17-03-17 20:13:21.868 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:21.868 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:13:21.868 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:13:21.878 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:21.878 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:13:21.888 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:21.888 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:21.888 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:13:21.888 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:13:21.888 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:13:21.998 -07 000000424 INF: FPGA: Recv YMVTO 154377 871
17-03-17 20:13:21.998 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 20:13:21.998 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 20:13:21.998 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:13:21.998 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 20:13:22.148 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.007176,
17-03-17 20:13:24.998 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:13:24.998 -07 000000569 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:13:25.008 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:13:25.008 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:13:25.018 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:13:25.018 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 20:13:25.018 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3147 ms
17-03-17 20:13:25.028 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 60° ===================
17-03-17 20:13:25.028 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:13:25.028 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:13:25.028 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:13:25.038 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:13:25.038 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:13:25.038 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 20:13:25.048 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:13:25.048 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 60° ===================
17-03-17 20:13:25.048 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:25.048 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:13:25.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:25.078 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:13:25.078 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:13:25.078 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:13:25.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:13:25.398 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:13:25.398 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:13:25.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:25.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:13:25.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:13:25.568 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:25.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:13:25.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:25.598 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:13:25.598 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:13:25.598 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:13:25.728 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:13:25.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:26.758 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=498, R2=513, Total=1011. Warn if over 250 bubbles per interval.
17-03-17 20:13:27.528 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.000345,
17-03-17 20:13:28.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:28.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:29.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:29.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:29.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:29.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:29.828 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:13:29.828 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:29.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:29.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:13:29.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:13:30.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:30.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:13:30.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:13:30.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:13:30.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:13:30.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:30.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:30.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:30.768 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:13:30.768 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:31.758 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 20:13:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=502, R2=517, Total=1019. Warn if over 250 bubbles per interval.
17-03-17 20:13:31.988 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:13:31.988 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:13:31.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:32.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:13:32.008 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:13:32.008 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:13:32.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:13:32.158 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:13:32.158 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:13:32.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:32.228 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:13:32.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:13:32.328 -07 000000610 INF: =================== Cycle #36, Pumping Reagent CMS (4) ===================
17-03-17 20:13:32.328 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:13:32.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:32.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:13:32.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:13:32.358 -07 000000610 INF: =================== Cycle #36, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:13:32.488 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:13:32.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:32.888 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.016692,
17-03-17 20:13:33.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:33.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:34.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:34.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:34.448 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:13:34.448 -07 000000610 INF: =================== Cycle #36, Pumping Reagent CMS (4) ===================
17-03-17 20:13:34.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:34.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:13:34.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:13:34.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:34.768 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:13:34.768 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:13:34.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:13:34.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:13:34.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:35.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:35.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:35.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:13:35.388 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:36.608 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:13:36.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:13:36.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:36.628 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:13:36.628 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:13:36.628 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:13:36.758 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 20:13:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=504, R2=517, Total=1021. Warn if over 250 bubbles per interval.
17-03-17 20:13:36.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:13:36.798 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:13:36.798 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:13:36.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:36.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:13:36.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:13:36.968 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:36.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:13:36.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:36.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:13:36.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:13:36.998 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:13:37.128 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:13:37.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:38.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:38.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:38.068 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:13:38.068 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:38.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:38.228 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:13:38.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:13:38.268 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.003063,
17-03-17 20:13:38.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:38.388 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:13:38.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:13:38.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:13:38.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:13:38.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:38.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:39.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:39.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:13:39.008 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:39.008 -07 000000458 INF: WaitCommand(10000) start
17-03-17 20:13:39.008 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:13:39.008 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:13:40.228 -07 000000382 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:13:40.228 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-17 20:13:40.258 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:13:40.258 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:13:40.388 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:13:40.428 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:41.758 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 20:13:41.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=506, R2=520, Total=1026. Warn if over 250 bubbles per interval.
17-03-17 20:13:41.958 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:41.988 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:42.408 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:42.438 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:42.438 -07 000000382 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:13:42.438 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:13:42.438 -07 000000382 INF: ===================  ===================
17-03-17 20:13:43.628 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.986717,
17-03-17 20:13:46.758 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:46.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=506, R2=520, Total=1026. Warn if over 250 bubbles per interval.
17-03-17 20:13:48.998 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.997626,
17-03-17 20:13:49.018 -07 000000458 INF: WaitCommand(10000) end
17-03-17 20:13:49.018 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:49.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:13:49.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:49.058 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:13:49.058 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:13:49.058 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:13:49.188 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:13:49.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:51.758 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:13:51.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=506, R2=521, Total=1027. Warn if over 250 bubbles per interval.
17-03-17 20:13:54.378 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.993549,
17-03-17 20:13:55.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:55.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:55.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:55.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:56.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:56.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:56.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:56.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:13:56.758 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:13:56.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=506, R2=521, Total=1027. Warn if over 250 bubbles per interval.
17-03-17 20:13:57.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:57.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:57.188 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:13:57.188 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:13:57.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:57.348 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:13:57.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:13:57.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:57.508 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:13:57.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:13:57.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:13:57.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:13:57.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:58.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:13:58.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:13:58.128 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:13:58.128 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:13:59.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:13:59.348 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:13:59.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:59.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:13:59.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:13:59.368 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:13:59.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:13:59.598 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:13:59.598 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:13:59.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:13:59.668 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:13:59.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:13:59.738 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.99219,
17-03-17 20:13:59.768 -07 000000610 INF: =================== Cycle #36, Pumping Reagent IMT (1) ===================
17-03-17 20:13:59.768 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:13:59.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:13:59.798 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:13:59.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:13:59.798 -07 000000610 INF: =================== Cycle #36, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:13:59.928 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:13:59.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:01.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:01.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:01.758 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:14:01.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:01.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:01.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:01.888 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:14:01.888 -07 000000610 INF: =================== Cycle #36, Pumping Reagent IMT (1) ===================
17-03-17 20:14:02.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:02.048 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:14:02.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:14:02.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:02.208 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:14:02.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:14:02.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:14:02.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:14:02.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:02.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:02.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:02.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:14:02.828 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:14:04.048 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:14:04.048 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:14:04.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:14:04.068 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:14:04.068 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:14:04.068 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:14:04.298 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:14:04.318 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:14:04.318 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:14:04.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:14:04.388 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:14:04.388 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:14:04.488 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:14:04.488 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:14:04.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:04.518 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:14:04.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:14:04.518 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:14:04.648 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:14:04.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:05.118 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.02213,
17-03-17 20:14:05.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:05.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:05.588 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:14:05.588 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:14:05.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:05.748 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:14:05.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:14:05.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:05.908 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:14:05.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:14:05.908 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:14:06.038 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:14:06.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:06.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:06.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:06.528 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:14:06.528 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:14:06.528 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 65° ===================
17-03-17 20:14:06.528 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:14:06.528 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:14:06.528 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:14:06.538 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:14:06.538 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:14:06.538 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 20:14:06.548 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:14:06.548 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 65° ===================
17-03-17 20:14:06.548 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:14:06.548 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:14:06.758 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:10.478 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.016692,
17-03-17 20:14:11.758 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:15.848 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.028963,
17-03-17 20:14:16.758 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:21.228 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.024884,
17-03-17 20:14:21.758 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:26.588 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.042558,
17-03-17 20:14:26.758 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:26.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:31.758 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:31.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:31.958 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.016692,
17-03-17 20:14:36.558 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:14:36.558 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:14:36.558 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:14:36.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:36.688 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:14:36.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:14:36.688 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:14:36.758 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:36.818 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:14:36.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:37.338 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.989471,
17-03-17 20:14:37.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:37.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:37.428 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:14:37.428 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:14:37.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:37.588 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:14:37.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:14:37.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:14:37.748 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:14:37.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:14:37.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:14:37.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:14:37.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:38.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:38.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:38.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:14:38.368 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:14:38.368 -07 000000623 INF: WaitCommand(30000) start
17-03-17 20:14:38.368 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:14:38.368 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:14:39.588 -07 000000512 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:14:39.588 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 20:14:39.618 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:14:39.618 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:14:39.748 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:14:39.788 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:41.758 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:42.128 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:42.158 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:14:42.578 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 20:14:42.608 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:14:42.608 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:14:42.608 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:14:42.608 -07 000000512 INF: ===================  ===================
17-03-17 20:14:42.698 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.981281,
17-03-17 20:14:46.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:48.078 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.989471,
17-03-17 20:14:51.768 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:51.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:53.438 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.004458,
17-03-17 20:14:56.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:14:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:14:58.818 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.996267,
17-03-17 20:15:01.768 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:15:04.178 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.978563,
17-03-17 20:15:06.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:06.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:15:08.378 -07 000000623 INF: WaitCommand(30000) end
17-03-17 20:15:08.378 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 22° ===================
17-03-17 20:15:08.378 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:15:08.378 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:15:08.378 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:15:08.388 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:08.388 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:15:08.388 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-17 20:15:08.398 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:08.398 -07 000000610 INF: =================== Cycle #36, Flow Cell Temp 22° ===================
17-03-17 20:15:08.398 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:15:08.398 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:15:08.398 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:15:08.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:08.428 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:15:08.428 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:15:08.428 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:15:08.558 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:15:08.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:09.548 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.98264,
17-03-17 20:15:11.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:11.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:11.768 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=507, R2=522, Total=1029. Warn if over 250 bubbles per interval.
17-03-17 20:15:12.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:12.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:12.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:12.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:12.658 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:15:12.658 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:15:12.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:12.818 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:15:12.818 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:15:12.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:12.978 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:15:12.978 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:15:12.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:15:13.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:15:13.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:13.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:13.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:13.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:15:13.598 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:15:14.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:15:14.818 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:15:14.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:14.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:15:14.838 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:15:14.838 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:15:14.918 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.003063,
17-03-17 20:15:14.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:15:15.008 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:15:15.008 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:15:15.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:15.078 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:15:15.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:15:15.178 -07 000000610 INF: =================== Cycle #36, Pumping Reagent USM (2) ===================
17-03-17 20:15:15.178 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:15:15.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:15.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:15:15.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:15:15.208 -07 000000610 INF: =================== Cycle #36, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:15:15.338 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:15:15.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:16.768 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 5
17-03-17 20:15:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=5, R2=2, Total=7. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=524, Total=1036. Warn if over 250 bubbles per interval.
17-03-17 20:15:16.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:16.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:17.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:17.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:17.298 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:15:17.298 -07 000000610 INF: =================== Cycle #36, Pumping Reagent USM (2) ===================
17-03-17 20:15:17.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:17.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:15:17.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:15:17.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:17.618 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:15:17.618 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:15:17.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:15:17.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:15:17.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:18.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:18.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:18.238 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:15:18.238 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:15:19.458 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:15:19.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:15:19.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:19.478 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:15:19.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:15:19.478 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:15:19.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:15:19.648 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:15:19.648 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:15:19.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:19.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:15:19.718 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:15:19.818 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:15:19.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:15:19.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:19.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:15:19.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:15:19.848 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:15:19.978 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:15:20.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:20.288 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.986717,
17-03-17 20:15:20.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:20.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:20.918 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:15:20.918 -07 000000610 INF: =================== Cycle #36, Pumping Reagent PR2 (3) ===================
17-03-17 20:15:21.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:21.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:15:21.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:15:21.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:15:21.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:15:21.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:15:21.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:15:21.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:15:21.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:21.768 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 0
17-03-17 20:15:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=6, Total=6. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:21.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:21.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:21.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:15:21.858 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:15:21.858 -07 000000569 INF: WaitCommand(10000) start
17-03-17 20:15:21.858 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:15:21.858 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:15:23.078 -07 000000623 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:15:23.078 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 20:15:23.108 -07 000000623 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:15:23.108 -07 000000623 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:15:23.238 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:15:23.278 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:24.808 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:24.838 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:15:25.258 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 20:15:25.288 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:15:25.288 -07 000000623 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:15:25.288 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:15:25.288 -07 000000623 INF: ===================  ===================
17-03-17 20:15:25.668 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.015368,
17-03-17 20:15:26.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:31.028 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.99219,
17-03-17 20:15:31.768 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:31.868 -07 000000569 INF: WaitCommand(10000) end
17-03-17 20:15:31.868 -07 000000610 INF: =================== Cycle #36, Imaging ===================
17-03-17 20:15:31.868 -07 000000610 INF: Imaging Cycle 36: ScanTilesCommand Cycle 36 time start.
17-03-17 20:15:31.868 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:15:31.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:31.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:15:31.898 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:15:31.898 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:15:32.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:15:32.218 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:15:32.218 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:15:32.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:15:32.288 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:15:32.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:32.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:32.288 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:15:32.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:32.288 -07 000000627 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:15:32.288 -07 000000382 INF: FPGA: Recv EXLED1ON 
17-03-17 20:15:32.298 -07 000000627 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:32.298 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:15:32.298 -07 000000458 INF: FPGA: Recv EXLED1ADCR 23155
17-03-17 20:15:32.308 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:32.308 -07 000000627 INF: RedLED: Using Red data: Photodiode ADC 23155 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 20:15:32.308 -07 000000627 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:15:32.308 -07 000000382 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:15:32.318 -07 000000627 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:32.318 -07 000000627 INF: RedLED: LED was on for 20 ms
17-03-17 20:15:32.318 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 20:15:32.318 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:15:32.318 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:32.318 -07 000000627 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:15:32.318 -07 000000618 INF: FPGA: Recv EXLED2ON 
17-03-17 20:15:32.328 -07 000000627 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:32.328 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:15:32.328 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 20:15:32.338 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:32.338 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 20:15:32.338 -07 000000627 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:15:32.338 -07 000000623 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:15:32.348 -07 000000627 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:32.348 -07 000000627 INF: GreenLED: LED was on for 20 ms
17-03-17 20:15:32.348 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:15:32.348 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:15:32.348 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 20:15:32.358 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:15:32.358 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:15:32.858 -07 000000618 INF: FPGA: Recv EMOUT
17-03-17 20:15:32.858 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:15:32.858 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:15:32.858 -07 000000458 INF: FPGA: Recv EMCUR 
17-03-17 20:15:32.868 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:32.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:32.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.12745422748849. ------
17-03-17 20:15:32.868 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:32.868 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17944 mm
17-03-17 20:15:32.868 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:32.868 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:32.868 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:15:32.868 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:15:32.878 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:32.878 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:15:32.878 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 39198, sync = True, waitForSettling = False)
17-03-17 20:15:32.878 -07 000000623 INF: Z Motor: Moving to -0.179437 mm, started at -0.127454 mm, distance = -51.98 um
17-03-17 20:15:32.878 -07 000000448 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:15:32.888 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:32.888 -07 000000623 INF: FPGA: Xmit ZDACW 39198\n [Z Motor]
17-03-17 20:15:32.888 -07 000000569 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:32.888 -07 000000569 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:15:32.888 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:15:32.888 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:15:32.898 -07 000000623 INF: FPGA: 'ZDACW 39198' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:15:32.898 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:32.908 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:15:32.918 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:32.918 -07 000000626 INF: FPGA: Recv ZDACR 39198
17-03-17 20:15:32.928 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:32.928 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:15:33.098 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:33.098 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:15:34.588 -07 000000448 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:15:34.588 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 20:15:34.588 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:15:34.588 -07 000000569 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:15:34.588 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 20:15:36.398 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.983999,
17-03-17 20:15:36.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:37.438 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:37.438 -07 000000448 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:15:37.448 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:37.448 -07 000000569 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:37.468 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:37.468 -07 000000569 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:15:37.468 -07 000000569 INF: Y Motor: Moved to 59.9106 after 4592 ms
17-03-17 20:15:37.468 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179437 mm (DAC = 39198)
17-03-17 20:15:37.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.468 -07 000000501 INF: FPGA: Recv ZSGSRD 37223
17-03-17 20:15:37.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:37.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.478 -07 000000458 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:15:37.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.488 -07 000000382 INF: FPGA: Recv ZSGSRD 37219
17-03-17 20:15:37.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.498 -07 000000569 INF: FPGA: Recv ZSGSRD 37220
17-03-17 20:15:37.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.508 -07 000000458 INF: FPGA: Recv ZSGSRD 37215
17-03-17 20:15:37.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.518 -07 000000547 INF: FPGA: Recv ZSGSRD 37222
17-03-17 20:15:37.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.528 -07 000000627 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:15:37.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.538 -07 000000501 INF: FPGA: Recv ZSGSRD 37216
17-03-17 20:15:37.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.548 -07 000000627 INF: FPGA: Recv ZSGSRD 37219
17-03-17 20:15:37.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:37.558 -07 000000501 INF: FPGA: Recv ZSGSRD 37223
17-03-17 20:15:37.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.568 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:37.568 -07 000000626 INF: FPGA: Recv ZPIEZORD 33680
17-03-17 20:15:37.578 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37221 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37221 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37215 (-178.5 uncal um), Max = 37228 (-178.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37221, posNoise = 7, negNoise = 6
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: After move to -0.179437, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: Settle wait time = 4594 ms, measure time = 105 ms (allowed 150 ms), total time = 4699 ms
17-03-17 20:15:37.578 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:15:37.628 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4755 ms
17-03-17 20:15:37.628 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:37.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:37.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:37.628 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:37.628 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:37.628 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:37.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:37.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:37.628 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:15:37.658 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:15:37.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:37.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:15:37.658 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:37.668 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:15:37.668 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:15:37.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:37.718 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:37.918 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:37.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:37.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:37.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 20:15:37.958 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:15:37.958 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:37.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:15:38.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:15:38.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:38.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:15:38.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:15:38.058 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:38.058 -07 000000502 INF: Image SNR check: start
17-03-17 20:15:38.058 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:38.068 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:38.068 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:38.068 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=66.52]
17-03-17 20:15:38.068 -07 000000502 INF: Autofocus start
17-03-17 20:15:38.068 -07 000000502 INF: MeasureProfile start
17-03-17 20:15:38.088 -07 000000502 INF: MeasureProfile done
17-03-17 20:15:38.088 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:15:38.088 -07 000000502 INF: Autofocus finished
17-03-17 20:15:38.268 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:38.268 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:38.268 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17943895213962. ----------
17-03-17 20:15:38.268 -07 000000610 INF: Cycle	36	Tile	1	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:38.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37695, sync = True, waitForSettling = True)
17-03-17 20:15:38.278 -07 000000610 INF: Z Motor: Moving to -0.172557 mm, started at -0.179439 mm, distance = 6.88 um
17-03-17 20:15:38.278 -07 000000610 INF: FPGA: Xmit ZDACW 37695\n [Z Motor]
17-03-17 20:15:38.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:15:38.288 -07 000000610 INF: FPGA: 'ZDACW 37695' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:15:38.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:38.288 -07 000000458 INF: FPGA: Recv ZDACR 37695
17-03-17 20:15:38.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:38.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.448 -07 000000512 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:15:38.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:38.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.458 -07 000000502 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:15:38.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.468 -07 000000618 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:15:38.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.478 -07 000000626 INF: FPGA: Recv ZSGSRD 36152
17-03-17 20:15:38.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36152
17-03-17 20:15:38.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.498 -07 000000478 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:15:38.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.508 -07 000000618 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:15:38.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.518 -07 000000626 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:15:38.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:15:38.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:38.538 -07 000000547 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:15:38.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:38.548 -07 000000448 INF: FPGA: Recv ZPIEZORD 32221
17-03-17 20:15:38.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:38.558 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.7 V.
17-03-17 20:15:38.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36152 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36152 (-171.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36149 (-171.7 uncal um), Max = 36154 (-171.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:15:38.558 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36152, posNoise = 2, negNoise = 3
17-03-17 20:15:38.558 -07 000000610 INF: Z Motor: After move to -0.172557, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:38.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:15:38.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:38.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:38.558 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:38.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:38.558 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:38.558 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:38.558 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:38.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:38.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:38.558 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:38.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:15:38.558 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:15:38.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:15:38.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:38.578 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:15:38.578 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:15:38.588 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:15:38.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:38.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:15:38.588 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:38.608 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:15:38.608 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-17 20:15:38.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37871 150\n [Camera]
17-03-17 20:15:38.808 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:39.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:39.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:39.218 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:39.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:39.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 20:15:39.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:39.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:39.218 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:39.328 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:39.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) start.
17-03-17 20:15:39.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37871 797
17-03-17 20:15:39.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:39.608 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:15:39.608 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:15:39.608 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:39.618 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:15:39.618 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:15:39.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:15:39.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:15:39.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:39.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:15:39.738 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 20:15:39.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:39.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:39.758 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:39.758 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:39.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:39.758 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:39.768 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:39.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 20:15:39.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:39.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:15:39.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:15:39.948 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:39.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37871 150' command took 2 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-17 20:15:39.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:39.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172571469360077. ------
17-03-17 20:15:39.958 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:39.958 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17897 mm
17-03-17 20:15:39.958 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:39.958 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:39.958 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:15:39.958 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:15:39.958 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 39096, sync = True, waitForSettling = False)
17-03-17 20:15:39.958 -07 000000382 INF: Z Motor: Moving to -0.178970 mm, started at -0.172571 mm, distance = -6.40 um
17-03-17 20:15:39.968 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:39.968 -07 000000382 INF: FPGA: Xmit ZDACW 39096\n [Z Motor]
17-03-17 20:15:39.968 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:15:39.978 -07 000000382 INF: FPGA: 'ZDACW 39096' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:15:39.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:39.978 -07 000000448 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:15:39.988 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:39.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:15:39.988 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:39.988 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:39.988 -07 000000502 INF: Y Motor: Moving 1331 steps2
17-03-17 20:15:39.998 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:39.998 -07 000000448 INF: FPGA: Recv ZDACR 39096
17-03-17 20:15:40.008 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:40.008 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:40.008 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:15:40.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:15:40.168 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:15:40.168 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:40.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:15:40.168 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:15:40.168 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:40.168 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:40.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:15:40.168 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:40.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:15:40.188 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:40.188 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:15:40.378 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:15:40.378 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 20:15:40.408 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:40.418 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:15:40.418 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:15:40.418 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:40.418 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:15:40.418 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-17 20:15:41.368 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:41.368 -07 000000547 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:15:41.378 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.378 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:41.398 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:41.398 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:15:41.398 -07 000000502 INF: Y Motor: Moved to 60.7334 after 1433 ms (table move)
17-03-17 20:15:41.398 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178970 mm (DAC = 39096)
17-03-17 20:15:41.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.398 -07 000000458 INF: FPGA: Recv ZSGSRD 37156
17-03-17 20:15:41.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:15:41.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.408 -07 000000502 INF: FPGA: Recv ZSGSRD 37148
17-03-17 20:15:41.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.418 -07 000000448 INF: FPGA: Recv ZSGSRD 37138
17-03-17 20:15:41.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.428 -07 000000502 INF: FPGA: Recv ZSGSRD 37148
17-03-17 20:15:41.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.458 -07 000000382 INF: FPGA: Recv ZSGSRD 37156
17-03-17 20:15:41.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:41.488 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.488 -07 000000448 INF: FPGA: Recv ZSGSRD 37143
17-03-17 20:15:41.498 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:41.498 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.498 -07 000000547 INF: FPGA: Recv ZSGSRD 37149
17-03-17 20:15:41.508 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:41.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.528 -07 000000502 INF: FPGA: Recv ZSGSRD 37156
17-03-17 20:15:41.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:41.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.538 -07 000000458 INF: FPGA: Recv ZSGSRD 37156
17-03-17 20:15:41.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:41.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:41.548 -07 000000502 INF: FPGA: Recv ZSGSRD 37149
17-03-17 20:15:41.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.558 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:41.558 -07 000000448 INF: FPGA: Recv ZPIEZORD 33565
17-03-17 20:15:41.568 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.966 V. Piezo Error = -8.0 V.
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37150 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37149 (-178.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37138 (-178.0 uncal um), Max = 37156 (-178.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37150, posNoise = 6, negNoise = 12
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: After move to -0.178970, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 164 ms (allowed 150 ms), total time = 1602 ms
17-03-17 20:15:41.568 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 164 ms, longer than max expected time of 150 ms
17-03-17 20:15:41.568 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:15:41.568 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:41.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:41.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:41.568 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:41.568 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:41.568 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:41.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:41.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:41.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:41.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:15:41.578 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:41.588 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:15:41.588 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:15:41.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:41.638 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:41.768 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.011254,
17-03-17 20:15:41.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:41.838 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:41.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:41.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:41.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 20:15:41.878 -07 000000547 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:15:41.878 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:41.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 286 ms overall
17-03-17 20:15:41.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:15:41.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:41.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:15:41.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:15:41.978 -07 000000547 INF: Autofocus start
17-03-17 20:15:41.978 -07 000000547 INF: MeasureProfile start
17-03-17 20:15:41.978 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:41.988 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:41.988 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:41.988 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:41.988 -07 000000547 INF: MeasureProfile done
17-03-17 20:15:41.988 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:15:41.988 -07 000000547 INF: Autofocus finished
17-03-17 20:15:42.188 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:42.188 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:42.188 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178982833077555. ----------
17-03-17 20:15:42.198 -07 000000610 INF: Cycle	36	Tile	2	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:42.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37611, sync = True, waitForSettling = True)
17-03-17 20:15:42.198 -07 000000610 INF: Z Motor: Moving to -0.172172 mm, started at -0.178983 mm, distance = 6.81 um
17-03-17 20:15:42.198 -07 000000610 INF: FPGA: Xmit ZDACW 37611\n [Z Motor]
17-03-17 20:15:42.198 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:15:42.208 -07 000000610 INF: FPGA: 'ZDACW 37611' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:42.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:42.208 -07 000000547 INF: FPGA: Recv ZDACR 37611
17-03-17 20:15:42.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:42.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.368 -07 000000618 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:15:42.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:42.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.378 -07 000000382 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:15:42.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.388 -07 000000626 INF: FPGA: Recv ZSGSRD 36088
17-03-17 20:15:42.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.398 -07 000000502 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:15:42.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.408 -07 000000618 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:15:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.418 -07 000000382 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:15:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.428 -07 000000626 INF: FPGA: Recv ZSGSRD 36088
17-03-17 20:15:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.438 -07 000000458 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:15:42.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.448 -07 000000618 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:15:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:42.458 -07 000000458 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:15:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:42.468 -07 000000448 INF: FPGA: Recv ZPIEZORD 32140
17-03-17 20:15:42.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:42.478 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-17 20:15:42.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36091 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36091 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36088 (-171.3 uncal um), Max = 36096 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:15:42.478 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36091, posNoise = 5, negNoise = 3
17-03-17 20:15:42.478 -07 000000610 INF: Z Motor: After move to -0.172172, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:42.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:15:42.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:42.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:42.478 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:42.478 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:42.478 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:42.478 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:42.478 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:42.478 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:42.478 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:42.478 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:42.478 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:15:42.478 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:42.488 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:15:42.488 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:42.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:15:42.488 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:42.498 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:15:42.498 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:15:42.498 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:15:42.498 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:15:42.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37788 150\n [Camera]
17-03-17 20:15:42.698 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:43.118 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:43.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:43.118 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:43.118 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:43.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) start.
17-03-17 20:15:43.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:43.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:43.118 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:43.118 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:43.118 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) start.
17-03-17 20:15:43.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37788 797
17-03-17 20:15:43.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:43.518 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:15:43.518 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:15:43.518 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:43.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:15:43.518 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:15:43.518 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:43.518 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:43.518 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:15:43.528 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:43.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:15:43.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:43.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:43.658 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:43.658 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:43.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:15:43.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:43.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:43.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:43.778 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:43.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:15:43.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:15:43.848 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:43.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37788 150' command took 2 ms to send, 1334 ms to get response, and 1344 ms overall
17-03-17 20:15:43.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:43.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.17217959241943. ------
17-03-17 20:15:43.858 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:43.858 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17886 mm
17-03-17 20:15:43.858 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:43.858 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:15:43.858 -07 000000448 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:15:43.858 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39071, sync = True, waitForSettling = False)
17-03-17 20:15:43.858 -07 000000618 INF: Z Motor: Moving to -0.178856 mm, started at -0.172180 mm, distance = -6.68 um
17-03-17 20:15:43.858 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:43.868 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:15:43.868 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:43.868 -07 000000478 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:15:43.878 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:15:43.878 -07 000000448 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:43.878 -07 000000448 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:43.878 -07 000000448 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:15:43.878 -07 000000618 INF: FPGA: Xmit ZDACW 39071\n [Z Motor]
17-03-17 20:15:43.878 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:15:43.888 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:43.888 -07 000000618 INF: FPGA: 'ZDACW 39071' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:15:43.898 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:43.908 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:43.908 -07 000000478 INF: FPGA: Recv ZDACR 39071
17-03-17 20:15:43.918 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:43.918 -07 000000618 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 20:15:44.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:15:44.058 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:15:44.058 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:44.058 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:15:44.058 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:15:44.088 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:44.088 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:15:44.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:15:44.158 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:15:44.158 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:44.168 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:44.168 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 20:15:44.268 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:15:44.268 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:15:44.308 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:44.308 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:15:44.318 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:44.318 -07 000000448 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:44.318 -07 000000448 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:15:44.318 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 20:15:45.268 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:45.268 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:15:45.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:45.278 -07 000000448 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:45.298 -07 000000448 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:45.298 -07 000000448 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:15:45.298 -07 000000448 INF: Y Motor: Moved to 61.5640 after 1438 ms (table move)
17-03-17 20:15:45.298 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178856 mm (DAC = 39071)
17-03-17 20:15:45.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.308 -07 000000547 INF: FPGA: Recv ZSGSRD 37136
17-03-17 20:15:45.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:15:45.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.308 -07 000000448 INF: FPGA: Recv ZSGSRD 37133
17-03-17 20:15:45.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.318 -07 000000626 INF: FPGA: Recv ZSGSRD 37122
17-03-17 20:15:45.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.328 -07 000000618 INF: FPGA: Recv ZSGSRD 37128
17-03-17 20:15:45.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.338 -07 000000626 INF: FPGA: Recv ZSGSRD 37136
17-03-17 20:15:45.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.348 -07 000000478 INF: FPGA: Recv ZSGSRD 37135
17-03-17 20:15:45.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.358 -07 000000626 INF: FPGA: Recv ZSGSRD 37135
17-03-17 20:15:45.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.368 -07 000000448 INF: FPGA: Recv ZSGSRD 37128
17-03-17 20:15:45.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.378 -07 000000382 INF: FPGA: Recv ZSGSRD 37123
17-03-17 20:15:45.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:45.388 -07 000000448 INF: FPGA: Recv ZSGSRD 37126
17-03-17 20:15:45.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.398 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:45.398 -07 000000382 INF: FPGA: Recv ZPIEZORD 33558
17-03-17 20:15:45.408 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37130 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37130 (-178.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37122 (-177.9 uncal um), Max = 37136 (-178.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37130, posNoise = 6, negNoise = 8
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: After move to -0.178856, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:15:45.408 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:15:45.458 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:15:45.458 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:45.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:45.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:45.458 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:45.458 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:45.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:45.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:45.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:45.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:45.468 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:15:45.468 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:45.468 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:15:45.468 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:15:45.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:45.518 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:45.718 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:45.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:45.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:45.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:15:45.758 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:15:45.758 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:45.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:15:45.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:15:45.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:45.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:15:45.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:15:45.858 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:45.858 -07 000000448 INF: Autofocus start
17-03-17 20:15:45.858 -07 000000448 INF: MeasureProfile start
17-03-17 20:15:45.858 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:45.868 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:45.868 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:45.878 -07 000000448 INF: MeasureProfile done
17-03-17 20:15:45.878 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:15:45.878 -07 000000448 INF: Autofocus finished
17-03-17 20:15:46.068 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:46.068 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:46.068 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178854348834719. ----------
17-03-17 20:15:46.068 -07 000000610 INF: Cycle	36	Tile	3	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:46.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-17 20:15:46.078 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.178854 mm, distance = 6.88 um
17-03-17 20:15:46.078 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-17 20:15:46.078 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:15:46.088 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:15:46.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:46.088 -07 000000547 INF: FPGA: Recv ZDACR 37568
17-03-17 20:15:46.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36060
17-03-17 20:15:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:46.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:15:46.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36057
17-03-17 20:15:46.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36059
17-03-17 20:15:46.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36060
17-03-17 20:15:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.298 -07 000000382 INF: FPGA: Recv ZSGSRD 36066
17-03-17 20:15:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36062
17-03-17 20:15:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36061
17-03-17 20:15:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.328 -07 000000618 INF: FPGA: Recv ZSGSRD 36065
17-03-17 20:15:46.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:46.338 -07 000000547 INF: FPGA: Recv ZSGSRD 36064
17-03-17 20:15:46.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:46.348 -07 000000502 INF: FPGA: Recv ZPIEZORD 32155
17-03-17 20:15:46.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:46.358 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.6 V.
17-03-17 20:15:46.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36062 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36062 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36057 (-171.1 uncal um), Max = 36067 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:15:46.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36062, posNoise = 5, negNoise = 5
17-03-17 20:15:46.358 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:46.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:15:46.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:46.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:46.358 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:46.358 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:46.358 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:46.358 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:46.358 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:46.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:46.358 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:46.358 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:46.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:15:46.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:46.368 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:15:46.368 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:46.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:15:46.368 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:46.368 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:15:46.368 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:15:46.378 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:15:46.378 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:15:46.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37745 150\n [Camera]
17-03-17 20:15:46.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:46.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:46.988 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:46.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:46.988 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:46.988 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:46.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:46.998 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:46.998 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1427326168, 0x0, 391868352) start.
17-03-17 20:15:46.998 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:46.998 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:46.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:15:47.158 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.981281,
17-03-17 20:15:47.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37745 800
17-03-17 20:15:47.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:47.368 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1427326168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:15:47.368 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:15:47.368 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:47.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:15:47.368 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:15:47.368 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:47.378 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:47.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:15:47.378 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:47.378 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:15:47.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:47.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:47.528 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:47.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:47.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:47.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:47.638 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:47.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:15:47.638 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:47.648 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:15:47.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:15:47.718 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:47.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37745 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-17 20:15:47.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:47.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171993290267319. ------
17-03-17 20:15:47.728 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:47.728 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17792 mm
17-03-17 20:15:47.728 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:47.728 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:15:47.728 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:15:47.728 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38866, sync = True, waitForSettling = False)
17-03-17 20:15:47.728 -07 000000569 INF: Z Motor: Moving to -0.177917 mm, started at -0.171993 mm, distance = -5.92 um
17-03-17 20:15:47.728 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:47.738 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:47.738 -07 000000569 INF: FPGA: Xmit ZDACW 38866\n [Z Motor]
17-03-17 20:15:47.738 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:15:47.748 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:47.748 -07 000000569 INF: FPGA: 'ZDACW 38866' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:15:47.748 -07 000000502 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:15:47.758 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:47.758 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:15:47.758 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:47.758 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:47.758 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:15:47.768 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:47.768 -07 000000478 INF: FPGA: Recv ZDACR 38866
17-03-17 20:15:47.778 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:47.778 -07 000000569 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:15:47.778 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:47.958 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:47.958 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:15:48.038 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:15:48.038 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:15:48.038 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:48.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:15:48.038 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:15:48.038 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:48.038 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:48.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:48.048 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 20:15:48.048 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 20:15:48.158 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:15:48.158 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 20:15:48.188 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:48.198 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:15:48.198 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:15:48.198 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:48.198 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:15:48.198 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 20:15:49.148 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:49.148 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:15:49.158 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:49.158 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:49.178 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:49.178 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:15:49.178 -07 000000626 INF: Y Motor: Moved to 62.3955 after 1446 ms (table move)
17-03-17 20:15:49.178 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177917 mm (DAC = 38866)
17-03-17 20:15:49.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36990
17-03-17 20:15:49.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:15:49.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36993
17-03-17 20:15:49.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:49.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.198 -07 000000478 INF: FPGA: Recv ZSGSRD 36980
17-03-17 20:15:49.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.208 -07 000000382 INF: FPGA: Recv ZSGSRD 36979
17-03-17 20:15:49.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36988
17-03-17 20:15:49.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36994
17-03-17 20:15:49.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36991
17-03-17 20:15:49.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.248 -07 000000618 INF: FPGA: Recv ZSGSRD 36988
17-03-17 20:15:49.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36989
17-03-17 20:15:49.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:49.268 -07 000000458 INF: FPGA: Recv ZSGSRD 36983
17-03-17 20:15:49.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.278 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:49.278 -07 000000478 INF: FPGA: Recv ZPIEZORD 33366
17-03-17 20:15:49.288 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.0 V.
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36988 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36988 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36979 (-177.0 uncal um), Max = 36994 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36988, posNoise = 6, negNoise = 9
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: After move to -0.177917, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:15:49.288 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:15:49.338 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:15:49.338 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:49.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:49.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:49.338 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:49.338 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:49.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:49.338 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:49.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:49.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:49.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:15:49.348 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:49.348 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:15:49.348 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:15:49.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:49.398 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:49.598 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:49.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:49.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:49.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:15:49.638 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:15:49.638 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:49.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 286 ms overall
17-03-17 20:15:49.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:15:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:15:49.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:15:49.738 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:49.738 -07 000000618 INF: Autofocus start
17-03-17 20:15:49.738 -07 000000618 INF: MeasureProfile start
17-03-17 20:15:49.738 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:49.748 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:49.748 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:49.758 -07 000000618 INF: MeasureProfile done
17-03-17 20:15:49.758 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:15:49.758 -07 000000618 INF: Autofocus finished
17-03-17 20:15:49.948 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:49.948 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:49.948 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177942110710589. ----------
17-03-17 20:15:49.948 -07 000000610 INF: Cycle	36	Tile	4	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:49.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37381, sync = True, waitForSettling = True)
17-03-17 20:15:49.958 -07 000000610 INF: Z Motor: Moving to -0.171119 mm, started at -0.177942 mm, distance = 6.82 um
17-03-17 20:15:49.958 -07 000000610 INF: FPGA: Xmit ZDACW 37381\n [Z Motor]
17-03-17 20:15:49.958 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:15:49.968 -07 000000610 INF: FPGA: 'ZDACW 37381' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:49.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:49.968 -07 000000458 INF: FPGA: Recv ZDACR 37381
17-03-17 20:15:49.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:49.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.128 -07 000000623 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:15:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.138 -07 000000458 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:15:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.148 -07 000000618 INF: FPGA: Recv ZSGSRD 35927
17-03-17 20:15:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.158 -07 000000458 INF: FPGA: Recv ZSGSRD 35929
17-03-17 20:15:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.168 -07 000000382 INF: FPGA: Recv ZSGSRD 35927
17-03-17 20:15:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35937
17-03-17 20:15:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.188 -07 000000618 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:15:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.198 -07 000000458 INF: FPGA: Recv ZSGSRD 35926
17-03-17 20:15:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.208 -07 000000382 INF: FPGA: Recv ZSGSRD 35931
17-03-17 20:15:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:50.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35923
17-03-17 20:15:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:50.228 -07 000000627 INF: FPGA: Recv ZPIEZORD 31966
17-03-17 20:15:50.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:50.238 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -8.8 V.
17-03-17 20:15:50.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35928 (-170.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35917 (-170.2 uncal um), Max = 35937 (-170.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:15:50.238 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 9, negNoise = 11
17-03-17 20:15:50.238 -07 000000610 INF: Z Motor: After move to -0.171119, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:50.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:15:50.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:50.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:50.238 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:50.238 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:50.238 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:50.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:50.238 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:50.238 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:50.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:15:50.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:50.238 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:50.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:50.248 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:15:50.248 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:50.248 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:15:50.248 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:50.258 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:15:50.258 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:15:50.258 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:15:50.258 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:15:50.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37558 150\n [Camera]
17-03-17 20:15:50.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:50.868 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:50.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:50.868 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:50.868 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:50.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:50.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:50.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:50.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1427326168, 0x0, 391868352) start.
17-03-17 20:15:50.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:50.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:15:51.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37558 797
17-03-17 20:15:51.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:51.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1427326168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:15:51.258 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:15:51.258 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:51.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:15:51.258 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:15:51.258 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:51.258 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:51.258 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:15:51.268 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:51.268 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:15:51.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:51.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:51.408 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:51.408 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:51.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:15:51.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:51.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:51.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:51.418 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:51.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:15:51.598 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:15:51.598 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:51.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37558 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-17 20:15:51.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:51.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171132445840323. ------
17-03-17 20:15:51.608 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17756 mm
17-03-17 20:15:51.608 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:51.608 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:51.608 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:15:51.608 -07 000000458 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:15:51.608 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:51.608 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38788, sync = True, waitForSettling = False)
17-03-17 20:15:51.608 -07 000000618 INF: Z Motor: Moving to -0.177560 mm, started at -0.171132 mm, distance = -6.43 um
17-03-17 20:15:51.618 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:51.618 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:51.618 -07 000000415 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:15:51.628 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:15:51.628 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:51.628 -07 000000458 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:51.628 -07 000000458 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:51.628 -07 000000458 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:15:51.638 -07 000000618 INF: FPGA: Xmit ZDACW 38788\n [Z Motor]
17-03-17 20:15:51.638 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:15:51.648 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:51.648 -07 000000618 INF: FPGA: 'ZDACW 38788' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:15:51.658 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:51.658 -07 000000512 INF: FPGA: Recv ZDACR 38788
17-03-17 20:15:51.668 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:15:51.668 -07 000000618 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:15:51.768 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:51.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:51.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:15:51.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:15:51.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:51.818 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:15:51.818 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:15:51.818 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:51.818 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:51.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:15:51.818 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:15:51.828 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:51.828 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:15:51.828 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:15:52.018 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:15:52.018 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:15:52.058 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:52.058 -07 000000448 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:15:52.068 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:52.068 -07 000000458 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:52.068 -07 000000458 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:15:52.068 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 20:15:52.538 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.977204,
17-03-17 20:15:53.018 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:53.018 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:15:53.028 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:53.028 -07 000000458 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:53.048 -07 000000458 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:53.048 -07 000000458 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:15:53.048 -07 000000458 INF: Y Motor: Moved to 63.2241 after 1433 ms (table move)
17-03-17 20:15:53.048 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177560 mm (DAC = 38788)
17-03-17 20:15:53.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.048 -07 000000458 INF: FPGA: Recv ZSGSRD 36928
17-03-17 20:15:53.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:15:53.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.058 -07 000000618 INF: FPGA: Recv ZSGSRD 36923
17-03-17 20:15:53.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.068 -07 000000618 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:15:53.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.078 -07 000000618 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:15:53.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.088 -07 000000448 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:15:53.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.098 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36929
17-03-17 20:15:53.108 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.108 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36929
17-03-17 20:15:53.118 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.118 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.118 -07 000000618 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:15:53.128 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.128 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.128 -07 000000618 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:15:53.138 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.138 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:53.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36921
17-03-17 20:15:53.148 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.148 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:53.148 -07 000000618 INF: FPGA: Recv ZPIEZORD 33303
17-03-17 20:15:53.158 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.0 V.
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36927 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36929 (-176.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36918 (-176.6 uncal um), Max = 36932 (-176.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36927, posNoise = 5, negNoise = 9
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: After move to -0.177560, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:15:53.158 -07 000000623 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:15:53.208 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:15:53.208 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:53.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:53.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:53.208 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:53.208 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:53.208 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:53.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:53.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:15:53.208 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:53.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:15:53.218 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:53.228 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:15:53.228 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:15:53.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:53.278 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:53.478 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:53.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:53.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:53.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) start.
17-03-17 20:15:53.518 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:15:53.518 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:53.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:15:53.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:15:53.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:53.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:15:53.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:15:53.618 -07 000000448 INF: Autofocus start
17-03-17 20:15:53.618 -07 000000448 INF: MeasureProfile start
17-03-17 20:15:53.618 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:53.618 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:53.628 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:53.628 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:53.628 -07 000000448 INF: MeasureProfile done
17-03-17 20:15:53.628 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:15:53.628 -07 000000448 INF: Autofocus finished
17-03-17 20:15:53.828 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:53.828 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:53.828 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177550233769942. ----------
17-03-17 20:15:53.838 -07 000000610 INF: Cycle	36	Tile	5	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:53.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37285, sync = True, waitForSettling = True)
17-03-17 20:15:53.838 -07 000000610 INF: Z Motor: Moving to -0.170680 mm, started at -0.177550 mm, distance = 6.87 um
17-03-17 20:15:53.838 -07 000000610 INF: FPGA: Xmit ZDACW 37285\n [Z Motor]
17-03-17 20:15:53.838 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:15:53.848 -07 000000610 INF: FPGA: 'ZDACW 37285' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:53.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:53.848 -07 000000458 INF: FPGA: Recv ZDACR 37285
17-03-17 20:15:53.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:53.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35860
17-03-17 20:15:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.018 -07 000000478 INF: FPGA: Recv ZSGSRD 35862
17-03-17 20:15:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:15:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.038 -07 000000448 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:15:54.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35861
17-03-17 20:15:54.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35853
17-03-17 20:15:54.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35858
17-03-17 20:15:54.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35859
17-03-17 20:15:54.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35853
17-03-17 20:15:54.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:54.098 -07 000000478 INF: FPGA: Recv ZSGSRD 35861
17-03-17 20:15:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:54.108 -07 000000618 INF: FPGA: Recv ZPIEZORD 31873
17-03-17 20:15:54.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:54.118 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -8.8 V.
17-03-17 20:15:54.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35858 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35858 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35853 (-169.8 uncal um), Max = 35862 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:15:54.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35858, posNoise = 4, negNoise = 5
17-03-17 20:15:54.118 -07 000000610 INF: Z Motor: After move to -0.170680, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:54.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:15:54.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:54.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:54.118 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:54.118 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:54.118 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:54.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:54.118 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:54.118 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:54.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:15:54.118 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:54.118 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:15:54.118 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:54.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:15:54.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:54.128 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:15:54.128 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:54.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:15:54.138 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:15:54.138 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:15:54.138 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:15:54.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37462 150\n [Camera]
17-03-17 20:15:54.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:54.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:54.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:54.748 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:54.748 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:54.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1066012720, 0x0, 391868352) start.
17-03-17 20:15:54.758 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:54.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:54.758 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:54.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:54.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:15:54.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37462 797
17-03-17 20:15:55.088 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:55.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1066012720, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:15:55.138 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:15:55.138 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:55.138 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:55.138 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:15:55.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:15:55.258 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:15:55.258 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:55.258 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:55.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 20:15:55.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:55.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:55.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:55.298 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:55.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:55.298 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:55.298 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:55.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:15:55.298 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:55.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:15:55.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:15:55.488 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:55.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37462 150' command took 2 ms to send, 1343 ms to get response, and 1347 ms overall
17-03-17 20:15:55.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:55.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170682750990399. ------
17-03-17 20:15:55.488 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:55.488 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17714 mm
17-03-17 20:15:55.488 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:55.498 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:55.498 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:15:55.498 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:55.498 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:15:55.498 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:15:55.498 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38696, sync = True, waitForSettling = False)
17-03-17 20:15:55.498 -07 000000547 INF: Z Motor: Moving to -0.177139 mm, started at -0.170683 mm, distance = -6.46 um
17-03-17 20:15:55.508 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:55.508 -07 000000448 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:15:55.518 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:15:55.518 -07 000000547 INF: FPGA: Xmit ZDACW 38696\n [Z Motor]
17-03-17 20:15:55.518 -07 000000626 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:55.518 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:15:55.518 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:55.518 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:15:55.528 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:55.528 -07 000000547 INF: FPGA: 'ZDACW 38696' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:15:55.538 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:55.538 -07 000000448 INF: FPGA: Recv ZDACR 38696
17-03-17 20:15:55.548 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:15:55.548 -07 000000547 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:15:55.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:15:55.688 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:15:55.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:55.688 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:15:55.688 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:15:55.688 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:55.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:55.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:15:55.698 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:15:55.698 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:55.698 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:15:55.698 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:15:55.898 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:15:55.898 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:15:55.938 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:55.938 -07 000000623 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:15:55.948 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:15:55.948 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:55.948 -07 000000626 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:15:55.948 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.184 mm/sec
17-03-17 20:15:56.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:15:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:15:56.898 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:56.898 -07 000000448 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:15:56.908 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:15:56.908 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:56.928 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:15:56.928 -07 000000626 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:15:56.928 -07 000000626 INF: Y Motor: Moved to 64.0571 after 1426 ms (table move)
17-03-17 20:15:56.928 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177139 mm (DAC = 38696)
17-03-17 20:15:56.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.928 -07 000000623 INF: FPGA: Recv ZSGSRD 36866
17-03-17 20:15:56.938 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:56.938 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.938 -07 000000478 INF: FPGA: Recv ZSGSRD 36855
17-03-17 20:15:56.948 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.948 -07 000000618 INF: FPGA: Recv ZSGSRD 36867
17-03-17 20:15:56.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.958 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.958 -07 000000478 INF: FPGA: Recv ZSGSRD 36868
17-03-17 20:15:56.968 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.968 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.968 -07 000000448 INF: FPGA: Recv ZSGSRD 36864
17-03-17 20:15:56.978 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.978 -07 000000626 INF: FPGA: Recv ZSGSRD 36866
17-03-17 20:15:56.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.988 -07 000000448 INF: FPGA: Recv ZSGSRD 36864
17-03-17 20:15:56.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:56.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:56.998 -07 000000626 INF: FPGA: Recv ZSGSRD 36863
17-03-17 20:15:57.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36857
17-03-17 20:15:57.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.018 -07 000000618 INF: FPGA: Recv ZSGSRD 36862
17-03-17 20:15:57.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.028 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:57.028 -07 000000626 INF: FPGA: Recv ZPIEZORD 33216
17-03-17 20:15:57.038 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.1 V.
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36863 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36868 (-176.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36863, posNoise = 5, negNoise = 8
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: After move to -0.177139, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:15:57.038 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:15:57.088 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:15:57.088 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:15:57.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:57.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:57.088 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:57.088 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:15:57.088 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:57.088 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:57.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:57.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:15:57.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:15:57.098 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:15:57.108 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:15:57.108 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:15:57.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:15:57.158 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:15:57.358 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:15:57.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:15:57.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:15:57.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:15:57.398 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:15:57.398 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:15:57.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:15:57.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:15:57.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:57.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:15:57.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:15:57.498 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:57.498 -07 000000478 INF: Autofocus start
17-03-17 20:15:57.498 -07 000000478 INF: MeasureProfile start
17-03-17 20:15:57.498 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:57.508 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:15:57.508 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:15:57.518 -07 000000478 INF: MeasureProfile done
17-03-17 20:15:57.518 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:15:57.518 -07 000000478 INF: Autofocus finished
17-03-17 20:15:57.708 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:15:57.708 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:15:57.708 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177139084192869. ----------
17-03-17 20:15:57.708 -07 000000610 INF: Cycle	36	Tile	6	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:15:57.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37211, sync = True, waitForSettling = True)
17-03-17 20:15:57.718 -07 000000610 INF: Z Motor: Moving to -0.170341 mm, started at -0.177139 mm, distance = 6.80 um
17-03-17 20:15:57.718 -07 000000610 INF: FPGA: Xmit ZDACW 37211\n [Z Motor]
17-03-17 20:15:57.718 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:15:57.728 -07 000000610 INF: FPGA: 'ZDACW 37211' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:57.728 -07 000000478 INF: FPGA: Recv ZDACR 37211
17-03-17 20:15:57.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:15:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.898 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.974486,
17-03-17 20:15:57.898 -07 000000478 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:15:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:15:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:15:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:15:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35805
17-03-17 20:15:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:15:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.958 -07 000000448 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:15:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35808
17-03-17 20:15:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:15:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.988 -07 000000618 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:15:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:57.998 -07 000000547 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:15:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:58.008 -07 000000448 INF: FPGA: Recv ZSGSRD 35806
17-03-17 20:15:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:58.018 -07 000000547 INF: FPGA: Recv ZSGSRD 35806
17-03-17 20:15:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:15:58.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:15:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:58.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:15:58.038 -07 000000478 INF: FPGA: Recv ZPIEZORD 31816
17-03-17 20:15:58.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:15:58.048 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.8 V.
17-03-17 20:15:58.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35806 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35807 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35801 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:15:58.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35806, posNoise = 5, negNoise = 5
17-03-17 20:15:58.048 -07 000000610 INF: Z Motor: After move to -0.170341, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:15:58.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 20:15:58.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:15:58.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:15:58.048 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:15:58.048 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:15:58.048 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:15:58.048 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:15:58.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:15:58.048 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:15:58.048 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:15:58.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:15:58.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:15:58.048 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:15:58.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:15:58.048 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:15:58.058 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:15:58.058 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:15:58.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:15:58.058 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:15:58.068 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:15:58.068 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:15:58.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37388 150\n [Camera]
17-03-17 20:15:58.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:15:58.678 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:15:58.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:15:58.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:58.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:58.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) start.
17-03-17 20:15:58.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:15:58.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:15:58.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:58.838 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:58.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:15:58.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37388 797
17-03-17 20:15:59.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:15:59.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:15:59.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:15:59.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:59.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:59.068 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:15:59.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:15:59.208 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:15:59.208 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:59.208 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:59.218 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 20:15:59.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:15:59.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:15:59.218 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:15:59.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:15:59.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:15:59.228 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:15:59.228 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:15:59.228 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:15:59.238 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:15:59.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) start.
17-03-17 20:15:59.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:15:59.408 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:15:59.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37388 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall
17-03-17 20:15:59.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:15:59.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170348691959028. ------
17-03-17 20:15:59.418 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:15:59.418 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17680 mm
17-03-17 20:15:59.418 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:15:59.418 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:15:59.418 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:15:59.418 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:15:59.418 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38623, sync = True, waitForSettling = False)
17-03-17 20:15:59.418 -07 000000618 INF: Z Motor: Moving to -0.176805 mm, started at -0.170349 mm, distance = -6.46 um
17-03-17 20:15:59.428 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:59.428 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:15:59.428 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:15:59.438 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:15:59.438 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:59.438 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:15:59.438 -07 000000512 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:15:59.438 -07 000000618 INF: FPGA: Xmit ZDACW 38623\n [Z Motor]
17-03-17 20:15:59.438 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:15:59.448 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:15:59.448 -07 000000618 INF: FPGA: 'ZDACW 38623' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:15:59.458 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:15:59.468 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:15:59.468 -07 000000501 INF: FPGA: Recv ZDACR 38623
17-03-17 20:15:59.478 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:15:59.478 -07 000000618 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:15:59.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:15:59.618 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:15:59.618 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:59.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:15:59.618 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:15:59.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:15:59.618 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:59.618 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:15:59.628 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:15:59.628 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:15:59.648 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:15:59.648 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:15:59.828 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:15:59.838 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:15:59.868 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:15:59.868 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:15:59.878 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:15:59.878 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:15:59.878 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:15:59.878 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.089 mm/sec
17-03-17 20:16:00.828 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:00.828 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:16:00.838 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:00.838 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:00.858 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:00.858 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:00.858 -07 000000512 INF: Y Motor: Moved to 64.8789 after 1435 ms (table move)
17-03-17 20:16:00.858 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176805 mm (DAC = 38623)
17-03-17 20:16:00.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.858 -07 000000626 INF: FPGA: Recv ZSGSRD 36818
17-03-17 20:16:00.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:00.868 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36808
17-03-17 20:16:00.878 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.878 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.878 -07 000000458 INF: FPGA: Recv ZSGSRD 36813
17-03-17 20:16:00.888 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.888 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36808
17-03-17 20:16:00.898 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.898 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.898 -07 000000502 INF: FPGA: Recv ZSGSRD 36818
17-03-17 20:16:00.908 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.908 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36816
17-03-17 20:16:00.918 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.918 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.918 -07 000000627 INF: FPGA: Recv ZSGSRD 36814
17-03-17 20:16:00.928 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.928 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.928 -07 000000458 INF: FPGA: Recv ZSGSRD 36813
17-03-17 20:16:00.938 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.938 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.938 -07 000000502 INF: FPGA: Recv ZSGSRD 36804
17-03-17 20:16:00.948 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:00.948 -07 000000501 INF: FPGA: Recv ZSGSRD 36810
17-03-17 20:16:00.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.958 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:00.958 -07 000000458 INF: FPGA: Recv ZPIEZORD 33157
17-03-17 20:16:00.968 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.1 V.
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36812 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36813 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36804 (-175.9 uncal um), Max = 36818 (-176.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36812, posNoise = 6, negNoise = 8
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: After move to -0.176805, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:16:00.968 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:01.018 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:16:01.018 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:01.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:01.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:01.018 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:01.018 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:01.018 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:01.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:01.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:01.018 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:01.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:01.028 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:01.038 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:01.038 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:16:01.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:01.088 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:01.288 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:01.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:01.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:01.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:16:01.328 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:01.328 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:01.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:16:01.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:16:01.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:01.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:01.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:16:01.428 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:01.428 -07 000000502 INF: Autofocus start
17-03-17 20:16:01.428 -07 000000502 INF: MeasureProfile start
17-03-17 20:16:01.428 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:01.438 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:01.438 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:01.438 -07 000000502 INF: MeasureProfile done
17-03-17 20:16:01.438 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:16:01.438 -07 000000502 INF: Autofocus finished
17-03-17 20:16:01.638 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:01.638 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:16:01.638 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176811449373639. ----------
17-03-17 20:16:01.638 -07 000000610 INF: Cycle	36	Tile	7	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:01.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37155, sync = True, waitForSettling = True)
17-03-17 20:16:01.648 -07 000000610 INF: Z Motor: Moving to -0.170085 mm, started at -0.176811 mm, distance = 6.73 um
17-03-17 20:16:01.648 -07 000000610 INF: FPGA: Xmit ZDACW 37155\n [Z Motor]
17-03-17 20:16:01.648 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:16:01.658 -07 000000610 INF: FPGA: 'ZDACW 37155' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:01.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:01.658 -07 000000626 INF: FPGA: Recv ZDACR 37155
17-03-17 20:16:01.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:01.768 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.818 -07 000000458 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:16:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:01.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:16:01.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.838 -07 000000478 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:16:01.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:16:01.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.858 -07 000000478 INF: FPGA: Recv ZSGSRD 35768
17-03-17 20:16:01.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35760
17-03-17 20:16:01.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.878 -07 000000458 INF: FPGA: Recv ZSGSRD 35770
17-03-17 20:16:01.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:16:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.898 -07 000000627 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:16:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:01.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:16:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:01.918 -07 000000502 INF: FPGA: Recv ZPIEZORD 31748
17-03-17 20:16:01.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:01.928 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -8.9 V.
17-03-17 20:16:01.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35766 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35767 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35760 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:01.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35766, posNoise = 4, negNoise = 6
17-03-17 20:16:01.928 -07 000000610 INF: Z Motor: After move to -0.170085, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:01.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:16:01.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:01.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:01.928 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:01.928 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:01.928 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:01.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:01.928 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:01.928 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:01.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:01.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:01.928 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:01.928 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:01.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:01.938 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:01.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:01.938 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:01.948 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:16:01.948 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:01.948 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:16:01.948 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:16:01.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37332 150\n [Camera]
17-03-17 20:16:02.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:02.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:02.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:02.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:02.568 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:02.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:16:02.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:02.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:02.568 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:02.568 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:02.568 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) start.
17-03-17 20:16:02.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37332 797
17-03-17 20:16:02.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:02.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:16:02.948 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:16:02.948 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:02.948 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:02.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:16:02.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:16:02.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:02.948 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:02.958 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:16:02.958 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:16:03.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:03.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:03.108 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:03.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:03.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:03.228 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:03.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:03.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:16:03.228 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:03.228 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:16:03.298 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.989471,
17-03-17 20:16:03.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:16:03.298 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:03.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37332 150' command took 2 ms to send, 1334 ms to get response, and 1344 ms overall
17-03-17 20:16:03.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:03.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170091723473357. ------
17-03-17 20:16:03.308 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17653 mm
17-03-17 20:16:03.308 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:03.308 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:16:03.308 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:16:03.308 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38563, sync = True, waitForSettling = False)
17-03-17 20:16:03.308 -07 000000502 INF: Z Motor: Moving to -0.176530 mm, started at -0.170092 mm, distance = -6.44 um
17-03-17 20:16:03.318 -07 000000502 INF: FPGA: Xmit ZDACW 38563\n [Z Motor]
17-03-17 20:16:03.318 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:16:03.328 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:03.328 -07 000000502 INF: FPGA: 'ZDACW 38563' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:16:03.328 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:03.338 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:03.338 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:16:03.338 -07 000000627 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:16:03.348 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 20:16:03.348 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:03.348 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:03.348 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:16:03.358 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:03.358 -07 000000501 INF: FPGA: Recv ZDACR 38563
17-03-17 20:16:03.368 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:03.368 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:16:03.368 -07 000000502 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:16:03.388 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:03.568 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:03.568 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 229 ms overall
17-03-17 20:16:03.608 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:16:03.608 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:16:03.608 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:03.608 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:03.608 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:16:03.608 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:16:03.608 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:03.618 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:03.618 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 20:16:03.618 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:16:03.768 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:16:03.768 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 414 ms overall
17-03-17 20:16:03.798 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:03.808 -07 000000627 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:16:03.808 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:03.808 -07 000000512 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:03.808 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:16:03.808 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 414 ms, distance = 0.844 mm, average velocity = 2.038 mm/sec
17-03-17 20:16:04.758 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:04.758 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:16:04.768 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:04.768 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:04.788 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:04.788 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:16:04.788 -07 000000512 INF: Y Motor: Moved to 65.7144 after 1481 ms (table move)
17-03-17 20:16:04.788 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176530 mm (DAC = 38563)
17-03-17 20:16:04.788 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.798 -07 000000618 INF: FPGA: Recv ZSGSRD 36769
17-03-17 20:16:04.798 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:16:04.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.798 -07 000000424 INF: FPGA: Recv ZSGSRD 36772
17-03-17 20:16:04.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:04.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.808 -07 000000626 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:16:04.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.818 -07 000000541 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:16:04.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.828 -07 000000501 INF: FPGA: Recv ZSGSRD 36762
17-03-17 20:16:04.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36772
17-03-17 20:16:04.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.848 -07 000000551 INF: FPGA: Recv ZSGSRD 36775
17-03-17 20:16:04.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.858 -07 000000569 INF: FPGA: Recv ZSGSRD 36765
17-03-17 20:16:04.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.868 -07 000000424 INF: FPGA: Recv ZSGSRD 36775
17-03-17 20:16:04.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:04.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36773
17-03-17 20:16:04.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.888 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:04.888 -07 000000618 INF: FPGA: Recv ZPIEZORD 33065
17-03-17 20:16:04.898 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.2 V.
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36770 (-175.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36760 (-175.6 uncal um), Max = 36775 (-175.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 7, negNoise = 8
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: After move to -0.176530, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-17 20:16:04.898 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:04.948 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-17 20:16:04.948 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:04.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:04.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:04.948 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:04.948 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:04.948 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:04.948 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:04.948 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:04.948 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:04.958 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:04.958 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:04.968 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:04.968 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:16:04.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:05.018 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:05.218 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:05.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:05.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:05.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start.
17-03-17 20:16:05.258 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:05.258 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:05.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:16:05.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:16:05.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:05.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:05.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:16:05.358 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:05.358 -07 000000458 INF: Autofocus start
17-03-17 20:16:05.358 -07 000000458 INF: MeasureProfile start
17-03-17 20:16:05.358 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:05.368 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:05.368 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:05.368 -07 000000458 INF: MeasureProfile done
17-03-17 20:16:05.368 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:16:05.368 -07 000000458 INF: Autofocus finished
17-03-17 20:16:05.568 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:05.568 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:05.568 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176528784039402. ----------
17-03-17 20:16:05.568 -07 000000610 INF: Cycle	36	Tile	8	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:05.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37078, sync = True, waitForSettling = True)
17-03-17 20:16:05.578 -07 000000610 INF: Z Motor: Moving to -0.169732 mm, started at -0.176529 mm, distance = 6.80 um
17-03-17 20:16:05.578 -07 000000610 INF: FPGA: Xmit ZDACW 37078\n [Z Motor]
17-03-17 20:16:05.578 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:16:05.588 -07 000000610 INF: FPGA: 'ZDACW 37078' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:05.588 -07 000000448 INF: FPGA: Recv ZDACR 37078
17-03-17 20:16:05.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35710
17-03-17 20:16:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.758 -07 000000618 INF: FPGA: Recv ZSGSRD 35708
17-03-17 20:16:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35712
17-03-17 20:16:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35712
17-03-17 20:16:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.788 -07 000000627 INF: FPGA: Recv ZSGSRD 35708
17-03-17 20:16:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.798 -07 000000501 INF: FPGA: Recv ZSGSRD 35709
17-03-17 20:16:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35712
17-03-17 20:16:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35715
17-03-17 20:16:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35713
17-03-17 20:16:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:05.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35708
17-03-17 20:16:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:05.848 -07 000000501 INF: FPGA: Recv ZPIEZORD 31710
17-03-17 20:16:05.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:05.858 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -8.8 V.
17-03-17 20:16:05.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35711 (-168.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35708 (-168.8 uncal um), Max = 35715 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:16:05.858 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 4, negNoise = 3
17-03-17 20:16:05.858 -07 000000610 INF: Z Motor: After move to -0.169732, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:05.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:16:05.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:05.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:05.858 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:05.858 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:05.858 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:05.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:05.858 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:05.858 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:05.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:05.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:05.858 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:16:05.858 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:05.858 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:05.858 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:05.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:05.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:05.868 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:16:05.868 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:05.868 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:05.878 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:05.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37255 150\n [Camera]
17-03-17 20:16:06.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:06.488 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:06.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:06.488 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:06.488 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:06.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:16:06.498 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:06.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:06.498 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:06.498 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:06.498 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:16:06.678 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37255 797
17-03-17 20:16:06.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:06.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:06.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:06.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:16:06.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:16:06.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:06.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:16:06.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:16:06.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:06.878 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:06.878 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:16:06.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:06.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:16:07.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:07.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:07.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:07.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:07.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:07.138 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:07.138 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:07.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:16:07.148 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:07.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:16:07.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:07.218 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:07.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37255 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall
17-03-17 20:16:07.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:07.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169738391805561. ------
17-03-17 20:16:07.228 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:07.228 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17621 mm
17-03-17 20:16:07.228 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:07.228 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:07.228 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:16:07.228 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:16:07.228 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38494, sync = True, waitForSettling = False)
17-03-17 20:16:07.228 -07 000000618 INF: Z Motor: Moving to -0.176214 mm, started at -0.169738 mm, distance = -6.48 um
17-03-17 20:16:07.238 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:07.238 -07 000000618 INF: FPGA: Xmit ZDACW 38494\n [Z Motor]
17-03-17 20:16:07.238 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:16:07.248 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:07.248 -07 000000618 INF: FPGA: 'ZDACW 38494' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:16:07.248 -07 000000541 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:16:07.258 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:07.258 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:16:07.258 -07 000000627 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:07.258 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:07.258 -07 000000627 INF: Y Motor: Moving 1340 steps-18
17-03-17 20:16:07.268 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:07.268 -07 000000424 INF: FPGA: Recv ZDACR 38494
17-03-17 20:16:07.278 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:07.278 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:07.278 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:16:07.458 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:07.458 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:16:07.528 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:16:07.528 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:16:07.528 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:07.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:16:07.528 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:16:07.528 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:07.538 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:07.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:07.538 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 20:16:07.538 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:16:07.648 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:16:07.648 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:16:07.688 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:07.688 -07 000000478 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:16:07.698 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:07.698 -07 000000627 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:07.698 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:16:07.698 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.838 mm, average velocity = 2.149 mm/sec
17-03-17 20:16:08.648 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:08.648 -07 000000424 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:16:08.658 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:08.658 -07 000000627 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:08.678 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:08.678 -07 000000627 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:08.678 -07 000000627 INF: Y Motor: Moved to 66.5391 after 1446 ms (table move)
17-03-17 20:16:08.678 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176214 mm (DAC = 38494)
17-03-17 20:16:08.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.688 -07 000000502 INF: FPGA: Recv ZSGSRD 36724
17-03-17 20:16:08.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:16:08.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:16:08.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:08.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.708 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.020806,
17-03-17 20:16:08.708 -07 000000424 INF: FPGA: Recv ZSGSRD 36727
17-03-17 20:16:08.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:08.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.728 -07 000000501 INF: FPGA: Recv ZSGSRD 36718
17-03-17 20:16:08.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:08.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36716
17-03-17 20:16:08.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:08.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.758 -07 000000541 INF: FPGA: Recv ZSGSRD 36723
17-03-17 20:16:08.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:08.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:16:08.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:08.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:16:08.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:08.798 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.798 -07 000000424 INF: FPGA: Recv ZSGSRD 36725
17-03-17 20:16:08.808 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:08.818 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:08.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36712
17-03-17 20:16:08.828 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:08.828 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:08.828 -07 000000618 INF: FPGA: Recv ZPIEZORD 33002
17-03-17 20:16:08.838 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.2 V.
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36721 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36712 (-175.3 uncal um), Max = 36729 (-175.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36721, posNoise = 8, negNoise = 9
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: After move to -0.176214, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 153 ms (allowed 150 ms), total time = 1602 ms
17-03-17 20:16:08.838 -07 000000448 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 20:16:08.838 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:16:08.838 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:08.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:08.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:08.838 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:08.838 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:08.838 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:08.838 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:08.838 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:08.838 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:08.848 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:08.848 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:08.858 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:08.858 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:16:08.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:08.908 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:09.108 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:09.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:09.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:09.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start.
17-03-17 20:16:09.148 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:09.148 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:09.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:16:09.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:16:09.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:09.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:09.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:16:09.248 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:09.248 -07 000000627 INF: Autofocus start
17-03-17 20:16:09.248 -07 000000627 INF: MeasureProfile start
17-03-17 20:16:09.248 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:09.258 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:09.258 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:09.258 -07 000000627 INF: MeasureProfile done
17-03-17 20:16:09.258 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:16:09.258 -07 000000627 INF: Autofocus finished
17-03-17 20:16:09.458 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:09.458 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:09.458 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176226846068739. ----------
17-03-17 20:16:09.458 -07 000000610 INF: Cycle	36	Tile	9	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:09.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36991, sync = True, waitForSettling = True)
17-03-17 20:16:09.468 -07 000000610 INF: Z Motor: Moving to -0.169334 mm, started at -0.176227 mm, distance = 6.89 um
17-03-17 20:16:09.468 -07 000000610 INF: FPGA: Xmit ZDACW 36991\n [Z Motor]
17-03-17 20:16:09.468 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:16:09.478 -07 000000610 INF: FPGA: 'ZDACW 36991' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:09.478 -07 000000424 INF: FPGA: Recv ZDACR 36991
17-03-17 20:16:09.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.638 -07 000000415 INF: FPGA: Recv ZSGSRD 35649
17-03-17 20:16:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.648 -07 000000501 INF: FPGA: Recv ZSGSRD 35657
17-03-17 20:16:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35647
17-03-17 20:16:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.668 -07 000000626 INF: FPGA: Recv ZSGSRD 35645
17-03-17 20:16:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35658
17-03-17 20:16:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.688 -07 000000448 INF: FPGA: Recv ZSGSRD 35651
17-03-17 20:16:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.698 -07 000000458 INF: FPGA: Recv ZSGSRD 35646
17-03-17 20:16:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35650
17-03-17 20:16:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.718 -07 000000424 INF: FPGA: Recv ZSGSRD 35654
17-03-17 20:16:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:09.728 -07 000000501 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:16:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:09.738 -07 000000458 INF: FPGA: Recv ZPIEZORD 31570
17-03-17 20:16:09.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:09.748 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.0 V.
17-03-17 20:16:09.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35650 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35645 (-168.4 uncal um), Max = 35658 (-168.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:09.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 7, negNoise = 6
17-03-17 20:16:09.748 -07 000000610 INF: Z Motor: After move to -0.169334, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:09.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:16:09.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:09.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:09.748 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:09.748 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:09.748 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:09.748 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:09.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:09.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:09.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:09.748 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:09.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:09.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:09.758 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:09.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:09.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:09.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:09.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:16:09.758 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:09.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:16:09.768 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:16:09.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37167 150\n [Camera]
17-03-17 20:16:09.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:10.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:10.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:10.378 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:10.378 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:10.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:10.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:10.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:10.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:16:10.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:10.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:16:10.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37167 797
17-03-17 20:16:10.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:10.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:16:10.768 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:16:10.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:10.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:16:10.768 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:16:10.768 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:10.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:10.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:16:10.768 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:10.778 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:16:10.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:10.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:10.918 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:10.918 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:10.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:16:10.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:10.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:10.928 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:10.928 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:10.928 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) start.
17-03-17 20:16:11.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:16:11.238 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:11.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37167 150' command took 2 ms to send, 1460 ms to get response, and 1466 ms overall
17-03-17 20:16:11.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:11.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169352939077055. ------
17-03-17 20:16:11.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:11.238 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17624 mm
17-03-17 20:16:11.238 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:11.248 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:16:11.248 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:11.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:11.248 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:11.248 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38499, sync = True, waitForSettling = False)
17-03-17 20:16:11.248 -07 000000547 INF: Z Motor: Moving to -0.176237 mm, started at -0.169353 mm, distance = -6.88 um
17-03-17 20:16:11.248 -07 000000433 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:16:11.258 -07 000000547 INF: FPGA: Xmit ZDACW 38499\n [Z Motor]
17-03-17 20:16:11.258 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:16:11.268 -07 000000547 INF: FPGA: 'ZDACW 38499' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:16:11.268 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:11.268 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:16:11.278 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:11.278 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:16:11.278 -07 000000433 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:11.278 -07 000000618 INF: FPGA: Recv ZDACR 38499
17-03-17 20:16:11.278 -07 000000433 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:11.278 -07 000000433 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:16:11.288 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:11.288 -07 000000547 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:16:11.288 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:11.308 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:16:11.308 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:16:11.308 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:11.318 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:11.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:16:11.318 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:16:11.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:11.318 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:16:11.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:11.318 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:16:11.448 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:11.448 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:11.658 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:16:11.658 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:16:11.698 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:11.698 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:16:11.708 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:11.708 -07 000000433 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:11.708 -07 000000433 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:16:11.708 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 20:16:11.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:12.658 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:12.658 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:16:12.668 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:12.668 -07 000000433 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:12.688 -07 000000433 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:12.688 -07 000000433 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:12.688 -07 000000433 INF: Y Motor: Moved to 67.3721 after 1444 ms (table move)
17-03-17 20:16:12.688 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176237 mm (DAC = 38499)
17-03-17 20:16:12.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.698 -07 000000501 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:16:12.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:16:12.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.698 -07 000000448 INF: FPGA: Recv ZSGSRD 36717
17-03-17 20:16:12.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:12.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.708 -07 000000627 INF: FPGA: Recv ZSGSRD 36722
17-03-17 20:16:12.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.718 -07 000000502 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:16:12.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.728 -07 000000424 INF: FPGA: Recv ZSGSRD 36724
17-03-17 20:16:12.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:16:12.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.748 -07 000000502 INF: FPGA: Recv ZSGSRD 36723
17-03-17 20:16:12.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.758 -07 000000618 INF: FPGA: Recv ZSGSRD 36719
17-03-17 20:16:12.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.768 -07 000000501 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:16:12.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:12.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:16:12.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.788 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:12.788 -07 000000501 INF: FPGA: Recv ZPIEZORD 33026
17-03-17 20:16:12.798 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36723 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36717 (-175.3 uncal um), Max = 36731 (-175.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36723, posNoise = 8, negNoise = 6
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: After move to -0.176237, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:16:12.798 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:12.848 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:16:12.848 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:12.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:12.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:12.848 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:12.848 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:12.848 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:12.848 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:12.848 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:12.848 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:12.858 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:12.858 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:12.858 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:16:12.858 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:16:12.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:12.908 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:13.108 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:13.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:13.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:13.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:13.148 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:13.148 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:13.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:16:13.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:16:13.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:13.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:13.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:16:13.248 -07 000000626 INF: Autofocus start
17-03-17 20:16:13.248 -07 000000626 INF: MeasureProfile start
17-03-17 20:16:13.248 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:13.248 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:13.258 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:13.258 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:13.258 -07 000000626 INF: MeasureProfile done
17-03-17 20:16:13.258 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:16:13.258 -07 000000626 INF: Autofocus finished
17-03-17 20:16:13.458 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:13.458 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:13.458 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176239694493023. ----------
17-03-17 20:16:13.458 -07 000000610 INF: Cycle	36	Tile	10	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:13.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36996, sync = True, waitForSettling = True)
17-03-17 20:16:13.468 -07 000000610 INF: Z Motor: Moving to -0.169357 mm, started at -0.176240 mm, distance = 6.88 um
17-03-17 20:16:13.468 -07 000000610 INF: FPGA: Xmit ZDACW 36996\n [Z Motor]
17-03-17 20:16:13.468 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:16:13.478 -07 000000610 INF: FPGA: 'ZDACW 36996' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:13.478 -07 000000478 INF: FPGA: Recv ZDACR 36996
17-03-17 20:16:13.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:13.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35654
17-03-17 20:16:13.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:13.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.648 -07 000000415 INF: FPGA: Recv ZSGSRD 35652
17-03-17 20:16:13.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.658 -07 000000478 INF: FPGA: Recv ZSGSRD 35650
17-03-17 20:16:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.688 -07 000000448 INF: FPGA: Recv ZSGSRD 35656
17-03-17 20:16:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:16:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:16:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.748 -07 000000458 INF: FPGA: Recv ZSGSRD 35650
17-03-17 20:16:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35659
17-03-17 20:16:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35651
17-03-17 20:16:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:13.778 -07 000000448 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:16:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:13.788 -07 000000618 INF: FPGA: Recv ZPIEZORD 31578
17-03-17 20:16:13.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:13.798 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.0 V.
17-03-17 20:16:13.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35653 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35653 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:16:13.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35653, posNoise = 6, negNoise = 3
17-03-17 20:16:13.798 -07 000000610 INF: Z Motor: After move to -0.169357, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:13.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 20:16:13.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:13.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:13.798 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:13.798 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:13.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:13.798 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:13.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:13.798 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:13.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:13.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:13.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:13.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:13.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:13.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:13.808 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:13.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:13.808 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:16:13.808 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:16:13.818 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:16:13.818 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:16:13.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37173 150\n [Camera]
17-03-17 20:16:14.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:14.138 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.050752,
17-03-17 20:16:14.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:14.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:14.438 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:14.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:14.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:14.438 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:14.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:14.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1101434984, 0x0, 418435064) start.
17-03-17 20:16:14.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:14.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:16:14.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37173 797
17-03-17 20:16:14.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:14.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:16:14.828 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:16:14.828 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:14.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1101434984, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:16:14.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:16:14.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:14.828 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:14.828 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:16:14.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:14.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:16:14.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:14.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:14.978 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:14.978 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:14.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:14.978 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:14.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1136857248, 0x0, 391868352) start.
17-03-17 20:16:14.978 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:14.978 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:14.978 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:16:15.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:15.168 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:15.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37173 150' command took 2 ms to send, 1335 ms to get response, and 1348 ms overall
17-03-17 20:16:15.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:15.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169365787501338. ------
17-03-17 20:16:15.178 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17579 mm
17-03-17 20:16:15.178 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:15.178 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:15.178 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38401, sync = True, waitForSettling = False)
17-03-17 20:16:15.178 -07 000000433 INF: Z Motor: Moving to -0.175789 mm, started at -0.169366 mm, distance = -6.42 um
17-03-17 20:16:15.178 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:16:15.178 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:16:15.178 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:15.188 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:16:15.188 -07 000000433 INF: FPGA: Xmit ZDACW 38401\n [Z Motor]
17-03-17 20:16:15.188 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:16:15.198 -07 000000433 INF: FPGA: 'ZDACW 38401' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:16:15.198 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:15.198 -07 000000547 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:16:15.208 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:16:15.208 -07 000000478 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:15.208 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:15.208 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:15.208 -07 000000478 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:16:15.218 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:15.218 -07 000000501 INF: FPGA: Recv ZDACR 38401
17-03-17 20:16:15.228 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:15.228 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:15.228 -07 000000433 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:16:15.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1136857248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:16:15.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:16:15.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:15.378 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:16:15.378 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:16:15.378 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:15.388 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:15.388 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:16:15.388 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:15.398 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:16:15.408 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:15.408 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:16:15.598 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:16:15.598 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:16:15.638 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:15.638 -07 000000415 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:16:15.648 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:15.648 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:15.648 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:16:15.648 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:16:16.598 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:16.598 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:16:16.608 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:16.608 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:16.628 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:16.628 -07 000000478 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:16.628 -07 000000478 INF: Y Motor: Moved to 68.2051 after 1445 ms (table move)
17-03-17 20:16:16.628 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175789 mm (DAC = 38401)
17-03-17 20:16:16.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36662
17-03-17 20:16:16.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:16.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.638 -07 000000618 INF: FPGA: Recv ZSGSRD 36649
17-03-17 20:16:16.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.648 -07 000000501 INF: FPGA: Recv ZSGSRD 36657
17-03-17 20:16:16.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.658 -07 000000618 INF: FPGA: Recv ZSGSRD 36659
17-03-17 20:16:16.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.668 -07 000000547 INF: FPGA: Recv ZSGSRD 36653
17-03-17 20:16:16.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.678 -07 000000458 INF: FPGA: Recv ZSGSRD 36658
17-03-17 20:16:16.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36656
17-03-17 20:16:16.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36650
17-03-17 20:16:16.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.708 -07 000000547 INF: FPGA: Recv ZSGSRD 36647
17-03-17 20:16:16.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:16.718 -07 000000618 INF: FPGA: Recv ZSGSRD 36654
17-03-17 20:16:16.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.728 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:16.728 -07 000000547 INF: FPGA: Recv ZPIEZORD 32949
17-03-17 20:16:16.738 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -8.2 V.
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36654 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36655 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36647 (-174.9 uncal um), Max = 36662 (-175.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36654, posNoise = 8, negNoise = 7
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: After move to -0.175789, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-17 20:16:16.738 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:16.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:16.788 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:16:16.788 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:16.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:16.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:16.788 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:16.788 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:16.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:16.788 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:16.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:16.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:16.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:16.798 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:16.808 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:16:16.808 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:16:16.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:16.858 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:17.058 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:17.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:17.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:17.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 20:16:17.098 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:17.098 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:17.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:16:17.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:16:17.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:17.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:17.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:16:17.198 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:17.198 -07 000000415 INF: Autofocus start
17-03-17 20:16:17.198 -07 000000415 INF: MeasureProfile start
17-03-17 20:16:17.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:17.208 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:17.208 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:17.218 -07 000000415 INF: MeasureProfile done
17-03-17 20:16:17.218 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:16:17.218 -07 000000415 INF: Autofocus finished
17-03-17 20:16:17.408 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:17.408 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:16:17.418 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175796423855241. ----------
17-03-17 20:16:17.418 -07 000000610 INF: Cycle	36	Tile	11	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:17.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = True)
17-03-17 20:16:17.428 -07 000000610 INF: Z Motor: Moving to -0.168991 mm, started at -0.175796 mm, distance = 6.81 um
17-03-17 20:16:17.428 -07 000000610 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-17 20:16:17.428 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:16:17.438 -07 000000610 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:17.438 -07 000000448 INF: FPGA: Recv ZDACR 36916
17-03-17 20:16:17.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:17.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.598 -07 000000501 INF: FPGA: Recv ZSGSRD 35594
17-03-17 20:16:17.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:17.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35600
17-03-17 20:16:17.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.618 -07 000000448 INF: FPGA: Recv ZSGSRD 35589
17-03-17 20:16:17.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.628 -07 000000501 INF: FPGA: Recv ZSGSRD 35595
17-03-17 20:16:17.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.638 -07 000000382 INF: FPGA: Recv ZSGSRD 35601
17-03-17 20:16:17.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.648 -07 000000501 INF: FPGA: Recv ZSGSRD 35595
17-03-17 20:16:17.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.658 -07 000000448 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:16:17.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35594
17-03-17 20:16:17.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.678 -07 000000501 INF: FPGA: Recv ZSGSRD 35593
17-03-17 20:16:17.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:17.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35589
17-03-17 20:16:17.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:17.698 -07 000000448 INF: FPGA: Recv ZPIEZORD 31514
17-03-17 20:16:17.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:17.708 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.0 V.
17-03-17 20:16:17.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35595 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35589 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:17.708 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35595, posNoise = 9, negNoise = 6
17-03-17 20:16:17.708 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:17.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:16:17.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:17.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:17.708 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:17.708 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:17.708 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:17.708 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:17.708 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:17.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:17.708 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:16:17.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:17.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:17.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:17.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:17.718 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:17.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:17.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:17.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:17.728 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:17.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:16:17.728 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:17.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37093 150\n [Camera]
17-03-17 20:16:17.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:18.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:18.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:18.338 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:18.338 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:18.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:16:18.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:18.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:18.348 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:18.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:18.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:16:18.528 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37093 797
17-03-17 20:16:18.678 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:18.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:16:18.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:16:18.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:16:18.718 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:18.718 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:16:18.718 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:18.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:16:18.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:16:18.728 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:16:18.738 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:16:18.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:18.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:18.878 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:18.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:18.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:16:18.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:18.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:18.888 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:18.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:18.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:16:19.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:19.068 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:19.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37093 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:16:19.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:19.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168993183197116. ------
17-03-17 20:16:19.198 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17554 mm
17-03-17 20:16:19.198 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:19.198 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:16:19.198 -07 000000458 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:16:19.198 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38346, sync = True, waitForSettling = False)
17-03-17 20:16:19.198 -07 000000478 INF: Z Motor: Moving to -0.175537 mm, started at -0.168993 mm, distance = -6.54 um
17-03-17 20:16:19.218 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:19.218 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:19.228 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:19.228 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:16:19.228 -07 000000448 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:16:19.238 -07 000000478 INF: FPGA: Xmit ZDACW 38346\n [Z Motor]
17-03-17 20:16:19.238 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 20:16:19.238 -07 000000458 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:19.238 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:16:19.238 -07 000000458 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:19.238 -07 000000458 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:16:19.248 -07 000000478 INF: FPGA: 'ZDACW 38346' command took 0 ms to send, 0 ms to get response, and 44 ms overall
17-03-17 20:16:19.258 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:19.268 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:19.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:16:19.268 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:16:19.268 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:19.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:19.278 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:19.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:16:19.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:16:19.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:19.278 -07 000000547 INF: FPGA: Recv ZDACR 38346
17-03-17 20:16:19.278 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:16:19.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:16:19.278 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:16:19.288 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 20:16:19.288 -07 000000478 INF: Z Motor: MoveAbsStepped took 84 ms (did NOT wait for settling yet))
17-03-17 20:16:19.458 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:19.458 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 20:16:19.518 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.046637,
17-03-17 20:16:19.638 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:16:19.638 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 20:16:19.678 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:19.678 -07 000000627 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:16:19.688 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:19.688 -07 000000458 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:19.688 -07 000000458 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:16:19.688 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.838 mm, average velocity = 2.073 mm/sec
17-03-17 20:16:20.638 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:20.638 -07 000000448 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:16:20.648 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:20.648 -07 000000458 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:20.668 -07 000000458 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:20.668 -07 000000458 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:20.668 -07 000000458 INF: Y Motor: Moved to 69.0273 after 1466 ms (table move)
17-03-17 20:16:20.668 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175537 mm (DAC = 38346)
17-03-17 20:16:20.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36620
17-03-17 20:16:20.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:20.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.678 -07 000000433 INF: FPGA: Recv ZSGSRD 36613
17-03-17 20:16:20.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:20.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36613
17-03-17 20:16:20.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.698 -07 000000433 INF: FPGA: Recv ZSGSRD 36614
17-03-17 20:16:20.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36617
17-03-17 20:16:20.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.718 -07 000000569 INF: FPGA: Recv ZSGSRD 36620
17-03-17 20:16:20.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.728 -07 000000502 INF: FPGA: Recv ZSGSRD 36613
17-03-17 20:16:20.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.738 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.738 -07 000000569 INF: FPGA: Recv ZSGSRD 36613
17-03-17 20:16:20.748 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.748 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.748 -07 000000478 INF: FPGA: Recv ZSGSRD 36614
17-03-17 20:16:20.758 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.758 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:20.758 -07 000000433 INF: FPGA: Recv ZSGSRD 36617
17-03-17 20:16:20.768 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.768 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:20.768 -07 000000478 INF: FPGA: Recv ZPIEZORD 32914
17-03-17 20:16:20.778 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.2 V.
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36615 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36614 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36613 (-174.6 uncal um), Max = 36620 (-174.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36615, posNoise = 5, negNoise = 2
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: After move to -0.175537, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-17 20:16:20.778 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:20.828 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-17 20:16:20.828 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:20.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:20.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:20.828 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:20.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:20.828 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:20.828 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:20.838 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:16:20.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:20.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:20.838 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:20.838 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:16:20.848 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:16:20.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:20.888 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:21.088 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:21.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:21.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:21.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:21.128 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:21.128 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:21.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:16:21.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:16:21.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:21.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:21.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:16:21.228 -07 000000433 INF: Autofocus start
17-03-17 20:16:21.228 -07 000000433 INF: MeasureProfile start
17-03-17 20:16:21.228 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:21.228 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:21.238 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:21.238 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:21.238 -07 000000433 INF: MeasureProfile done
17-03-17 20:16:21.238 -07 000000433 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:16:21.238 -07 000000433 INF: Autofocus finished
17-03-17 20:16:21.438 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:21.438 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:21.438 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175545879581712. ----------
17-03-17 20:16:21.448 -07 000000610 INF: Cycle	36	Tile	12	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:21.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36879, sync = True, waitForSettling = True)
17-03-17 20:16:21.448 -07 000000610 INF: Z Motor: Moving to -0.168821 mm, started at -0.175546 mm, distance = 6.72 um
17-03-17 20:16:21.448 -07 000000610 INF: FPGA: Xmit ZDACW 36879\n [Z Motor]
17-03-17 20:16:21.448 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:16:21.458 -07 000000610 INF: FPGA: 'ZDACW 36879' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:21.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:21.458 -07 000000382 INF: FPGA: Recv ZDACR 36879
17-03-17 20:16:21.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.618 -07 000000627 INF: FPGA: Recv ZSGSRD 35569
17-03-17 20:16:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.628 -07 000000502 INF: FPGA: Recv ZSGSRD 35571
17-03-17 20:16:21.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.638 -07 000000627 INF: FPGA: Recv ZSGSRD 35574
17-03-17 20:16:21.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35573
17-03-17 20:16:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.658 -07 000000569 INF: FPGA: Recv ZSGSRD 35570
17-03-17 20:16:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35566
17-03-17 20:16:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.678 -07 000000547 INF: FPGA: Recv ZSGSRD 35571
17-03-17 20:16:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.688 -07 000000501 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:16:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:16:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:21.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35571
17-03-17 20:16:21.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:21.718 -07 000000501 INF: FPGA: Recv ZPIEZORD 31503
17-03-17 20:16:21.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:21.728 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.0 V.
17-03-17 20:16:21.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35570 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35566 (-167.9 uncal um), Max = 35574 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:16:21.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35570, posNoise = 4, negNoise = 4
17-03-17 20:16:21.728 -07 000000610 INF: Z Motor: After move to -0.168821, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:21.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:16:21.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:21.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:21.728 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:21.728 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:21.728 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:21.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:21.728 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:21.728 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:21.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:21.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:21.728 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:21.728 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:21.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:21.738 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:21.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:21.738 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:21.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:21.748 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:21.748 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:16:21.748 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:16:21.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37056 150\n [Camera]
17-03-17 20:16:21.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:21.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:22.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:22.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:22.358 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:22.358 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:22.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:22.358 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:22.368 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:22.368 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:16:22.368 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:22.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:16:22.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37056 797
17-03-17 20:16:22.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:22.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:16:22.748 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:16:22.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:22.748 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:22.748 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:16:22.748 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:16:22.748 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:16:22.748 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:22.748 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:22.758 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:16:22.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:22.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:22.898 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:22.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:22.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:22.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:22.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:16:22.908 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:22.908 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:22.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) start.
17-03-17 20:16:23.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:16:23.088 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:23.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37056 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:16:23.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:23.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168832577893572. ------
17-03-17 20:16:23.098 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:23.098 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17518 mm
17-03-17 20:16:23.098 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:23.098 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:16:23.098 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38269, sync = True, waitForSettling = False)
17-03-17 20:16:23.098 -07 000000458 INF: Z Motor: Moving to -0.175184 mm, started at -0.168833 mm, distance = -6.35 um
17-03-17 20:16:23.098 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:16:23.218 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:23.218 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 20:16:23.218 -07 000000458 INF: FPGA: Xmit ZDACW 38269\n [Z Motor]
17-03-17 20:16:23.218 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:16:23.228 -07 000000458 INF: FPGA: 'ZDACW 38269' command took 1 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 20:16:23.228 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:23.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:23.238 -07 000000547 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:16:23.248 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:23.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 5 ms to send, 0 ms to get response, and 142 ms overall
17-03-17 20:16:23.248 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:23.248 -07 000000569 INF: FPGA: Recv ZDACR 38269
17-03-17 20:16:23.248 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:23.248 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:16:23.258 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:23.258 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:23.258 -07 000000458 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-17 20:16:23.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:16:23.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:16:23.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:23.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:16:23.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:16:23.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:23.308 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:23.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:23.308 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:16:23.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:16:23.428 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:23.428 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 20:16:23.628 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:16:23.628 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:16:23.668 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:23.668 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:16:23.678 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:23.678 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:23.678 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:16:23.678 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.196 mm/sec
17-03-17 20:16:24.628 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:24.628 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:16:24.638 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.638 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:24.658 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:24.658 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:24.658 -07 000000626 INF: Y Motor: Moved to 69.8633 after 1556 ms (table move)
17-03-17 20:16:24.658 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175184 mm (DAC = 38269)
17-03-17 20:16:24.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36562
17-03-17 20:16:24.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:24.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36562
17-03-17 20:16:24.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.678 -07 000000626 INF: FPGA: Recv ZSGSRD 36566
17-03-17 20:16:24.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36564
17-03-17 20:16:24.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.698 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.698 -07 000000569 INF: FPGA: Recv ZSGSRD 36558
17-03-17 20:16:24.708 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.708 -07 000000512 INF: FPGA: Recv ZSGSRD 36561
17-03-17 20:16:24.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36557
17-03-17 20:16:24.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.728 -07 000000569 INF: FPGA: Recv ZSGSRD 36550
17-03-17 20:16:24.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.738 -07 000000626 INF: FPGA: Recv ZSGSRD 36557
17-03-17 20:16:24.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:24.748 -07 000000569 INF: FPGA: Recv ZSGSRD 36562
17-03-17 20:16:24.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.758 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:24.758 -07 000000458 INF: FPGA: Recv ZPIEZORD 32812
17-03-17 20:16:24.768 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.839 V. Piezo Error = -8.3 V.
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36560 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36562 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36550 (-174.2 uncal um), Max = 36566 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36560, posNoise = 6, negNoise = 10
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: After move to -0.175184, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: Settle wait time = 1559 ms, measure time = 104 ms (allowed 150 ms), total time = 1663 ms
17-03-17 20:16:24.768 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:24.818 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 20:16:24.818 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:24.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:24.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:24.818 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:24.818 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:24.818 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:24.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:24.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:24.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:24.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:24.828 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:24.838 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:24.838 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:16:24.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:24.888 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.019446,
17-03-17 20:16:24.888 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:25.088 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:25.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:25.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:25.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:25.128 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:25.128 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:25.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:16:25.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:16:25.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:25.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:25.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:16:25.228 -07 000000448 INF: Autofocus start
17-03-17 20:16:25.228 -07 000000448 INF: MeasureProfile start
17-03-17 20:16:25.228 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:25.228 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:25.238 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:25.238 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:25.238 -07 000000448 INF: MeasureProfile done
17-03-17 20:16:25.238 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:16:25.238 -07 000000448 INF: Autofocus finished
17-03-17 20:16:25.438 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:25.438 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:25.438 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175192547913916. ----------
17-03-17 20:16:25.438 -07 000000610 INF: Cycle	36	Tile	13	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:25.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36784, sync = True, waitForSettling = True)
17-03-17 20:16:25.448 -07 000000610 INF: Z Motor: Moving to -0.168386 mm, started at -0.175193 mm, distance = 6.81 um
17-03-17 20:16:25.448 -07 000000610 INF: FPGA: Xmit ZDACW 36784\n [Z Motor]
17-03-17 20:16:25.448 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:16:25.458 -07 000000610 INF: FPGA: 'ZDACW 36784' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:25.458 -07 000000502 INF: FPGA: Recv ZDACR 36784
17-03-17 20:16:25.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:25.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35503
17-03-17 20:16:25.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.628 -07 000000458 INF: FPGA: Recv ZSGSRD 35506
17-03-17 20:16:25.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.638 -07 000000512 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:16:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.648 -07 000000458 INF: FPGA: Recv ZSGSRD 35501
17-03-17 20:16:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.658 -07 000000478 INF: FPGA: Recv ZSGSRD 35504
17-03-17 20:16:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35502
17-03-17 20:16:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:16:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35505
17-03-17 20:16:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.698 -07 000000547 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:16:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:25.708 -07 000000569 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:16:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:25.718 -07 000000501 INF: FPGA: Recv ZPIEZORD 31437
17-03-17 20:16:25.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:25.728 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.0 V.
17-03-17 20:16:25.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35502 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35502 (-167.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35500 (-167.5 uncal um), Max = 35506 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:16:25.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35502, posNoise = 4, negNoise = 2
17-03-17 20:16:25.728 -07 000000610 INF: Z Motor: After move to -0.168386, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:25.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:16:25.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:25.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:25.728 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:25.728 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:25.728 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:25.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:25.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:25.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:25.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:25.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:25.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:25.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:25.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:16:25.738 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:25.738 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:25.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:25.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:16:25.748 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:25.748 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:16:25.748 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:16:25.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36961 150\n [Camera]
17-03-17 20:16:25.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:26.358 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:26.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:26.358 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:26.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:26.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:26.368 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:26.368 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:26.368 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:16:26.368 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:26.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:16:26.548 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36961 797
17-03-17 20:16:26.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:26.738 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:16:26.738 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:16:26.738 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:26.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:16:26.748 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:16:26.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:26.748 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:26.748 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:16:26.748 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:26.758 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:16:26.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:26.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:26.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:26.898 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:26.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:26.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:26.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:26.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:26.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:16:26.908 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:26.908 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:16:27.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:27.088 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:27.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36961 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:16:27.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:27.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168395731467932. ------
17-03-17 20:16:27.098 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:27.098 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17483 mm
17-03-17 20:16:27.098 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:27.098 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:16:27.098 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:16:27.098 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38192, sync = True, waitForSettling = False)
17-03-17 20:16:27.098 -07 000000618 INF: Z Motor: Moving to -0.174832 mm, started at -0.168396 mm, distance = -6.44 um
17-03-17 20:16:27.098 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:27.108 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:27.108 -07 000000618 INF: FPGA: Xmit ZDACW 38192\n [Z Motor]
17-03-17 20:16:27.108 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:16:27.118 -07 000000618 INF: FPGA: 'ZDACW 38192' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:16:27.118 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:27.128 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:27.128 -07 000000547 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:16:27.138 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:27.138 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 20:16:27.138 -07 000000415 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:27.138 -07 000000448 INF: FPGA: Recv ZDACR 38192
17-03-17 20:16:27.138 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:27.138 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:16:27.148 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:27.148 -07 000000618 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:16:27.148 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:27.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:16:27.288 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:16:27.288 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:27.288 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:27.298 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:16:27.298 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:16:27.298 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:16:27.298 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:27.298 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:27.298 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:16:27.318 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:27.318 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:16:27.518 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:16:27.518 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:16:27.558 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:27.558 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:16:27.568 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:27.568 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:27.568 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:16:27.568 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-17 20:16:28.518 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:28.518 -07 000000433 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:16:28.528 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:28.528 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:28.548 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:28.548 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:16:28.548 -07 000000415 INF: Y Motor: Moved to 70.6890 after 1443 ms (table move)
17-03-17 20:16:28.548 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174832 mm (DAC = 38192)
17-03-17 20:16:28.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.548 -07 000000501 INF: FPGA: Recv ZSGSRD 36501
17-03-17 20:16:28.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:28.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.558 -07 000000618 INF: FPGA: Recv ZSGSRD 36504
17-03-17 20:16:28.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.568 -07 000000433 INF: FPGA: Recv ZSGSRD 36506
17-03-17 20:16:28.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:16:28.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.588 -07 000000448 INF: FPGA: Recv ZSGSRD 36513
17-03-17 20:16:28.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:16:28.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36508
17-03-17 20:16:28.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.618 -07 000000618 INF: FPGA: Recv ZSGSRD 36500
17-03-17 20:16:28.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.628 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36500
17-03-17 20:16:28.638 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.638 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:28.638 -07 000000626 INF: FPGA: Recv ZSGSRD 36507
17-03-17 20:16:28.648 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.648 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:28.648 -07 000000448 INF: FPGA: Recv ZPIEZORD 32793
17-03-17 20:16:28.658 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.2 V.
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36505 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36505, posNoise = 8, negNoise = 5
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: After move to -0.174832, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:16:28.658 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:28.708 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:16:28.708 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:28.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:28.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:28.708 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:28.708 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:28.708 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:28.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:28.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:28.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:28.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:28.718 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:28.728 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:28.728 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:16:28.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:28.778 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:28.978 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:28.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:28.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:28.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:16:29.018 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:29.018 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:29.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:16:29.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:16:29.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:29.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:29.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:16:29.118 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:29.118 -07 000000502 INF: Autofocus start
17-03-17 20:16:29.118 -07 000000502 INF: MeasureProfile start
17-03-17 20:16:29.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:29.128 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:29.128 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:29.128 -07 000000502 INF: MeasureProfile done
17-03-17 20:16:29.128 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:16:29.128 -07 000000502 INF: Autofocus finished
17-03-17 20:16:29.328 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:29.328 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:29.328 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174839216246119. ----------
17-03-17 20:16:29.328 -07 000000610 INF: Cycle	36	Tile	14	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:29.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36689, sync = True, waitForSettling = True)
17-03-17 20:16:29.338 -07 000000610 INF: Z Motor: Moving to -0.167951 mm, started at -0.174839 mm, distance = 6.89 um
17-03-17 20:16:29.338 -07 000000610 INF: FPGA: Xmit ZDACW 36689\n [Z Motor]
17-03-17 20:16:29.338 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:16:29.348 -07 000000610 INF: FPGA: 'ZDACW 36689' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:29.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:29.348 -07 000000501 INF: FPGA: Recv ZDACR 36689
17-03-17 20:16:29.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35435
17-03-17 20:16:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:16:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:16:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:16:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35429
17-03-17 20:16:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:16:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:16:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35435
17-03-17 20:16:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.588 -07 000000458 INF: FPGA: Recv ZSGSRD 35432
17-03-17 20:16:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:29.598 -07 000000626 INF: FPGA: Recv ZSGSRD 35430
17-03-17 20:16:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:29.608 -07 000000569 INF: FPGA: Recv ZPIEZORD 31366
17-03-17 20:16:29.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:29.618 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.0 V.
17-03-17 20:16:29.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35435 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35435 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35429 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:29.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35435, posNoise = 6, negNoise = 6
17-03-17 20:16:29.618 -07 000000610 INF: Z Motor: After move to -0.167951, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:29.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:16:29.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:29.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:29.618 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:29.618 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:29.618 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:29.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:29.618 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:29.618 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:29.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:29.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:29.618 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:29.618 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:29.628 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:29.628 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:29.628 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:16:29.628 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:29.638 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:29.638 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:29.638 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:16:29.638 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:16:29.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36865 150\n [Camera]
17-03-17 20:16:29.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:30.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:30.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:30.248 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:30.248 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:30.248 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) start.
17-03-17 20:16:30.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:30.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:30.258 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:30.258 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:30.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) start.
17-03-17 20:16:30.268 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.001704,
17-03-17 20:16:30.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36865 797
17-03-17 20:16:30.588 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:30.628 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:16:30.628 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:16:30.628 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:30.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:16:30.628 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:16:30.628 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:30.638 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:30.638 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:16:30.638 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:30.638 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:16:30.798 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:16:30.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:16:30.798 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:30.798 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:30.798 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:16:30.798 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:16:30.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:16:30.798 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:30.798 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:30.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:16:30.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:16:30.988 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:30.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36865 150' command took 2 ms to send, 1340 ms to get response, and 1345 ms overall
17-03-17 20:16:30.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:30.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167965309254434. ------
17-03-17 20:16:30.988 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:31.108 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17457 mm
17-03-17 20:16:31.108 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:31.118 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:31.118 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 122 ms to send, 1 ms to get response, and 125 ms overall
17-03-17 20:16:31.118 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38135, sync = True, waitForSettling = False)
17-03-17 20:16:31.118 -07 000000569 INF: Z Motor: Moving to -0.174571 mm, started at -0.167965 mm, distance = -6.61 um
17-03-17 20:16:31.118 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:31.118 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:16:31.118 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:16:31.128 -07 000000569 INF: FPGA: Xmit ZDACW 38135\n [Z Motor]
17-03-17 20:16:31.128 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:16:31.138 -07 000000569 INF: FPGA: 'ZDACW 38135' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:16:31.138 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:31.138 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:16:31.148 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:16:31.148 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:31.148 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:31.148 -07 000000448 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:16:31.148 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:31.148 -07 000000433 INF: FPGA: Recv ZDACR 38135
17-03-17 20:16:31.158 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:31.158 -07 000000569 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:16:31.158 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:31.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:16:31.188 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:16:31.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:31.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:16:31.198 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:16:31.198 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:31.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:31.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:16:31.198 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:16:31.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:16:31.318 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:31.318 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-17 20:16:31.538 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:16:31.538 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 5 ms to send, 373 ms to get response, and 393 ms overall
17-03-17 20:16:31.568 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:31.578 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:16:31.578 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:16:31.578 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:31.578 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:16:31.578 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 20:16:31.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:32.528 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:32.528 -07 000000569 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:16:32.538 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.538 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:32.558 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:32.558 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:32.558 -07 000000448 INF: Y Motor: Moved to 71.5190 after 1440 ms (table move)
17-03-17 20:16:32.558 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174571 mm (DAC = 38135)
17-03-17 20:16:32.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.558 -07 000000501 INF: FPGA: Recv ZSGSRD 36464
17-03-17 20:16:32.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:32.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.568 -07 000000382 INF: FPGA: Recv ZSGSRD 36458
17-03-17 20:16:32.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36462
17-03-17 20:16:32.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:16:32.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36458
17-03-17 20:16:32.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36469
17-03-17 20:16:32.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.618 -07 000000415 INF: FPGA: Recv ZSGSRD 36461
17-03-17 20:16:32.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.628 -07 000000626 INF: FPGA: Recv ZSGSRD 36462
17-03-17 20:16:32.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.638 -07 000000478 INF: FPGA: Recv ZSGSRD 36463
17-03-17 20:16:32.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:32.648 -07 000000626 INF: FPGA: Recv ZSGSRD 36463
17-03-17 20:16:32.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.658 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:32.658 -07 000000502 INF: FPGA: Recv ZPIEZORD 32757
17-03-17 20:16:32.668 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.2 V.
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36463 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36462 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36458 (-173.7 uncal um), Max = 36469 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36463, posNoise = 6, negNoise = 5
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: After move to -0.174571, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 20:16:32.668 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:32.718 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 20:16:32.718 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:32.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:32.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:32.718 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:32.718 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:32.718 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:32.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:32.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:16:32.718 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:32.728 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:32.728 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:32.738 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:16:32.738 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:16:32.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:32.788 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:32.988 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:32.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:32.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:32.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:33.018 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:33.028 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:33.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:16:33.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:16:33.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:33.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:33.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:16:33.128 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:33.128 -07 000000478 INF: Autofocus start
17-03-17 20:16:33.128 -07 000000478 INF: MeasureProfile start
17-03-17 20:16:33.128 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:33.138 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:33.138 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:33.138 -07 000000478 INF: MeasureProfile done
17-03-17 20:16:33.138 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:16:33.138 -07 000000478 INF: Autofocus finished
17-03-17 20:16:33.338 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:33.338 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:33.348 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174569399336165. ----------
17-03-17 20:16:33.348 -07 000000610 INF: Cycle	36	Tile	15	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:33.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36668, sync = True, waitForSettling = True)
17-03-17 20:16:33.348 -07 000000610 INF: Z Motor: Moving to -0.167855 mm, started at -0.174569 mm, distance = 6.71 um
17-03-17 20:16:33.348 -07 000000610 INF: FPGA: Xmit ZDACW 36668\n [Z Motor]
17-03-17 20:16:33.348 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:16:33.358 -07 000000610 INF: FPGA: 'ZDACW 36668' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:33.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:33.358 -07 000000382 INF: FPGA: Recv ZDACR 36668
17-03-17 20:16:33.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:16:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.528 -07 000000415 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:16:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.538 -07 000000458 INF: FPGA: Recv ZSGSRD 35420
17-03-17 20:16:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-17 20:16:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35424
17-03-17 20:16:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.568 -07 000000415 INF: FPGA: Recv ZSGSRD 35423
17-03-17 20:16:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.578 -07 000000547 INF: FPGA: Recv ZSGSRD 35419
17-03-17 20:16:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:16:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.598 -07 000000448 INF: FPGA: Recv ZSGSRD 35414
17-03-17 20:16:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:33.608 -07 000000512 INF: FPGA: Recv ZSGSRD 35415
17-03-17 20:16:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:33.618 -07 000000478 INF: FPGA: Recv ZPIEZORD 31370
17-03-17 20:16:33.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:33.628 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -8.9 V.
17-03-17 20:16:33.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35419 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35418 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35414 (-167.0 uncal um), Max = 35424 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:16:33.628 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35419, posNoise = 5, negNoise = 5
17-03-17 20:16:33.628 -07 000000610 INF: Z Motor: After move to -0.167855, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:33.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:16:33.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:33.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:33.628 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:33.628 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:33.628 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:33.628 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:33.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:33.628 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:33.628 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:33.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:16:33.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:33.628 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:33.638 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:33.638 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:33.638 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:16:33.638 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:33.648 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:16:33.648 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:33.648 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:16:33.648 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:16:33.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36844 150\n [Camera]
17-03-17 20:16:33.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:34.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:34.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:34.258 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:34.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:34.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:34.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:34.268 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:34.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:16:34.268 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:34.268 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:16:34.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36844 797
17-03-17 20:16:34.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:34.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:16:34.648 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:16:34.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:34.648 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:34.648 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:16:34.658 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:16:34.658 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:34.658 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:34.658 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:16:34.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:16:34.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146
17-03-17 20:16:34.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146
17-03-17 20:16:34.798 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:34.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:34.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:16:34.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146
17-03-17 20:16:34.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146
17-03-17 20:16:34.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:34.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:34.808 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) start.
17-03-17 20:16:34.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:16:34.998 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:34.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36844 150' command took 2 ms to send, 1345 ms to get response, and 1351 ms overall
17-03-17 20:16:34.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:34.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167862521860166. ------
17-03-17 20:16:35.008 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:35.008 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17388 mm
17-03-17 20:16:35.008 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:35.008 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:35.008 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 37984, sync = True, waitForSettling = False)
17-03-17 20:16:35.118 -07 000000458 INF: Z Motor: Moving to -0.173880 mm, started at -0.167863 mm, distance = -6.02 um
17-03-17 20:16:35.118 -07 000000458 INF: FPGA: Xmit ZDACW 37984\n [Z Motor]
17-03-17 20:16:35.118 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:16:35.118 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:16:35.118 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 20:16:35.128 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:35.128 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:16:35.128 -07 000000458 INF: FPGA: 'ZDACW 37984' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:16:35.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:35.138 -07 000000448 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:16:35.148 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:35.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:16:35.148 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:35.148 -07 000000478 INF: FPGA: Recv ZDACR 37984
17-03-17 20:16:35.148 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:35.148 -07 000000433 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:16:35.158 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:16:35.158 -07 000000458 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 20:16:35.158 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:35.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1066012720, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:16:35.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:16:35.188 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:35.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:16:35.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:16:35.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:35.198 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:35.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:35.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:16:35.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:16:35.328 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:35.328 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 20:16:35.528 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:16:35.528 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:16:35.568 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:35.568 -07 000000415 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:16:35.578 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:16:35.578 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:35.578 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:16:35.578 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 20:16:35.628 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.999021,
17-03-17 20:16:36.528 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:36.528 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:16:36.538 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:36.538 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:36.558 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:36.558 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:36.558 -07 000000433 INF: Y Motor: Moved to 72.3496 after 1433 ms (table move)
17-03-17 20:16:36.558 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173880 mm (DAC = 37984)
17-03-17 20:16:36.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.558 -07 000000458 INF: FPGA: Recv ZSGSRD 36356
17-03-17 20:16:36.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:36.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.568 -07 000000501 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:16:36.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36353
17-03-17 20:16:36.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.588 -07 000000458 INF: FPGA: Recv ZSGSRD 36361
17-03-17 20:16:36.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.598 -07 000000626 INF: FPGA: Recv ZSGSRD 36359
17-03-17 20:16:36.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.608 -07 000000448 INF: FPGA: Recv ZSGSRD 36355
17-03-17 20:16:36.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.618 -07 000000502 INF: FPGA: Recv ZSGSRD 36356
17-03-17 20:16:36.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.628 -07 000000618 INF: FPGA: Recv ZSGSRD 36354
17-03-17 20:16:36.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.638 -07 000000458 INF: FPGA: Recv ZSGSRD 36359
17-03-17 20:16:36.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:36.648 -07 000000382 INF: FPGA: Recv ZSGSRD 36354
17-03-17 20:16:36.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.658 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:36.658 -07 000000415 INF: FPGA: Recv ZPIEZORD 32627
17-03-17 20:16:36.668 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.3 V.
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36356 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36356 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36352 (-173.0 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36356, posNoise = 5, negNoise = 4
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: After move to -0.173880, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:16:36.668 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:36.718 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 20:16:36.718 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:36.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:36.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:36.718 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:36.718 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:36.718 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:36.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:36.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:36.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:36.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:36.728 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:36.738 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 17 ms.
17-03-17 20:16:36.738 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 23 ms.
17-03-17 20:16:36.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:36.768 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:36.798 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:36.988 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:36.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:36.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:36.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:37.028 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:37.028 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:37.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:16:37.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:16:37.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:37.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:37.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:16:37.228 -07 000000618 INF: Autofocus start
17-03-17 20:16:37.228 -07 000000618 INF: MeasureProfile start
17-03-17 20:16:37.228 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:37.228 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:37.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:37.238 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:37.248 -07 000000618 INF: MeasureProfile done
17-03-17 20:16:37.248 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:16:37.248 -07 000000618 INF: Autofocus finished
17-03-17 20:16:37.438 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:37.438 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:16:37.448 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173882008636996. ----------
17-03-17 20:16:37.448 -07 000000610 INF: Cycle	36	Tile	16	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:37.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36464, sync = True, waitForSettling = True)
17-03-17 20:16:37.448 -07 000000610 INF: Z Motor: Moving to -0.166921 mm, started at -0.173882 mm, distance = 6.96 um
17-03-17 20:16:37.448 -07 000000610 INF: FPGA: Xmit ZDACW 36464\n [Z Motor]
17-03-17 20:16:37.458 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:16:37.458 -07 000000610 INF: FPGA: 'ZDACW 36464' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:16:37.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:37.458 -07 000000626 INF: FPGA: Recv ZDACR 36464
17-03-17 20:16:37.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:37.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.618 -07 000000415 INF: FPGA: Recv ZSGSRD 35278
17-03-17 20:16:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.628 -07 000000547 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:16:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.638 -07 000000502 INF: FPGA: Recv ZSGSRD 35272
17-03-17 20:16:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:16:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.658 -07 000000569 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:16:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.668 -07 000000547 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:16:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:16:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.688 -07 000000458 INF: FPGA: Recv ZSGSRD 35278
17-03-17 20:16:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.698 -07 000000478 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:16:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:37.708 -07 000000569 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:16:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:37.718 -07 000000433 INF: FPGA: Recv ZPIEZORD 31196
17-03-17 20:16:37.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:37.728 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.0 V.
17-03-17 20:16:37.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35274 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35268 (-166.0 uncal um), Max = 35278 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:16:37.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35274, posNoise = 4, negNoise = 6
17-03-17 20:16:37.728 -07 000000610 INF: Z Motor: After move to -0.166921, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:37.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 20:16:37.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:37.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:37.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:37.728 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:37.728 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:37.728 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:37.728 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:37.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:37.728 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:37.728 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:37.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:16:37.728 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:37.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:16:37.738 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:37.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:37.738 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:37.738 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:37.748 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:16:37.748 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:16:37.748 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:16:37.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36640 150\n [Camera]
17-03-17 20:16:37.948 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:38.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:38.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:38.358 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:38.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:38.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:38.358 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:38.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:38.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:16:38.368 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:38.368 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:16:38.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36640 797
17-03-17 20:16:38.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:16:38.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 20:16:38.738 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-17 20:16:38.738 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:38.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:16:38.738 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:16:38.738 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:38.738 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:38.748 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:38.748 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:16:38.748 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:16:38.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:38.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:38.908 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:38.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:38.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:38.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:38.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:38.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:16:38.918 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:38.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:16:39.088 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:39.098 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:39.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36640 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-17 20:16:39.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:39.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166931011099611. ------
17-03-17 20:16:39.098 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:39.098 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17338 mm
17-03-17 20:16:39.098 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:39.098 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:16:39.098 -07 000000458 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:16:39.098 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:39.108 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:39.108 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:39.108 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37875, sync = True, waitForSettling = False)
17-03-17 20:16:39.108 -07 000000501 INF: Z Motor: Moving to -0.173381 mm, started at -0.166931 mm, distance = -6.45 um
17-03-17 20:16:39.108 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:16:39.118 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:39.118 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:39.118 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:39.118 -07 000000458 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:39.118 -07 000000458 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:16:39.128 -07 000000501 INF: FPGA: Xmit ZDACW 37875\n [Z Motor]
17-03-17 20:16:39.128 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:16:39.138 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:39.138 -07 000000501 INF: FPGA: 'ZDACW 37875' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:39.148 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:39.148 -07 000000547 INF: FPGA: Recv ZDACR 37875
17-03-17 20:16:39.158 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:39.158 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:16:39.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:16:39.308 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:16:39.308 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:39.308 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:39.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:16:39.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:16:39.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:16:39.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:39.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:39.318 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:39.318 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 20:16:39.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:16:39.508 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:16:39.508 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:16:39.548 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:39.548 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:16:39.558 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:39.558 -07 000000458 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:39.558 -07 000000458 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:16:39.558 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-17 20:16:40.508 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:40.508 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:16:40.518 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.518 -07 000000458 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:40.538 -07 000000458 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:40.538 -07 000000458 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:40.538 -07 000000458 INF: Y Motor: Moved to 73.1763 after 1434 ms (table move)
17-03-17 20:16:40.538 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173381 mm (DAC = 37875)
17-03-17 20:16:40.538 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36282
17-03-17 20:16:40.548 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:16:40.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36281
17-03-17 20:16:40.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36273
17-03-17 20:16:40.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.568 -07 000000502 INF: FPGA: Recv ZSGSRD 36281
17-03-17 20:16:40.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36284
17-03-17 20:16:40.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36281
17-03-17 20:16:40.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.598 -07 000000502 INF: FPGA: Recv ZSGSRD 36285
17-03-17 20:16:40.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36278
17-03-17 20:16:40.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.618 -07 000000502 INF: FPGA: Recv ZSGSRD 36279
17-03-17 20:16:40.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.628 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:40.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36276
17-03-17 20:16:40.638 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.638 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:40.638 -07 000000627 INF: FPGA: Recv ZPIEZORD 32518
17-03-17 20:16:40.648 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.3 V.
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36280 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36281 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36273 (-172.5 uncal um), Max = 36285 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36280, posNoise = 5, negNoise = 7
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: After move to -0.173381, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:16:40.648 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:40.698 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:16:40.698 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:40.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:40.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:40.698 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:40.698 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:40.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:40.698 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:40.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:40.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:40.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:40.708 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:40.708 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:16:40.708 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:16:40.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:40.768 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:40.968 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:40.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:40.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:40.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:16:40.998 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.993549,
17-03-17 20:16:41.008 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:41.008 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:41.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 293 ms overall
17-03-17 20:16:41.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:16:41.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:41.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:16:41.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:16:41.108 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:41.108 -07 000000502 INF: Autofocus start
17-03-17 20:16:41.108 -07 000000502 INF: MeasureProfile start
17-03-17 20:16:41.108 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:41.118 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:41.118 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:41.118 -07 000000502 INF: MeasureProfile done
17-03-17 20:16:41.118 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:16:41.118 -07 000000502 INF: Autofocus finished
17-03-17 20:16:41.318 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:41.318 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:41.318 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173393768514222. ----------
17-03-17 20:16:41.318 -07 000000610 INF: Cycle	36	Tile	17	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:41.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36389, sync = True, waitForSettling = True)
17-03-17 20:16:41.328 -07 000000610 INF: Z Motor: Moving to -0.166578 mm, started at -0.173394 mm, distance = 6.82 um
17-03-17 20:16:41.328 -07 000000610 INF: FPGA: Xmit ZDACW 36389\n [Z Motor]
17-03-17 20:16:41.328 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:16:41.338 -07 000000610 INF: FPGA: 'ZDACW 36389' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:41.338 -07 000000618 INF: FPGA: Recv ZDACR 36389
17-03-17 20:16:41.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:41.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.498 -07 000000415 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:16:41.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.508 -07 000000547 INF: FPGA: Recv ZSGSRD 35213
17-03-17 20:16:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:16:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35223
17-03-17 20:16:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.538 -07 000000478 INF: FPGA: Recv ZSGSRD 35222
17-03-17 20:16:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.548 -07 000000626 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:16:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:16:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.568 -07 000000512 INF: FPGA: Recv ZSGSRD 35225
17-03-17 20:16:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35224
17-03-17 20:16:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:41.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35217
17-03-17 20:16:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:41.598 -07 000000448 INF: FPGA: Recv ZPIEZORD 31123
17-03-17 20:16:41.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:41.608 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.0 V.
17-03-17 20:16:41.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35220 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35221 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35213 (-165.7 uncal um), Max = 35225 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:16:41.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35220, posNoise = 5, negNoise = 7
17-03-17 20:16:41.608 -07 000000610 INF: Z Motor: After move to -0.166578, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:41.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:16:41.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:41.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:41.608 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:41.608 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:41.608 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:41.608 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:41.608 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:41.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:41.608 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:41.608 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:41.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:41.608 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:41.618 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:41.618 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:41.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:41.618 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:41.618 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:41.618 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:16:41.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:16:41.628 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:16:41.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36566 150\n [Camera]
17-03-17 20:16:41.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:41.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:42.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:42.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:42.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:42.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:42.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) start.
17-03-17 20:16:42.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:42.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:42.248 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:42.248 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:42.248 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) start.
17-03-17 20:16:42.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36566 797
17-03-17 20:16:42.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:42.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1101434984, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:16:42.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1136857248, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:16:42.638 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:16:42.638 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:42.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:16:42.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:42.638 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:42.638 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:42.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:16:42.648 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:16:42.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:42.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:42.778 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:42.778 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:42.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:16:42.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:42.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:42.788 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:42.788 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:42.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:16:42.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:42.968 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:42.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36566 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:16:42.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:42.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166584103643956. ------
17-03-17 20:16:42.978 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:42.978 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17304 mm
17-03-17 20:16:42.978 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:42.978 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:16:42.978 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:16:42.978 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37801, sync = True, waitForSettling = False)
17-03-17 20:16:42.978 -07 000000569 INF: Z Motor: Moving to -0.173042 mm, started at -0.166584 mm, distance = -6.46 um
17-03-17 20:16:42.978 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:42.988 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:16:42.988 -07 000000569 INF: FPGA: Xmit ZDACW 37801\n [Z Motor]
17-03-17 20:16:42.988 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:16:42.998 -07 000000569 INF: FPGA: 'ZDACW 37801' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:16:42.998 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:42.998 -07 000000382 INF: FPGA: Recv ZDACR 37801
17-03-17 20:16:43.008 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:43.008 -07 000000569 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:16:43.008 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:43.128 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:43.128 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:16:43.128 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-17 20:16:43.128 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:43.128 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:43.128 -07 000000618 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:16:43.138 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:43.188 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 20:16:43.188 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:16:43.188 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:43.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:16:43.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:16:43.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:43.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:43.198 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:16:43.198 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:16:43.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:16:43.328 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:43.328 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 343 ms overall
17-03-17 20:16:43.508 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:16:43.508 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:16:43.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:43.548 -07 000000547 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:16:43.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:43.548 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:43.548 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:16:43.548 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.193 mm/sec
17-03-17 20:16:44.498 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:44.498 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:16:44.508 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:44.508 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:44.518 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:44.518 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:16:44.518 -07 000000618 INF: Y Motor: Moved to 74.0083 after 1539 ms (table move)
17-03-17 20:16:44.528 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173042 mm (DAC = 37801)
17-03-17 20:16:44.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.528 -07 000000512 INF: FPGA: Recv ZSGSRD 36230
17-03-17 20:16:44.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36223
17-03-17 20:16:44.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36220
17-03-17 20:16:44.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36236
17-03-17 20:16:44.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.568 -07 000000547 INF: FPGA: Recv ZSGSRD 36229
17-03-17 20:16:44.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.578 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36229
17-03-17 20:16:44.588 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.588 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36225
17-03-17 20:16:44.598 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.598 -07 000000458 INF: FPGA: Recv ZSGSRD 36226
17-03-17 20:16:44.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.608 -07 000000502 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:16:44.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:44.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36219
17-03-17 20:16:44.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.628 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:44.628 -07 000000618 INF: FPGA: Recv ZPIEZORD 32459
17-03-17 20:16:44.638 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.3 V.
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36226 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36227 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36219 (-172.1 uncal um), Max = 36236 (-172.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36226, posNoise = 10, negNoise = 7
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: After move to -0.173042, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: Settle wait time = 1543 ms, measure time = 110 ms (allowed 150 ms), total time = 1653 ms
17-03-17 20:16:44.638 -07 000000448 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:44.678 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1695 ms
17-03-17 20:16:44.678 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:44.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:44.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:44.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:44.678 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:44.678 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:44.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:44.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:44.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:44.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:44.688 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:44.698 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:16:44.698 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:16:44.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:44.748 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:44.948 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:44.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:44.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:44.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:44.988 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:44.988 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:44.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:16:45.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:16:45.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:45.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:45.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:16:45.088 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:45.088 -07 000000627 INF: Autofocus start
17-03-17 20:16:45.088 -07 000000627 INF: MeasureProfile start
17-03-17 20:16:45.088 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:45.098 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:45.098 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:45.098 -07 000000627 INF: MeasureProfile done
17-03-17 20:16:45.098 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:16:45.098 -07 000000627 INF: Autofocus finished
17-03-17 20:16:45.298 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:45.298 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:45.298 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173046861058567. ----------
17-03-17 20:16:45.298 -07 000000610 INF: Cycle	36	Tile	18	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:45.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36298, sync = True, waitForSettling = True)
17-03-17 20:16:45.308 -07 000000610 INF: Z Motor: Moving to -0.166162 mm, started at -0.173047 mm, distance = 6.89 um
17-03-17 20:16:45.308 -07 000000610 INF: FPGA: Xmit ZDACW 36298\n [Z Motor]
17-03-17 20:16:45.308 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:16:45.318 -07 000000610 INF: FPGA: 'ZDACW 36298' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:45.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:45.318 -07 000000626 INF: FPGA: Recv ZDACR 36298
17-03-17 20:16:45.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:16:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35159
17-03-17 20:16:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35153
17-03-17 20:16:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35156
17-03-17 20:16:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.518 -07 000000569 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:16:45.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35154
17-03-17 20:16:45.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:16:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35153
17-03-17 20:16:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.558 -07 000000512 INF: FPGA: Recv ZSGSRD 35151
17-03-17 20:16:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:45.568 -07 000000458 INF: FPGA: Recv ZSGSRD 35158
17-03-17 20:16:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:45.578 -07 000000569 INF: FPGA: Recv ZPIEZORD 31041
17-03-17 20:16:45.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:45.588 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.1 V.
17-03-17 20:16:45.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35155 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35156 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35151 (-165.3 uncal um), Max = 35159 (-165.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:16:45.588 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35155, posNoise = 4, negNoise = 4
17-03-17 20:16:45.588 -07 000000610 INF: Z Motor: After move to -0.166162, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:45.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:16:45.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:45.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:45.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:45.588 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:45.588 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:45.588 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:45.588 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:45.588 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:45.588 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:45.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:45.588 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:45.588 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:45.598 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:16:45.598 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:45.598 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:16:45.598 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:45.608 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:45.608 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:45.608 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:16:45.608 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:16:45.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36474 150\n [Camera]
17-03-17 20:16:45.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:46.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:46.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:46.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:46.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:46.218 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:46.218 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:46.228 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:46.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:16:46.228 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:46.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:16:46.378 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.981281,
17-03-17 20:16:46.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36474 797
17-03-17 20:16:46.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:46.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:16:46.618 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:16:46.618 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:46.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:46.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:16:46.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:16:46.628 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:46.628 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:46.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:16:46.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:16:46.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:46.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:46.758 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:46.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:46.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:46.768 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:46.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:16:46.768 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:46.768 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:46.768 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) start.
17-03-17 20:16:46.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:46.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:46.948 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:46.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36474 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:16:46.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:16:46.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166166529854741. ------
17-03-17 20:16:47.078 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17253 mm
17-03-17 20:16:47.078 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:47.078 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:47.078 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:16:47.078 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:16:47.078 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37690, sync = True, waitForSettling = False)
17-03-17 20:16:47.078 -07 000000382 INF: Z Motor: Moving to -0.172534 mm, started at -0.166167 mm, distance = -6.37 um
17-03-17 20:16:47.078 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:47.088 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:47.088 -07 000000382 INF: FPGA: Xmit ZDACW 37690\n [Z Motor]
17-03-17 20:16:47.088 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:16:47.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:47.098 -07 000000382 INF: FPGA: 'ZDACW 37690' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:16:47.098 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:16:47.108 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:47.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:16:47.108 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:47.108 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:47.108 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:16:47.118 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:47.118 -07 000000501 INF: FPGA: Recv ZDACR 37690
17-03-17 20:16:47.128 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:47.128 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:47.128 -07 000000382 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:16:47.148 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:16:47.148 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:16:47.148 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:47.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:16:47.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:16:47.148 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:47.158 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:47.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:47.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:16:47.158 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:16:47.308 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:47.308 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:16:47.498 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:16:47.498 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 20:16:47.528 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:47.528 -07 000000458 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:16:47.538 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:16:47.538 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:47.538 -07 000000569 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:16:47.538 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-17 20:16:48.488 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:48.488 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:16:48.498 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:48.498 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:48.508 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:48.508 -07 000000569 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:16:48.508 -07 000000569 INF: Y Motor: Moved to 74.8320 after 1432 ms (table move)
17-03-17 20:16:48.508 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172534 mm (DAC = 37690)
17-03-17 20:16:48.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.518 -07 000000502 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:16:48.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:48.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.528 -07 000000618 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:16:48.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.538 -07 000000382 INF: FPGA: Recv ZSGSRD 36140
17-03-17 20:16:48.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.548 -07 000000618 INF: FPGA: Recv ZSGSRD 36136
17-03-17 20:16:48.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.558 -07 000000547 INF: FPGA: Recv ZSGSRD 36155
17-03-17 20:16:48.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:16:48.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.578 -07 000000618 INF: FPGA: Recv ZSGSRD 36145
17-03-17 20:16:48.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:16:48.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36147
17-03-17 20:16:48.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:48.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36143
17-03-17 20:16:48.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.618 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:48.618 -07 000000458 INF: FPGA: Recv ZPIEZORD 32350
17-03-17 20:16:48.628 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.4 V.
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36147 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36148 (-171.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36136 (-171.6 uncal um), Max = 36155 (-171.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36147, posNoise = 8, negNoise = 11
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: After move to -0.172534, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: Settle wait time = 1435 ms, measure time = 111 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:16:48.628 -07 000000433 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:48.668 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:16:48.668 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:48.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:48.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:48.668 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:48.668 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:48.668 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:48.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:48.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:48.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:48.678 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:48.678 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:48.678 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:16:48.678 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:16:48.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:48.728 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:48.928 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:16:48.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:16:48.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:48.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:16:48.968 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:48.968 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:48.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:16:49.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:16:49.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:49.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:16:49.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:16:49.068 -07 000000512 INF: Autofocus start
17-03-17 20:16:49.068 -07 000000512 INF: MeasureProfile start
17-03-17 20:16:49.068 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:49.068 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:49.078 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:16:49.078 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:49.078 -07 000000512 INF: MeasureProfile done
17-03-17 20:16:49.078 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:16:49.078 -07 000000512 INF: Autofocus finished
17-03-17 20:16:49.278 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:49.278 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:16:49.278 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172539348299368. ----------
17-03-17 20:16:49.278 -07 000000610 INF: Cycle	36	Tile	19	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:49.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36223, sync = True, waitForSettling = True)
17-03-17 20:16:49.288 -07 000000610 INF: Z Motor: Moving to -0.165818 mm, started at -0.172539 mm, distance = 6.72 um
17-03-17 20:16:49.288 -07 000000610 INF: FPGA: Xmit ZDACW 36223\n [Z Motor]
17-03-17 20:16:49.288 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:16:49.298 -07 000000610 INF: FPGA: 'ZDACW 36223' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:49.298 -07 000000478 INF: FPGA: Recv ZDACR 36223
17-03-17 20:16:49.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.458 -07 000000458 INF: FPGA: Recv ZSGSRD 35100
17-03-17 20:16:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.468 -07 000000627 INF: FPGA: Recv ZSGSRD 35099
17-03-17 20:16:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35098
17-03-17 20:16:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35103
17-03-17 20:16:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35107
17-03-17 20:16:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35104
17-03-17 20:16:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35103
17-03-17 20:16:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35109
17-03-17 20:16:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:16:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:49.548 -07 000000569 INF: FPGA: Recv ZSGSRD 35088
17-03-17 20:16:49.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:49.558 -07 000000382 INF: FPGA: Recv ZPIEZORD 31020
17-03-17 20:16:49.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:49.568 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.0 V.
17-03-17 20:16:49.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35102 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35103 (-165.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35088 (-164.9 uncal um), Max = 35109 (-165.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 20:16:49.568 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35102, posNoise = 7, negNoise = 14
17-03-17 20:16:49.568 -07 000000610 INF: Z Motor: After move to -0.165818, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:49.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:16:49.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:49.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:49.568 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:49.568 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:49.568 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:49.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:49.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:49.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:49.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:49.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:49.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:16:49.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:49.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:49.568 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:49.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:16:49.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:49.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 20:16:49.588 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:16:49.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 20:16:49.588 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:16:49.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36400 150\n [Camera]
17-03-17 20:16:49.798 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:50.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:50.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:50.208 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:50.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:50.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:50.218 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:50.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:50.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:16:50.228 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:50.228 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:16:50.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36400 800
17-03-17 20:16:50.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:50.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:16:50.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:16:50.598 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:50.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:16:50.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:16:50.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:50.608 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:50.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:50.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:16:50.608 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:16:50.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:50.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:50.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:50.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:50.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:50.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:50.758 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:50.758 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:16:50.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:50.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:16:50.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:50.948 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:50.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36400 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-17 20:16:51.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:16:51.158 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:16:51.158 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:51.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:16:51.158 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:16:51.158 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:51.158 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:51.168 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:16:51.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:16:51.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:16:51.168 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:16:51.208 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:16:51.208 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:16:51.248 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:16:51.248 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:16:51.248 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:16:51.258 -07 000000458 INF: FPGA: Recv EMCUR 
17-03-17 20:16:51.258 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:16:51.258 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:16:51.738 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.003063,
17-03-17 20:16:51.758 -07 000000501 INF: FPGA: Recv EMIN
17-03-17 20:16:51.758 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-17 20:16:51.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:51.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:51.778 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:16:51.778 -07 000000458 INF: FPGA: Recv EMCUR 
17-03-17 20:16:51.788 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:16:51.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:16:51.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165826046611228. ------
17-03-17 20:16:51.788 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:51.788 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14026 mm
17-03-17 20:16:51.788 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:51.788 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:16:51.788 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 20:16:51.788 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:51.798 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30639, sync = True, waitForSettling = False)
17-03-17 20:16:51.798 -07 000000458 INF: Z Motor: Moving to -0.140256 mm, started at -0.165826 mm, distance = 25.57 um
17-03-17 20:16:51.798 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:51.798 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:16:51.798 -07 000000448 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:16:51.808 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:16:51.808 -07 000000512 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:51.808 -07 000000458 INF: FPGA: Xmit ZDACW 30639\n [Z Motor]
17-03-17 20:16:51.808 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:16:51.808 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:16:51.808 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:16:51.818 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:51.818 -07 000000458 INF: FPGA: 'ZDACW 30639' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:51.828 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:16:51.838 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:51.838 -07 000000433 INF: FPGA: Recv ZDACR 30639
17-03-17 20:16:51.848 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:16:51.848 -07 000000458 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:16:52.018 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:52.018 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:16:53.448 -07 000000501 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:16:53.448 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 20:16:53.448 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:16:53.448 -07 000000512 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:16:53.448 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 20:16:56.298 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:56.298 -07 000000626 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:16:56.308 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:56.308 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:56.328 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:16:56.328 -07 000000512 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:16:56.328 -07 000000512 INF: Y Motor: Moved to 59.9111 after 4540 ms
17-03-17 20:16:56.338 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140256 mm (DAC = 30639)
17-03-17 20:16:56.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.338 -07 000000458 INF: FPGA: Recv ZSGSRD 31127
17-03-17 20:16:56.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:16:56.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.348 -07 000000415 INF: FPGA: Recv ZSGSRD 31124
17-03-17 20:16:56.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.358 -07 000000458 INF: FPGA: Recv ZSGSRD 31126
17-03-17 20:16:56.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.368 -07 000000512 INF: FPGA: Recv ZSGSRD 31120
17-03-17 20:16:56.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.378 -07 000000415 INF: FPGA: Recv ZSGSRD 31119
17-03-17 20:16:56.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.388 -07 000000626 INF: FPGA: Recv ZSGSRD 31119
17-03-17 20:16:56.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.398 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.398 -07 000000415 INF: FPGA: Recv ZSGSRD 31124
17-03-17 20:16:56.408 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.408 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.408 -07 000000618 INF: FPGA: Recv ZSGSRD 31122
17-03-17 20:16:56.418 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.418 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.418 -07 000000458 INF: FPGA: Recv ZSGSRD 31114
17-03-17 20:16:56.428 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:56.428 -07 000000618 INF: FPGA: Recv ZSGSRD 31129
17-03-17 20:16:56.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.438 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:56.438 -07 000000433 INF: FPGA: Recv ZPIEZORD 26786
17-03-17 20:16:56.448 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.675 V. Piezo Error = -9.5 V.
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31122 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31123 (-139.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31114 (-139.4 uncal um), Max = 31129 (-139.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31122, posNoise = 7, negNoise = 8
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: After move to -0.140256, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: Settle wait time = 4542 ms, measure time = 108 ms (allowed 150 ms), total time = 4650 ms
17-03-17 20:16:56.448 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:16:56.498 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:16:56.498 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:16:56.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:56.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:56.498 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:56.498 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:56.498 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:16:56.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:56.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:16:56.498 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:16:56.518 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 20:16:56.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:16:56.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:16:56.518 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:16:56.528 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:16:56.528 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 20:16:56.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:16:56.578 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:16:56.768 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:16:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:16:56.778 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:16:56.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:16:56.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:16:56.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:16:56.818 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:16:56.818 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:16:56.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:16:56.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:16:56.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:56.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:16:56.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:16:56.918 -07 000000448 INF: Image SNR check: start
17-03-17 20:16:56.918 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:56.928 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:56.928 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:16:56.928 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:16:56.948 -07 000000448 INF: Image SNR check: pass  [peak (Max-Min)=63.41]
17-03-17 20:16:56.948 -07 000000448 INF: Autofocus start
17-03-17 20:16:56.948 -07 000000448 INF: MeasureProfile start
17-03-17 20:16:56.968 -07 000000448 INF: MeasureProfile done
17-03-17 20:16:56.968 -07 000000448 INF: X=3  Z correction [um]=-0.009517147
17-03-17 20:16:56.968 -07 000000448 INF: Autofocus finished
17-03-17 20:16:57.108 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.003063,
17-03-17 20:16:57.128 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:16:57.128 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 20:16:57.138 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140257682287019. ----------
17-03-17 20:16:57.138 -07 000000610 INF: Cycle	36	Tile	1	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:16:57.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29149, sync = True, waitForSettling = True)
17-03-17 20:16:57.138 -07 000000610 INF: Z Motor: Moving to -0.133436 mm, started at -0.140258 mm, distance = 6.82 um
17-03-17 20:16:57.148 -07 000000610 INF: FPGA: Xmit ZDACW 29149\n [Z Motor]
17-03-17 20:16:57.148 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:16:57.158 -07 000000610 INF: FPGA: 'ZDACW 29149' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:16:57.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:57.158 -07 000000501 INF: FPGA: Recv ZDACR 29149
17-03-17 20:16:57.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:16:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30058
17-03-17 20:16:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:16:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.328 -07 000000626 INF: FPGA: Recv ZSGSRD 30064
17-03-17 20:16:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.338 -07 000000502 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:16:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.348 -07 000000501 INF: FPGA: Recv ZSGSRD 30056
17-03-17 20:16:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:16:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.368 -07 000000626 INF: FPGA: Recv ZSGSRD 30066
17-03-17 20:16:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30060
17-03-17 20:16:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.388 -07 000000547 INF: FPGA: Recv ZSGSRD 30053
17-03-17 20:16:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.398 -07 000000512 INF: FPGA: Recv ZSGSRD 30060
17-03-17 20:16:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:16:57.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30066
17-03-17 20:16:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:16:57.418 -07 000000502 INF: FPGA: Recv ZPIEZORD 25659
17-03-17 20:16:57.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:16:57.428 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.7 V.
17-03-17 20:16:57.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30061 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30062 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30053 (-132.6 uncal um), Max = 30066 (-132.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:16:57.428 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30061, posNoise = 5, negNoise = 8
17-03-17 20:16:57.428 -07 000000610 INF: Z Motor: After move to -0.133436, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:16:57.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 20:16:57.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:16:57.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:16:57.428 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:16:57.428 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:16:57.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:16:57.428 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:16:57.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:16:57.428 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:16:57.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:16:57.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:16:57.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:16:57.428 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:16:57.438 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:16:57.438 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:16:57.448 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:16:57.448 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:16:57.448 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:16:57.448 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:16:57.458 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:16:57.458 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:16:57.458 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:16:57.458 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 20:16:57.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29326 150\n [Camera]
17-03-17 20:16:57.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:16:58.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:16:58.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:16:58.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:58.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:58.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) start.
17-03-17 20:16:58.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:16:58.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:16:58.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:58.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:58.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) start.
17-03-17 20:16:58.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29326 797
17-03-17 20:16:58.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:16:58.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:16:58.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:16:58.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:58.458 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:16:58.458 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:16:58.458 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:58.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:58.468 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:58.468 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:16:58.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:16:58.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:16:58.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:16:58.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:16:58.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:16:58.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:16:58.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:16:58.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:16:58.618 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:16:58.618 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:16:58.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:16:58.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:16:58.808 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:16:58.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29326 150' command took 2 ms to send, 1336 ms to get response, and 1345 ms overall
17-03-17 20:16:58.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:16:58.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133441593204611. ------
17-03-17 20:16:58.818 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:16:58.818 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13993 mm
17-03-17 20:16:58.818 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:16:58.938 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:16:58.938 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 20:16:58.938 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:16:58.938 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30568, sync = True, waitForSettling = False)
17-03-17 20:16:58.938 -07 000000478 INF: Z Motor: Moving to -0.139931 mm, started at -0.133442 mm, distance = -6.49 um
17-03-17 20:16:58.938 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:16:58.938 -07 000000458 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:16:58.948 -07 000000478 INF: FPGA: Xmit ZDACW 30568\n [Z Motor]
17-03-17 20:16:58.948 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:16:58.958 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:58.958 -07 000000478 INF: FPGA: 'ZDACW 30568' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:16:58.958 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:16:58.968 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:16:58.968 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:16:58.968 -07 000000458 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:58.968 -07 000000458 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:16:58.968 -07 000000458 INF: Y Motor: Moving 1330 steps2
17-03-17 20:16:58.968 -07 000000502 INF: FPGA: Recv ZDACR 30568
17-03-17 20:16:58.978 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:16:58.978 -07 000000478 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:16:58.978 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:16:59.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:16:59.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:16:59.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:59.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:16:59.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:16:59.018 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:16:59.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:16:59.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:16:59.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:16:59.038 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:16:59.138 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:16:59.138 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 20:16:59.348 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:16:59.348 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:16:59.378 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:16:59.378 -07 000000569 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:16:59.388 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:16:59.388 -07 000000458 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:16:59.388 -07 000000458 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:16:59.388 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.149 mm/sec
17-03-17 20:17:00.338 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:00.338 -07 000000382 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:17:00.348 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:00.348 -07 000000458 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:00.368 -07 000000458 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:00.368 -07 000000458 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:00.368 -07 000000458 INF: Y Motor: Moved to 60.7329 after 1426 ms (table move)
17-03-17 20:17:00.368 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139931 mm (DAC = 30568)
17-03-17 20:17:00.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.368 -07 000000569 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:17:00.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:00.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.378 -07 000000618 INF: FPGA: Recv ZSGSRD 31072
17-03-17 20:17:00.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.388 -07 000000547 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:17:00.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.398 -07 000000618 INF: FPGA: Recv ZSGSRD 31072
17-03-17 20:17:00.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.408 -07 000000478 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:17:00.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.418 -07 000000569 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:17:00.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.428 -07 000000618 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:17:00.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.438 -07 000000569 INF: FPGA: Recv ZSGSRD 31070
17-03-17 20:17:00.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.448 -07 000000618 INF: FPGA: Recv ZSGSRD 31065
17-03-17 20:17:00.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:00.458 -07 000000478 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:17:00.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.468 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:00.468 -07 000000501 INF: FPGA: Recv ZPIEZORD 27017
17-03-17 20:17:00.478 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -8.9 V.
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31072 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31072 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31065 (-139.1 uncal um), Max = 31079 (-139.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31072, posNoise = 7, negNoise = 7
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: After move to -0.139931, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 104 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:17:00.478 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:00.528 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 20:17:00.528 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:00.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:00.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:00.528 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:00.528 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:00.528 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:00.528 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:00.528 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:00.528 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:00.538 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:00.538 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:00.548 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:17:00.548 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:17:00.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:00.598 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:00.788 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:00.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:00.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:00.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:00.828 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:00.828 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:00.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:17:00.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:17:00.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:00.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:00.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:17:00.938 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:00.938 -07 000000502 INF: Autofocus start
17-03-17 20:17:00.938 -07 000000502 INF: MeasureProfile start
17-03-17 20:17:00.938 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:00.948 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:00.948 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:00.948 -07 000000502 INF: MeasureProfile done
17-03-17 20:17:00.948 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:17:00.948 -07 000000502 INF: Autofocus finished
17-03-17 20:17:01.148 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:01.148 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:01.148 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139936471679931. ----------
17-03-17 20:17:01.148 -07 000000610 INF: Cycle	36	Tile	2	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:01.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29092, sync = True, waitForSettling = True)
17-03-17 20:17:01.158 -07 000000610 INF: Z Motor: Moving to -0.133175 mm, started at -0.139936 mm, distance = 6.76 um
17-03-17 20:17:01.158 -07 000000610 INF: FPGA: Xmit ZDACW 29092\n [Z Motor]
17-03-17 20:17:01.158 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:17:01.168 -07 000000610 INF: FPGA: 'ZDACW 29092' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:01.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:01.168 -07 000000415 INF: FPGA: Recv ZDACR 29092
17-03-17 20:17:01.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:01.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.328 -07 000000502 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:17:01.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.338 -07 000000382 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:17:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30022
17-03-17 20:17:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30018
17-03-17 20:17:01.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.368 -07 000000458 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:17:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.378 -07 000000382 INF: FPGA: Recv ZSGSRD 30019
17-03-17 20:17:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.388 -07 000000618 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:17:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.398 -07 000000478 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:17:01.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.408 -07 000000458 INF: FPGA: Recv ZSGSRD 30018
17-03-17 20:17:01.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:01.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:17:01.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:01.428 -07 000000448 INF: FPGA: Recv ZPIEZORD 25651
17-03-17 20:17:01.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:01.438 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.6 V.
17-03-17 20:17:01.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30021 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30020 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30014 (-132.4 uncal um), Max = 30026 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:01.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30021, posNoise = 5, negNoise = 7
17-03-17 20:17:01.438 -07 000000610 INF: Z Motor: After move to -0.133175, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:01.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:17:01.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:01.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:01.438 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:01.438 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:01.438 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:01.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:01.438 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:01.438 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:01.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:01.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:01.438 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:01.438 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:01.448 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:01.448 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:01.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:01.448 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:01.458 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:17:01.458 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:17:01.458 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:17:01.458 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:17:01.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29269 150\n [Camera]
17-03-17 20:17:01.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:01.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:02.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:02.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:02.078 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:02.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:02.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:02.078 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:02.088 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:02.088 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:02.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:17:02.088 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:17:02.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29269 797
17-03-17 20:17:02.418 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:02.458 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:17:02.458 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:17:02.458 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:02.458 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:02.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:17:02.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:17:02.468 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:17:02.468 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:02.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:02.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:17:02.488 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.989471,
17-03-17 20:17:02.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:02.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:02.618 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:02.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:02.618 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:02.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:02.618 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:17:02.618 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:02.618 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:02.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) start.
17-03-17 20:17:02.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:17:02.808 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:02.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29269 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall
17-03-17 20:17:02.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:02.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133184624718941. ------
17-03-17 20:17:02.928 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13992 mm
17-03-17 20:17:02.928 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:02.928 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:02.928 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:02.928 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:17:02.928 -07 000000547 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:17:02.928 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30565, sync = True, waitForSettling = False)
17-03-17 20:17:02.928 -07 000000478 INF: Z Motor: Moving to -0.139918 mm, started at -0.133185 mm, distance = -6.73 um
17-03-17 20:17:02.938 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:02.938 -07 000000478 INF: FPGA: Xmit ZDACW 30565\n [Z Motor]
17-03-17 20:17:02.938 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:17:02.948 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:02.948 -07 000000478 INF: FPGA: 'ZDACW 30565' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:17:02.948 -07 000000618 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:17:02.958 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:02.958 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:17:02.958 -07 000000547 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:02.958 -07 000000547 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:02.958 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:17:02.968 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:02.968 -07 000000501 INF: FPGA: Recv ZDACR 30565
17-03-17 20:17:02.978 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:02.978 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:02.978 -07 000000478 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:17:03.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:17:03.018 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:17:03.018 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:03.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:17:03.018 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:17:03.018 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:03.028 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:03.028 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:03.028 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:17:03.028 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:17:03.158 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:03.158 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:17:03.348 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:17:03.348 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:17:03.388 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:03.388 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:17:03.398 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:03.398 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:03.398 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:17:03.398 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 20:17:04.348 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:04.348 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:17:04.358 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:04.358 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:04.378 -07 000000547 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:04.378 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:04.378 -07 000000547 INF: Y Motor: Moved to 61.5640 after 1444 ms (table move)
17-03-17 20:17:04.378 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139918 mm (DAC = 30565)
17-03-17 20:17:04.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.378 -07 000000618 INF: FPGA: Recv ZSGSRD 31064
17-03-17 20:17:04.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:04.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.388 -07 000000512 INF: FPGA: Recv ZSGSRD 31070
17-03-17 20:17:04.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.398 -07 000000618 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:17:04.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.408 -07 000000478 INF: FPGA: Recv ZSGSRD 31066
17-03-17 20:17:04.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.418 -07 000000547 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:17:04.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.428 -07 000000618 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:17:04.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.438 -07 000000627 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:17:04.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.448 -07 000000547 INF: FPGA: Recv ZSGSRD 31068
17-03-17 20:17:04.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.458 -07 000000478 INF: FPGA: Recv ZSGSRD 31065
17-03-17 20:17:04.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:04.468 -07 000000382 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:17:04.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.478 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:04.478 -07 000000547 INF: FPGA: Recv ZPIEZORD 27084
17-03-17 20:17:04.488 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -8.8 V.
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31069 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31069 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31064 (-139.1 uncal um), Max = 31077 (-139.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31069, posNoise = 8, negNoise = 5
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: After move to -0.139918, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:17:04.488 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:04.538 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:17:04.538 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:04.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:04.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:04.538 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:04.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:04.538 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:04.538 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:04.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:17:04.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:04.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:04.548 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:04.548 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:17:04.548 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:17:04.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:04.598 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 20:17:04.798 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 20:17:04.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 20:17:04.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:04.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:04.838 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:04.838 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:04.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:17:04.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:17:04.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:04.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:04.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:17:04.938 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:04.938 -07 000000569 INF: Autofocus start
17-03-17 20:17:04.938 -07 000000569 INF: MeasureProfile start
17-03-17 20:17:04.938 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:04.948 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:04.948 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:04.948 -07 000000569 INF: MeasureProfile done
17-03-17 20:17:04.948 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:17:04.948 -07 000000569 INF: Autofocus finished
17-03-17 20:17:05.148 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:05.148 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:05.148 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139917199043506. ----------
17-03-17 20:17:05.148 -07 000000610 INF: Cycle	36	Tile	3	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:05.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29073, sync = True, waitForSettling = True)
17-03-17 20:17:05.158 -07 000000610 INF: Z Motor: Moving to -0.133088 mm, started at -0.139917 mm, distance = 6.83 um
17-03-17 20:17:05.158 -07 000000610 INF: FPGA: Xmit ZDACW 29073\n [Z Motor]
17-03-17 20:17:05.158 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:17:05.168 -07 000000610 INF: FPGA: 'ZDACW 29073' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:05.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:05.168 -07 000000512 INF: FPGA: Recv ZDACR 29073
17-03-17 20:17:05.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.328 -07 000000547 INF: FPGA: Recv ZSGSRD 30012
17-03-17 20:17:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.338 -07 000000458 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:17:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.348 -07 000000512 INF: FPGA: Recv ZSGSRD 30002
17-03-17 20:17:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30006
17-03-17 20:17:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30007
17-03-17 20:17:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.378 -07 000000448 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:17:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.388 -07 000000501 INF: FPGA: Recv ZSGSRD 30005
17-03-17 20:17:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.398 -07 000000569 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:17:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.408 -07 000000512 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:17:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:05.418 -07 000000448 INF: FPGA: Recv ZSGSRD 30005
17-03-17 20:17:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:05.428 -07 000000501 INF: FPGA: Recv ZPIEZORD 25666
17-03-17 20:17:05.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:05.438 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.5 V.
17-03-17 20:17:05.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30008 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30008 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30002 (-132.3 uncal um), Max = 30013 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:17:05.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30008, posNoise = 5, negNoise = 6
17-03-17 20:17:05.438 -07 000000610 INF: Z Motor: After move to -0.133088, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:05.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:17:05.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:05.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:05.438 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:05.438 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:05.438 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:05.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:05.438 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:05.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:05.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:17:05.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:05.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:05.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:05.448 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:05.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:05.448 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:05.448 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:05.458 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:17:05.458 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:05.458 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:05.458 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:05.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29249 150\n [Camera]
17-03-17 20:17:05.658 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:06.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:06.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:06.068 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:06.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:06.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:06.078 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:06.078 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:06.078 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:17:06.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:06.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:17:06.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29249 797
17-03-17 20:17:06.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:06.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:17:06.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:17:06.468 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:06.468 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:06.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:17:06.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:17:06.478 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:17:06.478 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:06.478 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:06.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:17:06.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:06.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:06.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:06.618 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:06.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:06.618 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:06.618 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:06.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:17:06.618 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:06.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:17:06.768 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:06.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:06.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:06.798 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:06.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29249 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-17 20:17:06.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:06.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133101109961098. ------
17-03-17 20:17:06.808 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:06.808 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13914 mm
17-03-17 20:17:06.808 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:06.808 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:17:06.808 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:17:06.808 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30395, sync = True, waitForSettling = False)
17-03-17 20:17:06.808 -07 000000547 INF: Z Motor: Moving to -0.139139 mm, started at -0.133101 mm, distance = -6.04 um
17-03-17 20:17:06.808 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:06.818 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:06.818 -07 000000547 INF: FPGA: Xmit ZDACW 30395\n [Z Motor]
17-03-17 20:17:06.818 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:17:06.828 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:06.828 -07 000000547 INF: FPGA: 'ZDACW 30395' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:06.828 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:17:06.838 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:06.838 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:17:06.838 -07 000000512 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:06.838 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:06.838 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:17:06.848 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:06.848 -07 000000626 INF: FPGA: Recv ZDACR 30395
17-03-17 20:17:06.858 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:06.858 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:06.858 -07 000000547 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:17:07.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:17:07.008 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:17:07.008 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:07.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:17:07.018 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:17:07.018 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:07.018 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:07.018 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:07.018 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:17:07.018 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:17:07.038 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:07.038 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:17:07.228 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:17:07.228 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:17:07.268 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:07.268 -07 000000547 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:17:07.278 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:07.278 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:07.278 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:17:07.278 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 20:17:07.848 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.973092,
17-03-17 20:17:08.228 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:08.228 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:17:08.238 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:08.238 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:08.258 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:08.258 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:08.258 -07 000000512 INF: Y Motor: Moved to 62.3955 after 1445 ms (table move)
17-03-17 20:17:08.258 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139139 mm (DAC = 30395)
17-03-17 20:17:08.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.258 -07 000000569 INF: FPGA: Recv ZSGSRD 30954
17-03-17 20:17:08.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:08.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30953
17-03-17 20:17:08.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.278 -07 000000618 INF: FPGA: Recv ZSGSRD 30952
17-03-17 20:17:08.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.288 -07 000000478 INF: FPGA: Recv ZSGSRD 30957
17-03-17 20:17:08.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.298 -07 000000458 INF: FPGA: Recv ZSGSRD 30951
17-03-17 20:17:08.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.308 -07 000000415 INF: FPGA: Recv ZSGSRD 30958
17-03-17 20:17:08.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.318 -07 000000547 INF: FPGA: Recv ZSGSRD 30955
17-03-17 20:17:08.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:08.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.328 -07 000000458 INF: FPGA: Recv ZSGSRD 30948
17-03-17 20:17:08.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.338 -07 000000547 INF: FPGA: Recv ZSGSRD 30948
17-03-17 20:17:08.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:08.348 -07 000000433 INF: FPGA: Recv ZSGSRD 30949
17-03-17 20:17:08.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.358 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:08.358 -07 000000458 INF: FPGA: Recv ZPIEZORD 26922
17-03-17 20:17:08.368 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -8.9 V.
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30952 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30948 (-138.3 uncal um), Max = 30958 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 6, negNoise = 4
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: After move to -0.139139, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:17:08.368 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:08.418 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:17:08.418 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:08.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:08.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:08.418 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:08.418 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:08.418 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:08.418 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:08.418 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:08.418 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:08.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:08.428 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:08.438 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:17:08.438 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:17:08.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:08.488 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:08.688 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:08.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:08.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:08.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:17:08.728 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:08.728 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:08.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:17:08.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:17:08.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:08.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:08.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:17:08.828 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:08.828 -07 000000415 INF: Autofocus start
17-03-17 20:17:08.828 -07 000000415 INF: MeasureProfile start
17-03-17 20:17:08.828 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:08.838 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:08.838 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:08.838 -07 000000415 INF: MeasureProfile done
17-03-17 20:17:08.838 -07 000000415 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:17:08.838 -07 000000415 INF: Autofocus finished
17-03-17 20:17:09.038 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:09.038 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:09.038 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.13916556622292. ----------
17-03-17 20:17:09.038 -07 000000610 INF: Cycle	36	Tile	4	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:09.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28936, sync = True, waitForSettling = True)
17-03-17 20:17:09.048 -07 000000610 INF: Z Motor: Moving to -0.132461 mm, started at -0.139166 mm, distance = 6.71 um
17-03-17 20:17:09.048 -07 000000610 INF: FPGA: Xmit ZDACW 28936\n [Z Motor]
17-03-17 20:17:09.048 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:17:09.058 -07 000000610 INF: FPGA: 'ZDACW 28936' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:09.058 -07 000000458 INF: FPGA: Recv ZDACR 28936
17-03-17 20:17:09.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29910
17-03-17 20:17:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.228 -07 000000618 INF: FPGA: Recv ZSGSRD 29910
17-03-17 20:17:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:17:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29917
17-03-17 20:17:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29911
17-03-17 20:17:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.268 -07 000000547 INF: FPGA: Recv ZSGSRD 29910
17-03-17 20:17:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29912
17-03-17 20:17:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.288 -07 000000502 INF: FPGA: Recv ZSGSRD 29911
17-03-17 20:17:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.298 -07 000000626 INF: FPGA: Recv ZSGSRD 29914
17-03-17 20:17:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:09.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:17:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:09.318 -07 000000501 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 20:17:09.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:09.328 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.5 V.
17-03-17 20:17:09.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29911 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29910 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29902 (-131.6 uncal um), Max = 29917 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:17:09.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29911, posNoise = 6, negNoise = 9
17-03-17 20:17:09.328 -07 000000610 INF: Z Motor: After move to -0.132461, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:09.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:17:09.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:09.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:09.328 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:09.328 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:09.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:09.328 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:09.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:09.328 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:09.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:09.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:09.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:09.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:09.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:09.338 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:09.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:09.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:09.338 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:17:09.338 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:17:09.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:09.348 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:09.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29113 150\n [Camera]
17-03-17 20:17:09.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:09.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:09.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:09.958 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:09.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:09.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) start.
17-03-17 20:17:09.958 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:09.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:09.968 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:09.968 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:09.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) start.
17-03-17 20:17:10.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29113 797
17-03-17 20:17:10.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:17:10.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:17:10.338 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:17:10.338 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:10.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:17:10.338 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:17:10.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:10.348 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:10.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:17:10.348 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:10.348 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:17:10.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:17:10.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:17:10.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:10.508 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:10.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:17:10.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1149
17-03-17 20:17:10.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1149
17-03-17 20:17:10.508 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:10.508 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:10.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:17:10.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:10.688 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:10.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29113 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-17 20:17:10.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:10.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132477961383347. ------
17-03-17 20:17:10.818 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:10.818 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13910 mm
17-03-17 20:17:10.818 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:10.818 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:17:10.818 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:17:10.818 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:10.818 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30386, sync = True, waitForSettling = False)
17-03-17 20:17:10.818 -07 000000415 INF: Z Motor: Moving to -0.139098 mm, started at -0.132478 mm, distance = -6.62 um
17-03-17 20:17:10.828 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:10.828 -07 000000415 INF: FPGA: Xmit ZDACW 30386\n [Z Motor]
17-03-17 20:17:10.828 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:17:10.838 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:10.838 -07 000000415 INF: FPGA: 'ZDACW 30386' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:17:10.838 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:17:10.848 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:17:10.848 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:10.848 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:10.848 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:10.848 -07 000000512 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:17:10.858 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:10.858 -07 000000448 INF: FPGA: Recv ZDACR 30386
17-03-17 20:17:10.868 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:10.868 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:10.868 -07 000000415 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:17:10.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:17:10.908 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:17:10.908 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:10.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:17:10.908 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:17:10.908 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:10.918 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:10.918 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:17:10.918 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:17:10.918 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:17:11.048 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:11.048 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:17:11.238 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:17:11.238 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:11.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:11.278 -07 000000433 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:17:11.288 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:11.288 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:11.288 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:17:11.288 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 20:17:11.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:12.238 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:12.238 -07 000000415 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:17:12.248 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.248 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:12.268 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:12.268 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:12.268 -07 000000512 INF: Y Motor: Moved to 63.2241 after 1444 ms (table move)
17-03-17 20:17:12.268 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139098 mm (DAC = 30386)
17-03-17 20:17:12.268 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.278 -07 000000433 INF: FPGA: Recv ZSGSRD 30950
17-03-17 20:17:12.278 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:17:12.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30942
17-03-17 20:17:12.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.288 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.288 -07 000000433 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:17:12.298 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.298 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.298 -07 000000458 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:17:12.308 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.308 -07 000000415 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:17:12.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.318 -07 000000501 INF: FPGA: Recv ZSGSRD 30947
17-03-17 20:17:12.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.328 -07 000000415 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:17:12.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:17:12.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.348 -07 000000415 INF: FPGA: Recv ZSGSRD 30943
17-03-17 20:17:12.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:12.358 -07 000000433 INF: FPGA: Recv ZSGSRD 30944
17-03-17 20:17:12.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.368 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:12.368 -07 000000569 INF: FPGA: Recv ZPIEZORD 26949
17-03-17 20:17:12.378 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -8.8 V.
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30942 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30942 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30935 (-138.3 uncal um), Max = 30950 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30942, posNoise = 8, negNoise = 7
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: After move to -0.139098, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:17:12.378 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:12.428 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:17:12.428 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:12.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:12.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:12.428 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:12.428 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:12.428 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:12.428 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:12.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:12.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:12.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:12.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:12.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:17:12.438 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:17:12.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:12.488 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:12.688 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:12.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:12.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:12.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:12.728 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:12.728 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:12.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:17:12.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:17:12.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:12.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:12.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:17:12.828 -07 000000627 INF: Autofocus start
17-03-17 20:17:12.828 -07 000000627 INF: MeasureProfile start
17-03-17 20:17:12.828 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:12.828 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:12.838 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:12.838 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:12.838 -07 000000627 INF: MeasureProfile done
17-03-17 20:17:12.838 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:17:12.838 -07 000000627 INF: Autofocus finished
17-03-17 20:17:13.038 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:13.038 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:17:13.048 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139101324101503. ----------
17-03-17 20:17:13.048 -07 000000610 INF: Cycle	36	Tile	5	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:13.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = True)
17-03-17 20:17:13.058 -07 000000610 INF: Z Motor: Moving to -0.132209 mm, started at -0.139101 mm, distance = 6.89 um
17-03-17 20:17:13.058 -07 000000610 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-17 20:17:13.058 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:17:13.068 -07 000000610 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:13.068 -07 000000547 INF: FPGA: Recv ZDACR 28881
17-03-17 20:17:13.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:13.218 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.971733,
17-03-17 20:17:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29867
17-03-17 20:17:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.238 -07 000000618 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:17:13.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29872
17-03-17 20:17:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:17:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.288 -07 000000547 INF: FPGA: Recv ZSGSRD 29870
17-03-17 20:17:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:13.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.298 -07 000000448 INF: FPGA: Recv ZSGSRD 29867
17-03-17 20:17:13.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.308 -07 000000569 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:17:13.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.318 -07 000000448 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:17:13.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.328 -07 000000627 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:17:13.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:17:13.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:13.348 -07 000000448 INF: FPGA: Recv ZSGSRD 29869
17-03-17 20:17:13.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:13.358 -07 000000502 INF: FPGA: Recv ZPIEZORD 25541
17-03-17 20:17:13.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:13.368 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.5 V.
17-03-17 20:17:13.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29871 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29872 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29867 (-131.4 uncal um), Max = 29876 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:17:13.368 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29871, posNoise = 5, negNoise = 4
17-03-17 20:17:13.368 -07 000000610 INF: Z Motor: After move to -0.132209, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:13.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 312 ms)
17-03-17 20:17:13.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:13.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:13.368 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:13.368 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:13.368 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:13.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:13.368 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:13.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:13.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:13.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:13.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:13.368 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:13.378 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:13.378 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:13.378 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:13.378 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:13.388 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:17:13.388 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:17:13.388 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:17:13.388 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:17:13.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29057 150\n [Camera]
17-03-17 20:17:13.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:14.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:17:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:17:14.008 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:14.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:17:14.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:17:14.008 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:14.018 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:14.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:17:14.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:14.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:17:14.198 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 797
17-03-17 20:17:14.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:14.398 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:17:14.398 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:17:14.398 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:14.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:17:14.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:17:14.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:14.398 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:14.398 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:14.398 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:17:14.408 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:17:14.548 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:14.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:14.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:14.548 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:14.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:14.548 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:14.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:17:14.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:14.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:14.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) start.
17-03-17 20:17:14.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:14.738 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:14.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29057 150' command took 2 ms to send, 1333 ms to get response, and 1344 ms overall
17-03-17 20:17:14.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:14.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132220992897677. ------
17-03-17 20:17:14.858 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:14.858 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13869 mm
17-03-17 20:17:14.858 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:14.858 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:14.858 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:17:14.858 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:17:14.858 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30297, sync = True, waitForSettling = False)
17-03-17 20:17:14.858 -07 000000512 INF: Z Motor: Moving to -0.138691 mm, started at -0.132221 mm, distance = -6.47 um
17-03-17 20:17:14.868 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:14.868 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:14.868 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:17:14.878 -07 000000512 INF: FPGA: Xmit ZDACW 30297\n [Z Motor]
17-03-17 20:17:14.878 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:17:14.878 -07 000000569 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:14.878 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:17:14.878 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:14.878 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:17:14.888 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:14.888 -07 000000512 INF: FPGA: 'ZDACW 30297' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:17:14.898 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:14.908 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:14.908 -07 000000448 INF: FPGA: Recv ZDACR 30297
17-03-17 20:17:14.918 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:14.918 -07 000000512 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:17:14.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:17:14.948 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:17:14.948 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:14.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1061818416, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:17:14.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:17:14.948 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:14.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:14.958 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:17:14.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:14.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:17:15.088 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:15.088 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:17:15.268 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:17:15.268 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:17:15.308 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:15.308 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:17:15.318 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:15.318 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:15.318 -07 000000569 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:17:15.318 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 20:17:16.268 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:16.268 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:17:16.278 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:16.278 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:16.288 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:16.288 -07 000000569 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:16.288 -07 000000569 INF: Y Motor: Moved to 64.0571 after 1433 ms (table move)
17-03-17 20:17:16.298 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138691 mm (DAC = 30297)
17-03-17 20:17:16.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.298 -07 000000512 INF: FPGA: Recv ZSGSRD 30883
17-03-17 20:17:16.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:16.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.308 -07 000000627 INF: FPGA: Recv ZSGSRD 30878
17-03-17 20:17:16.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:17:16.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.328 -07 000000627 INF: FPGA: Recv ZSGSRD 30882
17-03-17 20:17:16.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.338 -07 000000448 INF: FPGA: Recv ZSGSRD 30876
17-03-17 20:17:16.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.348 -07 000000627 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:17:16.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.358 -07 000000512 INF: FPGA: Recv ZSGSRD 30878
17-03-17 20:17:16.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.368 -07 000000627 INF: FPGA: Recv ZSGSRD 30874
17-03-17 20:17:16.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.378 -07 000000448 INF: FPGA: Recv ZSGSRD 30873
17-03-17 20:17:16.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:16.388 -07 000000627 INF: FPGA: Recv ZSGSRD 30875
17-03-17 20:17:16.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.398 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:16.398 -07 000000448 INF: FPGA: Recv ZPIEZORD 26883
17-03-17 20:17:16.408 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.8 V.
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30880 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30878 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30873 (-137.9 uncal um), Max = 30890 (-138.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30880, posNoise = 10, negNoise = 7
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: After move to -0.138691, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:17:16.408 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:16.458 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:17:16.458 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:16.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:16.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:16.458 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:16.458 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:16.458 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:16.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:16.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:16.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:16.468 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:16.468 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:16.478 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:17:16.478 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:17:16.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:16.528 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:16.728 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:16.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:16.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:16.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:16.768 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:16.768 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:16.768 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:16.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 20:17:16.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:17:16.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:16.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:16.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:17:16.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:16.868 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:16.868 -07 000000569 INF: Autofocus start
17-03-17 20:17:16.868 -07 000000569 INF: MeasureProfile start
17-03-17 20:17:16.868 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:16.878 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:16.878 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:16.878 -07 000000569 INF: MeasureProfile done
17-03-17 20:17:16.878 -07 000000569 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 20:17:16.878 -07 000000569 INF: Autofocus finished
17-03-17 20:17:17.078 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:17.078 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:17:17.078 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138703022948713. ----------
17-03-17 20:17:17.078 -07 000000610 INF: Cycle	36	Tile	6	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:17.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28802, sync = True, waitForSettling = True)
17-03-17 20:17:17.088 -07 000000610 INF: Z Motor: Moving to -0.131847 mm, started at -0.138703 mm, distance = 6.86 um
17-03-17 20:17:17.088 -07 000000610 INF: FPGA: Xmit ZDACW 28802\n [Z Motor]
17-03-17 20:17:17.088 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:17:17.098 -07 000000610 INF: FPGA: 'ZDACW 28802' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:17.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:17.098 -07 000000478 INF: FPGA: Recv ZDACR 28802
17-03-17 20:17:17.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:17:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:17.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:17:17.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.278 -07 000000448 INF: FPGA: Recv ZSGSRD 29814
17-03-17 20:17:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.288 -07 000000502 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:17:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29816
17-03-17 20:17:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.308 -07 000000627 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:17:17.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.318 -07 000000502 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:17:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:17:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29814
17-03-17 20:17:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:17.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:17:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:17.358 -07 000000448 INF: FPGA: Recv ZPIEZORD 25492
17-03-17 20:17:17.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:17.368 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.5 V.
17-03-17 20:17:17.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29812 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29808 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:17:17.368 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29812, posNoise = 4, negNoise = 4
17-03-17 20:17:17.368 -07 000000610 INF: Z Motor: After move to -0.131847, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:17.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:17:17.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:17.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:17.368 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:17.368 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:17.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:17.368 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:17.368 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:17.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:17.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:17.368 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:17.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:17.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:17.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:17:17.378 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:17.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:17:17.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:17.388 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:17.388 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:17:17.388 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:17.388 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:17:17.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28979 150\n [Camera]
17-03-17 20:17:17.588 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:17.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:17.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:17.998 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:18.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:18.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:17:18.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:18.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:18.008 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:18.018 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:18.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:17:18.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 797
17-03-17 20:17:18.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:18.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:17:18.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:17:18.378 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:18.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:18.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:17:18.388 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:17:18.388 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:17:18.388 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:18.388 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:18.398 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:17:18.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:18.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:18.538 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:18.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:18.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:18.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:18.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:18.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:17:18.548 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:18.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:17:18.608 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.978563,
17-03-17 20:17:18.728 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:18.728 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:18.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28979 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:17:18.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:18.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131841964381313. ------
17-03-17 20:17:18.738 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:18.738 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13849 mm
17-03-17 20:17:18.738 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:18.738 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:17:18.738 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:17:18.738 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30252, sync = True, waitForSettling = False)
17-03-17 20:17:18.738 -07 000000512 INF: Z Motor: Moving to -0.138485 mm, started at -0.131842 mm, distance = -6.64 um
17-03-17 20:17:18.738 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:18.748 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:18.748 -07 000000512 INF: FPGA: Xmit ZDACW 30252\n [Z Motor]
17-03-17 20:17:18.748 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:17:18.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:18.758 -07 000000512 INF: FPGA: 'ZDACW 30252' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:17:18.758 -07 000000415 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:17:18.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:17:18.768 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:18.768 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:18.768 -07 000000502 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:17:18.768 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:18.778 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:18.778 -07 000000618 INF: FPGA: Recv ZDACR 30252
17-03-17 20:17:18.788 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:17:18.788 -07 000000512 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:17:18.788 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:18.948 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:17:18.948 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:17:18.948 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:18.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:17:18.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:17:18.948 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:18.948 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:18.948 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:17:18.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:18.958 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:17:18.968 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:18.968 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:17:19.158 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:17:19.158 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:19.198 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:19.208 -07 000000478 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:17:19.208 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:17:19.208 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:19.208 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:17:19.208 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 20:17:20.158 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:20.158 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:17:20.168 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:20.168 -07 000000502 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:20.188 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:20.188 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:17:20.188 -07 000000502 INF: Y Motor: Moved to 64.8794 after 1446 ms (table move)
17-03-17 20:17:20.188 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138485 mm (DAC = 30252)
17-03-17 20:17:20.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.188 -07 000000433 INF: FPGA: Recv ZSGSRD 30851
17-03-17 20:17:20.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:20.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30847
17-03-17 20:17:20.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.208 -07 000000569 INF: FPGA: Recv ZSGSRD 30847
17-03-17 20:17:20.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30845
17-03-17 20:17:20.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.228 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30854
17-03-17 20:17:20.238 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.238 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.238 -07 000000478 INF: FPGA: Recv ZSGSRD 30851
17-03-17 20:17:20.248 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.248 -07 000000382 INF: FPGA: Recv ZSGSRD 30845
17-03-17 20:17:20.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.258 -07 000000478 INF: FPGA: Recv ZSGSRD 30840
17-03-17 20:17:20.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.268 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30843
17-03-17 20:17:20.278 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:20.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30850
17-03-17 20:17:20.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.288 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:20.288 -07 000000478 INF: FPGA: Recv ZPIEZORD 26834
17-03-17 20:17:20.298 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -8.8 V.
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30847 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30847 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30840 (-137.6 uncal um), Max = 30854 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30847, posNoise = 7, negNoise = 7
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: After move to -0.138485, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:17:20.298 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:20.348 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:17:20.348 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:20.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:20.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:20.348 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:20.348 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:20.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:20.348 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:20.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:20.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:20.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:20.358 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:20.368 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:17:20.368 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:17:20.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:20.418 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:20.618 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:20.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:20.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:20.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:17:20.658 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:20.658 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:20.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:17:20.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:17:20.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:20.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:20.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:17:20.758 -07 000000512 INF: Autofocus start
17-03-17 20:17:20.758 -07 000000512 INF: MeasureProfile start
17-03-17 20:17:20.758 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:20.758 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:20.768 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:20.768 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:20.768 -07 000000512 INF: MeasureProfile done
17-03-17 20:17:20.768 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:17:20.768 -07 000000512 INF: Autofocus finished
17-03-17 20:17:20.968 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:20.968 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:20.968 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138491023948035. ----------
17-03-17 20:17:20.968 -07 000000610 INF: Cycle	36	Tile	7	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:20.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28760, sync = True, waitForSettling = True)
17-03-17 20:17:20.978 -07 000000610 INF: Z Motor: Moving to -0.131655 mm, started at -0.138491 mm, distance = 6.84 um
17-03-17 20:17:20.978 -07 000000610 INF: FPGA: Xmit ZDACW 28760\n [Z Motor]
17-03-17 20:17:20.978 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:17:20.988 -07 000000610 INF: FPGA: 'ZDACW 28760' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:20.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:20.988 -07 000000618 INF: FPGA: Recv ZDACR 28760
17-03-17 20:17:20.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:20.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:21.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.148 -07 000000433 INF: FPGA: Recv ZSGSRD 29782
17-03-17 20:17:21.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:17:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.168 -07 000000547 INF: FPGA: Recv ZSGSRD 29785
17-03-17 20:17:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29780
17-03-17 20:17:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.188 -07 000000433 INF: FPGA: Recv ZSGSRD 29787
17-03-17 20:17:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29784
17-03-17 20:17:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29786
17-03-17 20:17:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29785
17-03-17 20:17:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29779
17-03-17 20:17:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:21.238 -07 000000478 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:17:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:21.248 -07 000000547 INF: FPGA: Recv ZPIEZORD 25441
17-03-17 20:17:21.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:21.258 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.5 V.
17-03-17 20:17:21.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29785 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29779 (-130.8 uncal um), Max = 29788 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:21.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 4, negNoise = 5
17-03-17 20:17:21.258 -07 000000610 INF: Z Motor: After move to -0.131655, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:21.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:17:21.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:21.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:21.258 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:21.258 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:21.258 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:21.258 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:21.258 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:21.258 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:21.258 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:17:21.258 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:21.258 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:21.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:21.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:21.268 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:21.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:21.268 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:21.278 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:17:21.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:21.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:21.278 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:17:21.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28936 150\n [Camera]
17-03-17 20:17:21.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:21.768 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:21.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:21.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:21.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:21.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:21.898 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:21.898 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:21.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) start.
17-03-17 20:17:21.898 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:21.898 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:21.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) start.
17-03-17 20:17:22.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28936 797
17-03-17 20:17:22.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:22.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1132662944, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:17:22.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:17:22.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:22.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1097240680, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:17:22.278 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:17:22.278 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:22.278 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:22.278 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:22.278 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:17:22.288 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:17:22.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:22.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:22.428 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:22.428 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:22.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:17:22.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:22.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:22.438 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:22.438 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:22.438 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:17:22.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:22.618 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:22.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28936 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-17 20:17:22.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:22.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131662086441343. ------
17-03-17 20:17:22.748 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13821 mm
17-03-17 20:17:22.748 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:22.748 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:22.748 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:17:22.748 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30192, sync = True, waitForSettling = False)
17-03-17 20:17:22.748 -07 000000448 INF: Z Motor: Moving to -0.138210 mm, started at -0.131662 mm, distance = -6.55 um
17-03-17 20:17:22.748 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 20:17:22.758 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:22.758 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:22.758 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:22.758 -07 000000502 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:17:22.768 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:22.768 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:22.768 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:22.768 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:22.768 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:17:22.778 -07 000000448 INF: FPGA: Xmit ZDACW 30192\n [Z Motor]
17-03-17 20:17:22.778 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:17:22.788 -07 000000448 INF: FPGA: 'ZDACW 30192' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:17:22.788 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:22.798 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:22.798 -07 000000547 INF: FPGA: Recv ZDACR 30192
17-03-17 20:17:22.808 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:22.808 -07 000000448 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:17:22.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:17:22.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:17:22.828 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:22.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:17:22.828 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:17:22.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:22.828 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:22.828 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:17:22.828 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:17:22.838 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:17:22.968 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:22.968 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 20:17:23.158 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:17:23.158 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:23.198 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:23.198 -07 000000502 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:17:23.208 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:23.208 -07 000000512 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:23.208 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:17:23.208 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 20:17:23.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.011254,
17-03-17 20:17:24.158 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:24.158 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:17:24.168 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:24.168 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:24.188 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:24.188 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:17:24.188 -07 000000512 INF: Y Motor: Moved to 65.7144 after 1434 ms (table move)
17-03-17 20:17:24.188 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138210 mm (DAC = 30192)
17-03-17 20:17:24.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30811
17-03-17 20:17:24.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:17:24.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30806
17-03-17 20:17:24.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:24.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30806
17-03-17 20:17:24.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.218 -07 000000512 INF: FPGA: Recv ZSGSRD 30802
17-03-17 20:17:24.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.228 -07 000000433 INF: FPGA: Recv ZSGSRD 30804
17-03-17 20:17:24.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.238 -07 000000512 INF: FPGA: Recv ZSGSRD 30807
17-03-17 20:17:24.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.248 -07 000000512 INF: FPGA: Recv ZSGSRD 30804
17-03-17 20:17:24.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.258 -07 000000433 INF: FPGA: Recv ZSGSRD 30799
17-03-17 20:17:24.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.268 -07 000000433 INF: FPGA: Recv ZSGSRD 30800
17-03-17 20:17:24.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:24.278 -07 000000433 INF: FPGA: Recv ZSGSRD 30807
17-03-17 20:17:24.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.288 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:24.288 -07 000000415 INF: FPGA: Recv ZPIEZORD 26796
17-03-17 20:17:24.298 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -8.8 V.
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30805 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30805 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30799 (-137.4 uncal um), Max = 30811 (-137.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30805, posNoise = 6, negNoise = 6
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: After move to -0.138210, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: Settle wait time = 1439 ms, measure time = 102 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:17:24.298 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:24.348 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:17:24.348 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:24.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:24.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:24.348 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:24.348 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:24.348 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:24.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:24.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:24.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:24.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:24.358 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:24.368 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:17:24.368 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:17:24.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:24.418 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:17:24.618 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:17:24.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:17:24.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:24.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:24.648 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:24.658 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:24.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:17:24.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:17:24.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:24.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:17:24.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:17:24.758 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:24.758 -07 000000382 INF: Autofocus start
17-03-17 20:17:24.758 -07 000000382 INF: MeasureProfile start
17-03-17 20:17:24.758 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:24.768 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:24.768 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:24.768 -07 000000382 INF: MeasureProfile done
17-03-17 20:17:24.768 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:17:24.768 -07 000000382 INF: Autofocus finished
17-03-17 20:17:24.968 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:24.968 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:24.968 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138221207038081. ----------
17-03-17 20:17:24.978 -07 000000610 INF: Cycle	36	Tile	8	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:24.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28699, sync = True, waitForSettling = True)
17-03-17 20:17:24.978 -07 000000610 INF: Z Motor: Moving to -0.131376 mm, started at -0.138221 mm, distance = 6.85 um
17-03-17 20:17:24.978 -07 000000610 INF: FPGA: Xmit ZDACW 28699\n [Z Motor]
17-03-17 20:17:24.978 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:17:24.988 -07 000000610 INF: FPGA: 'ZDACW 28699' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:24.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:24.988 -07 000000569 INF: FPGA: Recv ZDACR 28699
17-03-17 20:17:24.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:24.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.148 -07 000000569 INF: FPGA: Recv ZSGSRD 29738
17-03-17 20:17:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29748
17-03-17 20:17:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29743
17-03-17 20:17:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29738
17-03-17 20:17:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29736
17-03-17 20:17:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.198 -07 000000512 INF: FPGA: Recv ZSGSRD 29742
17-03-17 20:17:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29737
17-03-17 20:17:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.218 -07 000000512 INF: FPGA: Recv ZSGSRD 29738
17-03-17 20:17:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29742
17-03-17 20:17:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:25.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29740
17-03-17 20:17:25.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:25.248 -07 000000547 INF: FPGA: Recv ZPIEZORD 25390
17-03-17 20:17:25.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:25.258 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.6 V.
17-03-17 20:17:25.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29740 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29739 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29736 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:17:25.258 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29740, posNoise = 8, negNoise = 4
17-03-17 20:17:25.258 -07 000000610 INF: Z Motor: After move to -0.131376, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:25.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:17:25.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:25.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:25.258 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:25.258 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:25.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:25.258 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:25.258 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:25.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:25.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:25.258 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:25.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:17:25.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:25.268 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:25.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:25.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:25.268 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:25.278 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:25.278 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:25.278 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:25.278 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:17:25.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28876 150\n [Camera]
17-03-17 20:17:25.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:25.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:25.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:25.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:25.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:25.898 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:25.898 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:25.898 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:25.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:17:25.908 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:25.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:17:26.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28876 797
17-03-17 20:17:26.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:26.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:17:26.268 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:17:26.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:26.278 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:26.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:17:26.278 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:17:26.278 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:26.278 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:26.278 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:17:26.288 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:17:26.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:26.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:26.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:26.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:26.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:26.438 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:26.438 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:26.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:17:26.438 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:26.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) start.
17-03-17 20:17:26.618 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:26.618 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:26.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28876 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:17:26.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:26.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131379421107106. ------
17-03-17 20:17:26.738 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:26.738 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13772 mm
17-03-17 20:17:26.738 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:26.748 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:26.748 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:17:26.748 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:26.748 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:17:26.748 -07 000000433 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:17:26.748 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30085, sync = True, waitForSettling = False)
17-03-17 20:17:26.748 -07 000000512 INF: Z Motor: Moving to -0.137720 mm, started at -0.131379 mm, distance = -6.34 um
17-03-17 20:17:26.758 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:26.758 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:17:26.768 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:17:26.768 -07 000000433 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:26.768 -07 000000433 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:26.768 -07 000000433 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:17:26.768 -07 000000512 INF: FPGA: Xmit ZDACW 30085\n [Z Motor]
17-03-17 20:17:26.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:26.768 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:17:26.778 -07 000000512 INF: FPGA: 'ZDACW 30085' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:17:26.778 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:26.778 -07 000000382 INF: FPGA: Recv ZDACR 30085
17-03-17 20:17:26.788 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:26.788 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:26.788 -07 000000512 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:17:26.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:17:26.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:17:26.828 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:17:26.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:26.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:17:26.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:26.838 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:26.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:26.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:17:26.838 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:17:26.948 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:26.948 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:17:27.158 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:17:27.158 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:27.198 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:27.198 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:17:27.208 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:27.208 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:27.208 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:17:27.208 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 20:17:28.158 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:28.158 -07 000000458 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:17:28.168 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:28.168 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:28.188 -07 000000433 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:28.188 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:28.188 -07 000000433 INF: Y Motor: Moved to 66.5391 after 1441 ms (table move)
17-03-17 20:17:28.188 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137720 mm (DAC = 30085)
17-03-17 20:17:28.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30730
17-03-17 20:17:28.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:17:28.198 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.198 -07 000000415 INF: FPGA: Recv ZSGSRD 30732
17-03-17 20:17:28.208 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30720
17-03-17 20:17:28.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30729
17-03-17 20:17:28.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:28.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.228 -07 000000547 INF: FPGA: Recv ZSGSRD 30734
17-03-17 20:17:28.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30727
17-03-17 20:17:28.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.248 -07 000000433 INF: FPGA: Recv ZSGSRD 30725
17-03-17 20:17:28.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.258 -07 000000502 INF: FPGA: Recv ZSGSRD 30722
17-03-17 20:17:28.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.268 -07 000000569 INF: FPGA: Recv ZSGSRD 30725
17-03-17 20:17:28.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:28.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30729
17-03-17 20:17:28.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.288 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:28.288 -07 000000478 INF: FPGA: Recv ZPIEZORD 26659
17-03-17 20:17:28.298 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.0 V.
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30727 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30728 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30720 (-136.9 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30727, posNoise = 7, negNoise = 7
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: After move to -0.137720, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 20:17:28.298 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:28.348 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 20:17:28.348 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:28.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:28.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:28.348 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:28.348 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:28.348 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:28.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:28.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:17:28.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:28.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:28.358 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:28.368 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:17:28.368 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:17:28.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:28.418 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 20:17:28.618 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 20:17:28.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 20:17:28.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:28.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:28.648 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:28.658 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:28.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:17:28.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:17:28.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:28.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:28.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:17:28.758 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:28.758 -07 000000478 INF: Autofocus start
17-03-17 20:17:28.758 -07 000000478 INF: MeasureProfile start
17-03-17 20:17:28.758 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:28.768 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:28.768 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:28.768 -07 000000478 INF: MeasureProfile done
17-03-17 20:17:28.768 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:17:28.768 -07 000000478 INF: Autofocus finished
17-03-17 20:17:28.968 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:28.968 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:28.968 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137720118491024. ----------
17-03-17 20:17:28.968 -07 000000610 INF: Cycle	36	Tile	9	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:28.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-17 20:17:28.978 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.137720 mm, distance = 6.76 um
17-03-17 20:17:28.978 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-17 20:17:28.978 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:17:28.988 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:28.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:28.988 -07 000000415 INF: FPGA: Recv ZDACR 28609
17-03-17 20:17:28.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:28.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29674
17-03-17 20:17:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.158 -07 000000569 INF: FPGA: Recv ZSGSRD 29678
17-03-17 20:17:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.168 -07 000000433 INF: FPGA: Recv ZSGSRD 29676
17-03-17 20:17:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.178 -07 000000458 INF: FPGA: Recv ZSGSRD 29676
17-03-17 20:17:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29671
17-03-17 20:17:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.198 -07 000000569 INF: FPGA: Recv ZSGSRD 29671
17-03-17 20:17:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29678
17-03-17 20:17:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29677
17-03-17 20:17:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.228 -07 000000382 INF: FPGA: Recv ZSGSRD 29676
17-03-17 20:17:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:29.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29681
17-03-17 20:17:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:29.248 -07 000000618 INF: FPGA: Recv ZPIEZORD 25361
17-03-17 20:17:29.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:29.258 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.5 V.
17-03-17 20:17:29.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29671 (-130.2 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:29.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 5, negNoise = 5
17-03-17 20:17:29.258 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:29.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:17:29.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:29.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:29.258 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:29.258 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:29.258 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:29.258 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:29.258 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:29.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:29.258 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:29.258 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:29.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:17:29.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:29.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:29.268 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:29.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:29.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:29.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:29.278 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:17:29.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:29.278 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:29.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28786 150\n [Camera]
17-03-17 20:17:29.328 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.047997,
17-03-17 20:17:29.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:29.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:29.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:29.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:29.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:29.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:29.898 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:29.898 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:29.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:17:29.898 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:29.898 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:17:30.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 797
17-03-17 20:17:30.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:30.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:17:30.268 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:17:30.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:30.278 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:17:30.278 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:17:30.278 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:30.278 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:30.278 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:17:30.278 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:30.288 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:17:30.428 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:30.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:30.428 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:30.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:30.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:30.438 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:30.438 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:30.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:17:30.438 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:30.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:17:30.618 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:30.618 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:30.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28786 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:17:30.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:30.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130968271530033. ------
17-03-17 20:17:30.628 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:30.628 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13782 mm
17-03-17 20:17:30.628 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:30.628 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:30.638 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:30.638 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:17:30.638 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:30.638 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:17:30.638 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30108, sync = True, waitForSettling = False)
17-03-17 20:17:30.638 -07 000000415 INF: Z Motor: Moving to -0.137826 mm, started at -0.130968 mm, distance = -6.86 um
17-03-17 20:17:30.648 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:30.648 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:17:30.658 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:17:30.658 -07 000000626 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:30.658 -07 000000415 INF: FPGA: Xmit ZDACW 30108\n [Z Motor]
17-03-17 20:17:30.658 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:17:30.658 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:30.658 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:17:30.668 -07 000000415 INF: FPGA: 'ZDACW 30108' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:17:30.668 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:30.678 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:30.678 -07 000000458 INF: FPGA: Recv ZDACR 30108
17-03-17 20:17:30.688 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:30.688 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:17:30.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:17:30.828 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:17:30.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:30.828 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:17:30.828 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:17:30.828 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:30.828 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:30.828 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:30.828 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:17:30.838 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:17:30.838 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:30.838 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:31.038 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:17:31.038 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:17:31.078 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:31.078 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:17:31.088 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:31.088 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:31.088 -07 000000626 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:17:31.088 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 20:17:31.768 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:32.038 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:32.038 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:17:32.048 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:32.048 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:32.068 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:32.068 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:32.068 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1432 ms (table move)
17-03-17 20:17:32.068 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137826 mm (DAC = 30108)
17-03-17 20:17:32.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30751
17-03-17 20:17:32.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:32.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.078 -07 000000569 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:17:32.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.088 -07 000000458 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:17:32.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.098 -07 000000512 INF: FPGA: Recv ZSGSRD 30747
17-03-17 20:17:32.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30749
17-03-17 20:17:32.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.118 -07 000000415 INF: FPGA: Recv ZSGSRD 30750
17-03-17 20:17:32.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.128 -07 000000626 INF: FPGA: Recv ZSGSRD 30740
17-03-17 20:17:32.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.138 -07 000000569 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:17:32.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.148 -07 000000458 INF: FPGA: Recv ZSGSRD 30737
17-03-17 20:17:32.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:32.158 -07 000000569 INF: FPGA: Recv ZSGSRD 30746
17-03-17 20:17:32.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.168 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:32.168 -07 000000547 INF: FPGA: Recv ZPIEZORD 26733
17-03-17 20:17:32.178 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -8.8 V.
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30745 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30746 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30737 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30745, posNoise = 6, negNoise = 8
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: After move to -0.137826, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:17:32.178 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:32.228 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:17:32.228 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:32.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:32.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:32.228 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:32.228 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:32.228 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:32.228 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:32.228 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:32.228 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:32.238 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:32.238 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:32.248 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:17:32.248 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:17:32.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:32.298 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:32.498 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:32.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:32.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:32.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:17:32.538 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:32.538 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:32.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:17:32.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:17:32.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:32.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:17:32.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:17:32.638 -07 000000626 INF: Autofocus start
17-03-17 20:17:32.638 -07 000000626 INF: MeasureProfile start
17-03-17 20:17:32.638 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:32.638 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:32.648 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:32.648 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:32.648 -07 000000626 INF: MeasureProfile done
17-03-17 20:17:32.648 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:17:32.648 -07 000000626 INF: Autofocus finished
17-03-17 20:17:32.848 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:32.848 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:32.848 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137835754309576. ----------
17-03-17 20:17:32.848 -07 000000610 INF: Cycle	36	Tile	10	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:32.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28602, sync = True, waitForSettling = True)
17-03-17 20:17:32.858 -07 000000610 INF: Z Motor: Moving to -0.130932 mm, started at -0.137836 mm, distance = 6.90 um
17-03-17 20:17:32.858 -07 000000610 INF: FPGA: Xmit ZDACW 28602\n [Z Motor]
17-03-17 20:17:32.858 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:17:32.868 -07 000000610 INF: FPGA: 'ZDACW 28602' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:32.868 -07 000000569 INF: FPGA: Recv ZDACR 28602
17-03-17 20:17:32.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:32.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29674
17-03-17 20:17:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.038 -07 000000626 INF: FPGA: Recv ZSGSRD 29667
17-03-17 20:17:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29675
17-03-17 20:17:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.058 -07 000000458 INF: FPGA: Recv ZSGSRD 29670
17-03-17 20:17:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29671
17-03-17 20:17:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29674
17-03-17 20:17:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29668
17-03-17 20:17:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29677
17-03-17 20:17:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.108 -07 000000433 INF: FPGA: Recv ZSGSRD 29669
17-03-17 20:17:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:33.118 -07 000000458 INF: FPGA: Recv ZSGSRD 29671
17-03-17 20:17:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:33.128 -07 000000433 INF: FPGA: Recv ZPIEZORD 25330
17-03-17 20:17:33.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:33.138 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.5 V.
17-03-17 20:17:33.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29672 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29671 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29667 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:33.138 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29672, posNoise = 5, negNoise = 5
17-03-17 20:17:33.138 -07 000000610 INF: Z Motor: After move to -0.130932, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:33.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:17:33.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:33.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:33.138 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:33.138 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:33.138 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:33.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:33.138 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:33.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:33.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:33.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:33.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:33.138 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:33.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:33.138 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:33.138 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:33.138 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:33.148 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:33.148 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:17:33.148 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:33.148 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:33.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28779 150\n [Camera]
17-03-17 20:17:33.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:33.768 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:33.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:33.768 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:33.768 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:33.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) start.
17-03-17 20:17:33.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:33.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:33.768 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:33.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:33.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) start.
17-03-17 20:17:33.958 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28779 797
17-03-17 20:17:34.108 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:34.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:17:34.148 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:17:34.148 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:34.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:17:34.148 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:17:34.148 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:34.158 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:34.158 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:17:34.158 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:34.168 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:17:34.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146
17-03-17 20:17:34.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146
17-03-17 20:17:34.308 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:34.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:34.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:17:34.318 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146
17-03-17 20:17:34.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146
17-03-17 20:17:34.318 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:34.318 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:34.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:17:34.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:34.498 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:34.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28779 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-17 20:17:34.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:34.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130942574681466. ------
17-03-17 20:17:34.628 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13735 mm
17-03-17 20:17:34.628 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:34.628 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:34.638 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:17:34.638 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:17:34.638 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30005, sync = True, waitForSettling = False)
17-03-17 20:17:34.638 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:34.638 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:34.638 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:17:34.638 -07 000000626 INF: Z Motor: Moving to -0.137354 mm, started at -0.130943 mm, distance = -6.41 um
17-03-17 20:17:34.638 -07 000000415 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:17:34.648 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:34.648 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:34.648 -07 000000626 INF: FPGA: Xmit ZDACW 30005\n [Z Motor]
17-03-17 20:17:34.648 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:17:34.648 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:34.648 -07 000000569 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:17:34.658 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:34.658 -07 000000626 INF: FPGA: 'ZDACW 30005' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:17:34.668 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:34.678 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:34.678 -07 000000627 INF: FPGA: Recv ZDACR 30005
17-03-17 20:17:34.688 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:34.688 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:17:34.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.037119,
17-03-17 20:17:34.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:17:34.708 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:17:34.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:17:34.708 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:17:34.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:34.708 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:34.708 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:34.718 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:17:34.718 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:17:34.718 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:17:34.858 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:34.858 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:17:35.038 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:17:35.038 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:17:35.078 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:35.078 -07 000000618 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:17:35.088 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:35.088 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:35.088 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:17:35.088 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 20:17:36.038 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:36.038 -07 000000618 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:17:36.048 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:36.048 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:36.068 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:36.068 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:36.068 -07 000000569 INF: Y Motor: Moved to 68.2056 after 1428 ms (table move)
17-03-17 20:17:36.068 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137354 mm (DAC = 30005)
17-03-17 20:17:36.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.068 -07 000000569 INF: FPGA: Recv ZSGSRD 30678
17-03-17 20:17:36.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:36.078 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.078 -07 000000512 INF: FPGA: Recv ZSGSRD 30670
17-03-17 20:17:36.088 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.088 -07 000000626 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:17:36.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.098 -07 000000512 INF: FPGA: Recv ZSGSRD 30678
17-03-17 20:17:36.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.108 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30665
17-03-17 20:17:36.118 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.118 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.118 -07 000000512 INF: FPGA: Recv ZSGSRD 30673
17-03-17 20:17:36.128 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.128 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.128 -07 000000626 INF: FPGA: Recv ZSGSRD 30665
17-03-17 20:17:36.138 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.138 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30665
17-03-17 20:17:36.148 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.148 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.148 -07 000000626 INF: FPGA: Recv ZSGSRD 30671
17-03-17 20:17:36.158 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.158 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:36.158 -07 000000569 INF: FPGA: Recv ZSGSRD 30674
17-03-17 20:17:36.168 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.168 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:36.168 -07 000000618 INF: FPGA: Recv ZPIEZORD 26661
17-03-17 20:17:36.178 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -8.8 V.
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30672 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30665 (-136.5 uncal um), Max = 30678 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30672, posNoise = 6, negNoise = 7
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: After move to -0.137354, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: Settle wait time = 1430 ms, measure time = 107 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:17:36.178 -07 000000458 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:36.228 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:17:36.228 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:36.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:36.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:36.228 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:36.228 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:36.228 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:36.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:36.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:36.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:36.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:36.238 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:36.238 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:17:36.238 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:17:36.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:36.288 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:36.488 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:36.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:36.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:36.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:36.528 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:36.528 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:36.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:17:36.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:17:36.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:36.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:17:36.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:17:36.628 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:36.628 -07 000000547 INF: Autofocus start
17-03-17 20:17:36.628 -07 000000547 INF: MeasureProfile start
17-03-17 20:17:36.628 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:36.638 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:36.638 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:36.638 -07 000000547 INF: MeasureProfile done
17-03-17 20:17:36.638 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:17:36.638 -07 000000547 INF: Autofocus finished
17-03-17 20:17:36.768 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:36.838 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:36.838 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:36.838 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137366786823227. ----------
17-03-17 20:17:36.838 -07 000000610 INF: Cycle	36	Tile	11	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:36.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28529, sync = True, waitForSettling = True)
17-03-17 20:17:36.848 -07 000000610 INF: Z Motor: Moving to -0.130597 mm, started at -0.137367 mm, distance = 6.77 um
17-03-17 20:17:36.848 -07 000000610 INF: FPGA: Xmit ZDACW 28529\n [Z Motor]
17-03-17 20:17:36.848 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:17:36.858 -07 000000610 INF: FPGA: 'ZDACW 28529' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:36.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:36.858 -07 000000458 INF: FPGA: Recv ZDACR 28529
17-03-17 20:17:36.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:36.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:17:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.028 -07 000000618 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:17:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.038 -07 000000569 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:17:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29625
17-03-17 20:17:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.058 -07 000000618 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:17:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29615
17-03-17 20:17:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:17:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:17:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29615
17-03-17 20:17:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:37.108 -07 000000512 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:17:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:37.118 -07 000000626 INF: FPGA: Recv ZPIEZORD 25285
17-03-17 20:17:37.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:37.128 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.5 V.
17-03-17 20:17:37.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29618 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29618 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29613 (-129.8 uncal um), Max = 29625 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:37.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29618, posNoise = 7, negNoise = 5
17-03-17 20:17:37.128 -07 000000610 INF: Z Motor: After move to -0.130597, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:37.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:17:37.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:37.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:37.128 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:37.128 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:37.128 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:37.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:37.128 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:37.128 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:37.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:37.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:37.138 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:37.138 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:37.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:37.138 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:37.138 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:37.138 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:37.148 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:17:37.148 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:17:37.148 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:17:37.148 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:17:37.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28706 150\n [Camera]
17-03-17 20:17:37.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:37.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:37.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:37.768 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:37.768 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:37.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:37.768 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:37.778 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:37.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:17:37.778 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:37.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:17:37.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28706 797
17-03-17 20:17:38.108 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:38.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:17:38.168 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:17:38.168 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:38.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:17:38.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:17:38.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:38.168 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:38.168 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:17:38.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:17:38.178 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:17:38.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:38.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:38.308 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:38.308 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:38.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:17:38.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:38.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:38.308 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:38.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:38.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) start.
17-03-17 20:17:38.498 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:38.498 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:38.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28706 150' command took 2 ms to send, 1334 ms to get response, and 1344 ms overall
17-03-17 20:17:38.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:38.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130595667225811. ------
17-03-17 20:17:38.498 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:38.498 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13730 mm
17-03-17 20:17:38.498 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:38.618 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:38.618 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 114 ms to get response, and 115 ms overall
17-03-17 20:17:38.618 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29994, sync = True, waitForSettling = False)
17-03-17 20:17:38.618 -07 000000569 INF: Z Motor: Moving to -0.137304 mm, started at -0.130596 mm, distance = -6.71 um
17-03-17 20:17:38.618 -07 000000569 INF: FPGA: Xmit ZDACW 29994\n [Z Motor]
17-03-17 20:17:38.618 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:17:38.618 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:17:38.618 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:17:38.628 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:38.628 -07 000000569 INF: FPGA: 'ZDACW 29994' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:38.638 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:38.638 -07 000000433 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:17:38.648 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:17:38.648 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:38.648 -07 000000618 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:38.648 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:38.648 -07 000000618 INF: Y Motor: Moving 1339 steps-14
17-03-17 20:17:38.648 -07 000000448 INF: FPGA: Recv ZDACR 29994
17-03-17 20:17:38.658 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:38.658 -07 000000569 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:17:38.658 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:38.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:17:38.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:17:38.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:38.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:17:38.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:17:38.708 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:38.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:38.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:17:38.708 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:38.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:17:38.828 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:38.828 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall
17-03-17 20:17:39.028 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:17:39.028 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:17:39.068 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:39.068 -07 000000478 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:17:39.078 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:39.078 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:39.078 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:17:39.078 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 20:17:40.028 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:40.028 -07 000000478 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:17:40.038 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:40.038 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:40.058 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:40.058 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:40.058 -07 000000618 INF: Y Motor: Moved to 69.0273 after 1437 ms (table move)
17-03-17 20:17:40.058 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137304 mm (DAC = 29994)
17-03-17 20:17:40.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.068 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.014009,
17-03-17 20:17:40.068 -07 000000478 INF: FPGA: Recv ZSGSRD 30666
17-03-17 20:17:40.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:17:40.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:17:40.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:40.108 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.108 -07 000000512 INF: FPGA: Recv ZSGSRD 30663
17-03-17 20:17:40.118 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.128 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30659
17-03-17 20:17:40.138 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:40.138 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30661
17-03-17 20:17:40.148 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:40.158 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.158 -07 000000433 INF: FPGA: Recv ZSGSRD 30664
17-03-17 20:17:40.168 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:40.168 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30668
17-03-17 20:17:40.178 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.178 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.178 -07 000000433 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:17:40.188 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.188 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:17:40.198 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.198 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:40.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30666
17-03-17 20:17:40.208 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:40.208 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:40.208 -07 000000448 INF: FPGA: Recv ZPIEZORD 26659
17-03-17 20:17:40.218 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -8.8 V.
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30665 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30659 (-136.5 uncal um), Max = 30668 (-136.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30665, posNoise = 3, negNoise = 6
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: After move to -0.137304, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: Settle wait time = 1442 ms, measure time = 153 ms (allowed 150 ms), total time = 1595 ms
17-03-17 20:17:40.218 -07 000000458 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 20:17:40.218 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 20:17:40.218 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:40.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:40.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:40.218 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:40.218 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:40.218 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:40.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:40.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:40.218 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:40.228 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:40.228 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:40.238 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:17:40.238 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:17:40.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:40.288 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:40.488 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:40.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:40.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:40.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:40.528 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:40.528 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:40.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:17:40.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:17:40.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:40.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:17:40.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:17:40.628 -07 000000433 INF: Autofocus start
17-03-17 20:17:40.628 -07 000000433 INF: MeasureProfile start
17-03-17 20:17:40.628 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:40.628 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:40.638 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:40.638 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:40.638 -07 000000433 INF: MeasureProfile done
17-03-17 20:17:40.648 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:17:40.648 -07 000000433 INF: Autofocus finished
17-03-17 20:17:40.838 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:40.838 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:17:40.838 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137321817338235. ----------
17-03-17 20:17:40.848 -07 000000610 INF: Cycle	36	Tile	12	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:40.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28501, sync = True, waitForSettling = True)
17-03-17 20:17:40.848 -07 000000610 INF: Z Motor: Moving to -0.130469 mm, started at -0.137322 mm, distance = 6.85 um
17-03-17 20:17:40.848 -07 000000610 INF: FPGA: Xmit ZDACW 28501\n [Z Motor]
17-03-17 20:17:40.848 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:17:40.858 -07 000000610 INF: FPGA: 'ZDACW 28501' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:40.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:40.858 -07 000000547 INF: FPGA: Recv ZDACR 28501
17-03-17 20:17:40.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:40.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.018 -07 000000458 INF: FPGA: Recv ZSGSRD 29597
17-03-17 20:17:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29599
17-03-17 20:17:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.038 -07 000000458 INF: FPGA: Recv ZSGSRD 29600
17-03-17 20:17:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29597
17-03-17 20:17:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.058 -07 000000502 INF: FPGA: Recv ZSGSRD 29596
17-03-17 20:17:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.068 -07 000000433 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:17:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29603
17-03-17 20:17:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29599
17-03-17 20:17:41.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.098 -07 000000502 INF: FPGA: Recv ZSGSRD 29600
17-03-17 20:17:41.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:41.108 -07 000000547 INF: FPGA: Recv ZSGSRD 29597
17-03-17 20:17:41.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:41.118 -07 000000458 INF: FPGA: Recv ZPIEZORD 25267
17-03-17 20:17:41.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:41.128 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.5 V.
17-03-17 20:17:41.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29599 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29599 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29596 (-129.7 uncal um), Max = 29604 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:17:41.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29599, posNoise = 5, negNoise = 3
17-03-17 20:17:41.128 -07 000000610 INF: Z Motor: After move to -0.130469, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:41.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:17:41.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:41.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:41.128 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:41.128 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:41.128 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:41.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:41.128 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:41.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:41.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:41.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:41.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:41.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:41.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:41.138 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:41.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:17:41.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:41.148 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:17:41.148 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:17:41.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:17:41.148 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:17:41.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28678 150\n [Camera]
17-03-17 20:17:41.348 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:41.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:41.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:41.768 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:41.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:41.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:41.768 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:41.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:41.768 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:41.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:17:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:41.778 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:41.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:17:41.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28678 797
17-03-17 20:17:42.108 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:42.138 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:17:42.138 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:17:42.138 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:42.148 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:42.148 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:17:42.148 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:17:42.148 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:17:42.148 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:42.148 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:42.158 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:17:42.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:42.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:42.308 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:42.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:42.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:42.308 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:42.308 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:42.308 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:17:42.308 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:42.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:17:42.498 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:17:42.498 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:42.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28678 150' command took 2 ms to send, 1342 ms to get response, and 1344 ms overall
17-03-17 20:17:42.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:42.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130473607195118. ------
17-03-17 20:17:42.498 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:42.498 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13693 mm
17-03-17 20:17:42.498 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:42.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:17:42.508 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:17:42.508 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:42.508 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29913, sync = True, waitForSettling = False)
17-03-17 20:17:42.508 -07 000000433 INF: Z Motor: Moving to -0.136933 mm, started at -0.130474 mm, distance = -6.46 um
17-03-17 20:17:42.508 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:42.508 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:17:42.508 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:17:42.518 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:42.518 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:42.518 -07 000000502 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:42.518 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:42.518 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:17:42.528 -07 000000433 INF: FPGA: Xmit ZDACW 29913\n [Z Motor]
17-03-17 20:17:42.528 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:17:42.538 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:42.538 -07 000000433 INF: FPGA: 'ZDACW 29913' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:17:42.548 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:42.548 -07 000000626 INF: FPGA: Recv ZDACR 29913
17-03-17 20:17:42.558 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:17:42.558 -07 000000433 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:17:42.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:17:42.698 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:17:42.698 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:17:42.698 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:42.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:17:42.698 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:42.708 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:42.708 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:17:42.708 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:42.708 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:17:42.718 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:42.718 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 20:17:42.908 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:17:42.908 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:17:42.948 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:42.948 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:17:42.958 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:42.958 -07 000000502 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:42.958 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:17:42.958 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 20:17:43.908 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:43.908 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:17:43.918 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:43.918 -07 000000502 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:43.938 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:43.938 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:17:43.938 -07 000000502 INF: Y Motor: Moved to 69.8638 after 1432 ms (table move)
17-03-17 20:17:43.938 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136933 mm (DAC = 29913)
17-03-17 20:17:43.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.948 -07 000000382 INF: FPGA: Recv ZSGSRD 30605
17-03-17 20:17:43.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:17:43.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.948 -07 000000382 INF: FPGA: Recv ZSGSRD 30610
17-03-17 20:17:43.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:43.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30614
17-03-17 20:17:43.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:43.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.968 -07 000000382 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:17:43.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:43.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30605
17-03-17 20:17:43.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:43.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.988 -07 000000382 INF: FPGA: Recv ZSGSRD 30601
17-03-17 20:17:43.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:43.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:43.998 -07 000000627 INF: FPGA: Recv ZSGSRD 30602
17-03-17 20:17:44.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.008 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.008 -07 000000627 INF: FPGA: Recv ZSGSRD 30605
17-03-17 20:17:44.018 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30601
17-03-17 20:17:44.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30606
17-03-17 20:17:44.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.038 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:44.038 -07 000000627 INF: FPGA: Recv ZPIEZORD 26625
17-03-17 20:17:44.048 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -8.8 V.
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30606 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30605 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30601 (-136.1 uncal um), Max = 30614 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30606, posNoise = 8, negNoise = 5
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: After move to -0.136933, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:17:44.048 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:44.098 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:17:44.098 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:44.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:44.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:44.098 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:44.098 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:44.098 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:44.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:44.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:44.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:44.108 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:44.108 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:44.108 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:17:44.108 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:17:44.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:44.158 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:44.358 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:44.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:44.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:44.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:17:44.398 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:44.398 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:44.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:17:44.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:17:44.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:44.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:44.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:17:44.498 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:44.498 -07 000000478 INF: Autofocus start
17-03-17 20:17:44.498 -07 000000478 INF: MeasureProfile start
17-03-17 20:17:44.498 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:44.508 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:44.508 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:44.508 -07 000000478 INF: MeasureProfile done
17-03-17 20:17:44.508 -07 000000478 INF: X=17  Z correction [um]=0.05782829
17-03-17 20:17:44.508 -07 000000478 INF: Autofocus finished
17-03-17 20:17:44.708 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:44.708 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:44.708 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136942788821871. ----------
17-03-17 20:17:44.708 -07 000000610 INF: Cycle	36	Tile	13	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:44.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28438, sync = True, waitForSettling = True)
17-03-17 20:17:44.718 -07 000000610 INF: Z Motor: Moving to -0.130181 mm, started at -0.136943 mm, distance = 6.76 um
17-03-17 20:17:44.718 -07 000000610 INF: FPGA: Xmit ZDACW 28438\n [Z Motor]
17-03-17 20:17:44.718 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:17:44.728 -07 000000610 INF: FPGA: 'ZDACW 28438' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:44.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:44.728 -07 000000478 INF: FPGA: Recv ZDACR 28438
17-03-17 20:17:44.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29556
17-03-17 20:17:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.898 -07 000000569 INF: FPGA: Recv ZSGSRD 29555
17-03-17 20:17:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.908 -07 000000502 INF: FPGA: Recv ZSGSRD 29550
17-03-17 20:17:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29551
17-03-17 20:17:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.928 -07 000000569 INF: FPGA: Recv ZSGSRD 29555
17-03-17 20:17:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29552
17-03-17 20:17:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.948 -07 000000569 INF: FPGA: Recv ZSGSRD 29554
17-03-17 20:17:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.958 -07 000000502 INF: FPGA: Recv ZSGSRD 29553
17-03-17 20:17:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29555
17-03-17 20:17:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:44.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29552
17-03-17 20:17:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:44.988 -07 000000448 INF: FPGA: Recv ZPIEZORD 25244
17-03-17 20:17:44.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:44.998 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.5 V.
17-03-17 20:17:44.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29553 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29550 (-129.4 uncal um), Max = 29556 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:17:44.998 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29553, posNoise = 3, negNoise = 3
17-03-17 20:17:44.998 -07 000000610 INF: Z Motor: After move to -0.130181, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:44.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:17:44.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:44.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:44.998 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:44.998 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:44.998 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:44.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:44.998 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:44.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:44.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:44.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:45.008 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:45.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:45.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:45.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:45.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:45.008 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:45.018 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:17:45.018 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:17:45.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:45.018 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:17:45.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28615 150\n [Camera]
17-03-17 20:17:45.218 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:17:45.478 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.988112,
17-03-17 20:17:45.628 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:45.628 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:45.628 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:45.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) start.
17-03-17 20:17:45.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:45.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:45.638 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:45.638 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:45.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) start.
17-03-17 20:17:45.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28615 797
17-03-17 20:17:45.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:46.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:17:46.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:17:46.028 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:46.028 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:17:46.028 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:17:46.028 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:46.028 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:46.028 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:17:46.028 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:46.038 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:17:46.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:46.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:46.168 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:46.168 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:46.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:17:46.178 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:46.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:46.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:46.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:46.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:17:46.358 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:46.358 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:46.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28615 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:17:46.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:46.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130178093436597. ------
17-03-17 20:17:46.368 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:46.368 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13650 mm
17-03-17 20:17:46.368 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:46.488 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:46.488 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 20:17:46.488 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:46.488 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:17:46.488 -07 000000448 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:17:46.488 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29818, sync = True, waitForSettling = False)
17-03-17 20:17:46.488 -07 000000382 INF: Z Motor: Moving to -0.136498 mm, started at -0.130178 mm, distance = -6.32 um
17-03-17 20:17:46.498 -07 000000382 INF: FPGA: Xmit ZDACW 29818\n [Z Motor]
17-03-17 20:17:46.498 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:17:46.508 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:46.508 -07 000000382 INF: FPGA: 'ZDACW 29818' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:17:46.508 -07 000000012 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:17:46.518 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:17:46.518 -07 000000448 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:46.518 -07 000000448 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:46.518 -07 000000448 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:17:46.518 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:46.518 -07 000000012 INF: FPGA: Recv ZDACR 29818
17-03-17 20:17:46.528 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:46.528 -07 000000382 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 20:17:46.528 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:46.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:17:46.568 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:17:46.568 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:46.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:17:46.578 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:17:46.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:46.578 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:46.578 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:17:46.578 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:17:46.578 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:17:46.688 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:46.688 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 20:17:46.768 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:46.898 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:17:46.898 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:17:46.938 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:46.938 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:17:46.948 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:46.948 -07 000000448 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:46.948 -07 000000448 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:17:46.948 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 20:17:47.898 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:47.898 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:17:47.908 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:47.908 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:47.928 -07 000000448 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:47.928 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:17:47.928 -07 000000448 INF: Y Motor: Moved to 70.6890 after 1435 ms (table move)
17-03-17 20:17:47.928 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136498 mm (DAC = 29818)
17-03-17 20:17:47.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:17:47.938 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:47.938 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30528
17-03-17 20:17:47.948 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.948 -07 000000433 INF: FPGA: Recv ZSGSRD 30534
17-03-17 20:17:47.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.958 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.958 -07 000000512 INF: FPGA: Recv ZSGSRD 30537
17-03-17 20:17:47.968 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.968 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.968 -07 000000512 INF: FPGA: Recv ZSGSRD 30544
17-03-17 20:17:47.978 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.978 -07 000000547 INF: FPGA: Recv ZSGSRD 30541
17-03-17 20:17:47.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30537
17-03-17 20:17:47.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:47.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:47.998 -07 000000502 INF: FPGA: Recv ZSGSRD 30531
17-03-17 20:17:48.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:48.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:48.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:17:48.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:48.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:48.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30538
17-03-17 20:17:48.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 750 ms to get response, and 760 ms overall
17-03-17 20:17:48.778 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:48.778 -07 000000448 INF: FPGA: Recv ZPIEZORD 26556
17-03-17 20:17:48.788 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -8.8 V.
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30535 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30536 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30528 (-135.6 uncal um), Max = 30544 (-135.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30535, posNoise = 9, negNoise = 7
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: After move to -0.136498, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: Settle wait time = 1438 ms, measure time = 854 ms (allowed 150 ms), total time = 2292 ms
17-03-17 20:17:48.788 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 854 ms, longer than max expected time of 150 ms
17-03-17 20:17:48.788 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2416 ms
17-03-17 20:17:48.788 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:48.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:48.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:48.788 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:48.788 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:48.788 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:48.788 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:48.788 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:48.788 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:48.798 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:48.798 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:48.798 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:17:48.798 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:17:48.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:48.848 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:49.048 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:49.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:49.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:49.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:49.088 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:49.088 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:49.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:17:49.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:17:49.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:49.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:49.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:17:49.188 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:49.188 -07 000000501 INF: Autofocus start
17-03-17 20:17:49.188 -07 000000501 INF: MeasureProfile start
17-03-17 20:17:49.188 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:49.198 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:17:49.198 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:49.198 -07 000000501 INF: MeasureProfile done
17-03-17 20:17:49.198 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:17:49.198 -07 000000501 INF: Autofocus finished
17-03-17 20:17:49.398 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:49.398 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:49.398 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136486669759806. ----------
17-03-17 20:17:49.398 -07 000000610 INF: Cycle	36	Tile	14	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:49.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28359, sync = True, waitForSettling = True)
17-03-17 20:17:49.408 -07 000000610 INF: Z Motor: Moving to -0.129819 mm, started at -0.136487 mm, distance = 6.67 um
17-03-17 20:17:49.408 -07 000000610 INF: FPGA: Xmit ZDACW 28359\n [Z Motor]
17-03-17 20:17:49.408 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:17:49.418 -07 000000610 INF: FPGA: 'ZDACW 28359' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:49.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:49.418 -07 000000382 INF: FPGA: Recv ZDACR 28359
17-03-17 20:17:49.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:49.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.578 -07 000000478 INF: FPGA: Recv ZSGSRD 29493
17-03-17 20:17:49.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:49.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:17:49.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:17:49.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.608 -07 000000512 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:17:49.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29504
17-03-17 20:17:49.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.628 -07 000000448 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:17:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.638 -07 000000478 INF: FPGA: Recv ZSGSRD 29505
17-03-17 20:17:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.648 -07 000000512 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:17:49.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:17:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:49.668 -07 000000478 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:17:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:49.678 -07 000000382 INF: FPGA: Recv ZPIEZORD 25201
17-03-17 20:17:49.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:49.688 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.4 V.
17-03-17 20:17:49.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29498 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29493 (-129.0 uncal um), Max = 29505 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:49.688 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29498, posNoise = 7, negNoise = 5
17-03-17 20:17:49.688 -07 000000610 INF: Z Motor: After move to -0.129819, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:49.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:17:49.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:49.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:49.688 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:49.688 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:49.688 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:49.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:49.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:49.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:49.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:17:49.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:49.688 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 20:17:49.688 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:49.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:49.698 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:49.698 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:17:49.698 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:49.708 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:17:49.708 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:17:49.708 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:17:49.708 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:17:49.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28536 150\n [Camera]
17-03-17 20:17:49.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:50.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:17:50.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:17:50.328 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:50.328 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:17:50.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:17:50.328 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:50.328 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:50.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:17:50.328 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:50.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:17:50.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28536 797
17-03-17 20:17:50.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:50.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:17:50.718 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:17:50.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:50.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:17:50.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:17:50.718 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:50.718 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:50.718 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:50.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:17:50.728 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:17:50.838 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.993549,
17-03-17 20:17:50.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:50.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:50.868 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:50.868 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:50.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:50.868 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:50.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:17:50.868 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:50.868 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:50.868 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) start.
17-03-17 20:17:51.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:51.058 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:51.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28536 150' command took 2 ms to send, 1341 ms to get response, and 1344 ms overall
17-03-17 20:17:51.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:51.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.1298247617688. ------
17-03-17 20:17:51.058 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:51.058 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13647 mm
17-03-17 20:17:51.058 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:51.178 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:51.178 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 20:17:51.178 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:17:51.178 -07 000000012 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:17:51.178 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:51.178 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29811, sync = True, waitForSettling = False)
17-03-17 20:17:51.178 -07 000000501 INF: Z Motor: Moving to -0.136466 mm, started at -0.129825 mm, distance = -6.64 um
17-03-17 20:17:51.178 -07 000000448 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:17:51.188 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:51.188 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:51.188 -07 000000012 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:51.188 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:17:51.188 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:51.198 -07 000000501 INF: FPGA: Xmit ZDACW 29811\n [Z Motor]
17-03-17 20:17:51.198 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:17:51.208 -07 000000501 INF: FPGA: 'ZDACW 29811' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:17:51.208 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:51.218 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:51.218 -07 000000433 INF: FPGA: Recv ZDACR 29811
17-03-17 20:17:51.228 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:17:51.228 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:17:51.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:17:51.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:17:51.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:51.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:17:51.268 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:17:51.268 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:51.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:51.268 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:17:51.268 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:51.278 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:17:51.388 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:51.388 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:17:51.578 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:17:51.578 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:51.618 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:51.628 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:17:51.628 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:17:51.628 -07 000000012 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:51.628 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:17:51.628 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 20:17:51.768 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:51.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:52.578 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:52.578 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:17:52.588 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:52.588 -07 000000012 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:52.608 -07 000000012 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:52.608 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:17:52.608 -07 000000012 INF: Y Motor: Moved to 71.5195 after 1430 ms (table move)
17-03-17 20:17:52.608 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136466 mm (DAC = 29811)
17-03-17 20:17:52.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.618 -07 000000501 INF: FPGA: Recv ZSGSRD 30536
17-03-17 20:17:52.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:17:52.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.618 -07 000000433 INF: FPGA: Recv ZSGSRD 30524
17-03-17 20:17:52.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.628 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.628 -07 000000478 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:17:52.638 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.638 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.638 -07 000000012 INF: FPGA: Recv ZSGSRD 30540
17-03-17 20:17:52.648 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.648 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.648 -07 000000547 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:17:52.658 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.658 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.658 -07 000000433 INF: FPGA: Recv ZSGSRD 30540
17-03-17 20:17:52.668 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.668 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30527
17-03-17 20:17:52.678 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30525
17-03-17 20:17:52.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.688 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.688 -07 000000501 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:17:52.698 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.698 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:52.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:17:52.708 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.708 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:52.708 -07 000000012 INF: FPGA: Recv ZPIEZORD 26564
17-03-17 20:17:52.718 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -8.7 V.
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30532 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30532 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30524 (-135.6 uncal um), Max = 30540 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30532, posNoise = 8, negNoise = 8
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: After move to -0.136466, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: Settle wait time = 1433 ms, measure time = 103 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:17:52.718 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:17:52.768 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 20:17:52.768 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:52.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:52.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:52.768 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:52.768 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:52.768 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:52.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:52.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:17:52.768 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:52.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:52.778 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:52.778 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:17:52.778 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:17:52.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:52.828 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:53.028 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:53.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:53.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:53.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:17:53.068 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:53.068 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:53.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:17:53.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:17:53.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:53.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:53.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:17:53.168 -07 000000569 INF: Autofocus start
17-03-17 20:17:53.168 -07 000000569 INF: MeasureProfile start
17-03-17 20:17:53.168 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:53.168 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:53.178 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:53.178 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:53.178 -07 000000569 INF: MeasureProfile done
17-03-17 20:17:53.178 -07 000000569 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 20:17:53.178 -07 000000569 INF: Autofocus finished
17-03-17 20:17:53.378 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:53.378 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:53.378 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136467397123381. ----------
17-03-17 20:17:53.378 -07 000000610 INF: Cycle	36	Tile	15	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:53.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28272, sync = True, waitForSettling = True)
17-03-17 20:17:53.388 -07 000000610 INF: Z Motor: Moving to -0.129421 mm, started at -0.136467 mm, distance = 7.05 um
17-03-17 20:17:53.388 -07 000000610 INF: FPGA: Xmit ZDACW 28272\n [Z Motor]
17-03-17 20:17:53.388 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:17:53.398 -07 000000610 INF: FPGA: 'ZDACW 28272' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:53.398 -07 000000569 INF: FPGA: Recv ZDACR 28272
17-03-17 20:17:53.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29435
17-03-17 20:17:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29439
17-03-17 20:17:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.578 -07 000000458 INF: FPGA: Recv ZSGSRD 29434
17-03-17 20:17:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29430
17-03-17 20:17:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29434
17-03-17 20:17:53.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.608 -07 000000626 INF: FPGA: Recv ZSGSRD 29437
17-03-17 20:17:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29438
17-03-17 20:17:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.628 -07 000000448 INF: FPGA: Recv ZSGSRD 29432
17-03-17 20:17:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.638 -07 000000569 INF: FPGA: Recv ZSGSRD 29433
17-03-17 20:17:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:53.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29439
17-03-17 20:17:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:53.658 -07 000000626 INF: FPGA: Recv ZPIEZORD 25126
17-03-17 20:17:53.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:53.668 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.5 V.
17-03-17 20:17:53.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29435 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29434 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29430 (-128.6 uncal um), Max = 29439 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:53.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29435, posNoise = 4, negNoise = 5
17-03-17 20:17:53.668 -07 000000610 INF: Z Motor: After move to -0.129421, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:53.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:17:53.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:53.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:53.668 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:53.668 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:53.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:53.668 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:53.668 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:53.668 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:53.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:53.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:53.668 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:53.668 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:53.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:17:53.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:53.678 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:53.678 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:53.678 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:17:53.678 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:53.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:17:53.678 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:17:53.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28448 150\n [Camera]
17-03-17 20:17:53.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:54.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:54.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:54.298 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:54.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:54.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:54.298 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:54.298 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:54.298 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:17:54.308 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:54.308 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:17:54.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28448 797
17-03-17 20:17:54.638 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:54.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:17:54.698 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:17:54.698 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:54.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:54.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:17:54.708 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:17:54.708 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:17:54.708 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:54.708 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:54.718 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:17:54.838 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:54.838 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:54.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:54.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:54.838 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:54.838 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:54.838 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:17:54.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:54.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:17:55.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:17:55.028 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:17:55.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28448 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-17 20:17:55.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:17:55.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129420036403869. ------
17-03-17 20:17:55.038 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:55.038 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13533 mm
17-03-17 20:17:55.038 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:17:55.248 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:17:55.248 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:17:55.248 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:55.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:17:55.248 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:17:55.248 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:55.248 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:55.248 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:55.248 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:17:55.258 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:17:55.268 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:55.268 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 232 ms overall
17-03-17 20:17:55.268 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:17:55.268 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29564, sync = True, waitForSettling = False)
17-03-17 20:17:55.268 -07 000000547 INF: Z Motor: Moving to -0.135335 mm, started at -0.129420 mm, distance = -5.92 um
17-03-17 20:17:55.268 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:17:55.268 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:17:55.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:55.278 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:17:55.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:17:55.288 -07 000000547 INF: FPGA: Xmit ZDACW 29564\n [Z Motor]
17-03-17 20:17:55.288 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:55.288 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:17:55.288 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:17:55.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:17:55.298 -07 000000547 INF: FPGA: 'ZDACW 29564' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:17:55.298 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:55.298 -07 000000501 INF: FPGA: Recv ZDACR 29564
17-03-17 20:17:55.308 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:17:55.308 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:55.308 -07 000000547 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 20:17:55.468 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:17:55.468 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 20:17:55.678 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:17:55.678 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:17:55.718 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:55.718 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:17:55.728 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:55.728 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:55.728 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:17:55.728 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 20:17:56.198 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.011254,
17-03-17 20:17:56.678 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:17:56.678 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:17:56.688 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.688 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:17:56.708 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:17:56.708 -07 000000626 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:17:56.708 -07 000000626 INF: Y Motor: Moved to 72.3501 after 1436 ms (table move)
17-03-17 20:17:56.708 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135335 mm (DAC = 29564)
17-03-17 20:17:56.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.718 -07 000000547 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:17:56.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:17:56.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.718 -07 000000012 INF: FPGA: Recv ZSGSRD 30352
17-03-17 20:17:56.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:17:56.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30359
17-03-17 20:17:56.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30362
17-03-17 20:17:56.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.748 -07 000000547 INF: FPGA: Recv ZSGSRD 30358
17-03-17 20:17:56.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30359
17-03-17 20:17:56.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:56.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30353
17-03-17 20:17:56.768 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:17:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:17:56.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:56.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:57.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30357
17-03-17 20:17:57.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 950 ms to get response, and 960 ms overall
17-03-17 20:17:57.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:57.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30359
17-03-17 20:17:57.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:57.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:57.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30364
17-03-17 20:17:57.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:57.758 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:57.758 -07 000000458 INF: FPGA: Recv ZPIEZORD 26314
17-03-17 20:17:57.768 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.9 V.
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30358 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30358 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30352 (-134.5 uncal um), Max = 30364 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30358, posNoise = 6, negNoise = 6
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: After move to -0.135335, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: Settle wait time = 1440 ms, measure time = 1053 ms (allowed 150 ms), total time = 2493 ms
17-03-17 20:17:57.768 -07 000000448 INF: Z Motor: Warning: Actual position measuring time = 1053 ms, longer than max expected time of 150 ms
17-03-17 20:17:57.768 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2727 ms
17-03-17 20:17:57.768 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:17:57.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:57.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:57.768 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:17:57.768 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:57.768 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:57.768 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:57.778 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:57.778 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:17:57.778 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:17:57.778 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:17:57.788 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:17:57.788 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:17:57.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:17:57.828 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:17:58.028 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:17:58.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:17:58.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:17:58.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:17:58.068 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:17:58.068 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:17:58.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:17:58.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:17:58.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:58.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:17:58.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:17:58.168 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:17:58.168 -07 000000382 INF: Autofocus start
17-03-17 20:17:58.168 -07 000000382 INF: MeasureProfile start
17-03-17 20:17:58.168 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:17:58.178 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:17:58.178 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:17:58.178 -07 000000382 INF: MeasureProfile done
17-03-17 20:17:58.178 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:17:58.178 -07 000000382 INF: Autofocus finished
17-03-17 20:17:58.378 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:17:58.378 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:17:58.378 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135349584210714. ----------
17-03-17 20:17:58.378 -07 000000610 INF: Cycle	36	Tile	16	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:17:58.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28088, sync = True, waitForSettling = True)
17-03-17 20:17:58.388 -07 000000610 INF: Z Motor: Moving to -0.128579 mm, started at -0.135350 mm, distance = 6.77 um
17-03-17 20:17:58.388 -07 000000610 INF: FPGA: Xmit ZDACW 28088\n [Z Motor]
17-03-17 20:17:58.388 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:17:58.398 -07 000000610 INF: FPGA: 'ZDACW 28088' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:17:58.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:17:58.398 -07 000000627 INF: FPGA: Recv ZDACR 28088
17-03-17 20:17:58.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:17:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:17:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.568 -07 000000458 INF: FPGA: Recv ZSGSRD 29306
17-03-17 20:17:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29305
17-03-17 20:17:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:17:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.588 -07 000000458 INF: FPGA: Recv ZSGSRD 29302
17-03-17 20:17:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.598 -07 000000448 INF: FPGA: Recv ZSGSRD 29304
17-03-17 20:17:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:17:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29308
17-03-17 20:17:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29303
17-03-17 20:17:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.638 -07 000000547 INF: FPGA: Recv ZSGSRD 29299
17-03-17 20:17:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:17:58.648 -07 000000627 INF: FPGA: Recv ZSGSRD 29306
17-03-17 20:17:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:17:58.658 -07 000000458 INF: FPGA: Recv ZPIEZORD 24944
17-03-17 20:17:58.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:17:58.668 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.6 V.
17-03-17 20:17:58.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29304 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29299 (-127.8 uncal um), Max = 29308 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:17:58.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29304, posNoise = 4, negNoise = 5
17-03-17 20:17:58.668 -07 000000610 INF: Z Motor: After move to -0.128579, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:17:58.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:17:58.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:17:58.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:17:58.668 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:17:58.668 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:17:58.668 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:17:58.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:17:58.668 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:17:58.668 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:17:58.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:17:58.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:17:58.668 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:17:58.668 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:17:58.678 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:17:58.678 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:17:58.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:17:58.678 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:17:58.688 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:17:58.688 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:17:58.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:17:58.688 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:17:58.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28265 150\n [Camera]
17-03-17 20:17:58.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:17:59.308 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:17:59.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:17:59.308 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:59.308 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:59.308 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) start.
17-03-17 20:17:59.308 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:17:59.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:17:59.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:59.308 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:59.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) start.
17-03-17 20:17:59.498 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28265 797
17-03-17 20:17:59.648 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:17:59.708 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:17:59.708 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:17:59.708 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:59.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:17:59.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:17:59.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:17:59.708 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:17:59.708 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:17:59.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:17:59.718 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:17:59.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:17:59.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:17:59.848 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:17:59.848 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:17:59.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:17:59.848 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:17:59.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:17:59.848 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:17:59.848 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:17:59.848 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:18:00.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:18:00.038 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:18:00.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28265 150' command took 2 ms to send, 1336 ms to get response, and 1345 ms overall
17-03-17 20:18:00.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:18:00.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128578464613298. ------
17-03-17 20:18:00.168 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:00.168 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13513 mm
17-03-17 20:18:00.168 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:18:00.168 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:18:00.168 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 20:18:00.178 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:00.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:18:00.258 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:18:00.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:00.258 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 20:18:00.258 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:18:00.258 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:00.258 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:00.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:18:00.258 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:18:00.268 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:18:00.278 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29520, sync = True, waitForSettling = False)
17-03-17 20:18:00.278 -07 000000448 INF: Z Motor: Moving to -0.135134 mm, started at -0.128578 mm, distance = -6.56 um
17-03-17 20:18:00.278 -07 000000448 INF: FPGA: Xmit ZDACW 29520\n [Z Motor]
17-03-17 20:18:00.278 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:00.278 -07 000000458 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:18:00.278 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 105 ms to get response, and 115 ms overall
17-03-17 20:18:00.278 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 95 ms to get response, and 112 ms overall
17-03-17 20:18:00.278 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:18:00.278 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:00.278 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:18:00.278 -07 000000547 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:18:00.288 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:18:00.288 -07 000000448 INF: FPGA: 'ZDACW 29520' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:00.298 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:18:00.308 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:00.308 -07 000000458 INF: FPGA: Recv ZDACR 29520
17-03-17 20:18:00.318 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:18:00.318 -07 000000448 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:18:00.498 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:18:00.498 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 20:18:00.658 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:18:00.658 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 20:18:00.698 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:00.698 -07 000000478 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:18:00.708 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:18:00.708 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:00.708 -07 000000547 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:18:00.708 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.211 mm/sec
17-03-17 20:18:01.558 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.981281,
17-03-17 20:18:01.658 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:01.658 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:18:01.668 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:01.668 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:01.688 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:18:01.688 -07 000000547 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:18:01.688 -07 000000547 INF: Y Motor: Moved to 73.1763 after 1519 ms (table move)
17-03-17 20:18:01.688 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135134 mm (DAC = 29520)
17-03-17 20:18:01.688 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.698 -07 000000478 INF: FPGA: Recv ZSGSRD 30336
17-03-17 20:18:01.698 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:18:01.698 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30317
17-03-17 20:18:01.708 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.708 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.708 -07 000000478 INF: FPGA: Recv ZSGSRD 30321
17-03-17 20:18:01.718 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.718 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30328
17-03-17 20:18:01.728 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30327
17-03-17 20:18:01.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.738 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.738 -07 000000478 INF: FPGA: Recv ZSGSRD 30331
17-03-17 20:18:01.748 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.748 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.748 -07 000000433 INF: FPGA: Recv ZSGSRD 30331
17-03-17 20:18:01.758 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.758 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30323
17-03-17 20:18:01.768 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.768 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30324
17-03-17 20:18:01.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:01.778 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.778 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:01.778 -07 000000547 INF: FPGA: Recv ZSGSRD 30320
17-03-17 20:18:01.788 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.788 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:01.788 -07 000000448 INF: FPGA: Recv ZPIEZORD 26316
17-03-17 20:18:01.798 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -8.8 V.
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30326 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30326 (-134.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30317 (-134.3 uncal um), Max = 30336 (-134.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30326, posNoise = 10, negNoise = 9
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: After move to -0.135134, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: Settle wait time = 1417 ms, measure time = 103 ms (allowed 150 ms), total time = 1520 ms
17-03-17 20:18:01.798 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:18:01.848 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1678 ms
17-03-17 20:18:01.848 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:18:01.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:01.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:01.848 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:01.848 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:18:01.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:01.848 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:01.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:18:01.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:18:01.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:18:01.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:18:01.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:18:01.858 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:18:01.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:18:01.908 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:18:02.108 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:18:02.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:18:02.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:18:02.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:18:02.148 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:18:02.148 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 20:18:02.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:18:02.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:18:02.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:02.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:18:02.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:18:02.248 -07 000000433 INF: Autofocus start
17-03-17 20:18:02.248 -07 000000433 INF: MeasureProfile start
17-03-17 20:18:02.248 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:02.248 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:02.258 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:18:02.258 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:18:02.258 -07 000000433 INF: MeasureProfile done
17-03-17 20:18:02.258 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:18:02.258 -07 000000433 INF: Autofocus finished
17-03-17 20:18:02.458 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:18:02.458 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:18:02.458 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135144009422178. ----------
17-03-17 20:18:02.468 -07 000000610 INF: Cycle	36	Tile	17	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:18:02.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28027, sync = True, waitForSettling = True)
17-03-17 20:18:02.468 -07 000000610 INF: Z Motor: Moving to -0.128299 mm, started at -0.135144 mm, distance = 6.84 um
17-03-17 20:18:02.468 -07 000000610 INF: FPGA: Xmit ZDACW 28027\n [Z Motor]
17-03-17 20:18:02.468 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:18:02.478 -07 000000610 INF: FPGA: 'ZDACW 28027' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:18:02.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:02.478 -07 000000502 INF: FPGA: Recv ZDACR 28027
17-03-17 20:18:02.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:18:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:18:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29263
17-03-17 20:18:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.658 -07 000000502 INF: FPGA: Recv ZSGSRD 29262
17-03-17 20:18:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29259
17-03-17 20:18:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29263
17-03-17 20:18:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.688 -07 000000415 INF: FPGA: Recv ZSGSRD 29257
17-03-17 20:18:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29260
17-03-17 20:18:02.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:18:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.718 -07 000000415 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:18:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:02.728 -07 000000502 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:18:02.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:02.738 -07 000000502 INF: FPGA: Recv ZPIEZORD 24958
17-03-17 20:18:02.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:02.748 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -9.4 V.
17-03-17 20:18:02.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29261 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29262 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29256 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:18:02.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29261, posNoise = 3, negNoise = 5
17-03-17 20:18:02.748 -07 000000610 INF: Z Motor: After move to -0.128299, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:02.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:18:02.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:02.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:02.748 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:02.748 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:02.748 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:18:02.748 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:02.748 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:18:02.748 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:18:02.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:18:02.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:18:02.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:18:02.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:18:02.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:18:02.758 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:18:02.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:18:02.758 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:18:02.768 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:18:02.768 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:18:02.768 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:18:02.768 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:18:02.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28204 150\n [Camera]
17-03-17 20:18:02.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:18:03.378 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:18:03.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:18:03.378 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:03.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:18:03.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:18:03.388 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:03.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:03.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:18:03.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:03.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:18:03.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:18:03.788 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:18:03.788 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:03.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:18:03.788 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:18:03.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:03.788 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:18:03.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:18:03.788 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:18:03.798 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:18:03.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28204 797
17-03-17 20:18:03.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:18:03.918 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:18:03.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:18:03.918 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:03.928 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:03.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:18:03.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:18:03.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:18:03.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:03.928 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:03.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) start.
17-03-17 20:18:04.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-17 20:18:04.108 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:18:04.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28204 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-17 20:18:04.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:18:04.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128302223491202. ------
17-03-17 20:18:04.118 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13465 mm
17-03-17 20:18:04.118 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:18:04.118 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:04.228 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:04.228 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 20:18:04.238 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29413, sync = True, waitForSettling = False)
17-03-17 20:18:04.238 -07 000000382 INF: Z Motor: Moving to -0.134644 mm, started at -0.128302 mm, distance = -6.34 um
17-03-17 20:18:04.238 -07 000000382 INF: FPGA: Xmit ZDACW 29413\n [Z Motor]
17-03-17 20:18:04.238 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:18:04.238 -07 000000415 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:18:04.238 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:18:04.248 -07 000000382 INF: FPGA: 'ZDACW 29413' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:04.248 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:04.248 -07 000000448 INF: FPGA: Recv ZDACR 29413
17-03-17 20:18:04.258 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:18:04.258 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:04.258 -07 000000382 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:18:04.268 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:04.268 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:18:04.278 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:18:04.278 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:04.278 -07 000000415 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:18:04.278 -07 000000415 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:18:04.278 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:18:04.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:18:04.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:18:04.328 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:04.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1053167664, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:18:04.328 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:18:04.328 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:04.328 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:18:04.328 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:18:04.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:18:04.338 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:18:04.458 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:18:04.458 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:18:04.648 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:18:04.648 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:18:04.678 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:04.688 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:18:04.688 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:18:04.688 -07 000000415 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:04.688 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:18:04.688 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-17 20:18:05.638 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:05.638 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:18:05.648 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:05.648 -07 000000415 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:05.658 -07 000000415 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:18:05.658 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:18:05.658 -07 000000415 INF: Y Motor: Moved to 74.0083 after 1425 ms (table move)
17-03-17 20:18:05.668 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134644 mm (DAC = 29413)
17-03-17 20:18:05.668 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.668 -07 000000569 INF: FPGA: Recv ZSGSRD 30250
17-03-17 20:18:05.678 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.678 -07 000000458 INF: FPGA: Recv ZSGSRD 30242
17-03-17 20:18:05.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30255
17-03-17 20:18:05.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.698 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30251
17-03-17 20:18:05.708 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.708 -07 000000502 INF: FPGA: Recv ZSGSRD 30248
17-03-17 20:18:05.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30248
17-03-17 20:18:05.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30246
17-03-17 20:18:05.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.738 -07 000000458 INF: FPGA: Recv ZSGSRD 30251
17-03-17 20:18:05.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.748 -07 000000415 INF: FPGA: Recv ZSGSRD 30244
17-03-17 20:18:05.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:05.758 -07 000000458 INF: FPGA: Recv ZSGSRD 30249
17-03-17 20:18:05.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.768 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:05.768 -07 000000415 INF: FPGA: Recv ZPIEZORD 26254
17-03-17 20:18:05.778 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.8 V.
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30248 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30248 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30242 (-133.8 uncal um), Max = 30255 (-133.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30248, posNoise = 7, negNoise = 6
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: After move to -0.134644, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: Settle wait time = 1429 ms, measure time = 111 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:18:05.778 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:18:05.818 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1695 ms
17-03-17 20:18:05.818 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:18:05.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:05.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:05.818 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:05.818 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:05.818 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:18:05.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:05.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:18:05.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:18:05.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:18:05.828 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:18:05.838 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:18:05.838 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:18:05.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:18:05.878 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:18:06.738 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:18:06.738 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:18:06.738 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:18:06.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:18:06.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 891 ms to get response, and 898 ms overall
17-03-17 20:18:06.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:18:06.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:18:06.768 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:06.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:18:06.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:06.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:18:06.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:18:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:06.938 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:06.938 -07 000000448 INF: Autofocus start
17-03-17 20:18:06.938 -07 000000448 INF: MeasureProfile start
17-03-17 20:18:06.938 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:06.948 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:18:06.948 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:18:06.948 -07 000000448 INF: MeasureProfile done
17-03-17 20:18:06.948 -07 000000448 INF: X=24  Z correction [um]=0.09150101
17-03-17 20:18:06.948 -07 000000448 INF: Autofocus finished
17-03-17 20:18:07.148 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:18:07.148 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 20:18:07.148 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13464292087512. ----------
17-03-17 20:18:07.158 -07 000000610 INF: Cycle	36	Tile	18	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:18:07.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27946, sync = True, waitForSettling = True)
17-03-17 20:18:07.158 -07 000000610 INF: Z Motor: Moving to -0.127929 mm, started at -0.134643 mm, distance = 6.71 um
17-03-17 20:18:07.158 -07 000000610 INF: FPGA: Xmit ZDACW 27946\n [Z Motor]
17-03-17 20:18:07.158 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:18:07.168 -07 000000610 INF: FPGA: 'ZDACW 27946' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:18:07.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:07.168 -07 000000626 INF: FPGA: Recv ZDACR 27946
17-03-17 20:18:07.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:18:07.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.328 -07 000000569 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:18:07.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.338 -07 000000626 INF: FPGA: Recv ZSGSRD 29201
17-03-17 20:18:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.358 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 3.993549,
17-03-17 20:18:07.358 -07 000000458 INF: FPGA: Recv ZSGSRD 29207
17-03-17 20:18:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:18:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29195
17-03-17 20:18:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:18:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29203
17-03-17 20:18:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:18:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:18:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.428 -07 000000569 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:18:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.448 -07 000000627 INF: FPGA: Recv ZSGSRD 29203
17-03-17 20:18:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:18:07.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.458 -07 000000547 INF: FPGA: Recv ZSGSRD 29211
17-03-17 20:18:07.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:07.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:18:07.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:07.478 -07 000000627 INF: FPGA: Recv ZPIEZORD 24902
17-03-17 20:18:07.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:07.488 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.4 V.
17-03-17 20:18:07.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29203 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29195 (-127.1 uncal um), Max = 29211 (-127.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:18:07.488 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29203, posNoise = 8, negNoise = 8
17-03-17 20:18:07.488 -07 000000610 INF: Z Motor: After move to -0.127929, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:07.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 20:18:07.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:07.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:07.488 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:07.488 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:07.488 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:18:07.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:07.488 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:18:07.488 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:18:07.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:18:07.488 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:18:07.488 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:18:07.488 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:18:07.498 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:18:07.498 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:18:07.498 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:18:07.498 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:18:07.508 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:18:07.508 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:18:07.508 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:18:07.508 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:18:07.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28123 150\n [Camera]
17-03-17 20:18:07.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:18:08.118 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:18:08.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:18:08.118 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:08.118 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:18:08.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:18:08.128 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:08.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:08.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-17 20:18:08.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:08.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:18:08.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28123 797
17-03-17 20:18:08.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:18:08.518 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:18:08.518 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:18:08.518 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:08.518 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:08.518 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:18:08.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:18:08.528 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:18:08.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:08.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:08.538 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:18:08.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:18:08.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:18:08.658 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:08.658 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:18:08.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:18:08.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:08.668 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:08.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:18:08.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:08.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:18:08.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:18:08.848 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:18:08.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28123 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-17 20:18:08.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:18:08.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12792961918698. ------
17-03-17 20:18:08.858 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:08.858 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13433 mm
17-03-17 20:18:08.858 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:18:08.858 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:18:08.858 -07 000000458 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:18:08.858 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:08.858 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29344, sync = True, waitForSettling = False)
17-03-17 20:18:08.858 -07 000000626 INF: Z Motor: Moving to -0.134328 mm, started at -0.127930 mm, distance = -6.40 um
17-03-17 20:18:08.868 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:18:08.868 -07 000000626 INF: FPGA: Xmit ZDACW 29344\n [Z Motor]
17-03-17 20:18:08.868 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:18:08.878 -07 000000626 INF: FPGA: 'ZDACW 29344' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:18:08.878 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:08.878 -07 000000012 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:18:08.888 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:18:08.888 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:18:08.888 -07 000000458 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:08.888 -07 000000458 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:18:08.888 -07 000000458 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:18:08.898 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:08.898 -07 000000512 INF: FPGA: Recv ZDACR 29344
17-03-17 20:18:08.908 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:18:08.908 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:18:08.908 -07 000000626 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:18:09.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:18:09.068 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:18:09.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:09.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:18:09.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:18:09.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:09.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:09.078 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:18:09.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:09.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:18:09.088 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:18:09.088 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:18:09.278 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:18:09.278 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 395 ms overall
17-03-17 20:18:09.308 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:09.308 -07 000000433 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:18:09.318 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:09.318 -07 000000458 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:09.318 -07 000000458 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:18:09.318 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 20:18:10.268 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:10.268 -07 000000433 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:18:10.278 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:10.278 -07 000000458 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:10.288 -07 000000458 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:18:10.288 -07 000000458 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:18:10.288 -07 000000458 INF: Y Motor: Moved to 74.8320 after 1429 ms (table move)
17-03-17 20:18:10.288 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134328 mm (DAC = 29344)
17-03-17 20:18:10.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:18:10.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:18:10.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.298 -07 000000458 INF: FPGA: Recv ZSGSRD 30207
17-03-17 20:18:10.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:18:10.308 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:18:10.318 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.318 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.318 -07 000000501 INF: FPGA: Recv ZSGSRD 30196
17-03-17 20:18:10.328 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.328 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.328 -07 000000547 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:18:10.338 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.338 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.338 -07 000000458 INF: FPGA: Recv ZSGSRD 30203
17-03-17 20:18:10.348 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.348 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.348 -07 000000012 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:18:10.358 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.358 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:18:10.368 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.368 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.368 -07 000000547 INF: FPGA: Recv ZSGSRD 30200
17-03-17 20:18:10.378 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.378 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:10.378 -07 000000012 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:18:10.388 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.388 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:10.388 -07 000000415 INF: FPGA: Recv ZPIEZORD 26181
17-03-17 20:18:10.398 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30201 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30200 (-133.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30196 (-133.5 uncal um), Max = 30207 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30201, posNoise = 6, negNoise = 5
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: After move to -0.134328, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: Settle wait time = 1431 ms, measure time = 101 ms (allowed 150 ms), total time = 1532 ms
17-03-17 20:18:10.398 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:18:10.448 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:18:10.448 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:18:10.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:10.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:10.448 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:18:10.448 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:10.448 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:10.448 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:10.448 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:18:10.448 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:18:10.458 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:18:10.458 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:18:10.458 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:18:10.458 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:18:10.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:18:10.508 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:18:10.708 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:18:10.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:18:10.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:18:10.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:18:10.748 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:18:10.748 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:18:10.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:18:10.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:18:10.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:10.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:18:10.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:18:10.848 -07 000000415 INF: Autofocus start
17-03-17 20:18:10.848 -07 000000415 INF: MeasureProfile start
17-03-17 20:18:10.848 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:18:10.848 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:18:10.858 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:18:10.858 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:18:10.858 -07 000000415 INF: MeasureProfile done
17-03-17 20:18:10.858 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:18:10.858 -07 000000415 INF: Autofocus finished
17-03-17 20:18:11.058 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:18:11.058 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:18:11.058 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134340982904458. ----------
17-03-17 20:18:11.058 -07 000000610 INF: Cycle	36	Tile	19	Exposure Settings		A	412	G	198	T	198	C	412
17-03-17 20:18:11.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27868, sync = True, waitForSettling = True)
17-03-17 20:18:11.068 -07 000000610 INF: Z Motor: Moving to -0.127572 mm, started at -0.134341 mm, distance = 6.77 um
17-03-17 20:18:11.068 -07 000000610 INF: FPGA: Xmit ZDACW 27868\n [Z Motor]
17-03-17 20:18:11.068 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:18:11.078 -07 000000610 INF: FPGA: 'ZDACW 27868' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:18:11.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:18:11.078 -07 000000448 INF: FPGA: Recv ZDACR 27868
17-03-17 20:18:11.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:18:11.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:18:11.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29148
17-03-17 20:18:11.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:18:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.248 -07 000000448 INF: FPGA: Recv ZSGSRD 29145
17-03-17 20:18:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.258 -07 000000618 INF: FPGA: Recv ZSGSRD 29141
17-03-17 20:18:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.318 -07 000000458 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:18:11.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:18:11.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:18:11.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:18:11.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.338 -07 000000012 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:18:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.348 -07 000000012 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:18:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.358 -07 000000012 INF: FPGA: Recv ZSGSRD 29153
17-03-17 20:18:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:18:11.368 -07 000000501 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:18:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:18:11.378 -07 000000501 INF: FPGA: Recv ZPIEZORD 24830
17-03-17 20:18:11.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:11.388 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.252 V. Piezo Error = -9.5 V.
17-03-17 20:18:11.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29147 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29148 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29141 (-126.8 uncal um), Max = 29153 (-126.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:18:11.388 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29147, posNoise = 6, negNoise = 6
17-03-17 20:18:11.388 -07 000000610 INF: Z Motor: After move to -0.127572, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:18:11.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 20:18:11.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:18:11.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:18:11.388 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:18:11.388 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:18:11.388 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:18:11.388 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:18:11.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:18:11.388 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:18:11.388 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:18:11.388 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:18:11.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:18:11.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:18:11.388 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:18:11.388 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:18:11.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:18:11.398 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:18:11.408 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:18:11.408 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:18:11.408 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:18:11.408 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:18:11.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28045 150\n [Camera]
17-03-17 20:18:11.608 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:18:11.768 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 35. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:12.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-17 20:18:12.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-17 20:18:12.018 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:12.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:12.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) start.
17-03-17 20:18:12.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-17 20:18:12.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-17 20:18:12.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:12.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:12.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) start.
17-03-17 20:18:12.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28045 797
17-03-17 20:18:12.358 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-17 20:18:12.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1088589928, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:18:12.418 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:18:12.418 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:12.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1124012192, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:18:12.418 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:18:12.418 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:12.418 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:12.418 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:18:12.418 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:12.428 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:18:12.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-17 20:18:12.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-17 20:18:12.558 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:18:12.558 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:18:12.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:18:12.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-17 20:18:12.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-17 20:18:12.568 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:18:12.568 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:18:12.568 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:18:12.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-17 20:18:12.758 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:18:12.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28045 150' command took 2 ms to send, 1340 ms to get response, and 1344 ms overall
17-03-17 20:18:12.768 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.02213,
17-03-17 20:18:12.948 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:18:12.948 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:18:12.948 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:12.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:18:12.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:18:12.948 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:18:12.948 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:18:12.958 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:18:12.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:18:12.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:18:12.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:18:12.998 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:18:12.998 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:18:13.048 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:18:13.168 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 20:18:13.178 -07 000000610 INF: Imaging Cycle 36: ScanTilesCommand Cycle 36 time end. Duration was 161301 ms.
17-03-17 20:18:13.178 -07 000000610 INF: =================== Cycle #36 ===================
17-03-17 20:18:13.178 -07 000000610 INF: ===================  ===================
17-03-17 20:18:13.188 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:18:13.188 -07 000000626 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 20:18:13.198 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:13.198 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 20:18:13.198 -07 000000382 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 36, FrontChillerTemperature: 4.02213, FrontChillerHeatSinkTemperature: 0.369674, AmbientTemperature: 18.95252, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.72705, GreenLEDSensorTemperature: 26.37561, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 20:18:13.218 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.