 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.981281,
17-03-17 20:12:28.318 -07 000000382 INF: FPGA: Recv ZPIEZORD 25513
17-03-17 20:12:28.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:12:28.328 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.4 V.
17-03-17 20:12:28.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29814 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29814 (-131.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29805 (-131.0 uncal um), Max = 29822 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:12:28.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29814, posNoise = 8, negNoise = 9
17-03-17 20:12:28.328 -07 000000610 INF: Z Motor: After move to -0.131847, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:28.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-17 20:12:28.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:28.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:28.328 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:28.328 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:28.328 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:28.328 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:28.328 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:28.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:28.328 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:28.328 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:28.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:28.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:28.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:28.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:28.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:28.338 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:28.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:12:28.348 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:12:28.348 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:12:28.348 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:12:28.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28979 150\n [Camera]
17-03-17 20:12:28.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:28.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:28.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:28.978 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:28.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:28.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:28.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:28.988 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:28.988 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:12:28.988 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:28.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:12:29.168 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 796
17-03-17 20:12:29.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:29.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:12:29.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:12:29.478 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 492 ms.
17-03-17 20:12:29.478 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:29.478 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 20:12:29.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:29.488 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:29.488 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:29.488 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:12:29.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 20:12:29.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146
17-03-17 20:12:29.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146
17-03-17 20:12:29.518 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:29.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146
17-03-17 20:12:29.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146
17-03-17 20:12:29.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:29.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:12:29.528 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:29.528 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:29.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2317258912, 0x0, 418435064) start.
17-03-17 20:12:29.708 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:29.708 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:29.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28979 150' command took 2 ms to send, 1334 ms to get response, and 1355 ms overall
17-03-17 20:12:29.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:29.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131854812805596. ------
17-03-17 20:12:29.718 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13846 mm
17-03-17 20:12:29.718 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:29.718 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:29.718 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:29.718 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:12:29.718 -07 000000623 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:12:29.718 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30248, sync = True, waitForSettling = False)
17-03-17 20:12:29.718 -07 000000382 INF: Z Motor: Moving to -0.138466 mm, started at -0.131855 mm, distance = -6.61 um
17-03-17 20:12:29.728 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:29.728 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:29.738 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:29.738 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:12:29.748 -07 000000382 INF: FPGA: Xmit ZDACW 30248\n [Z Motor]
17-03-17 20:12:29.748 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:12:29.748 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:29.748 -07 000000623 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:29.748 -07 000000623 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:12:29.748 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:12:29.758 -07 000000382 INF: FPGA: 'ZDACW 30248' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 20:12:29.758 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:29.758 -07 000000431 INF: FPGA: Recv ZDACR 30248
17-03-17 20:12:29.768 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:29.768 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:29.768 -07 000000382 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:12:29.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:12:29.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:12:29.918 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:29.918 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2317258912, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:12:29.918 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:12:29.918 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:29.918 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:29.918 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:12:29.918 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:29.928 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:29.928 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:29.928 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:12:30.138 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:12:30.138 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:12:30.178 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:30.178 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:12:30.188 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:12:30.188 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:30.188 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:12:30.188 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:12:31.138 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:31.138 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:12:31.148 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:31.148 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:31.168 -07 000000623 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:31.168 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:31.168 -07 000000623 INF: Y Motor: Moved to 64.8789 after 1447 ms (table move)
17-03-17 20:12:31.168 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138466 mm (DAC = 30248)
17-03-17 20:12:31.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.168 -07 000000429 INF: FPGA: Recv ZSGSRD 30844
17-03-17 20:12:31.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:12:31.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.178 -07 000000382 INF: FPGA: Recv ZSGSRD 30839
17-03-17 20:12:31.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.188 -07 000000429 INF: FPGA: Recv ZSGSRD 30842
17-03-17 20:12:31.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30848
17-03-17 20:12:31.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.208 -07 000000569 INF: FPGA: Recv ZSGSRD 30852
17-03-17 20:12:31.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.218 -07 000000458 INF: FPGA: Recv ZSGSRD 30848
17-03-17 20:12:31.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30847
17-03-17 20:12:31.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.238 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30841
17-03-17 20:12:31.248 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.248 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30837
17-03-17 20:12:31.258 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.258 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:31.258 -07 000000462 INF: FPGA: Recv ZSGSRD 30840
17-03-17 20:12:31.268 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.268 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:31.268 -07 000000429 INF: FPGA: Recv ZPIEZORD 26853
17-03-17 20:12:31.278 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -8.8 V.
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30843 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30837 (-137.6 uncal um), Max = 30852 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 8, negNoise = 7
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: After move to -0.138466, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:12:31.278 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:31.328 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 20:12:31.328 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:31.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:31.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:31.328 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:31.328 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:31.328 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:31.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:31.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:31.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:31.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:31.338 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:31.348 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:12:31.348 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:12:31.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:31.388 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:31.588 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:31.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:31.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:31.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 20:12:31.628 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:31.628 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:31.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:12:31.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:12:31.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:31.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:31.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:12:31.728 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:31.728 -07 000000569 INF: Autofocus start
17-03-17 20:12:31.728 -07 000000569 INF: MeasureProfile start
17-03-17 20:12:31.728 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:31.738 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:31.738 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:31.738 -07 000000569 INF: MeasureProfile done
17-03-17 20:12:31.738 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:12:31.738 -07 000000569 INF: Autofocus finished
17-03-17 20:12:31.758 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:31.938 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:31.938 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:31.938 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13847175131161. ----------
17-03-17 20:12:31.938 -07 000000610 INF: Cycle	35	Tile	7	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:31.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28772, sync = True, waitForSettling = True)
17-03-17 20:12:31.948 -07 000000610 INF: Z Motor: Moving to -0.131710 mm, started at -0.138472 mm, distance = 6.76 um
17-03-17 20:12:31.948 -07 000000610 INF: FPGA: Xmit ZDACW 28772\n [Z Motor]
17-03-17 20:12:31.948 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:12:31.958 -07 000000610 INF: FPGA: 'ZDACW 28772' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:12:31.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:31.958 -07 000000462 INF: FPGA: Recv ZDACR 28772
17-03-17 20:12:31.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:31.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:12:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29793
17-03-17 20:12:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29793
17-03-17 20:12:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.148 -07 000000569 INF: FPGA: Recv ZSGSRD 29794
17-03-17 20:12:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29787
17-03-17 20:12:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.168 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-17 20:12:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29794
17-03-17 20:12:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.188 -07 000000569 INF: FPGA: Recv ZSGSRD 29791
17-03-17 20:12:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29791
17-03-17 20:12:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:32.208 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 20:12:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:32.218 -07 000000462 INF: FPGA: Recv ZPIEZORD 25495
17-03-17 20:12:32.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:32.228 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.4 V.
17-03-17 20:12:32.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29791 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29787 (-130.9 uncal um), Max = 29794 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:32.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29791, posNoise = 3, negNoise = 4
17-03-17 20:12:32.228 -07 000000610 INF: Z Motor: After move to -0.131710, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:32.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:12:32.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:32.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:32.228 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:32.228 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:32.228 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:32.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:32.228 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:32.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:12:32.228 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:32.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:32.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:32.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:32.238 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:32.238 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:32.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:32.238 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:32.248 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:32.248 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:12:32.248 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:12:32.248 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:32.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28948 150\n [Camera]
17-03-17 20:12:32.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:32.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:32.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:32.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:32.858 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:32.858 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352681176, 0x0, 391868352) start.
17-03-17 20:12:32.858 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:32.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:32.858 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:32.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:32.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:12:33.048 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28948 796
17-03-17 20:12:33.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:33.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:12:33.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352681176, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:12:33.238 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:12:33.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:33.238 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:12:33.238 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:33.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:33.238 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:12:33.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:33.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:12:33.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:33.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:33.398 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:33.398 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:33.398 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:12:33.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:33.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:33.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:33.398 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:33.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:12:33.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:12:33.588 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:33.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28948 150' command took 4 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-17 20:12:33.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:33.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131707055926336. ------
17-03-17 20:12:33.598 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:33.598 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13835 mm
17-03-17 20:12:33.598 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:33.598 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:33.598 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:12:33.598 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:12:33.598 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30222, sync = True, waitForSettling = False)
17-03-17 20:12:33.598 -07 000000486 INF: Z Motor: Moving to -0.138347 mm, started at -0.131707 mm, distance = -6.64 um
17-03-17 20:12:33.608 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:33.608 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:33.608 -07 000000429 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:12:33.618 -07 000000486 INF: FPGA: Xmit ZDACW 30222\n [Z Motor]
17-03-17 20:12:33.618 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:12:33.618 -07 000000459 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:33.618 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:12:33.618 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:33.618 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:12:33.628 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:33.628 -07 000000486 INF: FPGA: 'ZDACW 30222' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:12:33.638 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:33.648 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:33.648 -07 000000429 INF: FPGA: Recv ZDACR 30222
17-03-17 20:12:33.658 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:33.658 -07 000000486 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:12:33.698 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.999021,
17-03-17 20:12:33.798 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:12:33.798 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:12:33.798 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:33.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:12:33.798 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:12:33.798 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:33.798 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:33.808 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:12:33.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:12:33.808 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:12:33.828 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:33.828 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:12:34.008 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:12:34.008 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 393 ms overall
17-03-17 20:12:34.048 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:34.048 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:12:34.058 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:34.058 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:34.058 -07 000000459 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:12:34.058 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 20:12:35.008 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:35.008 -07 000000429 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:12:35.018 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:35.018 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:35.038 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:35.038 -07 000000459 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:35.038 -07 000000459 INF: Y Motor: Moved to 65.7144 after 1436 ms (table move)
17-03-17 20:12:35.038 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138347 mm (DAC = 30222)
17-03-17 20:12:35.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30834
17-03-17 20:12:35.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:12:35.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30830
17-03-17 20:12:35.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:12:35.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.058 -07 000000623 INF: FPGA: Recv ZSGSRD 30826
17-03-17 20:12:35.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.068 -07 000000623 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:12:35.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30830
17-03-17 20:12:35.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.088 -07 000000569 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:12:35.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.098 -07 000000623 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:12:35.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.108 -07 000000623 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:12:35.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.118 -07 000000459 INF: FPGA: Recv ZSGSRD 30815
17-03-17 20:12:35.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.128 -07 000000459 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:12:35.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.138 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:35.138 -07 000000627 INF: FPGA: Recv ZPIEZORD 26793
17-03-17 20:12:35.148 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.9 V.
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30827 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30828 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30815 (-137.5 uncal um), Max = 30834 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30827, posNoise = 7, negNoise = 12
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: After move to -0.138347, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: Settle wait time = 1439 ms, measure time = 102 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:12:35.148 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:35.198 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:12:35.198 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:35.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:35.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:35.198 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:35.198 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:35.198 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:35.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:35.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:35.198 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:35.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:35.208 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:35.218 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:12:35.218 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:12:35.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:35.268 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:35.468 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:35.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:35.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:35.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404978504, 0x0, 559484976) start.
17-03-17 20:12:35.508 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:35.508 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:35.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 20:12:35.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404978504, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:35.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:35.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:35.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:12:35.608 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:35.608 -07 000000459 INF: Autofocus start
17-03-17 20:12:35.608 -07 000000459 INF: MeasureProfile start
17-03-17 20:12:35.608 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:35.618 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:35.618 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:35.618 -07 000000459 INF: MeasureProfile done
17-03-17 20:12:35.618 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:12:35.618 -07 000000459 INF: Autofocus finished
17-03-17 20:12:35.818 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:35.818 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:35.818 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.1383625397052. ----------
17-03-17 20:12:35.818 -07 000000610 INF: Cycle	35	Tile	8	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:35.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28717, sync = True, waitForSettling = True)
17-03-17 20:12:35.828 -07 000000610 INF: Z Motor: Moving to -0.131458 mm, started at -0.138363 mm, distance = 6.90 um
17-03-17 20:12:35.828 -07 000000610 INF: FPGA: Xmit ZDACW 28717\n [Z Motor]
17-03-17 20:12:35.828 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 20:12:35.838 -07 000000610 INF: FPGA: 'ZDACW 28717' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:35.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:35.838 -07 000000382 INF: FPGA: Recv ZDACR 28717
17-03-17 20:12:35.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:35.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:35.998 -07 000000382 INF: FPGA: Recv ZSGSRD 29757
17-03-17 20:12:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:36.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:12:36.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.018 -07 000000623 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:12:36.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29749
17-03-17 20:12:36.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29753
17-03-17 20:12:36.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:12:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.058 -07 000000623 INF: FPGA: Recv ZSGSRD 29750
17-03-17 20:12:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.068 -07 000000569 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:12:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:12:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:36.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:12:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:36.098 -07 000000429 INF: FPGA: Recv ZPIEZORD 25394
17-03-17 20:12:36.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:36.108 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.6 V.
17-03-17 20:12:36.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:36.108 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 4, negNoise = 4
17-03-17 20:12:36.108 -07 000000610 INF: Z Motor: After move to -0.131458, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:36.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:12:36.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:36.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:36.108 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:36.108 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:36.108 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:36.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:36.108 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:36.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:36.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:36.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:36.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:12:36.108 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:36.118 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:36.118 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:36.118 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:12:36.118 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:36.118 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:36.118 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:12:36.128 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:12:36.128 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:36.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28894 150\n [Camera]
17-03-17 20:12:36.328 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:36.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:36.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:36.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:36.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:36.738 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:36.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:36.738 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:36.738 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:36.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:12:36.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:12:36.758 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:36.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28894 796
17-03-17 20:12:37.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:37.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:12:37.118 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:12:37.118 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:37.118 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:37.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:12:37.128 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:12:37.128 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:37.128 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:12:37.128 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:37.128 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:12:37.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:37.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:37.278 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:37.278 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:37.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:12:37.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:37.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:37.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:37.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:37.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:12:37.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:37.468 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:37.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28894 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall
17-03-17 20:12:37.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:37.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131462935864949. ------
17-03-17 20:12:37.478 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13780 mm
17-03-17 20:12:37.478 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:37.478 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:37.478 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:12:37.478 -07 000000486 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:12:37.478 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30103, sync = True, waitForSettling = False)
17-03-17 20:12:37.478 -07 000000608 INF: Z Motor: Moving to -0.137803 mm, started at -0.131463 mm, distance = -6.34 um
17-03-17 20:12:37.488 -07 000000608 INF: FPGA: Xmit ZDACW 30103\n [Z Motor]
17-03-17 20:12:37.498 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:37.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:12:37.688 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:12:37.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:37.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:12:37.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:12:37.688 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:37.688 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:37.688 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:12:37.688 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:12:37.698 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:12:37.698 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:37.698 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:12:37.698 -07 000000623 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:12:37.698 -07 000000608 INF: FPGA: 'ZDACW 30103' command took 0 ms to send, 208 ms to get response, and 219 ms overall
17-03-17 20:12:37.698 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 223 ms overall
17-03-17 20:12:37.698 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 220 ms overall
17-03-17 20:12:37.698 -07 000000486 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:37.698 -07 000000486 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:37.698 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:12:37.708 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:37.708 -07 000000429 INF: FPGA: Recv ZDACR 30103
17-03-17 20:12:37.718 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:37.718 -07 000000608 INF: Z Motor: MoveAbsStepped took 231 ms (did NOT wait for settling yet))
17-03-17 20:12:37.718 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:37.728 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:37.918 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:37.918 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 20:12:38.098 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:12:38.098 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 20:12:38.138 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:38.138 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:12:38.148 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:38.148 -07 000000486 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:38.148 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:12:38.148 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 20:12:39.078 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.008536,
17-03-17 20:12:39.098 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:39.098 -07 000000502 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:12:39.108 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.108 -07 000000486 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:39.128 -07 000000486 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:39.128 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:12:39.128 -07 000000486 INF: Y Motor: Moved to 66.5396 after 1645 ms (table move)
17-03-17 20:12:39.128 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137803 mm (DAC = 30103)
17-03-17 20:12:39.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.138 -07 000000608 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:12:39.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:39.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.148 -07 000000608 INF: FPGA: Recv ZSGSRD 30743
17-03-17 20:12:39.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.158 -07 000000608 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:12:39.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.168 -07 000000608 INF: FPGA: Recv ZSGSRD 30747
17-03-17 20:12:39.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.178 -07 000000608 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:12:39.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30740
17-03-17 20:12:39.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.198 -07 000000486 INF: FPGA: Recv ZSGSRD 30738
17-03-17 20:12:39.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.208 -07 000000475 INF: FPGA: Recv ZSGSRD 30739
17-03-17 20:12:39.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.218 -07 000000608 INF: FPGA: Recv ZSGSRD 30742
17-03-17 20:12:39.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:39.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:12:39.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.238 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:39.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 26703
17-03-17 20:12:39.248 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.9 V.
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30743 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30744 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30738 (-137.0 uncal um), Max = 30747 (-137.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30743, posNoise = 4, negNoise = 5
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: After move to -0.137803, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: Settle wait time = 1650 ms, measure time = 111 ms (allowed 150 ms), total time = 1761 ms
17-03-17 20:12:39.248 -07 000000627 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:39.288 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms
17-03-17 20:12:39.288 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:39.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:39.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:39.288 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:39.288 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:39.288 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:39.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:39.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:39.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:39.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:39.298 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:39.308 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:12:39.308 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:12:39.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:39.348 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:39.548 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:39.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:39.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:39.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 20:12:39.588 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:39.588 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:39.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:12:39.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:12:39.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:39.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:39.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:12:39.788 -07 000000569 INF: Autofocus start
17-03-17 20:12:39.788 -07 000000569 INF: MeasureProfile start
17-03-17 20:12:39.788 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:39.798 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:39.798 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:12:39.798 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:39.808 -07 000000569 INF: MeasureProfile done
17-03-17 20:12:39.808 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:39.808 -07 000000569 INF: Autofocus finished
17-03-17 20:12:39.998 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:39.998 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:12:39.998 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137822905885292. ----------
17-03-17 20:12:40.008 -07 000000610 INF: Cycle	35	Tile	9	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:40.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28610, sync = True, waitForSettling = True)
17-03-17 20:12:40.008 -07 000000610 INF: Z Motor: Moving to -0.130968 mm, started at -0.137823 mm, distance = 6.85 um
17-03-17 20:12:40.008 -07 000000610 INF: FPGA: Xmit ZDACW 28610\n [Z Motor]
17-03-17 20:12:40.008 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:12:40.018 -07 000000610 INF: FPGA: 'ZDACW 28610' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:40.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:40.018 -07 000000458 INF: FPGA: Recv ZDACR 28610
17-03-17 20:12:40.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.178 -07 000000569 INF: FPGA: Recv ZSGSRD 29678
17-03-17 20:12:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:12:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29674
17-03-17 20:12:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.208 -07 000000458 INF: FPGA: Recv ZSGSRD 29670
17-03-17 20:12:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29673
17-03-17 20:12:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.228 -07 000000486 INF: FPGA: Recv ZSGSRD 29675
17-03-17 20:12:40.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.238 -07 000000569 INF: FPGA: Recv ZSGSRD 29673
17-03-17 20:12:40.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:12:40.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:12:40.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:40.268 -07 000000458 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:12:40.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:40.278 -07 000000569 INF: FPGA: Recv ZPIEZORD 25314
17-03-17 20:12:40.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:40.288 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.6 V.
17-03-17 20:12:40.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29683 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:12:40.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 6, negNoise = 7
17-03-17 20:12:40.288 -07 000000610 INF: Z Motor: After move to -0.130968, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:40.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:12:40.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:40.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:40.288 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:40.288 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:40.288 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:40.288 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:40.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:40.288 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:40.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:40.288 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:40.288 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:40.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:40.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:40.298 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:40.298 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:40.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:40.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:40.308 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:40.308 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:40.308 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:40.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28787 150\n [Camera]
17-03-17 20:12:40.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:40.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:12:40.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:12:40.918 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:40.918 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:40.918 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 20:12:40.928 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:12:40.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:12:40.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:40.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:40.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 20:12:41.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28787 796
17-03-17 20:12:41.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:41.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:12:41.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:12:41.298 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:41.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:12:41.298 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:12:41.298 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:41.308 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:41.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:12:41.308 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:12:41.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:12:41.458 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:41.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:41.458 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:41.458 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:41.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 20:12:41.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:41.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:41.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:41.458 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:41.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 20:12:41.648 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:41.648 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:41.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28787 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall
17-03-17 20:12:41.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:41.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130974695742175. ------
17-03-17 20:12:41.658 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13783 mm
17-03-17 20:12:41.658 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:41.658 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:41.658 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:41.658 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:12:41.658 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:12:41.658 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30108, sync = True, waitForSettling = False)
17-03-17 20:12:41.658 -07 000000569 INF: Z Motor: Moving to -0.137826 mm, started at -0.130975 mm, distance = -6.85 um
17-03-17 20:12:41.668 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:41.668 -07 000000569 INF: FPGA: Xmit ZDACW 30108\n [Z Motor]
17-03-17 20:12:41.678 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:41.688 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:41.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:12:41.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:12:41.848 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:41.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:12:41.848 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:12:41.848 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:41.858 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:41.858 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:12:41.858 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:12:41.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:12:41.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:12:41.868 -07 000000476 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:12:41.868 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:41.868 -07 000000569 INF: FPGA: 'ZDACW 30108' command took 0 ms to send, 198 ms to get response, and 211 ms overall
17-03-17 20:12:41.868 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:41.868 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 188 ms to get response, and 211 ms overall
17-03-17 20:12:41.868 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:41.868 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:41.868 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:12:41.878 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:41.878 -07 000000431 INF: FPGA: Recv ZDACR 30108
17-03-17 20:12:41.878 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:12:41.878 -07 000000569 INF: Z Motor: MoveAbsStepped took 214 ms (did NOT wait for settling yet))
17-03-17 20:12:41.888 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:41.888 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:12:42.248 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:12:42.248 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:12:42.288 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:42.288 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:12:42.298 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:42.298 -07 000000424 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:42.298 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:12:42.298 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-17 20:12:43.248 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:43.248 -07 000000431 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:12:43.258 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.258 -07 000000424 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:43.278 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:43.278 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:12:43.278 -07 000000424 INF: Y Motor: Moved to 67.3726 after 1617 ms (table move)
17-03-17 20:12:43.278 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137826 mm (DAC = 30108)
17-03-17 20:12:43.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30746
17-03-17 20:12:43.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:12:43.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.288 -07 000000569 INF: FPGA: Recv ZSGSRD 30746
17-03-17 20:12:43.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:12:43.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.308 -07 000000424 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:12:43.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.318 -07 000000569 INF: FPGA: Recv ZSGSRD 30736
17-03-17 20:12:43.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.328 -07 000000424 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:12:43.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.338 -07 000000476 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:12:43.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.348 -07 000000424 INF: FPGA: Recv ZSGSRD 30739
17-03-17 20:12:43.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30735
17-03-17 20:12:43.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:43.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30748
17-03-17 20:12:43.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.378 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:43.378 -07 000000502 INF: FPGA: Recv ZPIEZORD 26754
17-03-17 20:12:43.388 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -8.8 V.
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30743 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30744 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30735 (-137.0 uncal um), Max = 30748 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30743, posNoise = 5, negNoise = 8
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: After move to -0.137826, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: Settle wait time = 1620 ms, measure time = 103 ms (allowed 150 ms), total time = 1723 ms
17-03-17 20:12:43.388 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:43.438 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1777 ms
17-03-17 20:12:43.438 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:43.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:43.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:43.438 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:43.438 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:43.438 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:43.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:43.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:43.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:43.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:43.448 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:43.458 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:12:43.458 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:12:43.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:43.508 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:43.708 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:43.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:43.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:43.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 20:12:43.748 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:43.748 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:43.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:12:43.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:43.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:12:43.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:43.848 -07 000000476 INF: Autofocus start
17-03-17 20:12:43.848 -07 000000476 INF: MeasureProfile start
17-03-17 20:12:43.848 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:43.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:43.858 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:43.858 -07 000000476 INF: MeasureProfile done
17-03-17 20:12:43.858 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:43.858 -07 000000476 INF: Autofocus finished
17-03-17 20:12:44.058 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:44.058 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 20:12:44.058 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137822905885292. ----------
17-03-17 20:12:44.058 -07 000000610 INF: Cycle	35	Tile	10	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:44.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28616, sync = True, waitForSettling = True)
17-03-17 20:12:44.068 -07 000000610 INF: Z Motor: Moving to -0.130996 mm, started at -0.137823 mm, distance = 6.83 um
17-03-17 20:12:44.068 -07 000000610 INF: FPGA: Xmit ZDACW 28616\n [Z Motor]
17-03-17 20:12:44.068 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:12:44.078 -07 000000610 INF: FPGA: 'ZDACW 28616' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:44.078 -07 000000502 INF: FPGA: Recv ZDACR 28616
17-03-17 20:12:44.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.238 -07 000000431 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:12:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.248 -07 000000502 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:12:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.258 -07 000000424 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:12:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:12:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29678
17-03-17 20:12:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.288 -07 000000569 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:12:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.298 -07 000000438 INF: FPGA: Recv ZSGSRD 29688
17-03-17 20:12:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.308 -07 000000502 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:12:44.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.318 -07 000000623 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:12:44.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:44.328 -07 000000486 INF: FPGA: Recv ZSGSRD 29681
17-03-17 20:12:44.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:44.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 25387
17-03-17 20:12:44.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:44.348 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.4 V.
17-03-17 20:12:44.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29678 (-130.2 uncal um), Max = 29688 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:44.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 6, negNoise = 4
17-03-17 20:12:44.348 -07 000000610 INF: Z Motor: After move to -0.130996, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:44.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:12:44.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:44.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:44.348 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:44.348 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:44.348 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:44.348 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:44.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:44.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:44.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:44.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:44.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:44.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:44.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:12:44.358 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:44.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:44.358 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:44.358 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:44.358 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:44.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:12:44.368 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:12:44.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28792 150\n [Camera]
17-03-17 20:12:44.448 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.973092,
17-03-17 20:12:44.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:44.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:44.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:44.978 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:44.978 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:44.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 20:12:44.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:44.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:44.978 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:44.978 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:44.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 20:12:45.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28792 796
17-03-17 20:12:45.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:45.358 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:12:45.358 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:12:45.358 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:45.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:12:45.358 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:12:45.358 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:45.368 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:45.368 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:45.368 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:12:45.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:12:45.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:12:45.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:12:45.518 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:45.668 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:12:45.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:12:45.668 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:45.668 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:45.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 20:12:45.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:45.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:12:45.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:12:45.708 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:45.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28792 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-17 20:12:45.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:45.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131006816802884. ------
17-03-17 20:12:45.718 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:45.718 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13744 mm
17-03-17 20:12:45.718 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:45.718 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:12:45.718 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 20:12:45.718 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30023, sync = True, waitForSettling = False)
17-03-17 20:12:45.718 -07 000000429 INF: Z Motor: Moving to -0.137436 mm, started at -0.131007 mm, distance = -6.43 um
17-03-17 20:12:45.718 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:45.728 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:45.728 -07 000000429 INF: FPGA: Xmit ZDACW 30023\n [Z Motor]
17-03-17 20:12:45.728 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:12:45.738 -07 000000429 INF: FPGA: 'ZDACW 30023' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:12:45.738 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:45.738 -07 000000623 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:12:45.748 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:45.748 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:12:45.748 -07 000000458 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:45.748 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:45.748 -07 000000458 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:12:45.758 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:45.758 -07 000000382 INF: FPGA: Recv ZDACR 30023
17-03-17 20:12:45.768 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:45.768 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:45.768 -07 000000429 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:12:45.948 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:45.948 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:12:46.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:12:46.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:12:46.058 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:46.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:46.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:12:46.058 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:12:46.058 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:46.068 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:46.068 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 544 ms.
17-03-17 20:12:46.068 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:12:46.138 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:12:46.138 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:12:46.178 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:46.178 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:12:46.188 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:46.188 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:46.188 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:12:46.188 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 20:12:46.758 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:47.138 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:47.138 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:12:47.148 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:47.148 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:47.168 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:47.168 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:47.168 -07 000000458 INF: Y Motor: Moved to 68.2051 after 1442 ms (table move)
17-03-17 20:12:47.168 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137436 mm (DAC = 30023)
17-03-17 20:12:47.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.168 -07 000000431 INF: FPGA: Recv ZSGSRD 30687
17-03-17 20:12:47.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:47.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30683
17-03-17 20:12:47.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:12:47.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.198 -07 000000569 INF: FPGA: Recv ZSGSRD 30692
17-03-17 20:12:47.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.208 -07 000000459 INF: FPGA: Recv ZSGSRD 30690
17-03-17 20:12:47.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30677
17-03-17 20:12:47.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:12:47.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.238 -07 000000438 INF: FPGA: Recv ZSGSRD 30678
17-03-17 20:12:47.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30685
17-03-17 20:12:47.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.258 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:47.258 -07 000000438 INF: FPGA: Recv ZSGSRD 30683
17-03-17 20:12:47.268 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.268 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:47.268 -07 000000458 INF: FPGA: Recv ZPIEZORD 26674
17-03-17 20:12:47.278 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.8 V.
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30684 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30683 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30677 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30684, posNoise = 8, negNoise = 7
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: After move to -0.137436, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:12:47.278 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:47.328 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:12:47.328 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:47.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:47.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:47.328 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:47.328 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:47.328 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:47.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:47.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:12:47.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:47.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:47.338 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:47.348 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:12:47.348 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:12:47.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:47.398 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:47.598 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:47.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:47.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:47.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) start.
17-03-17 20:12:47.638 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:47.638 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:47.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:12:47.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:12:47.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:47.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:47.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:12:47.738 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:47.738 -07 000000431 INF: Autofocus start
17-03-17 20:12:47.738 -07 000000431 INF: MeasureProfile start
17-03-17 20:12:47.738 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:47.748 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:47.748 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:47.748 -07 000000431 INF: MeasureProfile done
17-03-17 20:12:47.748 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:47.748 -07 000000431 INF: Autofocus finished
17-03-17 20:12:47.948 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:47.948 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:47.958 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137443877368928. ----------
17-03-17 20:12:47.958 -07 000000610 INF: Cycle	35	Tile	11	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:47.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28531, sync = True, waitForSettling = True)
17-03-17 20:12:47.958 -07 000000610 INF: Z Motor: Moving to -0.130607 mm, started at -0.137444 mm, distance = 6.84 um
17-03-17 20:12:47.958 -07 000000610 INF: FPGA: Xmit ZDACW 28531\n [Z Motor]
17-03-17 20:12:47.958 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:12:47.968 -07 000000610 INF: FPGA: 'ZDACW 28531' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:47.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:47.968 -07 000000431 INF: FPGA: Recv ZDACR 28531
17-03-17 20:12:47.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:47.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:12:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:48.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.138 -07 000000431 INF: FPGA: Recv ZSGSRD 29625
17-03-17 20:12:48.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:12:48.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:12:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.168 -07 000000429 INF: FPGA: Recv ZSGSRD 29625
17-03-17 20:12:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29618
17-03-17 20:12:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.188 -07 000000551 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:12:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.198 -07 000000431 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:12:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.208 -07 000000429 INF: FPGA: Recv ZSGSRD 29622
17-03-17 20:12:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:48.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:12:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:48.228 -07 000000429 INF: FPGA: Recv ZPIEZORD 25287
17-03-17 20:12:48.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:48.238 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.5 V.
17-03-17 20:12:48.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29620 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29618 (-129.8 uncal um), Max = 29626 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:12:48.238 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 4, negNoise = 4
17-03-17 20:12:48.238 -07 000000610 INF: Z Motor: After move to -0.130607, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:48.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:12:48.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:48.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:48.238 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:48.238 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:48.238 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:48.238 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:48.238 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:48.238 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:48.238 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:48.238 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:48.238 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:12:48.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:48.248 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:48.248 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:48.248 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:48.248 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:48.258 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:48.258 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:48.258 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:48.258 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:48.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28708 150\n [Camera]
17-03-17 20:12:48.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:48.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:48.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:48.868 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:48.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:48.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:48.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:48.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:48.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 20:12:48.878 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:48.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) start.
17-03-17 20:12:49.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28708 796
17-03-17 20:12:49.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:49.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:12:49.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:12:49.248 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:49.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:12:49.248 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:12:49.248 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:49.248 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:49.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:49.258 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:12:49.258 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:12:49.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:49.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:49.408 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:49.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:49.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:49.408 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:49.418 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:49.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:12:49.418 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:49.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:12:49.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:49.598 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:49.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28708 150' command took 2 ms to send, 1335 ms to get response, and 1343 ms overall
17-03-17 20:12:49.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:49.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130621364074378. ------
17-03-17 20:12:49.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:49.608 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13728 mm
17-03-17 20:12:49.608 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:49.608 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:49.608 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29988, sync = True, waitForSettling = False)
17-03-17 20:12:49.608 -07 000000438 INF: Z Motor: Moving to -0.137276 mm, started at -0.130621 mm, distance = -6.65 um
17-03-17 20:12:49.608 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:12:49.608 -07 000000429 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:12:49.618 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:49.618 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:49.618 -07 000000551 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:12:49.628 -07 000000438 INF: FPGA: Xmit ZDACW 29988\n [Z Motor]
17-03-17 20:12:49.628 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:49.628 -07 000000429 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:49.628 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:12:49.628 -07 000000429 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:49.628 -07 000000429 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:12:49.638 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:49.638 -07 000000438 INF: FPGA: 'ZDACW 29988' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:12:49.648 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:49.658 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:49.658 -07 000000551 INF: FPGA: Recv ZDACR 29988
17-03-17 20:12:49.668 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:12:49.668 -07 000000438 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:12:49.798 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:12:49.798 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:12:49.798 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:49.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:12:49.798 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:12:49.798 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:49.808 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.985358,
17-03-17 20:12:49.808 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:49.808 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:49.808 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:12:49.818 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:12:49.838 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:49.838 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 20:12:50.018 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:12:50.018 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:12:50.058 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:50.058 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:12:50.068 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:50.068 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:50.068 -07 000000429 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:12:50.068 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 20:12:51.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:51.018 -07 000000475 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:12:51.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:51.028 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:51.048 -07 000000429 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:51.048 -07 000000429 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:51.048 -07 000000429 INF: Y Motor: Moved to 69.0273 after 1432 ms (table move)
17-03-17 20:12:51.048 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137276 mm (DAC = 29988)
17-03-17 20:12:51.048 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30659
17-03-17 20:12:51.058 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:51.058 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.058 -07 000000431 INF: FPGA: Recv ZSGSRD 30655
17-03-17 20:12:51.068 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30655
17-03-17 20:12:51.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.078 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.078 -07 000000438 INF: FPGA: Recv ZSGSRD 30663
17-03-17 20:12:51.088 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.088 -07 000000429 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:12:51.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.098 -07 000000475 INF: FPGA: Recv ZSGSRD 30660
17-03-17 20:12:51.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.108 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.108 -07 000000438 INF: FPGA: Recv ZSGSRD 30663
17-03-17 20:12:51.118 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.118 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.118 -07 000000382 INF: FPGA: Recv ZSGSRD 30655
17-03-17 20:12:51.128 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.128 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30657
17-03-17 20:12:51.138 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.138 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:51.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30661
17-03-17 20:12:51.148 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.148 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:51.148 -07 000000476 INF: FPGA: Recv ZPIEZORD 26674
17-03-17 20:12:51.158 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -8.8 V.
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30660 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30660 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30655 (-136.5 uncal um), Max = 30667 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30660, posNoise = 7, negNoise = 5
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: After move to -0.137276, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:12:51.158 -07 000000458 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:51.208 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:12:51.208 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:51.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:51.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:51.208 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:51.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:51.208 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:51.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:51.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:12:51.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:51.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:51.218 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:51.228 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:12:51.228 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:12:51.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:51.278 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:51.478 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:51.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:51.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:51.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2835582624, 0x0, 559484976) start.
17-03-17 20:12:51.518 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:51.518 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:51.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:12:51.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2835582624, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:12:51.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:51.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:51.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 20:12:51.618 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:51.618 -07 000000551 INF: Autofocus start
17-03-17 20:12:51.618 -07 000000551 INF: MeasureProfile start
17-03-17 20:12:51.618 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:51.628 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:51.628 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:51.628 -07 000000551 INF: MeasureProfile done
17-03-17 20:12:51.628 -07 000000551 INF: X=12  Z correction [um]=0.03377635
17-03-17 20:12:51.628 -07 000000551 INF: Autofocus finished
17-03-17 20:12:51.758 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:51.828 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:51.828 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:12:51.828 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137289696277526. ----------
17-03-17 20:12:51.838 -07 000000610 INF: Cycle	35	Tile	12	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:51.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28508, sync = True, waitForSettling = True)
17-03-17 20:12:51.838 -07 000000610 INF: Z Motor: Moving to -0.130501 mm, started at -0.137290 mm, distance = 6.79 um
17-03-17 20:12:51.838 -07 000000610 INF: FPGA: Xmit ZDACW 28508\n [Z Motor]
17-03-17 20:12:51.838 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:12:51.848 -07 000000610 INF: FPGA: 'ZDACW 28508' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:51.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:51.848 -07 000000576 INF: FPGA: Recv ZDACR 28508
17-03-17 20:12:51.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:51.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:52.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:12:52.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29602
17-03-17 20:12:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.028 -07 000000458 INF: FPGA: Recv ZSGSRD 29603
17-03-17 20:12:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.038 -07 000000431 INF: FPGA: Recv ZSGSRD 29605
17-03-17 20:12:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.048 -07 000000458 INF: FPGA: Recv ZSGSRD 29601
17-03-17 20:12:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29606
17-03-17 20:12:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29603
17-03-17 20:12:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29608
17-03-17 20:12:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29605
17-03-17 20:12:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:52.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:12:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:52.108 -07 000000541 INF: FPGA: Recv ZPIEZORD 25308
17-03-17 20:12:52.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:52.118 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.4 V.
17-03-17 20:12:52.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29601 (-129.7 uncal um), Max = 29608 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:12:52.118 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 4, negNoise = 3
17-03-17 20:12:52.118 -07 000000610 INF: Z Motor: After move to -0.130501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:52.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:12:52.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:52.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:52.118 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:52.128 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:52.128 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:52.128 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:52.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:52.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:52.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:52.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:52.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:12:52.128 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:52.128 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:12:52.128 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:52.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:52.128 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:52.138 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:52.138 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:12:52.138 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:12:52.138 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:12:52.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28684 150\n [Camera]
17-03-17 20:12:52.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:52.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:52.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:52.748 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:52.748 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:52.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2237544832, 0x0, 391868352) start.
17-03-17 20:12:52.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:52.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:52.758 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:52.758 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:52.758 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:12:52.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28684 796
17-03-17 20:12:53.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:53.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2237544832, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:12:53.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:12:53.138 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:53.138 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:12:53.138 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:12:53.138 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:53.138 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:12:53.138 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:12:53.138 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:12:53.148 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:12:53.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:53.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:53.298 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:53.298 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:53.298 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:12:53.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:53.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:53.298 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:53.298 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:53.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:12:53.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:53.488 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:53.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28684 150' command took 2 ms to send, 1341 ms to get response, and 1343 ms overall
17-03-17 20:12:53.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:53.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130505728255826. ------
17-03-17 20:12:53.488 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:53.488 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13696 mm
17-03-17 20:12:53.488 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:53.488 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:12:53.488 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:12:53.488 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29920, sync = True, waitForSettling = False)
17-03-17 20:12:53.488 -07 000000429 INF: Z Motor: Moving to -0.136965 mm, started at -0.130506 mm, distance = -6.46 um
17-03-17 20:12:53.498 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:53.508 -07 000000429 INF: FPGA: Xmit ZDACW 29920\n [Z Motor]
17-03-17 20:12:53.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:12:53.678 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:12:53.678 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:53.678 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:12:53.678 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:12:53.678 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:53.688 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:53.688 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:12:53.688 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:12:53.688 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:12:53.708 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:53.708 -07 000000502 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:12:53.708 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:12:53.708 -07 000000429 INF: FPGA: 'ZDACW 29920' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 20:12:53.708 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 209 ms to get response, and 216 ms overall
17-03-17 20:12:53.708 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:53.708 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 202 ms to get response, and 212 ms overall
17-03-17 20:12:53.708 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:53.708 -07 000000458 INF: FPGA: Recv ZDACR 29920
17-03-17 20:12:53.708 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:53.708 -07 000000576 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:12:53.718 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:53.718 -07 000000429 INF: Z Motor: MoveAbsStepped took 220 ms (did NOT wait for settling yet))
17-03-17 20:12:53.718 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:53.728 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:53.928 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:53.928 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 222 ms overall
17-03-17 20:12:54.088 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:12:54.088 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:12:54.128 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:54.138 -07 000000459 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:12:54.138 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:12:54.138 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:54.138 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:12:54.138 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.207 mm/sec
17-03-17 20:12:55.088 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:55.088 -07 000000608 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:12:55.098 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:55.098 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:55.118 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:55.118 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:55.118 -07 000000576 INF: Y Motor: Moved to 69.8633 after 1624 ms (table move)
17-03-17 20:12:55.118 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136965 mm (DAC = 29920)
17-03-17 20:12:55.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.128 -07 000000551 INF: FPGA: Recv ZSGSRD 30610
17-03-17 20:12:55.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:12:55.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30597
17-03-17 20:12:55.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.138 -07 000000458 INF: FPGA: Recv ZSGSRD 30612
17-03-17 20:12:55.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.148 -07 000000459 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:12:55.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:12:55.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30610
17-03-17 20:12:55.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.188 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.983999,
17-03-17 20:12:55.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:12:55.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:12:55.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30613
17-03-17 20:12:55.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:12:55.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30617
17-03-17 20:12:55.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:55.238 -07 000000459 INF: FPGA: Recv ZSGSRD 30613
17-03-17 20:12:55.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:12:55.268 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:55.268 -07 000000576 INF: FPGA: Recv ZPIEZORD 26634
17-03-17 20:12:55.278 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -8.8 V.
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30610 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30611 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30597 (-136.1 uncal um), Max = 30617 (-136.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30610, posNoise = 7, negNoise = 13
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: After move to -0.136965, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: Settle wait time = 1624 ms, measure time = 154 ms (allowed 150 ms), total time = 1778 ms
17-03-17 20:12:55.278 -07 000000541 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 20:12:55.278 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1784 ms
17-03-17 20:12:55.278 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:55.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:55.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:55.278 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:55.278 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:55.278 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:55.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:55.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:55.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:55.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:55.288 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:55.288 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:12:55.288 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:12:55.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:55.338 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:12:55.538 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:12:55.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:12:55.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:55.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2924843224, 0x0, 559484976) start.
17-03-17 20:12:55.578 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:55.578 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:55.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:12:55.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2924843224, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:12:55.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:55.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:12:55.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:12:55.678 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:55.678 -07 000000431 INF: Autofocus start
17-03-17 20:12:55.678 -07 000000431 INF: MeasureProfile start
17-03-17 20:12:55.678 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:55.688 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:55.688 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:55.698 -07 000000431 INF: MeasureProfile done
17-03-17 20:12:55.698 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:12:55.698 -07 000000431 INF: Autofocus finished
17-03-17 20:12:55.888 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:55.888 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:12:55.898 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136968485670438. ----------
17-03-17 20:12:55.898 -07 000000610 INF: Cycle	35	Tile	13	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:55.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True)
17-03-17 20:12:55.898 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.136968 mm, distance = 6.76 um
17-03-17 20:12:55.898 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor]
17-03-17 20:12:55.898 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:12:55.908 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:12:55.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:55.908 -07 000000502 INF: FPGA: Recv ZDACR 28444
17-03-17 20:12:55.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:55.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:12:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.068 -07 000000424 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:12:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29562
17-03-17 20:12:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.088 -07 000000431 INF: FPGA: Recv ZSGSRD 29554
17-03-17 20:12:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:12:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29559
17-03-17 20:12:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29555
17-03-17 20:12:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29558
17-03-17 20:12:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.138 -07 000000502 INF: FPGA: Recv ZSGSRD 29559
17-03-17 20:12:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.148 -07 000000429 INF: FPGA: Recv ZSGSRD 29563
17-03-17 20:12:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:56.158 -07 000000569 INF: FPGA: Recv ZSGSRD 29557
17-03-17 20:12:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:56.168 -07 000000424 INF: FPGA: Recv ZPIEZORD 25266
17-03-17 20:12:56.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:56.178 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.4 V.
17-03-17 20:12:56.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29559 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29563 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:12:56.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 4, negNoise = 5
17-03-17 20:12:56.178 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:56.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:12:56.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:56.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:56.178 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:56.178 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:56.178 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:12:56.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:56.178 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:12:56.178 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:12:56.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:56.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:12:56.178 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:12:56.188 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:12:56.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:56.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:12:56.188 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:12:56.188 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:12:56.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:12:56.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:12:56.198 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:12:56.198 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:12:56.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28621 150\n [Camera]
17-03-17 20:12:56.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:12:56.758 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:12:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:12:56.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:12:56.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:12:56.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:56.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:56.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:12:56.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:12:56.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:12:56.818 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:56.818 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:56.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:12:56.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 796
17-03-17 20:12:57.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:12:57.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:12:57.208 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:12:57.208 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:57.218 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:12:57.218 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:12:57.218 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:57.218 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:57.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:12:57.218 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:57.228 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:12:57.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:12:57.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:12:57.348 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:12:57.348 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:12:57.348 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:12:57.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:12:57.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:12:57.358 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:12:57.358 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:12:57.358 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:12:57.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:12:57.538 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:12:57.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28621 150' command took 2 ms to send, 1339 ms to get response, and 1343 ms overall
17-03-17 20:12:57.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:12:57.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130216638709447. ------
17-03-17 20:12:57.548 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:57.548 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13655 mm
17-03-17 20:12:57.548 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:12:57.548 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:12:57.548 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:12:57.558 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:57.748 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:12:57.748 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:12:57.748 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:57.748 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:12:57.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:12:57.758 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:12:57.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:57.758 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:12:57.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:12:57.768 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:12:57.768 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29829, sync = True, waitForSettling = False)
17-03-17 20:12:57.768 -07 000000458 INF: Z Motor: Moving to -0.136548 mm, started at -0.130217 mm, distance = -6.33 um
17-03-17 20:12:57.768 -07 000000458 INF: FPGA: Xmit ZDACW 29829\n [Z Motor]
17-03-17 20:12:57.778 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:57.778 -07 000000431 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:12:57.778 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 226 ms overall
17-03-17 20:12:57.778 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 224 ms overall
17-03-17 20:12:57.778 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:57.778 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:12:57.778 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:12:57.778 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:12:57.788 -07 000000458 INF: FPGA: 'ZDACW 29829' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:57.788 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:57.788 -07 000000431 INF: FPGA: Recv ZDACR 29829
17-03-17 20:12:57.798 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:12:57.798 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:57.798 -07 000000458 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:12:57.808 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:12:57.998 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:12:57.998 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:12:58.178 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:12:58.178 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 20:12:58.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:58.218 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:12:58.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:12:58.228 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:58.228 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:12:58.228 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.839 mm, average velocity = 2.078 mm/sec
17-03-17 20:12:59.178 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:12:59.178 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:12:59.188 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:12:59.188 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:12:59.208 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:12:59.208 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:12:59.208 -07 000000462 INF: Y Motor: Moved to 70.6890 after 1656 ms (table move)
17-03-17 20:12:59.208 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136548 mm (DAC = 29829)
17-03-17 20:12:59.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.218 -07 000000569 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:12:59.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:12:59.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30541
17-03-17 20:12:59.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30544
17-03-17 20:12:59.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30547
17-03-17 20:12:59.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30553
17-03-17 20:12:59.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.258 -07 000000458 INF: FPGA: Recv ZSGSRD 30548
17-03-17 20:12:59.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.268 -07 000000462 INF: FPGA: Recv ZSGSRD 30546
17-03-17 20:12:59.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30542
17-03-17 20:12:59.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.288 -07 000000458 INF: FPGA: Recv ZSGSRD 30546
17-03-17 20:12:59.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:12:59.298 -07 000000569 INF: FPGA: Recv ZSGSRD 30538
17-03-17 20:12:59.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.308 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:12:59.308 -07 000000431 INF: FPGA: Recv ZPIEZORD 26559
17-03-17 20:12:59.318 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -8.8 V.
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30546 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30546 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30538 (-135.7 uncal um), Max = 30553 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30546, posNoise = 7, negNoise = 8
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: After move to -0.136548, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:12:59.318 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:12:59.368 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-17 20:12:59.368 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:12:59.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:12:59.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:12:59.368 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:12:59.368 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:12:59.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:12:59.368 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:12:59.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:12:59.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:12:59.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:12:59.378 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:12:59.378 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:12:59.378 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:12:59.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:12:59.428 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 20:12:59.628 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 20:12:59.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 20:12:59.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:12:59.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-17 20:12:59.668 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:12:59.668 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:12:59.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:12:59.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:12:59.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:12:59.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:12:59.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:12:59.768 -07 000000541 INF: Autofocus start
17-03-17 20:12:59.768 -07 000000541 INF: MeasureProfile start
17-03-17 20:12:59.768 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:12:59.768 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:12:59.778 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:12:59.778 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:12:59.778 -07 000000541 INF: MeasureProfile done
17-03-17 20:12:59.778 -07 000000541 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:12:59.778 -07 000000541 INF: Autofocus finished
17-03-17 20:12:59.978 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:12:59.978 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:12:59.978 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136557336093365. ----------
17-03-17 20:12:59.978 -07 000000610 INF: Cycle	35	Tile	14	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:12:59.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28337, sync = True, waitForSettling = True)
17-03-17 20:12:59.988 -07 000000610 INF: Z Motor: Moving to -0.129718 mm, started at -0.136557 mm, distance = 6.84 um
17-03-17 20:12:59.988 -07 000000610 INF: FPGA: Xmit ZDACW 28337\n [Z Motor]
17-03-17 20:12:59.988 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:12:59.998 -07 000000610 INF: FPGA: 'ZDACW 28337' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:12:59.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:12:59.998 -07 000000462 INF: FPGA: Recv ZDACR 28337
17-03-17 20:13:00.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:13:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:13:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:13:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29483
17-03-17 20:13:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.198 -07 000000569 INF: FPGA: Recv ZSGSRD 29486
17-03-17 20:13:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29483
17-03-17 20:13:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.228 -07 000000382 INF: FPGA: Recv ZSGSRD 29476
17-03-17 20:13:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:13:00.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29477
17-03-17 20:13:00.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:13:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.268 -07 000000462 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:13:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:13:00.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:00.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29477
17-03-17 20:13:00.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:00.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:00.318 -07 000000462 INF: FPGA: Recv ZPIEZORD 25168
17-03-17 20:13:00.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:13:00.328 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.5 V.
17-03-17 20:13:00.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29481 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29481 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29476 (-128.9 uncal um), Max = 29486 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:13:00.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29481, posNoise = 5, negNoise = 5
17-03-17 20:13:00.328 -07 000000610 INF: Z Motor: After move to -0.129718, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:00.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-17 20:13:00.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:00.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:00.328 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:00.328 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:00.328 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:00.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:00.328 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:00.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:00.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:13:00.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:00.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:13:00.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:00.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:00.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:00.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:13:00.338 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:00.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:13:00.348 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:13:00.348 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:13:00.348 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:13:00.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28513 150\n [Camera]
17-03-17 20:13:00.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:00.608 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 3.973092,
17-03-17 20:13:00.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:13:00.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:13:00.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:00.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:00.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:13:00.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:13:00.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:13:00.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:00.958 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:00.958 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:13:01.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28513 796
17-03-17 20:13:01.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:13:01.338 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:13:01.338 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:13:01.338 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:01.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:01.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:13:01.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:13:01.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:01.348 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:13:01.358 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:01.358 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:13:01.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:13:01.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:13:01.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:01.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:01.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:13:01.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:13:01.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:13:01.498 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:01.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:01.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:13:01.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:13:01.688 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:01.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28513 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall
17-03-17 20:13:01.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:13:01.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.12971555016239. ------
17-03-17 20:13:01.698 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13636 mm
17-03-17 20:13:01.698 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:13:01.698 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:01.698 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:13:01.698 -07 000000476 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:13:01.698 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29788, sync = True, waitForSettling = False)
17-03-17 20:13:01.698 -07 000000382 INF: Z Motor: Moving to -0.136361 mm, started at -0.129716 mm, distance = -6.65 um
17-03-17 20:13:01.708 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:01.718 -07 000000382 INF: FPGA: Xmit ZDACW 29788\n [Z Motor]
17-03-17 20:13:01.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:13:01.898 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:13:01.898 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:01.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:13:01.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:13:01.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:01.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:01.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:13:01.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:13:01.918 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:13:01.918 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:01.918 -07 000000569 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:13:01.918 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 223 ms overall
17-03-17 20:13:01.918 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:13:01.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:01.918 -07 000000382 INF: FPGA: 'ZDACW 29788' command took 0 ms to send, 198 ms to get response, and 220 ms overall
17-03-17 20:13:01.918 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:01.918 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 220 ms overall
17-03-17 20:13:01.918 -07 000000476 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:01.918 -07 000000476 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:13:01.918 -07 000000476 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:13:01.928 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:13:01.928 -07 000000569 INF: FPGA: Recv ZDACR 29788
17-03-17 20:13:01.928 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:13:01.928 -07 000000382 INF: Z Motor: MoveAbsStepped took 223 ms (did NOT wait for settling yet))
17-03-17 20:13:01.938 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:13:02.138 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:13:02.138 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-17 20:13:02.298 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:13:02.298 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:13:02.338 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:02.338 -07 000000541 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:13:02.348 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:02.348 -07 000000476 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:02.348 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:13:02.348 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 20:13:03.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:03.298 -07 000000459 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:13:03.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.308 -07 000000476 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:03.328 -07 000000476 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:03.328 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:13:03.328 -07 000000476 INF: Y Motor: Moved to 71.5195 after 1626 ms (table move)
17-03-17 20:13:03.328 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136361 mm (DAC = 29788)
17-03-17 20:13:03.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.338 -07 000000459 INF: FPGA: Recv ZSGSRD 30523
17-03-17 20:13:03.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:13:03.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.338 -07 000000382 INF: FPGA: Recv ZSGSRD 30510
17-03-17 20:13:03.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.348 -07 000000476 INF: FPGA: Recv ZSGSRD 30517
17-03-17 20:13:03.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30510
17-03-17 20:13:03.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.368 -07 000000476 INF: FPGA: Recv ZSGSRD 30522
17-03-17 20:13:03.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30518
17-03-17 20:13:03.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30516
17-03-17 20:13:03.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.398 -07 000000459 INF: FPGA: Recv ZSGSRD 30509
17-03-17 20:13:03.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30513
17-03-17 20:13:03.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:03.418 -07 000000382 INF: FPGA: Recv ZSGSRD 30514
17-03-17 20:13:03.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.428 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:03.428 -07 000000541 INF: FPGA: Recv ZPIEZORD 26581
17-03-17 20:13:03.438 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30515 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30515 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30509 (-135.5 uncal um), Max = 30523 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30515, posNoise = 8, negNoise = 6
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: After move to -0.136361, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: Settle wait time = 1629 ms, measure time = 103 ms (allowed 150 ms), total time = 1732 ms
17-03-17 20:13:03.438 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:13:03.488 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1785 ms
17-03-17 20:13:03.488 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:13:03.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:03.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:03.488 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:03.488 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:03.488 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:13:03.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:03.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:13:03.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:13:03.498 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:03.498 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:13:03.498 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:13:03.498 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:13:03.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:13:03.548 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:13:03.748 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:13:03.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:13:03.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:13:03.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) start.
17-03-17 20:13:03.788 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:13:03.788 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:13:03.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:13:03.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:13:03.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:03.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:13:03.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:13:03.888 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:03.888 -07 000000476 INF: Autofocus start
17-03-17 20:13:03.888 -07 000000476 INF: MeasureProfile start
17-03-17 20:13:03.888 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:03.898 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:03.898 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:13:03.898 -07 000000476 INF: MeasureProfile done
17-03-17 20:13:03.898 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:13:03.898 -07 000000476 INF: Autofocus finished
17-03-17 20:13:04.098 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:13:04.098 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:13:04.098 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136358185516971. ----------
17-03-17 20:13:04.098 -07 000000610 INF: Cycle	35	Tile	15	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:13:04.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28312, sync = True, waitForSettling = True)
17-03-17 20:13:04.108 -07 000000610 INF: Z Motor: Moving to -0.129604 mm, started at -0.136358 mm, distance = 6.75 um
17-03-17 20:13:04.108 -07 000000610 INF: FPGA: Xmit ZDACW 28312\n [Z Motor]
17-03-17 20:13:04.108 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:13:04.118 -07 000000610 INF: FPGA: 'ZDACW 28312' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:04.118 -07 000000438 INF: FPGA: Recv ZDACR 28312
17-03-17 20:13:04.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29460
17-03-17 20:13:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:04.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.288 -07 000000486 INF: FPGA: Recv ZSGSRD 29464
17-03-17 20:13:04.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29463
17-03-17 20:13:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.308 -07 000000502 INF: FPGA: Recv ZSGSRD 29471
17-03-17 20:13:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.318 -07 000000541 INF: FPGA: Recv ZSGSRD 29463
17-03-17 20:13:04.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.328 -07 000000627 INF: FPGA: Recv ZSGSRD 29462
17-03-17 20:13:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29468
17-03-17 20:13:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.348 -07 000000486 INF: FPGA: Recv ZSGSRD 29456
17-03-17 20:13:04.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29460
17-03-17 20:13:04.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:04.368 -07 000000438 INF: FPGA: Recv ZSGSRD 29463
17-03-17 20:13:04.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:04.378 -07 000000475 INF: FPGA: Recv ZPIEZORD 25140
17-03-17 20:13:04.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:04.388 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.5 V.
17-03-17 20:13:04.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29463 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29463 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29456 (-128.8 uncal um), Max = 29471 (-128.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:13:04.388 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29463, posNoise = 8, negNoise = 7
17-03-17 20:13:04.388 -07 000000610 INF: Z Motor: After move to -0.129604, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:04.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:13:04.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:04.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:04.388 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:04.388 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:04.388 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:04.388 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:04.388 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:04.388 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:04.388 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:04.398 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:13:04.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:04.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:04.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:13:04.398 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:04.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:04.398 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:04.408 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:13:04.408 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:04.408 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:13:04.408 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:13:04.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28489 150\n [Camera]
17-03-17 20:13:04.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:05.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:13:05.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:13:05.018 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:05.018 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:05.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:13:05.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:13:05.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:13:05.028 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:05.028 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:05.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:13:05.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28489 796
17-03-17 20:13:05.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:13:05.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:13:05.418 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:13:05.418 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:05.418 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:05.418 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:13:05.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:13:05.428 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:13:05.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:05.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:05.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:13:05.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:13:05.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:13:05.558 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:05.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:13:05.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:13:05.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:05.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:13:05.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:05.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:05.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:13:05.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:13:05.758 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:05.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28489 150' command took 2 ms to send, 1340 ms to get response, and 1344 ms overall
17-03-17 20:13:05.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:13:05.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129599914343838. ------
17-03-17 20:13:05.758 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:05.758 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13552 mm
17-03-17 20:13:05.758 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:13:05.758 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:13:05.758 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:13:05.758 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29604, sync = True, waitForSettling = False)
17-03-17 20:13:05.758 -07 000000438 INF: Z Motor: Moving to -0.135518 mm, started at -0.129600 mm, distance = -5.92 um
17-03-17 20:13:05.758 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:05.768 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:13:05.768 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:05.768 -07 000000382 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:13:05.778 -07 000000438 INF: FPGA: Xmit ZDACW 29604\n [Z Motor]
17-03-17 20:13:05.778 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:13:05.778 -07 000000502 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:05.778 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:13:05.778 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:13:05.778 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:13:05.788 -07 000000438 INF: FPGA: 'ZDACW 29604' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:13:05.788 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:13:05.798 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:13:05.808 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:05.808 -07 000000608 INF: FPGA: Recv ZDACR 29604
17-03-17 20:13:05.818 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:05.818 -07 000000438 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:13:05.988 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:13:05.988 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:13:06.038 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.015368,
17-03-17 20:13:06.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:13:06.098 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:13:06.098 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:06.098 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:13:06.098 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:13:06.098 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:06.098 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:06.098 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:06.098 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-17 20:13:06.108 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:13:06.168 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:13:06.168 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:13:06.208 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:06.208 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:13:06.218 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:06.218 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:06.218 -07 000000502 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:13:06.218 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 20:13:06.758 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:07.168 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:07.168 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:13:07.178 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:07.178 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:07.198 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:07.198 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:13:07.198 -07 000000502 INF: Y Motor: Moved to 72.3496 after 1436 ms (table move)
17-03-17 20:13:07.198 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135518 mm (DAC = 29604)
17-03-17 20:13:07.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.198 -07 000000424 INF: FPGA: Recv ZSGSRD 30389
17-03-17 20:13:07.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:13:07.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30380
17-03-17 20:13:07.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.218 -07 000000541 INF: FPGA: Recv ZSGSRD 30386
17-03-17 20:13:07.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:13:07.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30388
17-03-17 20:13:07.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.248 -07 000000458 INF: FPGA: Recv ZSGSRD 30395
17-03-17 20:13:07.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.258 -07 000000424 INF: FPGA: Recv ZSGSRD 30386
17-03-17 20:13:07.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.268 -07 000000476 INF: FPGA: Recv ZSGSRD 30385
17-03-17 20:13:07.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.278 -07 000000541 INF: FPGA: Recv ZSGSRD 30381
17-03-17 20:13:07.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:07.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30384
17-03-17 20:13:07.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.298 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:07.298 -07 000000502 INF: FPGA: Recv ZPIEZORD 26379
17-03-17 20:13:07.308 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.8 V.
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30386 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30380 (-134.7 uncal um), Max = 30395 (-134.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 9, negNoise = 6
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: After move to -0.135518, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:13:07.308 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:13:07.358 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:13:07.358 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:13:07.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:07.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:07.358 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:07.358 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:13:07.358 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:07.358 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:13:07.358 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:07.358 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:13:07.368 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:07.368 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:13:07.368 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:13:07.368 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:13:07.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:13:07.418 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:13:07.618 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:13:07.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:13:07.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:13:07.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:13:07.658 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:13:07.658 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:13:07.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:13:07.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:13:07.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:07.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:13:07.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:13:07.758 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:07.758 -07 000000459 INF: Autofocus start
17-03-17 20:13:07.758 -07 000000459 INF: MeasureProfile start
17-03-17 20:13:07.758 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:07.768 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:13:07.768 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:13:07.778 -07 000000459 INF: MeasureProfile done
17-03-17 20:13:07.778 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:13:07.778 -07 000000459 INF: Autofocus finished
17-03-17 20:13:07.968 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:13:07.968 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:13:07.968 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135529462150683. ----------
17-03-17 20:13:07.968 -07 000000610 INF: Cycle	35	Tile	16	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:13:07.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28099, sync = True, waitForSettling = True)
17-03-17 20:13:07.978 -07 000000610 INF: Z Motor: Moving to -0.128629 mm, started at -0.135529 mm, distance = 6.90 um
17-03-17 20:13:07.978 -07 000000610 INF: FPGA: Xmit ZDACW 28099\n [Z Motor]
17-03-17 20:13:07.978 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:13:07.988 -07 000000610 INF: FPGA: 'ZDACW 28099' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:13:07.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:07.988 -07 000000502 INF: FPGA: Recv ZDACR 28099
17-03-17 20:13:07.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:07.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29311
17-03-17 20:13:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.158 -07 000000424 INF: FPGA: Recv ZSGSRD 29312
17-03-17 20:13:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.168 -07 000000476 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:13:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.178 -07 000000424 INF: FPGA: Recv ZSGSRD 29318
17-03-17 20:13:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.188 -07 000000459 INF: FPGA: Recv ZSGSRD 29310
17-03-17 20:13:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29312
17-03-17 20:13:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29311
17-03-17 20:13:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29314
17-03-17 20:13:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.228 -07 000000476 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:13:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:08.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:13:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:08.248 -07 000000476 INF: FPGA: Recv ZPIEZORD 24940
17-03-17 20:13:08.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:08.258 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.6 V.
17-03-17 20:13:08.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29313 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29310 (-127.8 uncal um), Max = 29318 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:13:08.258 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 4, negNoise = 4
17-03-17 20:13:08.258 -07 000000610 INF: Z Motor: After move to -0.128629, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:08.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:13:08.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:08.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:08.258 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:08.258 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:08.258 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:08.258 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:08.258 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:08.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:08.258 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:13:08.258 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:08.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:13:08.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:08.268 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:13:08.268 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:08.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:13:08.268 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:08.278 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:13:08.278 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:08.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:13:08.278 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:13:08.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28276 150\n [Camera]
17-03-17 20:13:08.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:08.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:13:08.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:13:08.888 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:08.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:13:08.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:13:08.888 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:08.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:08.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:13:08.908 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:08.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:13:09.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28276 796
17-03-17 20:13:09.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:13:09.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:13:09.298 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:13:09.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:09.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:13:09.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:13:09.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:09.298 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:09.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:09.308 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:13:09.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:13:09.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:13:09.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:13:09.438 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:09.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:13:09.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:13:09.548 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:09.548 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:09.548 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2183041184, 0x0, 418435064) start.
17-03-17 20:13:09.558 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:09.558 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:13:09.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:13:09.628 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:09.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28276 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-17 20:13:09.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:13:09.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128642706734716. ------
17-03-17 20:13:09.628 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:09.628 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13519 mm
17-03-17 20:13:09.628 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:13:09.638 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:13:09.638 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:09.638 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:13:09.638 -07 000000623 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:13:09.638 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:09.638 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29532, sync = True, waitForSettling = False)
17-03-17 20:13:09.638 -07 000000502 INF: Z Motor: Moving to -0.135189 mm, started at -0.128643 mm, distance = -6.55 um
17-03-17 20:13:09.638 -07 000000475 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:13:09.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:09.648 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:09.648 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:13:09.648 -07 000000623 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:13:09.648 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:13:09.658 -07 000000502 INF: FPGA: Xmit ZDACW 29532\n [Z Motor]
17-03-17 20:13:09.658 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:13:09.668 -07 000000502 INF: FPGA: 'ZDACW 29532' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:13:09.668 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:13:09.678 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:09.678 -07 000000459 INF: FPGA: Recv ZDACR 29532
17-03-17 20:13:09.688 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:13:09.688 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:13:09.848 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:13:09.848 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:13:09.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:13:09.948 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:13:09.948 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:09.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2183041184, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:13:09.958 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:13:09.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:09.958 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:09.958 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 20:13:09.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:09.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:13:10.038 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:13:10.038 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:13:10.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:10.078 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:13:10.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:13:10.088 -07 000000623 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:10.088 -07 000000623 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:13:10.088 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-17 20:13:11.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:11.038 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:13:11.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:11.048 -07 000000623 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:11.068 -07 000000623 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:11.068 -07 000000623 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:13:11.068 -07 000000623 INF: Y Motor: Moved to 73.1763 after 1432 ms (table move)
17-03-17 20:13:11.068 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135189 mm (DAC = 29532)
17-03-17 20:13:11.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30334
17-03-17 20:13:11.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:13:11.118 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30333
17-03-17 20:13:11.128 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:11.148 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.148 -07 000000459 INF: FPGA: Recv ZSGSRD 30327
17-03-17 20:13:11.158 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:11.158 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30329
17-03-17 20:13:11.168 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.168 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.168 -07 000000502 INF: FPGA: Recv ZSGSRD 30338
17-03-17 20:13:11.178 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.178 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30343
17-03-17 20:13:11.188 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.188 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.188 -07 000000623 INF: FPGA: Recv ZSGSRD 30334
17-03-17 20:13:11.198 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.198 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.198 -07 000000475 INF: FPGA: Recv ZSGSRD 30335
17-03-17 20:13:11.208 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.208 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.208 -07 000000551 INF: FPGA: Recv ZSGSRD 30334
17-03-17 20:13:11.218 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:11.218 -07 000000551 INF: FPGA: Recv ZSGSRD 30327
17-03-17 20:13:11.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.228 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:11.228 -07 000000551 INF: FPGA: Recv ZPIEZORD 26328
17-03-17 20:13:11.238 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.238 -07 000000458 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -8.8 V.
17-03-17 20:13:11.238 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30333 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30334 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30327 (-134.4 uncal um), Max = 30343 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:13:11.238 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30333, posNoise = 10, negNoise = 6
17-03-17 20:13:11.248 -07 000000458 INF: Z Motor: After move to -0.135189, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:11.248 -07 000000458 INF: Z Motor: Settle wait time = 1435 ms, measure time = 178 ms (allowed 150 ms), total time = 1613 ms
17-03-17 20:13:11.248 -07 000000458 INF: Z Motor: Warning: Actual position measuring time = 178 ms, longer than max expected time of 150 ms
17-03-17 20:13:11.248 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 20:13:11.248 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:13:11.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:11.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:11.258 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:11.258 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:13:11.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:11.258 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:11.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:11.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:13:11.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:11.258 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:13:11.268 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:13:11.268 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:13:11.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:13:11.318 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:13:11.398 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.014009,
17-03-17 20:13:11.518 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:13:11.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:13:11.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:13:11.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 20:13:11.558 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:13:11.558 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:13:11.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:13:11.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:13:11.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:11.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:13:11.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:13:11.758 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:11.758 -07 000000475 INF: Autofocus start
17-03-17 20:13:11.758 -07 000000475 INF: MeasureProfile start
17-03-17 20:13:11.758 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:11.758 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:11.768 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:11.768 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:13:11.768 -07 000000475 INF: MeasureProfile done
17-03-17 20:13:11.768 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:13:11.768 -07 000000475 INF: Autofocus finished
17-03-17 20:13:11.968 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:13:11.968 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:13:11.968 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.13518897890717. ----------
17-03-17 20:13:11.968 -07 000000610 INF: Cycle	35	Tile	17	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:13:11.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28039, sync = True, waitForSettling = True)
17-03-17 20:13:11.978 -07 000000610 INF: Z Motor: Moving to -0.128354 mm, started at -0.135189 mm, distance = 6.83 um
17-03-17 20:13:11.978 -07 000000610 INF: FPGA: Xmit ZDACW 28039\n [Z Motor]
17-03-17 20:13:11.978 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:13:11.988 -07 000000610 INF: FPGA: 'ZDACW 28039' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:11.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:11.988 -07 000000458 INF: FPGA: Recv ZDACR 28039
17-03-17 20:13:11.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:11.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.148 -07 000000424 INF: FPGA: Recv ZSGSRD 29268
17-03-17 20:13:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29269
17-03-17 20:13:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29275
17-03-17 20:13:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29262
17-03-17 20:13:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.188 -07 000000424 INF: FPGA: Recv ZSGSRD 29271
17-03-17 20:13:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.198 -07 000000459 INF: FPGA: Recv ZSGSRD 29271
17-03-17 20:13:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29268
17-03-17 20:13:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29272
17-03-17 20:13:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29269
17-03-17 20:13:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:12.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29267
17-03-17 20:13:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:12.248 -07 000000424 INF: FPGA: Recv ZPIEZORD 24910
17-03-17 20:13:12.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:12.258 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.6 V.
17-03-17 20:13:12.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29269 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29269 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29262 (-127.5 uncal um), Max = 29275 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:13:12.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29269, posNoise = 6, negNoise = 7
17-03-17 20:13:12.258 -07 000000610 INF: Z Motor: After move to -0.128354, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:12.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:13:12.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:12.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:12.258 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:12.258 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:12.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:12.258 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:12.258 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:12.258 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:12.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:13:12.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:12.258 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:12.258 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:12.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:13:12.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:12.258 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:12.258 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:12.268 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:13:12.268 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:13:12.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:13:12.278 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:12.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28216 150\n [Camera]
17-03-17 20:13:12.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:12.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:13:12.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:13:12.888 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:12.888 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:12.888 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218463448, 0x0, 391868352) start.
17-03-17 20:13:12.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603
17-03-17 20:13:12.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603
17-03-17 20:13:12.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:12.888 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:12.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:13:13.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28216 796
17-03-17 20:13:13.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:13:13.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:13:13.268 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:13:13.268 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:13.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218463448, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:13:13.268 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:13:13.268 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:13.278 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:13.278 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:13.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:13:13.278 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:13:13.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146
17-03-17 20:13:13.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146
17-03-17 20:13:13.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:13.548 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146
17-03-17 20:13:13.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146
17-03-17 20:13:13.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:13.548 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:13.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:13:13.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:13.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:13:13.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:13:13.618 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:13.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28216 150' command took 2 ms to send, 1335 ms to get response, and 1343 ms overall
17-03-17 20:13:13.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:13:13.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128353617188336. ------
17-03-17 20:13:13.628 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:13.628 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13470 mm
17-03-17 20:13:13.628 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:13:13.628 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:13.628 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:13:13.628 -07 000000627 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:13:13.628 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29425, sync = True, waitForSettling = False)
17-03-17 20:13:13.628 -07 000000424 INF: Z Motor: Moving to -0.134699 mm, started at -0.128354 mm, distance = -6.35 um
17-03-17 20:13:13.638 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:13:13.638 -07 000000424 INF: FPGA: Xmit ZDACW 29425\n [Z Motor]
17-03-17 20:13:13.638 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:13:13.648 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:13.648 -07 000000424 INF: FPGA: 'ZDACW 29425' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:13:13.648 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:13:13.658 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:13:13.658 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:13:13.658 -07 000000627 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:13.658 -07 000000627 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:13:13.658 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 20:13:13.668 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:13.668 -07 000000429 INF: FPGA: Recv ZDACR 29425
17-03-17 20:13:13.678 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:13.678 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:13:13.678 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:13:13.858 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:13:13.858 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:13:13.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:13:13.938 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:13:13.938 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:13.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:13:13.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:13:13.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:13.938 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:13.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:13.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 20:13:13.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:13:14.048 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:13:14.048 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 393 ms overall
17-03-17 20:13:14.078 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:14.088 -07 000000431 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:13:14.088 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:13:14.088 -07 000000627 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:14.088 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:13:14.088 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.154 mm/sec
17-03-17 20:13:15.038 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:15.038 -07 000000459 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:13:15.048 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:15.048 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:15.058 -07 000000627 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:15.058 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:13:15.058 -07 000000627 INF: Y Motor: Moved to 74.0083 after 1432 ms (table move)
17-03-17 20:13:15.068 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134699 mm (DAC = 29425)
17-03-17 20:13:15.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30258
17-03-17 20:13:15.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:13:15.078 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.078 -07 000000438 INF: FPGA: Recv ZSGSRD 30263
17-03-17 20:13:15.088 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.088 -07 000000438 INF: FPGA: Recv ZSGSRD 30259
17-03-17 20:13:15.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30260
17-03-17 20:13:15.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.108 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.108 -07 000000502 INF: FPGA: Recv ZSGSRD 30262
17-03-17 20:13:15.118 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.118 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.118 -07 000000502 INF: FPGA: Recv ZSGSRD 30254
17-03-17 20:13:15.128 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.128 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.128 -07 000000502 INF: FPGA: Recv ZSGSRD 30258
17-03-17 20:13:15.138 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.138 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.138 -07 000000459 INF: FPGA: Recv ZSGSRD 30256
17-03-17 20:13:15.148 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.148 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30255
17-03-17 20:13:15.158 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.158 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:15.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30257
17-03-17 20:13:15.168 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.168 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:15.168 -07 000000459 INF: FPGA: Recv ZPIEZORD 26228
17-03-17 20:13:15.178 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -8.9 V.
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30258 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30258 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30254 (-133.9 uncal um), Max = 30263 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30258, posNoise = 5, negNoise = 4
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: After move to -0.134699, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:13:15.178 -07 000000458 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:13:15.228 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:13:15.228 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:13:15.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:15.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:15.228 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:15.228 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:15.228 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:13:15.228 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:15.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:15.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:13:15.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:13:15.238 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:13:15.248 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:13:15.248 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:13:15.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:13:15.288 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:13:15.488 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:13:15.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:13:15.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:13:15.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596330312, 0x0, 559484976) start.
17-03-17 20:13:15.528 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:13:15.538 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:13:15.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 20:13:15.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596330312, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:13:15.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:15.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:13:15.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:13:15.638 -07 000000576 INF: Autofocus start
17-03-17 20:13:15.638 -07 000000576 INF: MeasureProfile start
17-03-17 20:13:15.638 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:15.638 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:15.648 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:15.648 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:13:15.648 -07 000000576 INF: MeasureProfile done
17-03-17 20:13:15.648 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:13:15.648 -07 000000576 INF: Autofocus finished
17-03-17 20:13:15.848 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:13:15.848 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:13:15.848 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134707162996538. ----------
17-03-17 20:13:15.848 -07 000000610 INF: Cycle	35	Tile	18	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:13:15.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27950, sync = True, waitForSettling = True)
17-03-17 20:13:15.858 -07 000000610 INF: Z Motor: Moving to -0.127947 mm, started at -0.134707 mm, distance = 6.76 um
17-03-17 20:13:15.858 -07 000000610 INF: FPGA: Xmit ZDACW 27950\n [Z Motor]
17-03-17 20:13:15.858 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:13:15.868 -07 000000610 INF: FPGA: 'ZDACW 27950' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:15.868 -07 000000486 INF: FPGA: Recv ZDACR 27950
17-03-17 20:13:15.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:15.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.028 -07 000000458 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:13:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.038 -07 000000608 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:13:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.048 -07 000000438 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:13:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:13:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.068 -07 000000502 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:13:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:13:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.088 -07 000000576 INF: FPGA: Recv ZSGSRD 29202
17-03-17 20:13:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:13:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.108 -07 000000431 INF: FPGA: Recv ZSGSRD 29213
17-03-17 20:13:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:16.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29203
17-03-17 20:13:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:16.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:16.128 -07 000000576 INF: FPGA: Recv ZPIEZORD 24870
17-03-17 20:13:16.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:16.138 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -9.5 V.
17-03-17 20:13:16.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29207 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29202 (-127.1 uncal um), Max = 29213 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:13:16.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29207, posNoise = 6, negNoise = 5
17-03-17 20:13:16.138 -07 000000610 INF: Z Motor: After move to -0.127947, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:16.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:13:16.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:16.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:16.138 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:16.138 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:16.138 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:16.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:16.138 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:16.138 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:16.138 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:13:16.138 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:16.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:16.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:16.148 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:13:16.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:16.148 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:13:16.148 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:16.158 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:13:16.158 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:16.158 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:13:16.158 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:16.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28126 150\n [Camera]
17-03-17 20:13:16.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:16.758 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:16.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603
17-03-17 20:13:16.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603
17-03-17 20:13:16.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:16.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:16.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:13:16.778 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.020806,
17-03-17 20:13:16.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:13:16.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:13:16.778 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:16.778 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:16.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:13:16.958 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28126 796
17-03-17 20:13:17.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:13:17.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:13:17.158 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:13:17.158 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:17.158 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:13:17.158 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:13:17.158 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:17.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:17.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:13:17.158 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:13:17.168 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:13:17.308 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:13:17.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:13:17.308 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:17.418 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:13:17.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:13:17.418 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:17.418 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:17.418 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:13:17.428 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:17.428 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:13:17.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1336
17-03-17 20:13:17.498 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:17.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28126 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall
17-03-17 20:13:17.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:13:17.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127955316035547. ------
17-03-17 20:13:17.508 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:17.508 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13434 mm
17-03-17 20:13:17.508 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:13:17.508 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:13:17.508 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:13:17.508 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:17.508 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29347, sync = True, waitForSettling = False)
17-03-17 20:13:17.508 -07 000000486 INF: Z Motor: Moving to -0.134342 mm, started at -0.127955 mm, distance = -6.39 um
17-03-17 20:13:17.518 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:13:17.518 -07 000000486 INF: FPGA: Xmit ZDACW 29347\n [Z Motor]
17-03-17 20:13:17.518 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:13:17.528 -07 000000486 INF: FPGA: 'ZDACW 29347' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:13:17.528 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:17.528 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:13:17.538 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:13:17.538 -07 000000438 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:17.538 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:13:17.538 -07 000000438 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:13:17.538 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:13:17.548 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:17.548 -07 000000627 INF: FPGA: Recv ZDACR 29347
17-03-17 20:13:17.558 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:13:17.558 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:13:17.558 -07 000000486 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:13:17.738 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:13:17.738 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:13:17.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:13:17.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:13:17.818 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:17.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:13:17.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:13:17.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:17.828 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:17.828 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:13:17.828 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:13:17.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:13:17.938 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:13:17.938 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 20:13:17.958 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:17.958 -07 000000486 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:13:17.968 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:17.968 -07 000000438 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:17.968 -07 000000438 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:13:17.968 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.111 mm/sec
17-03-17 20:13:18.918 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:18.918 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:13:18.928 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:18.928 -07 000000438 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:18.938 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:18.938 -07 000000438 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:13:18.938 -07 000000438 INF: Y Motor: Moved to 74.8325 after 1428 ms (table move)
17-03-17 20:13:18.938 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134342 mm (DAC = 29347)
17-03-17 20:13:18.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:13:18.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:13:18.948 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.948 -07 000000502 INF: FPGA: Recv ZSGSRD 30206
17-03-17 20:13:18.958 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:13:18.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.958 -07 000000458 INF: FPGA: Recv ZSGSRD 30193
17-03-17 20:13:18.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:18.968 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30200
17-03-17 20:13:18.978 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:18.978 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30192
17-03-17 20:13:18.988 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:18.988 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:13:18.998 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:18.998 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:18.998 -07 000000458 INF: FPGA: Recv ZSGSRD 30205
17-03-17 20:13:19.008 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.008 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30207
17-03-17 20:13:19.018 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.018 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.018 -07 000000486 INF: FPGA: Recv ZSGSRD 30206
17-03-17 20:13:19.028 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.028 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.028 -07 000000569 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:13:19.038 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.038 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:19.038 -07 000000608 INF: FPGA: Recv ZPIEZORD 26149
17-03-17 20:13:19.048 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.9 V.
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30201 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30192 (-133.5 uncal um), Max = 30207 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30201, posNoise = 6, negNoise = 9
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: After move to -0.134342, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: Settle wait time = 1430 ms, measure time = 102 ms (allowed 150 ms), total time = 1532 ms
17-03-17 20:13:19.048 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:13:19.098 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:13:19.098 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:13:19.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:19.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:19.098 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:19.098 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:19.098 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:13:19.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:19.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:13:19.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:13:19.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:13:19.108 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:13:19.108 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:13:19.108 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:13:19.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:13:19.158 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:13:19.358 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:13:19.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:13:19.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:13:19.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 20:13:19.398 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:13:19.398 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:13:19.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:13:19.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:13:19.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:19.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:13:19.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:13:19.498 -07 000000458 INF: Autofocus start
17-03-17 20:13:19.498 -07 000000458 INF: MeasureProfile start
17-03-17 20:13:19.498 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:13:19.498 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:13:19.508 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:19.508 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:13:19.508 -07 000000458 INF: MeasureProfile done
17-03-17 20:13:19.508 -07 000000458 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:13:19.508 -07 000000458 INF: Autofocus finished
17-03-17 20:13:19.708 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:13:19.708 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:13:19.708 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134340982904458. ----------
17-03-17 20:13:19.708 -07 000000610 INF: Cycle	35	Tile	19	Exposure Settings		A	411	G	198	T	198	C	411
17-03-17 20:13:19.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27842, sync = True, waitForSettling = True)
17-03-17 20:13:19.718 -07 000000610 INF: Z Motor: Moving to -0.127453 mm, started at -0.134341 mm, distance = 6.89 um
17-03-17 20:13:19.718 -07 000000610 INF: FPGA: Xmit ZDACW 27842\n [Z Motor]
17-03-17 20:13:19.718 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:13:19.728 -07 000000610 INF: FPGA: 'ZDACW 27842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:13:19.728 -07 000000623 INF: FPGA: Recv ZDACR 27842
17-03-17 20:13:19.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:13:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.888 -07 000000502 INF: FPGA: Recv ZSGSRD 29128
17-03-17 20:13:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29130
17-03-17 20:13:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.908 -07 000000382 INF: FPGA: Recv ZSGSRD 29135
17-03-17 20:13:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29120
17-03-17 20:13:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.928 -07 000000502 INF: FPGA: Recv ZSGSRD 29124
17-03-17 20:13:19.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.938 -07 000000382 INF: FPGA: Recv ZSGSRD 29133
17-03-17 20:13:19.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.948 -07 000000486 INF: FPGA: Recv ZSGSRD 29129
17-03-17 20:13:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29130
17-03-17 20:13:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29127
17-03-17 20:13:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:13:19.978 -07 000000382 INF: FPGA: Recv ZSGSRD 29134
17-03-17 20:13:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:13:19.988 -07 000000486 INF: FPGA: Recv ZPIEZORD 24779
17-03-17 20:13:19.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:19.998 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.5 V.
17-03-17 20:13:19.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29129 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29130 (-126.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29120 (-126.6 uncal um), Max = 29135 (-126.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:13:19.998 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29129, posNoise = 6, negNoise = 9
17-03-17 20:13:19.998 -07 000000610 INF: Z Motor: After move to -0.127453, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:13:19.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:13:19.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:13:19.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:13:19.998 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:13:19.998 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:13:19.998 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:13:19.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:13:19.998 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:13:19.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:13:19.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:13:19.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:13:19.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:13:19.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:13:20.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:13:20.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:13:20.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:13:20.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:13:20.018 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:13:20.018 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:20.018 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:13:20.018 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:13:20.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28019 150\n [Camera]
17-03-17 20:13:20.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:13:20.628 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:13:20.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:13:20.628 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:20.628 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:20.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 20:13:20.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:13:20.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:13:20.638 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:20.638 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:20.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 20:13:20.818 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28019 796
17-03-17 20:13:20.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946
17-03-17 20:13:21.018 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:13:21.018 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:13:21.018 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:21.018 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:21.018 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:13:21.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:13:21.018 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:13:21.018 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:21.028 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:21.028 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:13:21.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144
17-03-17 20:13:21.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144
17-03-17 20:13:21.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144
17-03-17 20:13:21.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144
17-03-17 20:13:21.278 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:13:21.288 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:13:21.288 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:13:21.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:13:21.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:13:21.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:13:21.358 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:13:21.358 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:13:21.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28019 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-17 20:13:21.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:13:21.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:13:21.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:21.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:13:21.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:13:21.678 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:13:21.678 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:13:21.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:13:21.678 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:13:21.678 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:13:21.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:13:21.728 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:13:21.728 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:13:21.758 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 34. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:21.768 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:13:21.778 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 20:13:21.778 -07 000000610 INF: Imaging Cycle 35: ScanTilesCommand Cycle 35 time end. Duration was 161355 ms.
17-03-17 20:13:21.778 -07 000000610 INF: =================== Cycle #35 ===================
17-03-17 20:13:21.778 -07 000000610 INF: ===================  ===================
17-03-17 20:13:21.778 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:13:21.788 -07 000000486 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 20:13:21.788 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:13:21.788 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 20:13:21.788 -07 000000502 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 35, FrontChillerTemperature: 4.020806, FrontChillerHeatSinkTemperature: 0.383749, AmbientTemperature: 18.96074, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.74356, GreenLEDSensorTemperature: 26.3241, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 20:13:21.818 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.