17-03-17 20:18:13.268 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:13.268 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:18:13.268 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 20:18:13.268 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:13.268 -07 000000415 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:18:13.278 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:18:13.278 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:13.278 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:18:13.278 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:18:13.278 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:18:13.398 -07 000000547 INF: FPGA: Recv YMVTO 154377 871
17-03-17 20:18:13.398 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-17 20:18:13.398 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 20:18:13.398 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:18:13.398 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.688 mm/sec
17-03-17 20:18:16.398 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:18:16.398 -07 000000433 INF: FPGA: Recv YRDPOS 154379
17-03-17 20:18:16.408 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:16.408 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:18:16.418 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:18:16.418 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:18:16.428 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3154 ms
17-03-17 20:18:16.428 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 60° ===================
17-03-17 20:18:16.428 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:18:16.428 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:18:16.438 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:18:16.438 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:18:16.438 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:18:16.438 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 20:18:16.448 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:18:16.448 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 60° ===================
17-03-17 20:18:16.448 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:16.448 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:18:16.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:16.478 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:18:16.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:18:16.478 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:18:16.768 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:16.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:18:16.798 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:18:16.798 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:18:16.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:16.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:18:16.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:18:16.968 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:16.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:16.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:16.998 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:18:16.998 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:18:16.998 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:18:17.128 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:18:17.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:18.128 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.983999,
17-03-17 20:18:20.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:20.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:20.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:20.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:21.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:21.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:21.228 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:18:21.228 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:21.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:21.388 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:18:21.388 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:18:21.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:21.548 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:18:21.548 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:18:21.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:21.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:21.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:21.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:22.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:22.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:22.168 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:18:22.168 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:23.388 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:18:23.388 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:18:23.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:23.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:18:23.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:18:23.868 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:18:24.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:18:24.028 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:18:24.028 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:18:24.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:24.098 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:18:24.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:18:24.158 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.977204,
17-03-17 20:18:24.198 -07 000000610 INF: =================== Cycle #37, Pumping Reagent CMS (4) ===================
17-03-17 20:18:24.198 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:24.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:24.328 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:18:24.328 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:18:24.328 -07 000000610 INF: =================== Cycle #37, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:18:24.458 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:18:24.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:25.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:25.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:26.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:26.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:26.418 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:18:26.418 -07 000000610 INF: =================== Cycle #37, Pumping Reagent CMS (4) ===================
17-03-17 20:18:26.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:26.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:18:26.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:18:26.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:26.738 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:18:26.738 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:18:26.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:26.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=512, R2=530, Total=1042. Warn if over 250 bubbles per interval.
17-03-17 20:18:26.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:26.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:27.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:27.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:27.358 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:18:27.358 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:28.578 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:18:28.578 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:18:28.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:28.598 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:18:28.598 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:18:28.598 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:18:28.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:18:28.768 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:18:28.768 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:18:28.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:28.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:18:28.838 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:18:28.938 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:28.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:28.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:28.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:18:28.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:18:28.968 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:18:29.098 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:18:29.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:29.518 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.979922,
17-03-17 20:18:30.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:30.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:30.688 -07 000000610 INF: LanePump: Waited 1550 ms for pump motion to complete
17-03-17 20:18:30.688 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:30.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:30.848 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:18:30.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:18:30.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:31.008 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:18:31.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:18:31.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:31.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:31.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:31.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:31.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:31.628 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:18:31.628 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:31.628 -07 000000433 INF: WaitCommand(10000) start
17-03-17 20:18:31.628 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:18:31.628 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:18:31.768 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 20:18:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=513, R2=530, Total=1043. Warn if over 250 bubbles per interval.
17-03-17 20:18:32.848 -07 000000547 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:18:32.848 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 20:18:32.878 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:18:32.878 -07 000000547 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:18:33.008 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:18:33.048 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:34.578 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:34.608 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:34.888 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.024884,
17-03-17 20:18:35.028 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:35.058 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:35.058 -07 000000547 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:18:35.058 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:18:35.058 -07 000000547 INF: ===================  ===================
17-03-17 20:18:36.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:18:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=513, R2=531, Total=1044. Warn if over 250 bubbles per interval.
17-03-17 20:18:40.248 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.02213,
17-03-17 20:18:41.638 -07 000000433 INF: WaitCommand(10000) end
17-03-17 20:18:41.638 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:41.638 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:41.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:41.668 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:18:41.668 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:18:41.668 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:18:41.768 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:18:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=513, R2=531, Total=1044. Warn if over 250 bubbles per interval.
17-03-17 20:18:41.798 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:18:41.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:45.608 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.996267,
17-03-17 20:18:46.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 20:18:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=515, R2=533, Total=1048. Warn if over 250 bubbles per interval.
17-03-17 20:18:47.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:47.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:48.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:48.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:48.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:48.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:49.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:49.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:49.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:49.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:49.798 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:18:49.798 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:49.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:49.958 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:18:49.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:18:50.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:50.118 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:18:50.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:18:50.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:50.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:50.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:50.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:50.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:50.738 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:18:50.738 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:50.968 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.015368,
17-03-17 20:18:51.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 20:18:51.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=519, R2=537, Total=1056. Warn if over 250 bubbles per interval.
17-03-17 20:18:51.958 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:18:51.958 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:18:51.958 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:51.978 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:18:51.978 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:18:51.978 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:18:52.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:18:52.208 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:18:52.208 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:18:52.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:52.278 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:18:52.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:18:52.378 -07 000000610 INF: =================== Cycle #37, Pumping Reagent IMT (1) ===================
17-03-17 20:18:52.378 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:52.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:52.408 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:18:52.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:18:52.408 -07 000000610 INF: =================== Cycle #37, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:18:52.538 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:18:52.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:54.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:54.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:54.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:54.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:54.498 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 20:18:54.498 -07 000000610 INF: =================== Cycle #37, Pumping Reagent IMT (1) ===================
17-03-17 20:18:54.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:54.658 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:18:54.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:18:54.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:54.818 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:18:54.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:18:54.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:54.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:54.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:55.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:55.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:55.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:18:55.438 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:56.328 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.000345,
17-03-17 20:18:56.658 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:18:56.658 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:18:56.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:56.678 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:18:56.678 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:18:56.678 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:18:56.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:18:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:18:56.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:18:56.928 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:18:56.928 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:18:56.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:18:56.998 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:18:56.998 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:18:57.098 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:57.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:18:57.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:57.128 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:18:57.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:18:57.128 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:18:57.258 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:18:57.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:18:58.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:58.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:58.198 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 20:18:58.198 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:18:58.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:58.358 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:18:58.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:18:58.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:18:58.518 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:18:58.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:18:58.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:18:58.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:18:58.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:59.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:18:59.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:18:59.138 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:18:59.138 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:59.138 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 65° ===================
17-03-17 20:18:59.138 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:18:59.138 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:18:59.138 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:18:59.148 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:18:59.148 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:18:59.148 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 20:18:59.158 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:18:59.158 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 65° ===================
17-03-17 20:18:59.158 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:18:59.158 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:19:01.688 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.99219,
17-03-17 20:19:01.768 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:06.768 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:06.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:07.048 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.026244,
17-03-17 20:19:11.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:12.408 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.023489,
17-03-17 20:19:16.768 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:17.768 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.996267,
17-03-17 20:19:21.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:23.128 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.008536,
17-03-17 20:19:26.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:29.168 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:19:29.168 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:19:29.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:19:29.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:19:29.298 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:19:29.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:19:29.298 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:19:29.328 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.997626,
17-03-17 20:19:29.428 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:19:29.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:19:30.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:19:30.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:19:30.038 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:19:30.038 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:19:30.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:19:30.198 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:19:30.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:19:30.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:19:30.358 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:19:30.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:19:30.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:19:30.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:19:30.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:19:30.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:19:30.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:19:30.978 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:19:30.978 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:19:30.978 -07 000000626 INF: WaitCommand(30000) start
17-03-17 20:19:30.978 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:19:30.978 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:19:31.768 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:32.198 -07 000000433 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:19:32.198 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 20:19:32.228 -07 000000433 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:19:32.228 -07 000000433 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:19:32.358 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:19:32.398 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:19:34.738 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:19:35.188 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:19:35.488 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.985358,
17-03-17 20:19:35.608 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:19:35.638 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:19:35.638 -07 000000433 INF: LanePump: Waited 3239 ms for pump motion to complete
17-03-17 20:19:35.638 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:19:35.638 -07 000000433 INF: ===================  ===================
17-03-17 20:19:36.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:36.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:40.848 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.99219,
17-03-17 20:19:41.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:46.218 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.969015,
17-03-17 20:19:46.768 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:46.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:52.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:52.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:52.488 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.996267,
17-03-17 20:19:56.768 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:19:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:19:57.848 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.003063,
17-03-17 20:20:00.988 -07 000000626 INF: WaitCommand(30000) end
17-03-17 20:20:00.988 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 22° ===================
17-03-17 20:20:00.988 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:20:00.988 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:20:00.988 -07 000000433 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:20:00.998 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:00.998 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:20:00.998 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 20:20:01.008 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:01.008 -07 000000610 INF: =================== Cycle #37, Flow Cell Temp 22° ===================
17-03-17 20:20:01.008 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:20:01.008 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:20:01.008 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:20:01.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:01.048 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:20:01.048 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:20:01.048 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:20:01.178 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:20:01.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:01.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:01.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:03.218 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.023489,
17-03-17 20:20:04.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:04.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:04.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:04.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:05.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:05.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:05.278 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:20:05.278 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:20:05.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:05.438 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:20:05.438 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:20:05.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:05.598 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:20:05.598 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:20:05.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:20:05.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:20:05.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:06.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:06.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:06.218 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:20:06.218 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:20:06.768 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:06.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:07.438 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:20:07.438 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:20:07.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:07.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:20:07.458 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:20:07.458 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:20:07.608 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:20:07.628 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:20:07.628 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:20:07.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:07.698 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:20:07.698 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:20:07.798 -07 000000610 INF: =================== Cycle #37, Pumping Reagent USM (2) ===================
17-03-17 20:20:07.798 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:20:07.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:07.828 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:20:07.828 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:20:07.828 -07 000000610 INF: =================== Cycle #37, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:20:07.958 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:20:07.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:08.588 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.016692,
17-03-17 20:20:09.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:09.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:09.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:09.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:09.918 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:20:09.918 -07 000000610 INF: =================== Cycle #37, Pumping Reagent USM (2) ===================
17-03-17 20:20:10.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:10.078 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:20:10.078 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:20:10.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:10.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:20:10.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:20:10.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:20:10.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:20:10.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:10.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:10.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:10.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:20:10.858 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:20:11.768 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:11.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:12.078 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:20:12.078 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:20:12.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:12.098 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:20:12.098 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:20:12.098 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:20:12.248 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:20:12.268 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:20:12.268 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:20:12.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:12.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:20:12.338 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:20:12.438 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:20:12.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:20:12.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:12.468 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:20:12.468 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:20:12.468 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:20:12.598 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:20:12.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:13.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:13.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:13.538 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:20:13.538 -07 000000610 INF: =================== Cycle #37, Pumping Reagent PR2 (3) ===================
17-03-17 20:20:13.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:13.698 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:20:13.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:20:13.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:20:13.858 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:20:13.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:20:13.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:20:13.958 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.004458,
17-03-17 20:20:13.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:20:14.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:14.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:14.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:14.478 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:20:14.478 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:20:14.478 -07 000000501 INF: WaitCommand(10000) start
17-03-17 20:20:14.478 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:20:14.478 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:20:15.698 -07 000000433 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:20:15.698 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 20:20:15.728 -07 000000433 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:20:15.728 -07 000000433 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:20:15.858 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:20:15.898 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:16.768 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:17.428 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:17.458 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:20:17.878 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:20:17.908 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:20:17.908 -07 000000433 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:20:17.908 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:20:17.908 -07 000000433 INF: ===================  ===================
17-03-17 20:20:19.328 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.993549,
17-03-17 20:20:21.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:21.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:24.488 -07 000000501 INF: WaitCommand(10000) end
17-03-17 20:20:24.488 -07 000000610 INF: =================== Cycle #37, Imaging ===================
17-03-17 20:20:24.488 -07 000000610 INF: Imaging Cycle 37: ScanTilesCommand Cycle 37 time start.
17-03-17 20:20:24.488 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:20:24.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:24.518 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:20:24.518 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:20:24.518 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:20:24.698 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.018051,
17-03-17 20:20:24.818 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:20:24.838 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:20:24.838 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:20:24.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:20:24.908 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:20:24.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:24.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:24.908 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:20:24.908 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:24.908 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:20:24.918 -07 000000462 INF: FPGA: Recv EXLED1ON 
17-03-17 20:20:24.918 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:20:24.918 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:20:24.918 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23147
17-03-17 20:20:24.928 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:24.928 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23147 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.7 mW
17-03-17 20:20:24.928 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:20:24.928 -07 000000623 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:20:24.938 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:24.938 -07 000000501 INF: RedLED: LED was on for 17 ms
17-03-17 20:20:24.938 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:20:24.938 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:20:24.938 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:24.938 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:20:24.938 -07 000000626 INF: FPGA: Recv EXLED2ON 
17-03-17 20:20:24.948 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:24.948 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:20:24.948 -07 000000478 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 20:20:24.958 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:24.958 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 20:20:24.958 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:20:24.958 -07 000000433 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:20:24.968 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:24.968 -07 000000501 INF: GreenLED: LED was on for 19 ms
17-03-17 20:20:24.968 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:20:24.968 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:20:24.968 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 20:20:24.978 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:24.978 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:20:25.478 -07 000000462 INF: FPGA: Recv EMOUT
17-03-17 20:20:25.478 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:20:25.478 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:20:25.478 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 20:20:25.488 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:25.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:20:25.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127569863307042. ------
17-03-17 20:20:25.488 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:25.488 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17936 mm
17-03-17 20:20:25.488 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:25.488 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:20:25.488 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 20:20:25.488 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:25.488 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 39182, sync = True, waitForSettling = False)
17-03-17 20:20:25.488 -07 000000623 INF: Z Motor: Moving to -0.179364 mm, started at -0.127570 mm, distance = -51.79 um
17-03-17 20:20:25.498 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:25.498 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:25.498 -07 000000433 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:20:25.508 -07 000000623 INF: FPGA: Xmit ZDACW 39182\n [Z Motor]
17-03-17 20:20:25.508 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:20:25.508 -07 000000462 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:25.508 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:20:25.508 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:20:25.508 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:20:25.518 -07 000000623 INF: FPGA: 'ZDACW 39182' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:20:25.518 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:20:25.528 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:20:25.538 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:25.538 -07 000000626 INF: FPGA: Recv ZDACR 39182
17-03-17 20:20:25.548 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:20:25.548 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:20:25.718 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:20:25.718 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:20:26.768 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:27.208 -07 000000415 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:20:27.208 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1702 ms overall
17-03-17 20:20:27.208 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:20:27.208 -07 000000462 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:20:27.208 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.468 mm, average velocity = 9.088 mm/sec
17-03-17 20:20:30.058 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:30.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.016692,
17-03-17 20:20:30.058 -07 000000501 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:20:30.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.068 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:30.088 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:30.088 -07 000000462 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:20:30.088 -07 000000462 INF: Y Motor: Moved to 59.9111 after 4597 ms
17-03-17 20:20:30.088 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179364 mm (DAC = 39182)
17-03-17 20:20:30.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.108 -07 000000433 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:20:30.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:20:30.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.118 -07 000000478 INF: FPGA: Recv ZSGSRD 37206
17-03-17 20:20:30.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.128 -07 000000501 INF: FPGA: Recv ZSGSRD 37210
17-03-17 20:20:30.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.138 -07 000000551 INF: FPGA: Recv ZSGSRD 37209
17-03-17 20:20:30.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.148 -07 000000626 INF: FPGA: Recv ZSGSRD 37207
17-03-17 20:20:30.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.158 -07 000000462 INF: FPGA: Recv ZSGSRD 37212
17-03-17 20:20:30.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.168 -07 000000501 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:20:30.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.178 -07 000000433 INF: FPGA: Recv ZSGSRD 37210
17-03-17 20:20:30.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.188 -07 000000626 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:20:30.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:30.198 -07 000000462 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:20:30.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:30.208 -07 000000501 INF: FPGA: Recv ZPIEZORD 33646
17-03-17 20:20:30.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.979 V. Piezo Error = -7.9 V.
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37210 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37210 (-178.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37206 (-178.4 uncal um), Max = 37213 (-178.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37210, posNoise = 3, negNoise = 4
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: After move to -0.179364, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: Settle wait time = 4599 ms, measure time = 123 ms (allowed 150 ms), total time = 4722 ms
17-03-17 20:20:30.218 -07 000000431 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:30.248 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 20:20:30.248 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:30.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:30.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:30.248 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:30.248 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:30.248 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:20:30.248 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:30.248 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:30.248 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:20:30.278 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:20:30.278 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:20:30.278 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:20:30.278 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:20:30.288 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:20:30.288 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:20:30.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:20:30.338 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:20:30.538 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:20:30.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:20:30.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:20:30.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:20:30.578 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:20:30.578 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:20:30.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:20:30.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:20:30.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:30.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:20:30.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:20:30.778 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:30.778 -07 000000415 INF: Image SNR check: start
17-03-17 20:20:30.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:30.788 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:30.788 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:20:30.788 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=65.09]
17-03-17 20:20:30.788 -07 000000415 INF: Autofocus start
17-03-17 20:20:30.788 -07 000000415 INF: MeasureProfile start
17-03-17 20:20:30.808 -07 000000415 INF: MeasureProfile done
17-03-17 20:20:30.808 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:20:30.808 -07 000000415 INF: Autofocus finished
17-03-17 20:20:30.988 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:20:30.988 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:20:30.988 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.17936828580606. ----------
17-03-17 20:20:30.988 -07 000000610 INF: Cycle	37	Tile	1	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:30.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37697, sync = True, waitForSettling = True)
17-03-17 20:20:30.998 -07 000000610 INF: Z Motor: Moving to -0.172566 mm, started at -0.179368 mm, distance = 6.80 um
17-03-17 20:20:30.998 -07 000000610 INF: FPGA: Xmit ZDACW 37697\n [Z Motor]
17-03-17 20:20:30.998 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:20:31.008 -07 000000610 INF: FPGA: 'ZDACW 37697' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:31.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:31.008 -07 000000462 INF: FPGA: Recv ZDACR 37697
17-03-17 20:20:31.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36147
17-03-17 20:20:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:20:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36155
17-03-17 20:20:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.198 -07 000000501 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:20:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.208 -07 000000462 INF: FPGA: Recv ZSGSRD 36155
17-03-17 20:20:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:20:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.228 -07 000000541 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:20:31.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.238 -07 000000478 INF: FPGA: Recv ZSGSRD 36145
17-03-17 20:20:31.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:31.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:20:31.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:31.258 -07 000000480 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:20:31.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:31.268 -07 000000478 INF: FPGA: Recv ZPIEZORD 32231
17-03-17 20:20:31.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:31.278 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.7 V.
17-03-17 20:20:31.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36152 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36154 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36145 (-171.6 uncal um), Max = 36159 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:20:31.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36152, posNoise = 7, negNoise = 7
17-03-17 20:20:31.278 -07 000000610 INF: Z Motor: After move to -0.172566, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:31.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:20:31.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:31.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:31.278 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:31.278 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:31.278 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:31.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:31.278 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:31.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:31.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:20:31.278 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:31.278 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:20:31.278 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:20:31.288 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:31.288 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:31.298 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:20:31.298 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:31.308 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 20:20:31.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:31.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:20:31.308 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:31.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:20:31.318 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 20:20:31.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37874 150\n [Camera]
17-03-17 20:20:31.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:20:31.768 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:31.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:31.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:31.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:31.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:31.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:31.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:31.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:31.948 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:31.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 20:20:31.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:31.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:20:32.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37874 798
17-03-17 20:20:32.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:32.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:20:32.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:20:32.348 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:32.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:20:32.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:20:32.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:32.348 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:32.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:32.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:20:32.358 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:20:32.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:32.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:32.478 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:32.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:32.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:32.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:32.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:32.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:20:32.488 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:32.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:20:32.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:20:32.668 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:32.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37874 150' command took 2 ms to send, 1339 ms to get response, and 1348 ms overall
17-03-17 20:20:32.678 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172992
17-03-17 20:20:32.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17299 mm
17-03-17 20:20:32.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:32.678 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:20:32.678 -07 000000541 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:20:32.678 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:32.678 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37790, sync = True, waitForSettling = False)
17-03-17 20:20:32.678 -07 000000415 INF: Z Motor: Moving to -0.172992 mm, started at -0.172571 mm, distance = -0.42 um
17-03-17 20:20:32.678 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:20:32.688 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:32.688 -07 000000541 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:32.688 -07 000000541 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:32.688 -07 000000541 INF: Y Motor: Moving 1330 steps2
17-03-17 20:20:32.688 -07 000000415 INF: FPGA: Xmit ZDACW 37790\n [Z Motor]
17-03-17 20:20:32.688 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:20:32.698 -07 000000415 INF: FPGA: 'ZDACW 37790' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:20:32.698 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:32.698 -07 000000480 INF: FPGA: Recv ZDACR 37790
17-03-17 20:20:32.708 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:32.708 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:32.708 -07 000000415 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 20:20:32.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:20:32.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:20:32.888 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:32.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 20:20:32.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:20:32.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:32.898 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:20:32.898 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 20:20:32.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:32.908 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 20:20:33.078 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:20:33.078 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:33.108 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:33.108 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:20:33.118 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:33.118 -07 000000541 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:33.118 -07 000000541 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:20:33.118 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 20:20:34.068 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:34.068 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:20:34.078 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:34.078 -07 000000541 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:34.098 -07 000000541 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:34.098 -07 000000541 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:20:34.098 -07 000000541 INF: Y Motor: Moved to 60.7334 after 1419 ms (table move)
17-03-17 20:20:34.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172992 mm (DAC = 37790)
17-03-17 20:20:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36218
17-03-17 20:20:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.108 -07 000000541 INF: FPGA: Recv ZSGSRD 36214
17-03-17 20:20:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.118 -07 000000462 INF: FPGA: Recv ZSGSRD 36216
17-03-17 20:20:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.128 -07 000000541 INF: FPGA: Recv ZSGSRD 36218
17-03-17 20:20:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36224
17-03-17 20:20:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36221
17-03-17 20:20:34.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36225
17-03-17 20:20:34.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36221
17-03-17 20:20:34.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36217
17-03-17 20:20:34.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36215
17-03-17 20:20:34.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:34.198 -07 000000501 INF: FPGA: Recv ZPIEZORD 32353
17-03-17 20:20:34.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.5 V.
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36219 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36218 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36214 (-172.1 uncal um), Max = 36225 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36219, posNoise = 6, negNoise = 5
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: After move to -0.172992, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 105 ms (allowed 150 ms), total time = 1526 ms
17-03-17 20:20:34.208 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:34.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 20:20:34.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:34.258 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.173001891573575. ----------
17-03-17 20:20:34.258 -07 000000610 INF: Cycle	37	Tile	2	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:34.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37613, sync = True, waitForSettling = True)
17-03-17 20:20:34.258 -07 000000610 INF: Z Motor: Moving to -0.172181 mm, started at -0.173002 mm, distance = 0.82 um
17-03-17 20:20:34.258 -07 000000610 INF: FPGA: Xmit ZDACW 37613\n [Z Motor]
17-03-17 20:20:34.258 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:20:34.268 -07 000000610 INF: FPGA: 'ZDACW 37613' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:34.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:34.268 -07 000000480 INF: FPGA: Recv ZDACR 37613
17-03-17 20:20:34.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.428 -07 000000541 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:20:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:20:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:20:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.458 -07 000000415 INF: FPGA: Recv ZSGSRD 36099
17-03-17 20:20:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:20:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.478 -07 000000462 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:20:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:20:34.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.498 -07 000000501 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:20:34.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.508 -07 000000480 INF: FPGA: Recv ZSGSRD 36094
17-03-17 20:20:34.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:34.518 -07 000000501 INF: FPGA: Recv ZSGSRD 36087
17-03-17 20:20:34.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:34.528 -07 000000480 INF: FPGA: Recv ZPIEZORD 32189
17-03-17 20:20:34.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:34.538 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.6 V.
17-03-17 20:20:34.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36092 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36087 (-171.3 uncal um), Max = 36099 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:20:34.538 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 7, negNoise = 5
17-03-17 20:20:34.538 -07 000000610 INF: Z Motor: After move to -0.172181, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:34.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:20:34.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:34.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:34.538 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:34.538 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:34.538 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:34.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:34.538 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:34.538 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:34.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:34.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:34.538 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:20:34.538 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:34.548 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:20:34.548 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:34.548 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:20:34.548 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:34.558 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:20:34.558 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:34.558 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:20:34.558 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:20:34.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37790 150\n [Camera]
17-03-17 20:20:34.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:20:35.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:35.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:35.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:35.178 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:35.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 20:20:35.178 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:35.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:35.178 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:35.178 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:35.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) start.
17-03-17 20:20:35.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37790 798
17-03-17 20:20:35.428 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.018051,
17-03-17 20:20:35.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-17 20:20:35.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:20:35.558 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:20:35.558 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:35.558 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:35.568 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:20:35.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:20:35.568 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:20:35.568 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:35.568 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:35.568 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:20:35.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:35.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:35.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:35.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:35.828 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:35.828 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:35.838 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:35.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:20:35.838 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:35.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:20:35.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:20:35.908 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:35.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37790 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall
17-03-17 20:20:35.908 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172868
17-03-17 20:20:35.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17287 mm
17-03-17 20:20:35.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:35.918 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:20:35.918 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:20:35.918 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37763, sync = True, waitForSettling = False)
17-03-17 20:20:35.918 -07 000000438 INF: Z Motor: Moving to -0.172868 mm, started at -0.172186 mm, distance = -0.68 um
17-03-17 20:20:35.918 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:35.918 -07 000000480 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:20:35.928 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:35.928 -07 000000501 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:35.928 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:35.928 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:20:35.928 -07 000000438 INF: FPGA: Xmit ZDACW 37763\n [Z Motor]
17-03-17 20:20:35.928 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:20:35.938 -07 000000438 INF: FPGA: 'ZDACW 37763' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:20:35.938 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:35.938 -07 000000433 INF: FPGA: Recv ZDACR 37763
17-03-17 20:20:35.948 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:35.948 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:35.948 -07 000000438 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:20:36.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:20:36.238 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:20:36.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:36.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:20:36.238 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:20:36.238 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:36.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:36.248 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:36.248 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:20:36.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:20:36.318 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:20:36.318 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:36.358 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:36.358 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:20:36.368 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:36.368 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:36.368 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:20:36.368 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 20:20:36.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:36.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:37.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:37.318 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:20:37.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:37.328 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:37.348 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:37.348 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:20:37.348 -07 000000501 INF: Y Motor: Moved to 61.5640 after 1432 ms (table move)
17-03-17 20:20:37.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172868 mm (DAC = 37763)
17-03-17 20:20:37.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.348 -07 000000480 INF: FPGA: Recv ZSGSRD 36192
17-03-17 20:20:37.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:20:37.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.358 -07 000000623 INF: FPGA: Recv ZSGSRD 36193
17-03-17 20:20:37.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36199
17-03-17 20:20:37.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36204
17-03-17 20:20:37.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36201
17-03-17 20:20:37.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.398 -07 000000623 INF: FPGA: Recv ZSGSRD 36211
17-03-17 20:20:37.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:37.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.408 -07 000000415 INF: FPGA: Recv ZSGSRD 36206
17-03-17 20:20:37.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.418 -07 000000431 INF: FPGA: Recv ZSGSRD 36186
17-03-17 20:20:37.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.428 -07 000000415 INF: FPGA: Recv ZSGSRD 36189
17-03-17 20:20:37.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36190
17-03-17 20:20:37.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:37.448 -07 000000462 INF: FPGA: Recv ZPIEZORD 32362
17-03-17 20:20:37.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.5 V.
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36197 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36196 (-172.0 uncal um), StdDev = 8 (0.1 uncal um), Range = 25 (0.2 uncal um), Min = 36186 (-171.9 uncal um), Max = 36211 (-172.1 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36197, posNoise = 14, negNoise = 11
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: After move to -0.172868, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:20:37.458 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:37.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:20:37.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:37.508 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.172860558906456. ----------
17-03-17 20:20:37.508 -07 000000610 INF: Cycle	37	Tile	3	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:37.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37586, sync = True, waitForSettling = True)
17-03-17 20:20:37.508 -07 000000610 INF: Z Motor: Moving to -0.172058 mm, started at -0.172861 mm, distance = 0.80 um
17-03-17 20:20:37.508 -07 000000610 INF: FPGA: Xmit ZDACW 37586\n [Z Motor]
17-03-17 20:20:37.508 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:20:37.518 -07 000000610 INF: FPGA: 'ZDACW 37586' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:37.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:37.518 -07 000000462 INF: FPGA: Recv ZDACR 37586
17-03-17 20:20:37.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:37.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36065
17-03-17 20:20:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36077
17-03-17 20:20:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.698 -07 000000462 INF: FPGA: Recv ZSGSRD 36084
17-03-17 20:20:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.708 -07 000000415 INF: FPGA: Recv ZSGSRD 36072
17-03-17 20:20:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.718 -07 000000501 INF: FPGA: Recv ZSGSRD 36062
17-03-17 20:20:37.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.728 -07 000000431 INF: FPGA: Recv ZSGSRD 36079
17-03-17 20:20:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.738 -07 000000501 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:20:37.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.748 -07 000000415 INF: FPGA: Recv ZSGSRD 36077
17-03-17 20:20:37.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.758 -07 000000462 INF: FPGA: Recv ZSGSRD 36066
17-03-17 20:20:37.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:37.768 -07 000000623 INF: FPGA: Recv ZSGSRD 36078
17-03-17 20:20:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:37.778 -07 000000415 INF: FPGA: Recv ZPIEZORD 32157
17-03-17 20:20:37.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:37.788 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.735 V. Piezo Error = -8.7 V.
17-03-17 20:20:37.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36073 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36062 (-171.1 uncal um), Max = 36084 (-171.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:20:37.788 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36073, posNoise = 11, negNoise = 11
17-03-17 20:20:37.788 -07 000000610 INF: Z Motor: After move to -0.172058, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:37.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:20:37.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:37.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:37.788 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:37.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:37.788 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:37.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:37.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:37.788 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:37.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:37.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:37.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:37.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:37.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:37.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:37.798 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:20:37.798 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:37.808 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:20:37.808 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:37.808 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:20:37.808 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:37.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37763 150\n [Camera]
17-03-17 20:20:38.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:20:38.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:38.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:38.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:38.428 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:38.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:20:38.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:38.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:38.428 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:38.428 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:38.428 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 20:20:38.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37763 800
17-03-17 20:20:38.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:38.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:20:38.818 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:20:38.818 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:38.818 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:38.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:20:38.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:20:38.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:38.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:38.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:20:38.828 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:20:38.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:38.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:38.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:38.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:38.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1057361968, 0x0, 391868352) start.
17-03-17 20:20:38.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:38.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:38.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:38.978 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:38.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1092784232, 0x0, 418435064) start.
17-03-17 20:20:39.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:20:39.158 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:39.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37763 150' command took 4 ms to send, 1338 ms to get response, and 1349 ms overall
17-03-17 20:20:39.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:20:39.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.172063956600878. ------
17-03-17 20:20:39.168 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:39.168 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17800 mm
17-03-17 20:20:39.168 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:39.168 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:20:39.168 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:20:39.168 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38884, sync = True, waitForSettling = False)
17-03-17 20:20:39.168 -07 000000462 INF: Z Motor: Moving to -0.178000 mm, started at -0.172064 mm, distance = -5.94 um
17-03-17 20:20:39.168 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:39.178 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:39.178 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:39.178 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:20:39.188 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:20:39.188 -07 000000431 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:39.188 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:39.188 -07 000000431 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:20:39.188 -07 000000462 INF: FPGA: Xmit ZDACW 38884\n [Z Motor]
17-03-17 20:20:39.188 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:20:39.198 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:20:39.198 -07 000000462 INF: FPGA: 'ZDACW 38884' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:20:39.208 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:39.218 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:39.218 -07 000000478 INF: FPGA: Recv ZDACR 38884
17-03-17 20:20:39.228 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:20:39.228 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:20:39.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1057361968, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:20:39.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:20:39.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:39.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1092784232, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:20:39.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:20:39.358 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:39.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:39.358 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:20:39.358 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:39.368 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:20:39.398 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:20:39.398 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:20:39.578 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:20:39.578 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:39.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:39.618 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:20:39.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:20:39.628 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:39.628 -07 000000431 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:20:39.628 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 20:20:40.578 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:40.578 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:20:40.588 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:40.588 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:40.608 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:40.608 -07 000000431 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:20:40.608 -07 000000431 INF: Y Motor: Moved to 62.3955 after 1433 ms (table move)
17-03-17 20:20:40.608 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178000 mm (DAC = 38884)
17-03-17 20:20:40.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.608 -07 000000462 INF: FPGA: Recv ZSGSRD 36999
17-03-17 20:20:40.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:40.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.618 -07 000000478 INF: FPGA: Recv ZSGSRD 36995
17-03-17 20:20:40.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.628 -07 000000541 INF: FPGA: Recv ZSGSRD 36995
17-03-17 20:20:40.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.638 -07 000000462 INF: FPGA: Recv ZSGSRD 36995
17-03-17 20:20:40.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.648 -07 000000462 INF: FPGA: Recv ZSGSRD 37002
17-03-17 20:20:40.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.658 -07 000000462 INF: FPGA: Recv ZSGSRD 37000
17-03-17 20:20:40.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36999
17-03-17 20:20:40.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.678 -07 000000431 INF: FPGA: Recv ZSGSRD 37003
17-03-17 20:20:40.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36989
17-03-17 20:20:40.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:40.698 -07 000000433 INF: FPGA: Recv ZSGSRD 36994
17-03-17 20:20:40.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.708 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:40.708 -07 000000433 INF: FPGA: Recv ZPIEZORD 33415
17-03-17 20:20:40.718 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -7.9 V.
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36997 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36997 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36989 (-177.1 uncal um), Max = 37003 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36997, posNoise = 6, negNoise = 8
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: After move to -0.178000, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:20:40.718 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:40.768 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:20:40.768 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:40.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:40.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:40.768 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:40.768 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:40.768 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:20:40.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:40.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:20:40.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:20:40.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:20:40.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:20:40.788 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.981281,
17-03-17 20:20:40.788 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:20:40.788 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:20:40.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:20:40.848 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:20:41.048 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:20:41.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:20:41.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:20:41.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:20:41.088 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:20:41.088 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:20:41.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 300 ms overall
17-03-17 20:20:41.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:20:41.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:41.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:20:41.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:20:41.188 -07 000000415 INF: Autofocus start
17-03-17 20:20:41.188 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:41.298 -07 000000415 INF: MeasureProfile start
17-03-17 20:20:41.298 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:41.308 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 111 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 20:20:41.308 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:20:41.308 -07 000000415 INF: MeasureProfile done
17-03-17 20:20:41.308 -07 000000415 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:20:41.308 -07 000000415 INF: Autofocus finished
17-03-17 20:20:41.508 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:20:41.508 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:20:41.518 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177999928619865. ----------
17-03-17 20:20:41.518 -07 000000610 INF: Cycle	37	Tile	4	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:41.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-17 20:20:41.518 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.178000 mm, distance = 6.96 um
17-03-17 20:20:41.528 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-17 20:20:41.528 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:20:41.538 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:20:41.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:41.538 -07 000000478 INF: FPGA: Recv ZDACR 37364
17-03-17 20:20:41.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:41.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35914
17-03-17 20:20:41.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:41.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:20:41.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.718 -07 000000480 INF: FPGA: Recv ZSGSRD 35913
17-03-17 20:20:41.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.728 -07 000000480 INF: FPGA: Recv ZSGSRD 35914
17-03-17 20:20:41.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.738 -07 000000431 INF: FPGA: Recv ZSGSRD 35916
17-03-17 20:20:41.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:20:41.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35915
17-03-17 20:20:41.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.768 -07 000000415 INF: FPGA: Recv ZSGSRD 35919
17-03-17 20:20:41.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.778 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:41.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:20:41.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:41.788 -07 000000431 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:20:41.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:41.798 -07 000000431 INF: FPGA: Recv ZPIEZORD 31984
17-03-17 20:20:41.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:41.808 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.7 V.
17-03-17 20:20:41.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35915 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35919 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:20:41.808 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35915, posNoise = 4, negNoise = 4
17-03-17 20:20:41.808 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:41.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 20:20:41.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:41.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:41.808 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:41.808 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:41.808 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:41.808 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:41.808 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:41.808 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:41.808 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:41.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:41.808 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:41.808 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:41.818 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:20:41.818 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:41.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:41.818 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:41.828 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:20:41.828 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:20:41.828 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:20:41.828 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:20:41.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37540 150\n [Camera]
17-03-17 20:20:42.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:20:42.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:42.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:42.448 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:42.448 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:42.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:42.448 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:42.458 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:42.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:20:42.458 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:42.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:20:42.638 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 798
17-03-17 20:20:42.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:42.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:20:42.838 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:20:42.838 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:42.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:20:42.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:20:42.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:42.838 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:42.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:42.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:20:42.848 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:20:42.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:42.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:42.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:42.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:42.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:42.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 20:20:42.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:42.988 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:43.108 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:43.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:20:43.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:20:43.178 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:43.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37540 150' command took 2 ms to send, 1336 ms to get response, and 1352 ms overall
17-03-17 20:20:43.178 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171481
17-03-17 20:20:43.178 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17148 mm
17-03-17 20:20:43.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:43.188 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:20:43.188 -07 000000415 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:20:43.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:43.188 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37460, sync = True, waitForSettling = False)
17-03-17 20:20:43.188 -07 000000626 INF: Z Motor: Moving to -0.171481 mm, started at -0.171049 mm, distance = -0.43 um
17-03-17 20:20:43.188 -07 000000476 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:20:43.198 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:43.198 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:43.198 -07 000000415 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:43.198 -07 000000415 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:20:43.198 -07 000000626 INF: FPGA: Xmit ZDACW 37460\n [Z Motor]
17-03-17 20:20:43.198 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:20:43.208 -07 000000626 INF: FPGA: 'ZDACW 37460' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:20:43.208 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:43.208 -07 000000438 INF: FPGA: Recv ZDACR 37460
17-03-17 20:20:43.218 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:43.218 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:43.218 -07 000000626 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 20:20:43.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:20:43.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:20:43.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:43.388 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:43.388 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:20:43.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:20:43.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:20:43.488 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:43.488 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:20:43.498 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 20:20:43.588 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:20:43.588 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:43.628 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:43.628 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:20:43.638 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:43.638 -07 000000415 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:43.638 -07 000000415 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:20:43.638 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 20:20:44.588 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:44.588 -07 000000551 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:20:44.598 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:44.598 -07 000000415 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:44.618 -07 000000415 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:44.618 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:20:44.618 -07 000000415 INF: Y Motor: Moved to 63.2241 after 1431 ms (table move)
17-03-17 20:20:44.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171481 mm (DAC = 37460)
17-03-17 20:20:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.628 -07 000000476 INF: FPGA: Recv ZSGSRD 35983
17-03-17 20:20:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.628 -07 000000415 INF: FPGA: Recv ZSGSRD 35980
17-03-17 20:20:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.638 -07 000000480 INF: FPGA: Recv ZSGSRD 35980
17-03-17 20:20:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.648 -07 000000431 INF: FPGA: Recv ZSGSRD 35987
17-03-17 20:20:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35992
17-03-17 20:20:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.668 -07 000000626 INF: FPGA: Recv ZSGSRD 35983
17-03-17 20:20:44.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.678 -07 000000480 INF: FPGA: Recv ZSGSRD 35991
17-03-17 20:20:44.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.688 -07 000000438 INF: FPGA: Recv ZSGSRD 35985
17-03-17 20:20:44.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35978
17-03-17 20:20:44.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35982
17-03-17 20:20:44.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:44.718 -07 000000462 INF: FPGA: Recv ZPIEZORD 32044
17-03-17 20:20:44.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -8.7 V.
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35984 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35983 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35978 (-170.6 uncal um), Max = 35992 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35984, posNoise = 8, negNoise = 6
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: After move to -0.171481, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:20:44.728 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:44.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:20:44.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:44.778 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171492201720261. ----------
17-03-17 20:20:44.778 -07 000000610 INF: Cycle	37	Tile	5	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:44.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37283, sync = True, waitForSettling = True)
17-03-17 20:20:44.778 -07 000000610 INF: Z Motor: Moving to -0.170671 mm, started at -0.171492 mm, distance = 0.82 um
17-03-17 20:20:44.778 -07 000000610 INF: FPGA: Xmit ZDACW 37283\n [Z Motor]
17-03-17 20:20:44.778 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:20:44.788 -07 000000610 INF: FPGA: 'ZDACW 37283' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:44.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:44.788 -07 000000431 INF: FPGA: Recv ZDACR 37283
17-03-17 20:20:44.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:20:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35856
17-03-17 20:20:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.968 -07 000000462 INF: FPGA: Recv ZSGSRD 35859
17-03-17 20:20:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:20:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.988 -07 000000476 INF: FPGA: Recv ZSGSRD 35859
17-03-17 20:20:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:44.998 -07 000000626 INF: FPGA: Recv ZSGSRD 35854
17-03-17 20:20:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:45.008 -07 000000438 INF: FPGA: Recv ZSGSRD 35856
17-03-17 20:20:45.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:45.018 -07 000000415 INF: FPGA: Recv ZSGSRD 35859
17-03-17 20:20:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:45.028 -07 000000476 INF: FPGA: Recv ZSGSRD 35851
17-03-17 20:20:45.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:45.038 -07 000000626 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:20:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:45.048 -07 000000462 INF: FPGA: Recv ZPIEZORD 31896
17-03-17 20:20:45.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:45.058 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -8.8 V.
17-03-17 20:20:45.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35856 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35857 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35851 (-169.8 uncal um), Max = 35859 (-169.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:20:45.058 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35856, posNoise = 3, negNoise = 5
17-03-17 20:20:45.058 -07 000000610 INF: Z Motor: After move to -0.170671, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:45.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:20:45.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:45.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:45.058 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:45.058 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:45.058 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:45.058 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:45.058 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:45.058 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:45.058 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:20:45.058 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:45.058 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:45.058 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:45.068 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:20:45.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:45.068 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:20:45.068 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:45.078 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:20:45.078 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:20:45.078 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:20:45.078 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:20:45.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37460 150\n [Camera]
17-03-17 20:20:45.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:20:45.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:45.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:45.688 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:45.688 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:45.688 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:20:45.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:45.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:45.688 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:45.688 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:45.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) start.
17-03-17 20:20:45.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37460 798
17-03-17 20:20:46.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:46.078 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:20:46.078 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:20:46.078 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:46.078 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:20:46.078 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:20:46.078 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:46.078 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:46.078 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:20:46.078 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:46.088 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:20:46.158 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.011254,
17-03-17 20:20:46.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:46.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:46.228 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:46.228 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:46.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) start.
17-03-17 20:20:46.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:46.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:46.238 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:46.238 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:46.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) start.
17-03-17 20:20:46.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:20:46.428 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:46.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37460 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-17 20:20:46.428 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171133
17-03-17 20:20:46.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17113 mm
17-03-17 20:20:46.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:46.428 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:20:46.428 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:20:46.428 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:46.428 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37384, sync = True, waitForSettling = False)
17-03-17 20:20:46.428 -07 000000438 INF: Z Motor: Moving to -0.171133 mm, started at -0.170670 mm, distance = -0.46 um
17-03-17 20:20:46.428 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:20:46.438 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:46.438 -07 000000551 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:46.438 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:46.438 -07 000000551 INF: Y Motor: Moving 1342 steps-17
17-03-17 20:20:46.438 -07 000000438 INF: FPGA: Xmit ZDACW 37384\n [Z Motor]
17-03-17 20:20:46.438 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:20:46.448 -07 000000438 INF: FPGA: 'ZDACW 37384' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:20:46.448 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:46.448 -07 000000626 INF: FPGA: Recv ZDACR 37384
17-03-17 20:20:46.458 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:46.458 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:46.458 -07 000000438 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:20:46.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:20:46.618 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:20:46.618 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:46.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:20:46.618 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:20:46.618 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:46.628 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:46.628 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:46.628 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:20:46.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:20:46.778 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:46.828 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:20:46.828 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:20:46.868 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:46.878 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:20:46.878 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:20:46.878 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:46.878 -07 000000551 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:20:46.878 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.117 mm/sec
17-03-17 20:20:47.828 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:47.828 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:20:47.838 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:47.838 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:47.848 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:47.848 -07 000000551 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:20:47.858 -07 000000551 INF: Y Motor: Moved to 64.0571 after 1423 ms (table move)
17-03-17 20:20:47.858 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171133 mm (DAC = 37384)
17-03-17 20:20:47.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.858 -07 000000626 INF: FPGA: Recv ZSGSRD 35934
17-03-17 20:20:47.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:47.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.868 -07 000000438 INF: FPGA: Recv ZSGSRD 35925
17-03-17 20:20:47.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:47.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.878 -07 000000626 INF: FPGA: Recv ZSGSRD 35931
17-03-17 20:20:47.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35931
17-03-17 20:20:47.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35931
17-03-17 20:20:47.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35936
17-03-17 20:20:47.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35928
17-03-17 20:20:47.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35927
17-03-17 20:20:47.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.938 -07 000000626 INF: FPGA: Recv ZSGSRD 35929
17-03-17 20:20:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:47.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35927
17-03-17 20:20:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:47.958 -07 000000551 INF: FPGA: Recv ZPIEZORD 31984
17-03-17 20:20:47.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -8.7 V.
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35930 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35925 (-170.2 uncal um), Max = 35936 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35930, posNoise = 6, negNoise = 5
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: After move to -0.171133, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 109 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:20:47.968 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:48.018 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:20:48.018 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:48.018 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171145294264606. ----------
17-03-17 20:20:48.018 -07 000000610 INF: Cycle	37	Tile	6	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:48.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37207, sync = True, waitForSettling = True)
17-03-17 20:20:48.018 -07 000000610 INF: Z Motor: Moving to -0.170323 mm, started at -0.171145 mm, distance = 0.82 um
17-03-17 20:20:48.018 -07 000000610 INF: FPGA: Xmit ZDACW 37207\n [Z Motor]
17-03-17 20:20:48.028 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:20:48.028 -07 000000610 INF: FPGA: 'ZDACW 37207' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:20:48.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:48.028 -07 000000626 INF: FPGA: Recv ZDACR 37207
17-03-17 20:20:48.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35806
17-03-17 20:20:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35806
17-03-17 20:20:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.208 -07 000000438 INF: FPGA: Recv ZSGSRD 35804
17-03-17 20:20:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35804
17-03-17 20:20:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35806
17-03-17 20:20:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35808
17-03-17 20:20:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:20:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:48.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.258 -07 000000480 INF: FPGA: Recv ZSGSRD 35799
17-03-17 20:20:48.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35802
17-03-17 20:20:48.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:48.278 -07 000000480 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:20:48.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:48.288 -07 000000551 INF: FPGA: Recv ZPIEZORD 31784
17-03-17 20:20:48.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:48.298 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.9 V.
17-03-17 20:20:48.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35806 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:20:48.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 6, negNoise = 6
17-03-17 20:20:48.298 -07 000000610 INF: Z Motor: After move to -0.170323, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:48.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:20:48.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:48.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:48.298 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:48.298 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:48.298 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:48.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:48.298 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:48.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:48.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:48.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:48.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:48.298 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:48.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:20:48.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:48.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:20:48.308 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:48.318 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:20:48.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:20:48.318 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:20:48.318 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:20:48.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37384 150\n [Camera]
17-03-17 20:20:48.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:20:48.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:48.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:48.938 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:48.938 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:48.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:20:48.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:48.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:48.938 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:48.938 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:48.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:20:49.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37384 798
17-03-17 20:20:49.278 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:49.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:20:49.338 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:20:49.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:49.338 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:20:49.338 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:20:49.338 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:49.338 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:49.338 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:20:49.348 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:49.348 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:20:49.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:49.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:49.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:49.478 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:49.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:20:49.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:49.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:49.478 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:49.478 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:49.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:20:49.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:20:49.668 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:49.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37384 150' command took 2 ms to send, 1336 ms to get response, and 1346 ms overall
17-03-17 20:20:49.668 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170786
17-03-17 20:20:49.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17079 mm
17-03-17 20:20:49.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:49.678 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37308, sync = True, waitForSettling = False)
17-03-17 20:20:49.678 -07 000000501 INF: Z Motor: Moving to -0.170785 mm, started at -0.170342 mm, distance = -0.44 um
17-03-17 20:20:49.678 -07 000000501 INF: FPGA: Xmit ZDACW 37308\n [Z Motor]
17-03-17 20:20:49.678 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:20:49.678 -07 000000478 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:20:49.678 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:20:49.688 -07 000000501 INF: FPGA: 'ZDACW 37308' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:49.688 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:49.688 -07 000000438 INF: FPGA: Recv ZDACR 37308
17-03-17 20:20:49.698 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:49.698 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:49.698 -07 000000501 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 20:20:49.698 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:20:49.708 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:20:49.708 -07 000000478 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:49.708 -07 000000478 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:49.708 -07 000000478 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:20:49.708 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:49.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:20:49.868 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:20:49.868 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:49.868 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:49.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:20:49.868 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:20:49.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:49.878 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:49.878 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:20:49.878 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:20:50.078 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:20:50.078 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:20:50.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:50.128 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:20:50.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:20:50.128 -07 000000478 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:50.128 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:20:50.128 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.210 mm/sec
17-03-17 20:20:51.078 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:51.078 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:20:51.088 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:51.088 -07 000000478 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:51.108 -07 000000478 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:51.108 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:20:51.108 -07 000000478 INF: Y Motor: Moved to 64.8789 after 1429 ms (table move)
17-03-17 20:20:51.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170785 mm (DAC = 37308)
17-03-17 20:20:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.108 -07 000000478 INF: FPGA: Recv ZSGSRD 35871
17-03-17 20:20:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35868
17-03-17 20:20:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.128 -07 000000478 INF: FPGA: Recv ZSGSRD 35876
17-03-17 20:20:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35886
17-03-17 20:20:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.148 -07 000000626 INF: FPGA: Recv ZSGSRD 35877
17-03-17 20:20:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:20:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.168 -07 000000478 INF: FPGA: Recv ZSGSRD 35874
17-03-17 20:20:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.178 -07 000000541 INF: FPGA: Recv ZSGSRD 35868
17-03-17 20:20:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35878
17-03-17 20:20:51.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35882
17-03-17 20:20:51.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:20:51.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:51.218 -07 000000541 INF: FPGA: Recv ZPIEZORD 31943
17-03-17 20:20:51.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.7 V.
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35875 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35875 (-169.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35868 (-169.9 uncal um), Max = 35886 (-170.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35875, posNoise = 11, negNoise = 7
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: After move to -0.170785, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 115 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:20:51.228 -07 000000610 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:51.268 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:20:51.268 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:51.268 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.170791962596809. ----------
17-03-17 20:20:51.268 -07 000000610 INF: Cycle	37	Tile	7	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:51.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37132, sync = True, waitForSettling = True)
17-03-17 20:20:51.268 -07 000000610 INF: Z Motor: Moving to -0.169979 mm, started at -0.170792 mm, distance = 0.81 um
17-03-17 20:20:51.268 -07 000000610 INF: FPGA: Xmit ZDACW 37132\n [Z Motor]
17-03-17 20:20:51.278 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:20:51.278 -07 000000610 INF: FPGA: 'ZDACW 37132' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 20:20:51.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:51.278 -07 000000433 INF: FPGA: Recv ZDACR 37132
17-03-17 20:20:51.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:51.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:51.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.438 -07 000000541 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:20:51.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:51.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35750
17-03-17 20:20:51.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.458 -07 000000551 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:20:51.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35755
17-03-17 20:20:51.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35742
17-03-17 20:20:51.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.488 -07 000000551 INF: FPGA: Recv ZSGSRD 35746
17-03-17 20:20:51.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.498 -07 000000541 INF: FPGA: Recv ZSGSRD 35750
17-03-17 20:20:51.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.518 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.012614,
17-03-17 20:20:51.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:20:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:20:51.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.548 -07 000000438 INF: FPGA: Recv ZSGSRD 35751
17-03-17 20:20:51.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:20:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:51.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35751
17-03-17 20:20:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:51.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:51.588 -07 000000438 INF: FPGA: Recv ZPIEZORD 31732
17-03-17 20:20:51.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:20:51.598 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.9 V.
17-03-17 20:20:51.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35751 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35751 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35742 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:20:51.598 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35751, posNoise = 4, negNoise = 9
17-03-17 20:20:51.598 -07 000000610 INF: Z Motor: After move to -0.169979, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:51.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 323 ms)
17-03-17 20:20:51.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:51.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:51.598 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:51.598 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:51.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:51.598 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:51.598 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:51.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:51.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 20:20:51.598 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:51.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:51.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:51.608 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:20:51.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:51.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:51.608 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:51.618 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:20:51.618 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:20:51.618 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:20:51.618 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:20:51.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37308 150\n [Camera]
17-03-17 20:20:51.778 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:51.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:51.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:20:52.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:52.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:52.238 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:52.238 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:52.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:20:52.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:52.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:52.238 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:52.238 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:52.238 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:20:52.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37308 798
17-03-17 20:20:52.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:52.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:20:52.618 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:20:52.618 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:52.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:20:52.618 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:20:52.618 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:52.628 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:20:52.628 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:52.628 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:20:52.628 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:20:52.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:52.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:52.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:52.778 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:52.778 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:20:52.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:52.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:52.778 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:52.778 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:52.778 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:20:52.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:20:52.968 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:52.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37308 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:20:52.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:20:52.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169995360291231. ------
17-03-17 20:20:52.978 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:52.978 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17643 mm
17-03-17 20:20:52.978 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:52.978 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:52.978 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:20:52.978 -07 000000433 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:20:52.978 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38541, sync = True, waitForSettling = False)
17-03-17 20:20:52.978 -07 000000476 INF: Z Motor: Moving to -0.176429 mm, started at -0.169995 mm, distance = -6.43 um
17-03-17 20:20:52.988 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:52.988 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:20:52.998 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:52.998 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:20:53.008 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:20:53.008 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:53.008 -07 000000433 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:53.008 -07 000000433 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:20:53.008 -07 000000476 INF: FPGA: Xmit ZDACW 38541\n [Z Motor]
17-03-17 20:20:53.008 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:20:53.018 -07 000000476 INF: FPGA: 'ZDACW 38541' command took 1 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 20:20:53.018 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:53.018 -07 000000478 INF: FPGA: Recv ZDACR 38541
17-03-17 20:20:53.028 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:53.028 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:53.028 -07 000000476 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:20:53.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:20:53.168 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:20:53.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:53.168 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:20:53.168 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:20:53.168 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:53.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:53.168 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:20:53.168 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:20:53.178 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:20:53.188 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:20:53.188 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:20:53.398 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:20:53.398 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:53.438 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:53.438 -07 000000415 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:20:53.448 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:53.448 -07 000000433 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:53.448 -07 000000433 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:20:53.448 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:20:54.398 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:54.398 -07 000000415 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:20:54.408 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:54.408 -07 000000433 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:54.428 -07 000000433 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:54.428 -07 000000433 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:20:54.428 -07 000000433 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 20:20:54.428 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176429 mm (DAC = 38541)
17-03-17 20:20:54.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.438 -07 000000415 INF: FPGA: Recv ZSGSRD 36754
17-03-17 20:20:54.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:20:54.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.438 -07 000000433 INF: FPGA: Recv ZSGSRD 36750
17-03-17 20:20:54.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:20:54.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.448 -07 000000501 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:20:54.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:20:54.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.468 -07 000000415 INF: FPGA: Recv ZSGSRD 36749
17-03-17 20:20:54.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.478 -07 000000433 INF: FPGA: Recv ZSGSRD 36755
17-03-17 20:20:54.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.488 -07 000000501 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:20:54.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.498 -07 000000433 INF: FPGA: Recv ZSGSRD 36750
17-03-17 20:20:54.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.508 -07 000000415 INF: FPGA: Recv ZSGSRD 36747
17-03-17 20:20:54.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:54.518 -07 000000501 INF: FPGA: Recv ZSGSRD 36752
17-03-17 20:20:54.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.528 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:54.528 -07 000000438 INF: FPGA: Recv ZPIEZORD 33094
17-03-17 20:20:54.538 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.1 V.
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36752 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36747 (-175.5 uncal um), Max = 36759 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36752, posNoise = 7, negNoise = 5
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: After move to -0.176429, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:20:54.538 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:54.588 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:20:54.588 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:54.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:54.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:54.588 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:54.588 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:54.588 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:20:54.588 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:54.588 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:54.588 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:20:54.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:54.598 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:20:54.608 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:20:54.608 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:20:54.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:20:54.658 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:20:54.858 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:20:54.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:20:54.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:20:54.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 20:20:54.898 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:20:54.898 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:20:54.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:20:54.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:20:54.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:54.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:20:54.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:20:54.998 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:20:54.998 -07 000000478 INF: Autofocus start
17-03-17 20:20:54.998 -07 000000478 INF: MeasureProfile start
17-03-17 20:20:54.998 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:20:55.008 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:55.008 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:20:55.008 -07 000000478 INF: MeasureProfile done
17-03-17 20:20:55.008 -07 000000478 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:20:55.008 -07 000000478 INF: Autofocus finished
17-03-17 20:20:55.208 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:20:55.208 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:20:55.208 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176425996645134. ----------
17-03-17 20:20:55.208 -07 000000610 INF: Cycle	37	Tile	8	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:55.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37110, sync = True, waitForSettling = True)
17-03-17 20:20:55.218 -07 000000610 INF: Z Motor: Moving to -0.169879 mm, started at -0.176426 mm, distance = 6.55 um
17-03-17 20:20:55.218 -07 000000610 INF: FPGA: Xmit ZDACW 37110\n [Z Motor]
17-03-17 20:20:55.218 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:20:55.228 -07 000000610 INF: FPGA: 'ZDACW 37110' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:55.228 -07 000000541 INF: FPGA: Recv ZDACR 37110
17-03-17 20:20:55.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35737
17-03-17 20:20:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35738
17-03-17 20:20:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:20:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35727
17-03-17 20:20:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35735
17-03-17 20:20:55.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.438 -07 000000478 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:20:55.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.448 -07 000000541 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:20:55.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35737
17-03-17 20:20:55.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35736
17-03-17 20:20:55.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:55.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35737
17-03-17 20:20:55.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:55.488 -07 000000438 INF: FPGA: Recv ZPIEZORD 31714
17-03-17 20:20:55.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:55.498 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -8.9 V.
17-03-17 20:20:55.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35735 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35736 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35727 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:20:55.498 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35735, posNoise = 3, negNoise = 8
17-03-17 20:20:55.498 -07 000000610 INF: Z Motor: After move to -0.169879, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:55.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:20:55.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:55.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:55.498 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:55.498 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:55.498 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:55.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:55.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:55.498 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:55.498 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:55.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:55.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:55.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:55.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:55.508 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:55.508 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:20:55.508 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:55.518 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:20:55.518 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:55.518 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:20:55.518 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:55.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37287 150\n [Camera]
17-03-17 20:20:55.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:20:56.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:56.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:56.138 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:56.138 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:56.138 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:20:56.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:56.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:56.138 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:56.138 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:56.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:20:56.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37287 798
17-03-17 20:20:56.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:20:56.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:20:56.518 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:20:56.518 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:56.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:20:56.518 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:20:56.518 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:56.518 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:56.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:20:56.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:56.528 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:20:56.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:20:56.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:20:56.678 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:56.678 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:56.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:20:56.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:20:56.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:20:56.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:56.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:56.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:20:56.768 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:20:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:20:56.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:20:56.868 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:20:56.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37287 150' command took 2 ms to send, 1338 ms to get response, and 1347 ms overall
17-03-17 20:20:56.878 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170287
17-03-17 20:20:56.878 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17029 mm
17-03-17 20:20:56.878 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:20:56.878 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:20:56.878 -07 000000623 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:20:56.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:56.878 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37199, sync = True, waitForSettling = False)
17-03-17 20:20:56.878 -07 000000438 INF: Z Motor: Moving to -0.170286 mm, started at -0.169893 mm, distance = -0.39 um
17-03-17 20:20:56.878 -07 000000480 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:20:56.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:20:56.888 -07 000000438 INF: FPGA: Xmit ZDACW 37199\n [Z Motor]
17-03-17 20:20:56.888 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:56.888 -07 000000623 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:20:56.888 -07 000000623 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:20:56.888 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:20:56.898 -07 000000438 INF: FPGA: 'ZDACW 37199' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:20:56.908 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:20:56.908 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.030322,
17-03-17 20:20:56.918 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:56.918 -07 000000551 INF: FPGA: Recv ZDACR 37199
17-03-17 20:20:56.928 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:20:56.928 -07 000000438 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:20:57.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:20:57.068 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:20:57.068 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:57.068 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:20:57.068 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:20:57.068 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:57.078 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:20:57.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:20:57.078 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:20:57.078 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:20:57.278 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:20:57.278 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:20:57.318 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:57.318 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:20:57.328 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:20:57.328 -07 000000623 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:57.328 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:20:57.328 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 20:20:58.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:20:58.278 -07 000000438 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:20:58.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:58.288 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:20:58.308 -07 000000623 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:20:58.308 -07 000000623 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:20:58.308 -07 000000623 INF: Y Motor: Moved to 66.5396 after 1429 ms (table move)
17-03-17 20:20:58.308 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170286 mm (DAC = 37199)
17-03-17 20:20:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:20:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:20:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.318 -07 000000478 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:20:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:20:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35802
17-03-17 20:20:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.348 -07 000000478 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:20:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.358 -07 000000478 INF: FPGA: Recv ZSGSRD 35798
17-03-17 20:20:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.368 -07 000000433 INF: FPGA: Recv ZSGSRD 35804
17-03-17 20:20:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:20:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:20:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.388 -07 000000433 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:20:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.398 -07 000000478 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:20:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:58.408 -07 000000478 INF: FPGA: Recv ZPIEZORD 31800
17-03-17 20:20:58.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -8.8 V.
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35797 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35791 (-169.4 uncal um), Max = 35804 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35797, posNoise = 7, negNoise = 6
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: After move to -0.170286, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 104 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:20:58.418 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:20:58.468 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 20:20:58.468 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:20:58.468 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.170290874049752. ----------
17-03-17 20:20:58.468 -07 000000610 INF: Cycle	37	Tile	9	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:20:58.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37022, sync = True, waitForSettling = True)
17-03-17 20:20:58.468 -07 000000610 INF: Z Motor: Moving to -0.169476 mm, started at -0.170291 mm, distance = 0.82 um
17-03-17 20:20:58.468 -07 000000610 INF: FPGA: Xmit ZDACW 37022\n [Z Motor]
17-03-17 20:20:58.468 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:20:58.478 -07 000000610 INF: FPGA: 'ZDACW 37022' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:20:58.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:20:58.478 -07 000000433 INF: FPGA: Recv ZDACR 37022
17-03-17 20:20:58.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:20:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:20:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:20:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:20:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.658 -07 000000478 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:20:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.668 -07 000000433 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:20:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.678 -07 000000478 INF: FPGA: Recv ZSGSRD 35673
17-03-17 20:20:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.688 -07 000000478 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:20:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.698 -07 000000478 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:20:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.708 -07 000000433 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:20:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:20:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:20:58.728 -07 000000433 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:20:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:20:58.738 -07 000000478 INF: FPGA: Recv ZPIEZORD 31644
17-03-17 20:20:58.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:20:58.748 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -8.9 V.
17-03-17 20:20:58.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35672 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35671 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35677 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:20:58.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35672, posNoise = 5, negNoise = 4
17-03-17 20:20:58.748 -07 000000610 INF: Z Motor: After move to -0.169476, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:20:58.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:20:58.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:20:58.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:20:58.748 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:20:58.748 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:20:58.748 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:20:58.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:20:58.748 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:20:58.748 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:20:58.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:20:58.748 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:20:58.748 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:20:58.748 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:20:58.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:20:58.758 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:20:58.758 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:20:58.758 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:20:58.768 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:20:58.768 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:58.768 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:20:58.768 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:20:58.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37199 150\n [Camera]
17-03-17 20:20:58.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:20:59.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:20:59.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:20:59.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:59.388 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:59.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:20:59.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:20:59.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:20:59.388 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:59.388 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:59.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:20:59.578 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37199 800
17-03-17 20:20:59.728 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:20:59.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:20:59.768 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:20:59.768 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:59.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:20:59.768 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:20:59.768 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:20:59.768 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:59.768 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:20:59.768 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:20:59.778 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:20:59.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1149
17-03-17 20:20:59.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1149
17-03-17 20:20:59.928 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:20:59.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:20:59.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:20:59.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1149
17-03-17 20:20:59.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1149
17-03-17 20:20:59.938 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:20:59.938 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:20:59.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:21:00.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:00.118 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:00.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37199 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:21:00.118 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170313
17-03-17 20:21:00.118 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17031 mm
17-03-17 20:21:00.118 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:00.128 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:21:00.128 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:21:00.128 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:00.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37205, sync = True, waitForSettling = False)
17-03-17 20:21:00.128 -07 000000431 INF: Z Motor: Moving to -0.170314 mm, started at -0.169488 mm, distance = -0.83 um
17-03-17 20:21:00.128 -07 000000438 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:21:00.138 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:00.138 -07 000000501 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:00.138 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:00.138 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:21:00.138 -07 000000431 INF: FPGA: Xmit ZDACW 37205\n [Z Motor]
17-03-17 20:21:00.138 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:21:00.148 -07 000000431 INF: FPGA: 'ZDACW 37205' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:21:00.148 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:00.158 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:00.158 -07 000000462 INF: FPGA: Recv ZDACR 37205
17-03-17 20:21:00.168 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:00.168 -07 000000431 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:21:00.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:21:00.318 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:21:00.318 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:00.318 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:21:00.318 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:21:00.318 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:00.328 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:00.328 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:00.328 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:21:00.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:21:00.518 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:21:00.518 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:21:00.558 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:00.558 -07 000000541 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:21:00.568 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:00.568 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:00.568 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:21:00.568 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 20:21:01.518 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:01.518 -07 000000551 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:21:01.528 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:01.528 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:01.548 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:01.548 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:01.548 -07 000000501 INF: Y Motor: Moved to 67.3721 after 1418 ms (table move)
17-03-17 20:21:01.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170314 mm (DAC = 37205)
17-03-17 20:21:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.548 -07 000000501 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:21:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:21:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35800
17-03-17 20:21:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.578 -07 000000478 INF: FPGA: Recv ZSGSRD 35797
17-03-17 20:21:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35803
17-03-17 20:21:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.598 -07 000000626 INF: FPGA: Recv ZSGSRD 35805
17-03-17 20:21:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.608 -07 000000462 INF: FPGA: Recv ZSGSRD 35800
17-03-17 20:21:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.618 -07 000000433 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:21:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.628 -07 000000551 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:21:01.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:21:01.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:01.648 -07 000000541 INF: FPGA: Recv ZPIEZORD 31852
17-03-17 20:21:01.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35799 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35793 (-169.4 uncal um), Max = 35805 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35799, posNoise = 6, negNoise = 6
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: After move to -0.170314, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 105 ms (allowed 150 ms), total time = 1525 ms
17-03-17 20:21:01.658 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:01.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:21:01.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:01.708 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.170303722474035. ----------
17-03-17 20:21:01.708 -07 000000610 INF: Cycle	37	Tile	10	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:01.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37028, sync = True, waitForSettling = True)
17-03-17 20:21:01.708 -07 000000610 INF: Z Motor: Moving to -0.169503 mm, started at -0.170304 mm, distance = 0.80 um
17-03-17 20:21:01.708 -07 000000610 INF: FPGA: Xmit ZDACW 37028\n [Z Motor]
17-03-17 20:21:01.708 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:21:01.718 -07 000000610 INF: FPGA: 'ZDACW 37028' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:01.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:01.718 -07 000000431 INF: FPGA: Recv ZDACR 37028
17-03-17 20:21:01.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:01.768 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:01.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.878 -07 000000551 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:21:01.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.888 -07 000000431 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:21:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.898 -07 000000551 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:21:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.908 -07 000000433 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:21:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:21:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:21:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.938 -07 000000626 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:21:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.948 -07 000000626 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:21:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.958 -07 000000626 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:21:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:01.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:21:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:01.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:01.988 -07 000000626 INF: FPGA: Recv ZPIEZORD 31694
17-03-17 20:21:01.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:01.998 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.8 V.
17-03-17 20:21:01.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35675 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35674 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35669 (-168.6 uncal um), Max = 35678 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:01.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35675, posNoise = 3, negNoise = 6
17-03-17 20:21:01.998 -07 000000610 INF: Z Motor: After move to -0.169503, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:01.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 20:21:01.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:01.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:01.998 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:01.998 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:01.998 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:01.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:02.008 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:21:02.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:02.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:02.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:21:02.018 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:21:02.018 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:21:02.018 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:02.038 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:21:02.038 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:21:02.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37205 150\n [Camera]
17-03-17 20:21:02.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:02.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:02.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:02.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:02.738 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.041198,
17-03-17 20:21:02.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:02.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:02.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:02.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:21:03.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:21:03.118 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:21:03.118 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:03.118 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:21:03.118 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:21:03.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:03.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:03.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:21:03.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:21:03.498 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:21:03.498 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:03.508 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:03.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:21:03.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37205 798
17-03-17 20:21:03.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:03.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:03.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:03.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:03.528 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:03.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37205 150' command took 2 ms to send, 1480 ms to get response, and 1488 ms overall
17-03-17 20:21:03.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:03.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:03.528 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:03.528 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:03.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 20:21:03.628 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169945
17-03-17 20:21:03.628 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16995 mm
17-03-17 20:21:03.628 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:03.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:21:03.908 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:21:03.908 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:03.908 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:21:03.908 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:21:03.938 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:03.938 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:03.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 20:21:04.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:21:04.318 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:21:04.318 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:04.318 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:04.328 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:21:04.338 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:21:04.338 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:21:04.338 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:04.488 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:21:04.488 -07 000000415 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 152 ms overall
17-03-17 20:21:04.488 -07 000000415 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:04.488 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:04.488 -07 000000415 INF: Y Motor: Moving 1345 steps-22
17-03-17 20:21:04.498 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:04.498 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37125, sync = True, waitForSettling = False)
17-03-17 20:21:04.498 -07 000000623 INF: Z Motor: Moving to -0.169947 mm, started at -0.169507 mm, distance = -0.44 um
17-03-17 20:21:04.508 -07 000000623 INF: FPGA: Xmit ZDACW 37125\n [Z Motor]
17-03-17 20:21:04.508 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:21:04.518 -07 000000623 INF: FPGA: 'ZDACW 37125' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:21:04.538 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:04.538 -07 000000541 INF: FPGA: Recv ZDACR 37125
17-03-17 20:21:04.548 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:04.548 -07 000000623 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:21:04.868 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:21:04.868 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:21:04.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:04.908 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:21:04.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:04.918 -07 000000415 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:04.918 -07 000000415 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:21:04.918 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-17 20:21:05.868 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:05.868 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:21:05.878 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:05.878 -07 000000415 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:05.898 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:05.898 -07 000000415 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:05.898 -07 000000415 INF: Y Motor: Moved to 68.2051 after 1554 ms (table move)
17-03-17 20:21:05.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169947 mm (DAC = 37125)
17-03-17 20:21:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35755
17-03-17 20:21:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35744
17-03-17 20:21:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.918 -07 000000478 INF: FPGA: Recv ZSGSRD 35746
17-03-17 20:21:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35735
17-03-17 20:21:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35744
17-03-17 20:21:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 20:21:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.958 -07 000000462 INF: FPGA: Recv ZSGSRD 35746
17-03-17 20:21:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.968 -07 000000476 INF: FPGA: Recv ZSGSRD 35745
17-03-17 20:21:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35746
17-03-17 20:21:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:05.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35752
17-03-17 20:21:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:05.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:05.998 -07 000000415 INF: FPGA: Recv ZPIEZORD 31803
17-03-17 20:21:06.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.665 V. Piezo Error = -8.7 V.
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35745 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35746 (-169.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35735 (-169.0 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35745, posNoise = 10, negNoise = 10
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: After move to -0.169947, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: Settle wait time = 1401 ms, measure time = 108 ms (allowed 150 ms), total time = 1509 ms
17-03-17 20:21:06.008 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:06.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2427 ms
17-03-17 20:21:06.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:06.058 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.16995681501838. ----------
17-03-17 20:21:06.058 -07 000000610 INF: Cycle	37	Tile	11	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:06.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36948, sync = True, waitForSettling = True)
17-03-17 20:21:06.058 -07 000000610 INF: Z Motor: Moving to -0.169137 mm, started at -0.169957 mm, distance = 0.82 um
17-03-17 20:21:06.058 -07 000000610 INF: FPGA: Xmit ZDACW 36948\n [Z Motor]
17-03-17 20:21:06.058 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:21:06.068 -07 000000610 INF: FPGA: 'ZDACW 36948' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:06.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:06.068 -07 000000551 INF: FPGA: Recv ZDACR 36948
17-03-17 20:21:06.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:06.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:06.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:06.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:21:06.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:06.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:06.238 -07 000000476 INF: FPGA: Recv ZSGSRD 35621
17-03-17 20:21:06.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:06.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:21:07.238 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-17 20:21:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:07.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35624
17-03-17 20:21:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35620
17-03-17 20:21:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35621
17-03-17 20:21:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:21:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35623
17-03-17 20:21:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:21:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:07.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35616
17-03-17 20:21:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:07.308 -07 000000476 INF: FPGA: Recv ZPIEZORD 31602
17-03-17 20:21:07.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:07.318 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -8.9 V.
17-03-17 20:21:07.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35619 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35618 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35615 (-168.2 uncal um), Max = 35624 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:21:07.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35619, posNoise = 5, negNoise = 4
17-03-17 20:21:07.318 -07 000000610 INF: Z Motor: After move to -0.169137, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:07.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 1256 ms)
17-03-17 20:21:07.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:07.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:07.318 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:07.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:07.318 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:07.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:07.318 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:07.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:21:07.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:07.318 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:07.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:07.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:07.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:07.328 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:07.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:07.328 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:07.328 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:21:07.328 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:21:07.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:21:07.338 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:21:07.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37125 150\n [Camera]
17-03-17 20:21:07.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:07.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:07.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:07.948 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:07.948 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:07.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:07.958 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:07.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:07.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:21:07.958 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:07.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:21:08.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37125 798
17-03-17 20:21:08.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:08.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:21:08.348 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:21:08.348 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:08.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:08.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:21:08.358 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:21:08.358 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:21:08.358 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:08.358 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:08.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:21:08.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:08.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:08.488 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:08.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:08.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:08.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:08.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:08.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:21:08.498 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:08.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 20:21:08.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:08.688 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:08.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37125 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-17 20:21:08.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:21:08.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169147364288518. ------
17-03-17 20:21:08.798 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:08.798 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17568 mm
17-03-17 20:21:08.798 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:08.798 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38378, sync = True, waitForSettling = False)
17-03-17 20:21:08.798 -07 000000551 INF: Z Motor: Moving to -0.175683 mm, started at -0.169147 mm, distance = -6.54 um
17-03-17 20:21:08.798 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:21:08.798 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:21:08.808 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:08.818 -07 000000551 INF: FPGA: Xmit ZDACW 38378\n [Z Motor]
17-03-17 20:21:08.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:21:08.888 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:21:08.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:08.898 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:21:08.898 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:08.898 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:21:08.898 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:21:08.898 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:08.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:08.908 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:08.908 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:21:08.908 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 101 ms to get response, and 107 ms overall
17-03-17 20:21:08.908 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:21:08.908 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:21:08.908 -07 000000551 INF: FPGA: 'ZDACW 38378' command took 0 ms to send, 81 ms to get response, and 104 ms overall
17-03-17 20:21:08.908 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:08.908 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 91 ms to get response, and 103 ms overall
17-03-17 20:21:08.908 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:08.908 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:08.908 -07 000000501 INF: Y Motor: Moving 1340 steps-15
17-03-17 20:21:08.908 -07 000000462 INF: FPGA: Recv ZDACR 38378
17-03-17 20:21:08.918 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:08.918 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:21:08.918 -07 000000551 INF: Z Motor: MoveAbsStepped took 112 ms (did NOT wait for settling yet))
17-03-17 20:21:08.928 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:09.118 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:21:09.118 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 20:21:09.308 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:21:09.308 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 20:21:09.338 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:09.338 -07 000000476 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:21:09.348 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:09.348 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:09.348 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:21:09.348 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 20:21:09.878 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.027603,
17-03-17 20:21:10.298 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:10.298 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:21:10.308 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:10.308 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:10.328 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:10.328 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:10.328 -07 000000501 INF: Y Motor: Moved to 69.0273 after 1525 ms (table move)
17-03-17 20:21:10.328 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175683 mm (DAC = 38378)
17-03-17 20:21:10.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36637
17-03-17 20:21:10.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:10.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.338 -07 000000551 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:21:10.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:21:10.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36639
17-03-17 20:21:10.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:21:10.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36640
17-03-17 20:21:10.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36650
17-03-17 20:21:10.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.398 -07 000000501 INF: FPGA: Recv ZSGSRD 36638
17-03-17 20:21:10.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.408 -07 000000462 INF: FPGA: Recv ZSGSRD 36640
17-03-17 20:21:10.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:10.418 -07 000000433 INF: FPGA: Recv ZSGSRD 36635
17-03-17 20:21:10.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.428 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:10.428 -07 000000462 INF: FPGA: Recv ZPIEZORD 32984
17-03-17 20:21:10.438 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.1 V.
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36638 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36650 (-174.9 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 13, negNoise = 6
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: After move to -0.175683, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: Settle wait time = 1529 ms, measure time = 103 ms (allowed 150 ms), total time = 1632 ms
17-03-17 20:21:10.438 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:10.488 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1685 ms
17-03-17 20:21:10.488 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:10.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:10.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:10.488 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:10.488 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:21:10.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:10.488 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:10.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:21:10.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:21:10.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:10.498 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:21:10.498 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:21:10.498 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:21:10.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:21:10.548 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:21:10.748 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:21:10.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:21:10.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:21:10.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:21:10.788 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:21:10.788 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:21:10.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:21:10.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:21:10.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:10.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:21:10.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:21:10.888 -07 000000433 INF: Autofocus start
17-03-17 20:21:10.888 -07 000000433 INF: MeasureProfile start
17-03-17 20:21:10.888 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:10.888 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:10.898 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:10.898 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:21:10.898 -07 000000433 INF: MeasureProfile done
17-03-17 20:21:10.898 -07 000000433 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:21:10.898 -07 000000433 INF: Autofocus finished
17-03-17 20:21:11.098 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:21:11.098 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:21:11.098 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175687212248831. ----------
17-03-17 20:21:11.098 -07 000000610 INF: Cycle	37	Tile	12	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:11.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36858, sync = True, waitForSettling = True)
17-03-17 20:21:11.108 -07 000000610 INF: Z Motor: Moving to -0.168725 mm, started at -0.175687 mm, distance = 6.96 um
17-03-17 20:21:11.108 -07 000000610 INF: FPGA: Xmit ZDACW 36858\n [Z Motor]
17-03-17 20:21:11.108 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:21:11.118 -07 000000610 INF: FPGA: 'ZDACW 36858' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:11.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:11.118 -07 000000551 INF: FPGA: Recv ZDACR 36858
17-03-17 20:21:11.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:11.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35556
17-03-17 20:21:11.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:11.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35552
17-03-17 20:21:11.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35558
17-03-17 20:21:11.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35556
17-03-17 20:21:11.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35554
17-03-17 20:21:11.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35547
17-03-17 20:21:11.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.338 -07 000000438 INF: FPGA: Recv ZSGSRD 35556
17-03-17 20:21:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.348 -07 000000476 INF: FPGA: Recv ZSGSRD 35561
17-03-17 20:21:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.358 -07 000000462 INF: FPGA: Recv ZSGSRD 35554
17-03-17 20:21:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:11.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35555
17-03-17 20:21:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:11.378 -07 000000433 INF: FPGA: Recv ZPIEZORD 31521
17-03-17 20:21:11.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:11.388 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -8.9 V.
17-03-17 20:21:11.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35556 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35547 (-167.8 uncal um), Max = 35561 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:11.388 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 6, negNoise = 8
17-03-17 20:21:11.388 -07 000000610 INF: Z Motor: After move to -0.168725, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:11.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:21:11.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:11.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:11.388 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:11.388 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:11.388 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:11.388 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:11.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:11.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:11.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:11.388 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:11.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:11.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:11.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:11.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:11.398 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:21:11.398 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:11.408 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:21:11.408 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:21:11.408 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:21:11.408 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:21:11.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37035 150\n [Camera]
17-03-17 20:21:11.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:11.778 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:11.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:12.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:12.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:12.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:12.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:12.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:12.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:12.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:12.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) start.
17-03-17 20:21:12.028 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:12.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:21:12.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37035 798
17-03-17 20:21:12.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:12.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:21:12.428 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:21:12.428 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:12.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:21:12.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:21:12.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:12.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:12.428 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:21:12.428 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:12.438 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:21:12.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:12.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:12.558 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:12.568 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:12.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) start.
17-03-17 20:21:12.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:12.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:12.568 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:12.568 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:12.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) start.
17-03-17 20:21:12.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:12.758 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:12.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37035 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-17 20:21:12.758 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169099
17-03-17 20:21:12.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16910 mm
17-03-17 20:21:12.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:12.758 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:21:12.758 -07 000000433 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:21:12.758 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:12.758 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 36940, sync = True, waitForSettling = False)
17-03-17 20:21:12.758 -07 000000551 INF: Z Motor: Moving to -0.169100 mm, started at -0.168736 mm, distance = -0.36 um
17-03-17 20:21:12.758 -07 000000626 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:21:12.768 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:12.768 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:12.768 -07 000000551 INF: FPGA: Xmit ZDACW 36940\n [Z Motor]
17-03-17 20:21:12.768 -07 000000433 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:12.768 -07 000000433 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:21:12.768 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:21:12.778 -07 000000551 INF: FPGA: 'ZDACW 36940' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:21:12.778 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:12.778 -07 000000626 INF: FPGA: Recv ZDACR 36940
17-03-17 20:21:12.788 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:12.788 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:12.788 -07 000000551 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:21:12.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:21:12.958 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:21:12.958 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:12.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:12.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:21:12.968 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:21:12.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:12.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:12.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:21:12.968 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:21:13.158 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:21:13.158 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:21:13.198 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:13.198 -07 000000551 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:21:13.208 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:13.208 -07 000000433 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:13.208 -07 000000433 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:21:13.208 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.151 mm/sec
17-03-17 20:21:14.158 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:14.158 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:21:14.168 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.168 -07 000000433 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:14.188 -07 000000433 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:14.188 -07 000000433 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:14.188 -07 000000433 INF: Y Motor: Moved to 69.8638 after 1426 ms (table move)
17-03-17 20:21:14.188 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169100 mm (DAC = 36940)
17-03-17 20:21:14.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:21:14.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:14.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:21:14.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:21:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:21:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.228 -07 000000501 INF: FPGA: Recv ZSGSRD 35618
17-03-17 20:21:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35611
17-03-17 20:21:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.248 -07 000000501 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:21:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35618
17-03-17 20:21:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:21:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35616
17-03-17 20:21:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:14.288 -07 000000551 INF: FPGA: Recv ZPIEZORD 31623
17-03-17 20:21:14.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.8 V.
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35615 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35610 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35615, posNoise = 4, negNoise = 5
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: After move to -0.169100, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:21:14.298 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:14.348 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:21:14.348 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:14.348 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.169121667439951. ----------
17-03-17 20:21:14.348 -07 000000610 INF: Cycle	37	Tile	13	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:14.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36763, sync = True, waitForSettling = True)
17-03-17 20:21:14.348 -07 000000610 INF: Z Motor: Moving to -0.168290 mm, started at -0.169122 mm, distance = 0.83 um
17-03-17 20:21:14.348 -07 000000610 INF: FPGA: Xmit ZDACW 36763\n [Z Motor]
17-03-17 20:21:14.348 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:21:14.358 -07 000000610 INF: FPGA: 'ZDACW 36763' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:14.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:14.358 -07 000000501 INF: FPGA: Recv ZDACR 36763
17-03-17 20:21:14.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:14.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.518 -07 000000462 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:21:14.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.528 -07 000000462 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:21:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.538 -07 000000462 INF: FPGA: Recv ZSGSRD 35492
17-03-17 20:21:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.548 -07 000000551 INF: FPGA: Recv ZSGSRD 35489
17-03-17 20:21:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.558 -07 000000433 INF: FPGA: Recv ZSGSRD 35484
17-03-17 20:21:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35482
17-03-17 20:21:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35487
17-03-17 20:21:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35487
17-03-17 20:21:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35490
17-03-17 20:21:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:14.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35490
17-03-17 20:21:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:14.618 -07 000000433 INF: FPGA: Recv ZPIEZORD 31454
17-03-17 20:21:14.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:14.628 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -8.9 V.
17-03-17 20:21:14.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35488 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35489 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35482 (-167.4 uncal um), Max = 35492 (-167.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:14.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35488, posNoise = 4, negNoise = 6
17-03-17 20:21:14.628 -07 000000610 INF: Z Motor: After move to -0.168290, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:14.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:21:14.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:14.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:14.628 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:14.628 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:14.628 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:14.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:14.628 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:14.628 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:14.628 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:14.628 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:14.628 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:14.628 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:14.638 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:21:14.638 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:14.638 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:14.638 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:14.648 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:21:14.648 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:21:14.648 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:21:14.648 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:21:14.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36940 150\n [Camera]
17-03-17 20:21:14.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:15.238 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.024884,
17-03-17 20:21:15.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:15.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:15.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:15.268 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:15.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:21:15.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:15.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:15.268 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:15.268 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:15.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:21:15.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36940 798
17-03-17 20:21:15.608 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:15.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:21:15.638 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:21:15.638 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:15.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:21:15.638 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:21:15.638 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:15.648 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:15.648 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:15.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:21:15.658 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:21:15.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:15.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:15.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:15.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:15.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:21:15.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:15.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:15.808 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:15.808 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:15.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:21:15.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:15.998 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:15.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36940 150' command took 2 ms to send, 1343 ms to get response, and 1347 ms overall
17-03-17 20:21:15.998 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168663
17-03-17 20:21:15.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16866 mm
17-03-17 20:21:15.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:15.998 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:21:15.998 -07 000000541 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:21:15.998 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = False)
17-03-17 20:21:15.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:15.998 -07 000000462 INF: Z Motor: Moving to -0.168666 mm, started at -0.168306 mm, distance = -0.36 um
17-03-17 20:21:16.008 -07 000000462 INF: FPGA: Xmit ZDACW 36845\n [Z Motor]
17-03-17 20:21:16.008 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:21:16.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:21:16.008 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:16.008 -07 000000541 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:16.008 -07 000000541 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:21:16.008 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:21:16.018 -07 000000462 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:21:16.018 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:16.018 -07 000000415 INF: FPGA: Recv ZDACR 36845
17-03-17 20:21:16.028 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:16.028 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:16.028 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:21:16.198 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:21:16.198 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:21:16.198 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:16.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:21:16.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:21:16.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:16.208 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:16.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:16.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:21:16.208 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:21:16.398 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:21:16.398 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:21:16.438 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:16.438 -07 000000415 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:21:16.448 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:16.448 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:16.448 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:21:16.448 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-17 20:21:16.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:16.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:17.398 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:17.398 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:21:17.408 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:17.408 -07 000000541 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:17.428 -07 000000541 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:17.428 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:21:17.428 -07 000000541 INF: Y Motor: Moved to 70.6890 after 1425 ms (table move)
17-03-17 20:21:17.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168666 mm (DAC = 36845)
17-03-17 20:21:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35534
17-03-17 20:21:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35542
17-03-17 20:21:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.448 -07 000000541 INF: FPGA: Recv ZSGSRD 35545
17-03-17 20:21:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.458 -07 000000626 INF: FPGA: Recv ZSGSRD 35550
17-03-17 20:21:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35548
17-03-17 20:21:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35545
17-03-17 20:21:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.488 -07 000000541 INF: FPGA: Recv ZSGSRD 35552
17-03-17 20:21:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.498 -07 000000480 INF: FPGA: Recv ZSGSRD 35541
17-03-17 20:21:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35538
17-03-17 20:21:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.518 -07 000000462 INF: FPGA: Recv ZSGSRD 35542
17-03-17 20:21:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:17.528 -07 000000541 INF: FPGA: Recv ZPIEZORD 31513
17-03-17 20:21:17.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.9 V.
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35544 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35534 (-167.7 uncal um), Max = 35552 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35544, posNoise = 8, negNoise = 10
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: After move to -0.168666, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 105 ms (allowed 150 ms), total time = 1532 ms
17-03-17 20:21:17.538 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:17.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 20:21:17.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:17.588 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168665548377886. ----------
17-03-17 20:21:17.588 -07 000000610 INF: Cycle	37	Tile	14	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:17.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36668, sync = True, waitForSettling = True)
17-03-17 20:21:17.588 -07 000000610 INF: Z Motor: Moving to -0.167855 mm, started at -0.168666 mm, distance = 0.81 um
17-03-17 20:21:17.588 -07 000000610 INF: FPGA: Xmit ZDACW 36668\n [Z Motor]
17-03-17 20:21:17.588 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:21:17.598 -07 000000610 INF: FPGA: 'ZDACW 36668' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:17.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:17.598 -07 000000501 INF: FPGA: Recv ZDACR 36668
17-03-17 20:21:17.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:17.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.758 -07 000000626 INF: FPGA: Recv ZSGSRD 35417
17-03-17 20:21:17.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:17.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.768 -07 000000541 INF: FPGA: Recv ZSGSRD 35419
17-03-17 20:21:17.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35420
17-03-17 20:21:17.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.788 -07 000000626 INF: FPGA: Recv ZSGSRD 35425
17-03-17 20:21:17.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.798 -07 000000626 INF: FPGA: Recv ZSGSRD 35423
17-03-17 20:21:17.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.808 -07 000000541 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:21:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.818 -07 000000501 INF: FPGA: Recv ZSGSRD 35420
17-03-17 20:21:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35424
17-03-17 20:21:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.838 -07 000000626 INF: FPGA: Recv ZSGSRD 35418
17-03-17 20:21:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:17.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35416
17-03-17 20:21:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:17.858 -07 000000462 INF: FPGA: Recv ZPIEZORD 31325
17-03-17 20:21:17.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:17.868 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.0 V.
17-03-17 20:21:17.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35420 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35416 (-167.0 uncal um), Max = 35425 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:21:17.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35420, posNoise = 5, negNoise = 4
17-03-17 20:21:17.868 -07 000000610 INF: Z Motor: After move to -0.167855, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:17.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:21:17.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:17.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:17.868 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:17.868 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:17.868 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:17.868 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:17.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:17.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:17.868 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:17.868 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:17.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:17.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:17.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:17.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:17.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:17.878 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:17.888 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:21:17.888 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:21:17.888 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:21:17.888 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:21:17.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36845 150\n [Camera]
17-03-17 20:21:18.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:18.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:18.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:18.508 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:18.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:18.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:21:18.508 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:18.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:18.508 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:18.508 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:18.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:21:18.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36845 798
17-03-17 20:21:18.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:18.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:21:18.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:21:18.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:18.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:21:18.908 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:21:18.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:18.918 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:18.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:21:18.918 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:18.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:21:19.048 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:19.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:19.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:19.048 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:19.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:21:19.048 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:19.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:19.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:19.048 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:19.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:21:19.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:19.238 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:19.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36845 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall
17-03-17 20:21:19.238 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168475
17-03-17 20:21:19.238 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16848 mm
17-03-17 20:21:19.238 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:19.248 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:21:19.248 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:21:19.248 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:19.248 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 36803, sync = True, waitForSettling = False)
17-03-17 20:21:19.248 -07 000000541 INF: Z Motor: Moving to -0.168473 mm, started at -0.167869 mm, distance = -0.60 um
17-03-17 20:21:19.248 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:21:19.258 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:19.258 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:19.258 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:19.258 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:21:19.258 -07 000000541 INF: FPGA: Xmit ZDACW 36803\n [Z Motor]
17-03-17 20:21:19.258 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:21:19.268 -07 000000541 INF: FPGA: 'ZDACW 36803' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:21:19.268 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:19.268 -07 000000501 INF: FPGA: Recv ZDACR 36803
17-03-17 20:21:19.278 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:19.278 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:19.278 -07 000000541 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:21:19.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:21:19.428 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:21:19.428 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:19.428 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:19.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:21:19.428 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:21:19.428 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:19.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:19.428 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:21:19.438 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:21:19.648 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:21:19.648 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:21:19.688 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:19.688 -07 000000623 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:21:19.698 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:19.698 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:19.698 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:21:19.698 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:21:20.608 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.999021,
17-03-17 20:21:20.648 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:20.648 -07 000000433 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:21:20.658 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.658 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:20.678 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:20.678 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:20.678 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1435 ms (table move)
17-03-17 20:21:20.678 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168473 mm (DAC = 36803)
17-03-17 20:21:20.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35520
17-03-17 20:21:20.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:20.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:21:20.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:21:20.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.718 -07 000000462 INF: FPGA: Recv ZSGSRD 35521
17-03-17 20:21:20.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35520
17-03-17 20:21:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.738 -07 000000415 INF: FPGA: Recv ZSGSRD 35517
17-03-17 20:21:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.748 -07 000000012 INF: FPGA: Recv ZSGSRD 35510
17-03-17 20:21:20.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.758 -07 000000462 INF: FPGA: Recv ZSGSRD 35509
17-03-17 20:21:20.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.768 -07 000000623 INF: FPGA: Recv ZSGSRD 35517
17-03-17 20:21:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:20.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35515
17-03-17 20:21:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:20.788 -07 000000012 INF: FPGA: Recv ZPIEZORD 31504
17-03-17 20:21:20.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.9 V.
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35509 (-167.6 uncal um), Max = 35521 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 5, negNoise = 7
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: After move to -0.168473, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:21:20.798 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:20.838 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:21:20.838 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:20.838 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.168485670437917. ----------
17-03-17 20:21:20.838 -07 000000610 INF: Cycle	37	Tile	15	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:20.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36627, sync = True, waitForSettling = True)
17-03-17 20:21:20.838 -07 000000610 INF: Z Motor: Moving to -0.167668 mm, started at -0.168486 mm, distance = 0.82 um
17-03-17 20:21:20.838 -07 000000610 INF: FPGA: Xmit ZDACW 36627\n [Z Motor]
17-03-17 20:21:20.848 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:21:20.848 -07 000000610 INF: FPGA: 'ZDACW 36627' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:20.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:20.848 -07 000000478 INF: FPGA: Recv ZDACR 36627
17-03-17 20:21:20.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:20.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:21.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.008 -07 000000012 INF: FPGA: Recv ZSGSRD 35390
17-03-17 20:21:21.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:21.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35390
17-03-17 20:21:21.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.028 -07 000000012 INF: FPGA: Recv ZSGSRD 35394
17-03-17 20:21:21.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35394
17-03-17 20:21:21.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35388
17-03-17 20:21:21.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35388
17-03-17 20:21:21.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35391
17-03-17 20:21:21.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.078 -07 000000448 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:21:21.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:21:21.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:21.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35387
17-03-17 20:21:21.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:21.108 -07 000000541 INF: FPGA: Recv ZPIEZORD 31342
17-03-17 20:21:21.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:21.118 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -8.9 V.
17-03-17 20:21:21.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35390 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35390 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35387 (-166.8 uncal um), Max = 35394 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:21:21.118 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35390, posNoise = 4, negNoise = 3
17-03-17 20:21:21.118 -07 000000610 INF: Z Motor: After move to -0.167668, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:21.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:21:21.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:21.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:21.118 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:21.118 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:21.118 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:21.118 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:21.118 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:21.118 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:21.118 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:21.118 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:21.118 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:21.118 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:21.128 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 20:21:21.128 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:21.128 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:21:21.128 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:21.148 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 20:21:21.148 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 20:21:21.148 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 20:21:21.148 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 20:21:21.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36803 150\n [Camera]
17-03-17 20:21:21.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:21.758 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:21.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:21.758 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:21.758 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:21.758 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:21:21.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:21.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:21.768 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:21.768 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:21.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:21:21.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:21.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:21.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36803 798
17-03-17 20:21:22.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:22.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:21:22.148 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:21:22.148 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:22.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:21:22.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:21:22.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:22.158 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:22.158 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:21:22.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:22.168 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:21:22.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:22.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:22.308 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:22.308 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:22.308 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:21:22.308 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:22.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:22.308 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:22.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:22.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:21:22.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:22.498 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:22.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36803 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-17 20:21:22.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:21:22.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167676219708055. ------
17-03-17 20:21:22.498 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:22.498 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17369 mm
17-03-17 20:21:22.498 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:22.498 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37943, sync = True, waitForSettling = False)
17-03-17 20:21:22.498 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:21:22.498 -07 000000547 INF: Z Motor: Moving to -0.173692 mm, started at -0.167676 mm, distance = -6.02 um
17-03-17 20:21:22.498 -07 000000476 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:21:22.498 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:22.508 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:22.508 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:22.508 -07 000000415 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:21:22.518 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:22.518 -07 000000547 INF: FPGA: Xmit ZDACW 37943\n [Z Motor]
17-03-17 20:21:22.518 -07 000000476 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:22.518 -07 000000476 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:22.518 -07 000000476 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:21:22.518 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:21:22.528 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:21:22.528 -07 000000547 INF: FPGA: 'ZDACW 37943' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:21:22.538 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:22.548 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:22.548 -07 000000462 INF: FPGA: Recv ZDACR 37943
17-03-17 20:21:22.558 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:22.558 -07 000000547 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:21:22.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:21:22.688 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:21:22.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:22.688 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:21:22.688 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:21:22.688 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:22.688 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:22.698 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:22.698 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:21:22.698 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:21:22.728 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:21:22.728 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:21:22.908 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:21:22.908 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:21:22.948 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:22.948 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:21:22.958 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:22.958 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:22.958 -07 000000476 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:21:22.958 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:21:23.908 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:23.908 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:21:23.918 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:23.918 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:23.938 -07 000000476 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:23.938 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:23.938 -07 000000476 INF: Y Motor: Moved to 72.3496 after 1434 ms (table move)
17-03-17 20:21:23.938 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173692 mm (DAC = 37943)
17-03-17 20:21:23.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.948 -07 000000433 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:21:23.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:23.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.948 -07 000000433 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:21:23.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:23.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.958 -07 000000433 INF: FPGA: Recv ZSGSRD 36333
17-03-17 20:21:23.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:23.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.968 -07 000000541 INF: FPGA: Recv ZSGSRD 36326
17-03-17 20:21:23.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:23.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.978 -07 000000433 INF: FPGA: Recv ZSGSRD 36326
17-03-17 20:21:23.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:23.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.988 -07 000000462 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:21:23.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:23.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:23.998 -07 000000433 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:21:24.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.008 -07 000000433 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:21:24.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.018 -07 000000433 INF: FPGA: Recv ZSGSRD 36324
17-03-17 20:21:24.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.028 -07 000000433 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:21:24.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.038 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:24.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 32617
17-03-17 20:21:24.048 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.2 V.
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36328 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36326 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36324 (-172.8 uncal um), Max = 36333 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36328, posNoise = 5, negNoise = 4
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: After move to -0.173692, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:21:24.048 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:24.098 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:21:24.098 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:24.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:24.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:24.098 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:24.098 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:21:24.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:24.098 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:24.108 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:24.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:21:24.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:24.108 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:21:24.118 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:21:24.118 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:21:24.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:21:24.168 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:21:24.368 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:21:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:21:24.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:21:24.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:21:24.408 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:21:24.408 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:21:24.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 20:21:24.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:21:24.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:24.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:21:24.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:21:24.508 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:24.508 -07 000000626 INF: Autofocus start
17-03-17 20:21:24.508 -07 000000626 INF: MeasureProfile start
17-03-17 20:21:24.508 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:24.518 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:24.518 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:21:24.518 -07 000000626 INF: MeasureProfile done
17-03-17 20:21:24.518 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:21:24.518 -07 000000626 INF: Autofocus finished
17-03-17 20:21:24.718 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:21:24.718 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:21:24.718 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173702130697027. ----------
17-03-17 20:21:24.718 -07 000000610 INF: Cycle	37	Tile	16	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:24.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36458, sync = True, waitForSettling = True)
17-03-17 20:21:24.728 -07 000000610 INF: Z Motor: Moving to -0.166894 mm, started at -0.173702 mm, distance = 6.81 um
17-03-17 20:21:24.728 -07 000000610 INF: FPGA: Xmit ZDACW 36458\n [Z Motor]
17-03-17 20:21:24.728 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:21:24.738 -07 000000610 INF: FPGA: 'ZDACW 36458' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:24.738 -07 000000541 INF: FPGA: Recv ZDACR 36458
17-03-17 20:21:24.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.898 -07 000000448 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:21:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.908 -07 000000433 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:21:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:21:24.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.928 -07 000000012 INF: FPGA: Recv ZSGSRD 35270
17-03-17 20:21:24.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.938 -07 000000448 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:21:24.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.948 -07 000000433 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:21:24.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.958 -07 000000448 INF: FPGA: Recv ZSGSRD 35269
17-03-17 20:21:24.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.968 -07 000000012 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:21:24.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35267
17-03-17 20:21:24.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:24.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:21:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:24.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:24.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 31175
17-03-17 20:21:25.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:25.008 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.0 V.
17-03-17 20:21:25.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35271 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35270 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35267 (-166.0 uncal um), Max = 35276 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:21:25.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35271, posNoise = 5, negNoise = 4
17-03-17 20:21:25.008 -07 000000610 INF: Z Motor: After move to -0.166894, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:25.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:21:25.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:25.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:25.008 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:25.008 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:25.008 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:25.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:25.008 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:25.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:25.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:21:25.008 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:25.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:25.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:25.008 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:25.008 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:25.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:21:25.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:25.028 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:21:25.028 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:21:25.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:21:25.028 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:21:25.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36634 150\n [Camera]
17-03-17 20:21:25.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:25.648 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:25.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:25.648 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:25.648 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:25.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:21:25.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:25.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:25.648 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:25.648 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:25.648 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:21:25.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36634 798
17-03-17 20:21:25.988 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.988112,
17-03-17 20:21:25.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:21:26.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:21:26.018 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:21:26.018 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:26.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:21:26.028 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:21:26.028 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:26.028 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:26.028 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:26.028 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:21:26.038 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:21:26.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:21:26.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:21:26.188 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:26.188 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:26.188 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:21:26.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:21:26.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:21:26.188 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:26.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:26.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:21:26.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:26.378 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:26.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36634 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall
17-03-17 20:21:26.378 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167362
17-03-17 20:21:26.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16736 mm
17-03-17 20:21:26.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:26.388 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:21:26.388 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:21:26.388 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:26.388 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 36560, sync = True, waitForSettling = False)
17-03-17 20:21:26.388 -07 000000547 INF: Z Motor: Moving to -0.167361 mm, started at -0.166912 mm, distance = -0.45 um
17-03-17 20:21:26.388 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:21:26.398 -07 000000547 INF: FPGA: Xmit ZDACW 36560\n [Z Motor]
17-03-17 20:21:26.398 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:26.398 -07 000000501 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:26.398 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:21:26.398 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:26.398 -07 000000501 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:21:26.408 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:26.408 -07 000000547 INF: FPGA: 'ZDACW 36560' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:21:26.418 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:26.418 -07 000000623 INF: FPGA: Recv ZDACR 36560
17-03-17 20:21:26.428 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:26.428 -07 000000547 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:21:26.578 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:21:26.578 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:21:26.578 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:26.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:21:26.578 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:21:26.578 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:26.578 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:26.588 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:21:26.588 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:21:26.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:21:26.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:26.778 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:21:26.778 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:21:26.818 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:26.818 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:21:26.828 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:26.828 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:26.828 -07 000000501 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:21:26.828 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.201 mm/sec
17-03-17 20:21:27.778 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:27.778 -07 000000623 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:21:27.788 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:27.788 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:27.808 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:27.808 -07 000000501 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:27.808 -07 000000501 INF: Y Motor: Moved to 73.1763 after 1421 ms (table move)
17-03-17 20:21:27.808 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167361 mm (DAC = 36560)
17-03-17 20:21:27.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35336
17-03-17 20:21:27.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:27.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.818 -07 000000547 INF: FPGA: Recv ZSGSRD 35334
17-03-17 20:21:27.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.828 -07 000000551 INF: FPGA: Recv ZSGSRD 35339
17-03-17 20:21:27.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.838 -07 000000547 INF: FPGA: Recv ZSGSRD 35343
17-03-17 20:21:27.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.848 -07 000000626 INF: FPGA: Recv ZSGSRD 35343
17-03-17 20:21:27.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.858 -07 000000623 INF: FPGA: Recv ZSGSRD 35347
17-03-17 20:21:27.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.868 -07 000000433 INF: FPGA: Recv ZSGSRD 35343
17-03-17 20:21:27.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35342
17-03-17 20:21:27.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.888 -07 000000551 INF: FPGA: Recv ZSGSRD 35338
17-03-17 20:21:27.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:27.898 -07 000000501 INF: FPGA: Recv ZSGSRD 35335
17-03-17 20:21:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:27.908 -07 000000433 INF: FPGA: Recv ZPIEZORD 31295
17-03-17 20:21:27.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -8.9 V.
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35340 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35340 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35347 (-166.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35340, posNoise = 7, negNoise = 6
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: After move to -0.167361, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 20:21:27.918 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:27.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:21:27.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:27.968 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167355009100967. ----------
17-03-17 20:21:27.968 -07 000000610 INF: Cycle	37	Tile	17	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:27.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36383, sync = True, waitForSettling = True)
17-03-17 20:21:27.968 -07 000000610 INF: Z Motor: Moving to -0.166551 mm, started at -0.167355 mm, distance = 0.80 um
17-03-17 20:21:27.968 -07 000000610 INF: FPGA: Xmit ZDACW 36383\n [Z Motor]
17-03-17 20:21:27.968 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:21:27.978 -07 000000610 INF: FPGA: 'ZDACW 36383' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:27.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:27.978 -07 000000551 INF: FPGA: Recv ZDACR 36383
17-03-17 20:21:27.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:27.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:28.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:21:28.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.148 -07 000000623 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:21:28.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:21:28.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.168 -07 000000551 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:21:28.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35215
17-03-17 20:21:28.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35219
17-03-17 20:21:28.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.198 -07 000000547 INF: FPGA: Recv ZSGSRD 35217
17-03-17 20:21:28.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35215
17-03-17 20:21:28.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.218 -07 000000415 INF: FPGA: Recv ZSGSRD 35215
17-03-17 20:21:28.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:28.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35217
17-03-17 20:21:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:28.238 -07 000000626 INF: FPGA: Recv ZPIEZORD 31152
17-03-17 20:21:28.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:28.248 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.0 V.
17-03-17 20:21:28.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35217 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35215 (-165.7 uncal um), Max = 35219 (-165.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:21:28.248 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35217, posNoise = 2, negNoise = 2
17-03-17 20:21:28.248 -07 000000610 INF: Z Motor: After move to -0.166551, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:28.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:21:28.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:28.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:28.248 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:28.248 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:28.248 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:28.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:28.248 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:28.248 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:28.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:28.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:28.248 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:28.248 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:28.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:21:28.258 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:28.258 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:28.258 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:28.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:21:28.268 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:21:28.268 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:21:28.268 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:21:28.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36560 150\n [Camera]
17-03-17 20:21:28.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:28.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:28.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:28.878 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:28.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:28.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:21:28.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:28.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:28.888 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:28.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:28.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:21:29.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36560 798
17-03-17 20:21:29.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:29.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:21:29.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:21:29.278 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:21:29.278 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:29.278 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:21:29.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:29.288 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:21:29.288 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:21:29.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:21:29.298 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:21:29.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:29.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:29.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:29.428 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:29.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 20:21:29.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:29.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:29.428 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:29.428 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:29.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 20:21:29.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:29.618 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:29.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36560 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-17 20:21:29.618 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166941
17-03-17 20:21:29.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16694 mm
17-03-17 20:21:29.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:29.618 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:21:29.618 -07 000000415 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:21:29.618 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:29.618 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 36468, sync = True, waitForSettling = False)
17-03-17 20:21:29.618 -07 000000547 INF: Z Motor: Moving to -0.166940 mm, started at -0.166565 mm, distance = -0.37 um
17-03-17 20:21:29.628 -07 000000547 INF: FPGA: Xmit ZDACW 36468\n [Z Motor]
17-03-17 20:21:29.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:21:29.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:21:29.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:29.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:21:29.808 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:21:29.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:29.808 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:29.808 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:21:29.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:29.818 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:21:29.868 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:21:29.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:21:29.868 -07 000000547 INF: FPGA: 'ZDACW 36468' command took 0 ms to send, 233 ms to get response, and 244 ms overall
17-03-17 20:21:29.868 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:29.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 243 ms to get response, and 245 ms overall
17-03-17 20:21:29.868 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:29.868 -07 000000415 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:29.868 -07 000000415 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:21:29.868 -07 000000501 INF: FPGA: Recv ZDACR 36468
17-03-17 20:21:29.878 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:29.878 -07 000000547 INF: Z Motor: MoveAbsStepped took 252 ms (did NOT wait for settling yet))
17-03-17 20:21:29.878 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:30.248 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:21:30.248 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:21:30.278 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:30.288 -07 000000551 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:21:30.288 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:30.288 -07 000000415 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:30.288 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:21:30.288 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-17 20:21:31.238 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:31.238 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:21:31.248 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:31.248 -07 000000415 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:31.258 -07 000000415 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:31.258 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:31.258 -07 000000415 INF: Y Motor: Moved to 74.0078 after 1638 ms (table move)
17-03-17 20:21:31.268 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166940 mm (DAC = 36468)
17-03-17 20:21:31.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.268 -07 000000415 INF: FPGA: Recv ZSGSRD 35272
17-03-17 20:21:31.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:21:31.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.288 -07 000000415 INF: FPGA: Recv ZSGSRD 35267
17-03-17 20:21:31.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.298 -07 000000547 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:21:31.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.308 -07 000000501 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:21:31.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:21:31.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.328 -07 000000551 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:21:31.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.348 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.989471,
17-03-17 20:21:31.348 -07 000000501 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:21:31.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:31.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.378 -07 000000415 INF: FPGA: Recv ZSGSRD 35278
17-03-17 20:21:31.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:31.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.388 -07 000000551 INF: FPGA: Recv ZSGSRD 35275
17-03-17 20:21:31.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:31.408 -07 000000551 INF: FPGA: Recv ZPIEZORD 31227
17-03-17 20:21:31.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -8.9 V.
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35275 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35276 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35267 (-166.0 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35275, posNoise = 7, negNoise = 8
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: After move to -0.166940, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: Settle wait time = 1642 ms, measure time = 150 ms (allowed 150 ms), total time = 1792 ms
17-03-17 20:21:31.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1796 ms
17-03-17 20:21:31.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:31.418 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.166937435311753. ----------
17-03-17 20:21:31.418 -07 000000610 INF: Cycle	37	Tile	18	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36291, sync = True, waitForSettling = True)
17-03-17 20:21:31.418 -07 000000610 INF: Z Motor: Moving to -0.166130 mm, started at -0.166937 mm, distance = 0.81 um
17-03-17 20:21:31.438 -07 000000610 INF: FPGA: Xmit ZDACW 36291\n [Z Motor]
17-03-17 20:21:31.438 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:21:31.448 -07 000000610 INF: FPGA: 'ZDACW 36291' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:21:31.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:31.448 -07 000000415 INF: FPGA: Recv ZDACR 36291
17-03-17 20:21:31.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.608 -07 000000547 INF: FPGA: Recv ZSGSRD 35148
17-03-17 20:21:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35151
17-03-17 20:21:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.628 -07 000000547 INF: FPGA: Recv ZSGSRD 35151
17-03-17 20:21:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.638 -07 000000551 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:21:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:21:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35142
17-03-17 20:21:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.688 -07 000000501 INF: FPGA: Recv ZSGSRD 35146
17-03-17 20:21:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35156
17-03-17 20:21:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35151
17-03-17 20:21:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:31.748 -07 000000462 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:21:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:31.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:31.758 -07 000000551 INF: FPGA: Recv ZPIEZORD 31036
17-03-17 20:21:31.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:31.768 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.1 V.
17-03-17 20:21:31.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35150 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35150 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35142 (-165.2 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:31.768 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35150, posNoise = 7, negNoise = 8
17-03-17 20:21:31.768 -07 000000610 INF: Z Motor: After move to -0.166130, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:31.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 344 ms)
17-03-17 20:21:31.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:31.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:31.768 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:31.768 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:31.768 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:31.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:31.768 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:31.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:31.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:21:31.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:31.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:21:31.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:31.778 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:31.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:31.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:31.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:31.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:31.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:21:31.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:21:31.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:21:31.788 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:21:31.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36468 150\n [Camera]
17-03-17 20:21:31.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:32.408 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:32.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:32.408 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:32.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:32.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 20:21:32.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:32.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:32.408 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:32.408 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:32.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) start.
17-03-17 20:21:32.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36468 798
17-03-17 20:21:32.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:32.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:21:32.788 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:21:32.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:32.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:21:32.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:21:32.788 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:32.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:32.788 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:21:32.788 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:32.798 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:21:32.948 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:32.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:32.948 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:32.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:32.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 3122434152, 0x0, 391868352) start.
17-03-17 20:21:32.948 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:32.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:32.948 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:33.108 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:33.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:21:33.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:33.138 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:33.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36468 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:21:33.138 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166517
17-03-17 20:21:33.148 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16652 mm
17-03-17 20:21:33.148 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:33.148 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:21:33.148 -07 000000476 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 20:21:33.148 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:33.148 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36376, sync = True, waitForSettling = False)
17-03-17 20:21:33.148 -07 000000431 INF: Z Motor: Moving to -0.166519 mm, started at -0.166134 mm, distance = -0.38 um
17-03-17 20:21:33.148 -07 000000541 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:21:33.158 -07 000000431 INF: FPGA: Xmit ZDACW 36376\n [Z Motor]
17-03-17 20:21:33.158 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:33.158 -07 000000476 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:33.158 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:21:33.158 -07 000000476 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:33.158 -07 000000476 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:21:33.168 -07 000000431 INF: FPGA: 'ZDACW 36376' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:21:33.168 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:33.178 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:33.178 -07 000000551 INF: FPGA: Recv ZDACR 36376
17-03-17 20:21:33.188 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:33.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 20:21:33.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 3122434152, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 20:21:33.358 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:21:33.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:33.358 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:21:33.358 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:21:33.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:21:33.488 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:21:33.488 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:33.488 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:21:33.498 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-17 20:21:33.538 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:21:33.538 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:21:33.568 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:33.568 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:21:33.578 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:33.578 -07 000000476 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:33.578 -07 000000476 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:21:33.578 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 20:21:34.528 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:34.528 -07 000000448 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:21:34.538 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:34.538 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:34.548 -07 000000476 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:34.548 -07 000000476 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:21:34.548 -07 000000476 INF: Y Motor: Moved to 74.8325 after 1402 ms (table move)
17-03-17 20:21:34.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166519 mm (DAC = 36376)
17-03-17 20:21:34.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35206
17-03-17 20:21:34.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:21:34.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:21:34.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:34.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.568 -07 000000476 INF: FPGA: Recv ZSGSRD 35209
17-03-17 20:21:34.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35204
17-03-17 20:21:34.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35211
17-03-17 20:21:34.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35210
17-03-17 20:21:34.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35220
17-03-17 20:21:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.618 -07 000000476 INF: FPGA: Recv ZSGSRD 35211
17-03-17 20:21:34.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.628 -07 000000448 INF: FPGA: Recv ZSGSRD 35208
17-03-17 20:21:34.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.638 -07 000000551 INF: FPGA: Recv ZSGSRD 35216
17-03-17 20:21:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:34.648 -07 000000541 INF: FPGA: Recv ZPIEZORD 31130
17-03-17 20:21:34.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.0 V.
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35210 (-165.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35204 (-165.6 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 9, negNoise = 8
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: After move to -0.166519, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: Settle wait time = 1405 ms, measure time = 102 ms (allowed 150 ms), total time = 1507 ms
17-03-17 20:21:34.658 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:34.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1559 ms
17-03-17 20:21:34.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:34.708 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.166532709946822. ----------
17-03-17 20:21:34.708 -07 000000610 INF: Cycle	37	Tile	19	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:34.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36199, sync = True, waitForSettling = True)
17-03-17 20:21:34.708 -07 000000610 INF: Z Motor: Moving to -0.165708 mm, started at -0.166533 mm, distance = 0.82 um
17-03-17 20:21:34.708 -07 000000610 INF: FPGA: Xmit ZDACW 36199\n [Z Motor]
17-03-17 20:21:34.708 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:21:34.718 -07 000000610 INF: FPGA: 'ZDACW 36199' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:34.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:34.718 -07 000000541 INF: FPGA: Recv ZDACR 36199
17-03-17 20:21:34.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.878 -07 000000551 INF: FPGA: Recv ZSGSRD 35085
17-03-17 20:21:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.888 -07 000000551 INF: FPGA: Recv ZSGSRD 35086
17-03-17 20:21:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.898 -07 000000448 INF: FPGA: Recv ZSGSRD 35088
17-03-17 20:21:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35086
17-03-17 20:21:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35089
17-03-17 20:21:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.928 -07 000000448 INF: FPGA: Recv ZSGSRD 35086
17-03-17 20:21:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35086
17-03-17 20:21:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35087
17-03-17 20:21:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.958 -07 000000448 INF: FPGA: Recv ZSGSRD 35084
17-03-17 20:21:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:34.968 -07 000000448 INF: FPGA: Recv ZSGSRD 35079
17-03-17 20:21:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:34.978 -07 000000541 INF: FPGA: Recv ZPIEZORD 30967
17-03-17 20:21:34.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:34.988 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.1 V.
17-03-17 20:21:34.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35086 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35079 (-164.8 uncal um), Max = 35089 (-164.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:21:34.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35086, posNoise = 3, negNoise = 7
17-03-17 20:21:34.988 -07 000000610 INF: Z Motor: After move to -0.165708, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:34.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:21:34.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:34.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:34.988 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:34.988 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:34.988 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:34.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:34.988 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:34.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:34.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:34.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:34.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:34.988 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:34.988 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:34.988 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:34.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:21:34.998 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:35.008 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:21:35.008 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:21:35.008 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:21:35.008 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:21:35.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36376 150\n [Camera]
17-03-17 20:21:35.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:35.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:35.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:35.628 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:35.628 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:35.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:35.628 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:35.628 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:35.628 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:21:35.638 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:35.638 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) start.
17-03-17 20:21:35.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36376 798
17-03-17 20:21:35.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:36.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:21:36.008 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:21:36.008 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:36.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1057361968, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:21:36.008 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:21:36.008 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:36.008 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:36.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:21:36.008 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:36.018 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:21:36.168 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:36.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:36.168 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:36.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:36.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:36.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:36.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:36.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) start.
17-03-17 20:21:36.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:36.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:21:36.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:36.358 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:36.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36376 150' command took 2 ms to send, 1336 ms to get response, and 1346 ms overall
17-03-17 20:21:36.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1092784232, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:21:36.668 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:21:36.668 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:36.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:21:36.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:21:36.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:36.668 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:36.668 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 20:21:36.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:21:36.678 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:36.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 20:21:36.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:21:36.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:21:36.758 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.994908,
17-03-17 20:21:36.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 20:21:36.758 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:21:36.768 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:21:36.768 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 20:21:36.778 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:21:36.778 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:36.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:36.798 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:21:37.298 -07 000000433 INF: FPGA: Recv EMIN
17-03-17 20:21:37.298 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 522 ms overall
17-03-17 20:21:37.298 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:21:37.298 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 20:21:37.308 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:37.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:21:37.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.16572325921696. ------
17-03-17 20:21:37.308 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:37.308 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14026 mm
17-03-17 20:21:37.308 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:37.308 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:21:37.308 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:21:37.308 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30639, sync = True, waitForSettling = False)
17-03-17 20:21:37.308 -07 000000433 INF: Z Motor: Moving to -0.140256 mm, started at -0.165723 mm, distance = 25.47 um
17-03-17 20:21:37.308 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:37.318 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:37.318 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:37.318 -07 000000448 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:21:37.328 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:21:37.328 -07 000000476 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:37.328 -07 000000433 INF: FPGA: Xmit ZDACW 30639\n [Z Motor]
17-03-17 20:21:37.328 -07 000000476 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:21:37.328 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:21:37.328 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:21:37.338 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:21:37.338 -07 000000433 INF: FPGA: 'ZDACW 30639' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:21:37.348 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:21:37.358 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:37.358 -07 000000448 INF: FPGA: Recv ZDACR 30639
17-03-17 20:21:37.368 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:37.368 -07 000000433 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:21:37.538 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:21:37.538 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:21:38.968 -07 000000433 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 20:21:38.968 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 20:21:38.968 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:21:38.968 -07 000000476 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:21:38.968 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 20:21:41.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:41.818 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:41.818 -07 000000448 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:21:41.828 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:41.828 -07 000000476 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:41.858 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:41.858 -07 000000476 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 20:21:41.858 -07 000000476 INF: Y Motor: Moved to 59.9116 after 4542 ms
17-03-17 20:21:41.858 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140256 mm (DAC = 30639)
17-03-17 20:21:41.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.858 -07 000000623 INF: FPGA: Recv ZSGSRD 31130
17-03-17 20:21:41.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:41.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.868 -07 000000476 INF: FPGA: Recv ZSGSRD 31125
17-03-17 20:21:41.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.878 -07 000000551 INF: FPGA: Recv ZSGSRD 31119
17-03-17 20:21:41.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.888 -07 000000623 INF: FPGA: Recv ZSGSRD 31123
17-03-17 20:21:41.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:41.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.898 -07 000000623 INF: FPGA: Recv ZSGSRD 31128
17-03-17 20:21:41.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.908 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.908 -07 000000551 INF: FPGA: Recv ZSGSRD 31117
17-03-17 20:21:41.918 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.918 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.918 -07 000000476 INF: FPGA: Recv ZSGSRD 31127
17-03-17 20:21:41.928 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.928 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.928 -07 000000551 INF: FPGA: Recv ZSGSRD 31122
17-03-17 20:21:41.938 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.938 -07 000000476 INF: FPGA: Recv ZSGSRD 31125
17-03-17 20:21:41.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:41.948 -07 000000476 INF: FPGA: Recv ZSGSRD 31125
17-03-17 20:21:41.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.958 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:41.958 -07 000000476 INF: FPGA: Recv ZPIEZORD 26790
17-03-17 20:21:41.968 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.675 V. Piezo Error = -9.5 V.
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31124 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31125 (-139.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31117 (-139.4 uncal um), Max = 31130 (-139.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31124, posNoise = 6, negNoise = 7
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: After move to -0.140256, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: Settle wait time = 4545 ms, measure time = 106 ms (allowed 150 ms), total time = 4651 ms
17-03-17 20:21:41.968 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:42.018 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:21:42.018 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:42.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:42.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:42.018 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:42.018 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:42.018 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:21:42.018 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:42.018 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:21:42.018 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:21:42.048 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:21:42.048 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:21:42.048 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:21:42.048 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:21:42.058 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:21:42.058 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 20:21:42.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:21:42.108 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:21:42.148 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.983999,
17-03-17 20:21:42.308 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:21:42.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:21:42.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:21:42.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:21:42.348 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:21:42.348 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:21:42.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:21:42.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:21:42.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:42.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:21:42.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:21:42.448 -07 000000541 INF: Image SNR check: start
17-03-17 20:21:42.468 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:42.468 -07 000000541 INF: Image SNR check: pass  [peak (Max-Min)=60.34]
17-03-17 20:21:42.468 -07 000000541 INF: Autofocus start
17-03-17 20:21:42.468 -07 000000541 INF: MeasureProfile start
17-03-17 20:21:42.468 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:42.478 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:21:42.478 -07 000000541 INF: MeasureProfile done
17-03-17 20:21:42.478 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:21:42.478 -07 000000541 INF: Autofocus finished
17-03-17 20:21:42.498 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:21:42.698 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:21:42.698 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:21:42.698 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140270530711303. ----------
17-03-17 20:21:42.698 -07 000000610 INF: Cycle	37	Tile	1	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:42.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29163, sync = True, waitForSettling = True)
17-03-17 20:21:42.708 -07 000000610 INF: Z Motor: Moving to -0.133500 mm, started at -0.140271 mm, distance = 6.77 um
17-03-17 20:21:42.708 -07 000000610 INF: FPGA: Xmit ZDACW 29163\n [Z Motor]
17-03-17 20:21:42.708 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:21:42.718 -07 000000610 INF: FPGA: 'ZDACW 29163' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:42.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:42.718 -07 000000415 INF: FPGA: Recv ZDACR 29163
17-03-17 20:21:42.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.878 -07 000000415 INF: FPGA: Recv ZSGSRD 30067
17-03-17 20:21:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.888 -07 000000476 INF: FPGA: Recv ZSGSRD 30074
17-03-17 20:21:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.898 -07 000000415 INF: FPGA: Recv ZSGSRD 30073
17-03-17 20:21:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.908 -07 000000476 INF: FPGA: Recv ZSGSRD 30063
17-03-17 20:21:42.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.918 -07 000000623 INF: FPGA: Recv ZSGSRD 30069
17-03-17 20:21:42.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.928 -07 000000462 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:21:42.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.938 -07 000000415 INF: FPGA: Recv ZSGSRD 30069
17-03-17 20:21:42.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.948 -07 000000476 INF: FPGA: Recv ZSGSRD 30072
17-03-17 20:21:42.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.958 -07 000000623 INF: FPGA: Recv ZSGSRD 30065
17-03-17 20:21:42.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:42.968 -07 000000476 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:21:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:42.978 -07 000000415 INF: FPGA: Recv ZPIEZORD 25681
17-03-17 20:21:42.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:42.988 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.6 V.
17-03-17 20:21:42.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30070 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30063 (-132.7 uncal um), Max = 30079 (-132.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:21:42.988 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30070, posNoise = 9, negNoise = 7
17-03-17 20:21:42.988 -07 000000610 INF: Z Motor: After move to -0.133500, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:42.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:21:42.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:42.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:42.988 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:42.988 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:42.988 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:42.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:42.988 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:42.988 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:42.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:21:42.988 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:42.988 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:42.988 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:21:42.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:42.998 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:42.998 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:21:42.998 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:21:43.008 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:21:43.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:43.018 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:21:43.018 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:43.028 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:21:43.028 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 20:21:43.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29340 150\n [Camera]
17-03-17 20:21:43.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:43.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:21:43.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:21:43.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:43.648 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-17 20:21:43.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-17 20:21:43.648 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:43.648 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:43.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1057361968, 0x0, 391868352) start.
17-03-17 20:21:43.658 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:43.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) start.
17-03-17 20:21:43.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29340 798
17-03-17 20:21:43.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:44.028 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1057361968, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:21:44.028 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:21:44.028 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:44.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128206496, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:21:44.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:21:44.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:44.028 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:44.028 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:21:44.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:44.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:21:44.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:44.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:44.178 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:44.188 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:44.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:21:44.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:44.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:44.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:44.188 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:44.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 20:21:44.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:44.368 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:44.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29340 150' command took 2 ms to send, 1339 ms to get response, and 1347 ms overall
17-03-17 20:21:44.378 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.134037
17-03-17 20:21:44.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13404 mm
17-03-17 20:21:44.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:44.378 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:21:44.378 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 20:21:44.378 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:44.378 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29280, sync = True, waitForSettling = False)
17-03-17 20:21:44.378 -07 000000623 INF: Z Motor: Moving to -0.134035 mm, started at -0.133499 mm, distance = -0.54 um
17-03-17 20:21:44.378 -07 000000415 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:21:44.388 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:21:44.388 -07 000000012 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:44.388 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:44.388 -07 000000012 INF: Y Motor: Moving 1330 steps2
17-03-17 20:21:44.388 -07 000000623 INF: FPGA: Xmit ZDACW 29280\n [Z Motor]
17-03-17 20:21:44.388 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:21:44.398 -07 000000623 INF: FPGA: 'ZDACW 29280' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:21:44.398 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:44.398 -07 000000462 INF: FPGA: Recv ZDACR 29280
17-03-17 20:21:44.408 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:44.408 -07 000000623 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 20:21:44.408 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:44.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:21:44.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:21:44.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:44.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:21:44.588 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:21:44.588 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:44.598 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:44.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:21:44.598 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:44.598 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:21:44.788 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:21:44.788 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:21:44.808 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:44.818 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:21:44.818 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:21:44.818 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:44.818 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:21:44.818 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.831 mm, average velocity = 2.077 mm/sec
17-03-17 20:21:45.768 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:45.768 -07 000000623 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:21:45.778 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.778 -07 000000012 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:45.798 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:45.798 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:21:45.798 -07 000000012 INF: Y Motor: Moved to 60.7339 after 1419 ms (table move)
17-03-17 20:21:45.798 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134035 mm (DAC = 29280)
17-03-17 20:21:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.798 -07 000000415 INF: FPGA: Recv ZSGSRD 30155
17-03-17 20:21:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.808 -07 000000438 INF: FPGA: Recv ZSGSRD 30160
17-03-17 20:21:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.818 -07 000000551 INF: FPGA: Recv ZSGSRD 30153
17-03-17 20:21:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.828 -07 000000476 INF: FPGA: Recv ZSGSRD 30151
17-03-17 20:21:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30148
17-03-17 20:21:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30155
17-03-17 20:21:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.858 -07 000000547 INF: FPGA: Recv ZSGSRD 30152
17-03-17 20:21:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.868 -07 000000476 INF: FPGA: Recv ZSGSRD 30152
17-03-17 20:21:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30159
17-03-17 20:21:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:45.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30156
17-03-17 20:21:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:45.898 -07 000000547 INF: FPGA: Recv ZPIEZORD 25875
17-03-17 20:21:45.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.4 V.
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30154 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30154 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30148 (-133.2 uncal um), Max = 30160 (-133.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30154, posNoise = 6, negNoise = 6
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: After move to -0.134035, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 105 ms (allowed 150 ms), total time = 1526 ms
17-03-17 20:21:45.908 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:45.958 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 20:21:45.958 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:45.958 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.134039044933795. ----------
17-03-17 20:21:45.958 -07 000000610 INF: Cycle	37	Tile	2	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:45.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = True)
17-03-17 20:21:45.958 -07 000000610 INF: Z Motor: Moving to -0.133230 mm, started at -0.134039 mm, distance = 0.81 um
17-03-17 20:21:45.958 -07 000000610 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-17 20:21:45.958 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:21:45.968 -07 000000610 INF: FPGA: 'ZDACW 29104' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:45.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:45.968 -07 000000476 INF: FPGA: Recv ZDACR 29104
17-03-17 20:21:45.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:45.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:21:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:21:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.148 -07 000000476 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:21:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.158 -07 000000547 INF: FPGA: Recv ZSGSRD 30024
17-03-17 20:21:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.168 -07 000000547 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:21:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:21:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30037
17-03-17 20:21:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.198 -07 000000476 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:21:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30030
17-03-17 20:21:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:46.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:21:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:46.228 -07 000000438 INF: FPGA: Recv ZPIEZORD 25686
17-03-17 20:21:46.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:46.238 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.5 V.
17-03-17 20:21:46.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30029 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30037 (-132.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:21:46.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30029, posNoise = 8, negNoise = 5
17-03-17 20:21:46.238 -07 000000610 INF: Z Motor: After move to -0.133230, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:46.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:21:46.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:46.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:46.238 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:46.238 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:46.238 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:46.238 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:46.238 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:46.238 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:46.238 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:46.238 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:46.248 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:46.248 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:46.248 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:46.248 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:46.248 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:46.248 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:46.258 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:21:46.258 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:21:46.258 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:21:46.258 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:21:46.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29280 150\n [Camera]
17-03-17 20:21:46.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:46.778 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:46.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:46.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:46.878 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:46.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:46.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:21:46.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:46.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:46.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:46.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:46.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:21:47.068 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29280 798
17-03-17 20:21:47.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:47.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:21:47.268 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:21:47.268 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:47.268 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:47.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:21:47.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:21:47.268 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:47.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:47.278 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:21:47.278 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:21:47.418 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:47.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:47.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:47.418 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:47.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:21:47.418 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:47.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:47.428 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:47.428 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:47.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:21:47.508 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.96762,
17-03-17 20:21:47.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:47.608 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:47.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29280 150' command took 2 ms to send, 1338 ms to get response, and 1346 ms overall
17-03-17 20:21:47.618 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133948
17-03-17 20:21:47.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13395 mm
17-03-17 20:21:47.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:47.618 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:21:47.618 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 20:21:47.618 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29261, sync = True, waitForSettling = False)
17-03-17 20:21:47.618 -07 000000626 INF: Z Motor: Moving to -0.133948 mm, started at -0.133236 mm, distance = -0.71 um
17-03-17 20:21:47.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:47.738 -07 000000626 INF: FPGA: Xmit ZDACW 29261\n [Z Motor]
17-03-17 20:21:47.738 -07 000000448 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:21:47.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 20:21:47.738 -07 000000478 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:47.738 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:47.738 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:21:47.748 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:47.748 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:21:47.748 -07 000000626 INF: FPGA: 'ZDACW 29261' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 20:21:47.758 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:47.758 -07 000000547 INF: FPGA: Recv ZDACR 29261
17-03-17 20:21:47.768 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:47.768 -07 000000626 INF: Z Motor: MoveAbsStepped took 146 ms (did NOT wait for settling yet))
17-03-17 20:21:47.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 20:21:47.828 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:21:47.828 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:47.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:21:47.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:21:47.828 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:47.828 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:47.828 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:21:47.828 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:47.838 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:21:48.118 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:21:48.118 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 20:21:48.158 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:48.158 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:21:48.168 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:48.168 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:48.168 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:21:48.168 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.213 mm/sec
17-03-17 20:21:49.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:49.118 -07 000000462 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:21:49.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.128 -07 000000478 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:49.148 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:49.148 -07 000000478 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:21:49.148 -07 000000478 INF: Y Motor: Moved to 61.5649 after 1530 ms (table move)
17-03-17 20:21:49.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133948 mm (DAC = 29261)
17-03-17 20:21:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.148 -07 000000626 INF: FPGA: Recv ZSGSRD 30136
17-03-17 20:21:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.158 -07 000000462 INF: FPGA: Recv ZSGSRD 30131
17-03-17 20:21:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30140
17-03-17 20:21:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30139
17-03-17 20:21:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.188 -07 000000547 INF: FPGA: Recv ZSGSRD 30143
17-03-17 20:21:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.198 -07 000000476 INF: FPGA: Recv ZSGSRD 30148
17-03-17 20:21:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.208 -07 000000547 INF: FPGA: Recv ZSGSRD 30140
17-03-17 20:21:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30141
17-03-17 20:21:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.228 -07 000000476 INF: FPGA: Recv ZSGSRD 30136
17-03-17 20:21:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30145
17-03-17 20:21:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 11 ms overall
17-03-17 20:21:49.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:49.248 -07 000000547 INF: FPGA: Recv ZPIEZORD 25873
17-03-17 20:21:49.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.4 V.
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30140 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30140 (-133.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30131 (-133.1 uncal um), Max = 30148 (-133.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30140, posNoise = 8, negNoise = 9
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: After move to -0.133948, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: Settle wait time = 1532 ms, measure time = 104 ms (allowed 150 ms), total time = 1636 ms
17-03-17 20:21:49.258 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:49.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1689 ms
17-03-17 20:21:49.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:49.308 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.13394910596381. ----------
17-03-17 20:21:49.308 -07 000000610 INF: Cycle	37	Tile	3	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:49.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29084, sync = True, waitForSettling = True)
17-03-17 20:21:49.308 -07 000000610 INF: Z Motor: Moving to -0.133138 mm, started at -0.133949 mm, distance = 0.81 um
17-03-17 20:21:49.308 -07 000000610 INF: FPGA: Xmit ZDACW 29084\n [Z Motor]
17-03-17 20:21:49.308 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:21:49.318 -07 000000610 INF: FPGA: 'ZDACW 29084' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:49.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:49.318 -07 000000547 INF: FPGA: Recv ZDACR 29084
17-03-17 20:21:49.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:21:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.488 -07 000000547 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:21:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:21:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.508 -07 000000547 INF: FPGA: Recv ZSGSRD 30010
17-03-17 20:21:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:21:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.528 -07 000000547 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:21:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30011
17-03-17 20:21:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.548 -07 000000547 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:21:49.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.558 -07 000000547 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:21:49.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:49.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30019
17-03-17 20:21:49.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:49.578 -07 000000623 INF: FPGA: Recv ZPIEZORD 25710
17-03-17 20:21:49.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:49.588 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.5 V.
17-03-17 20:21:49.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30016 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30016 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30010 (-132.3 uncal um), Max = 30021 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:49.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30016, posNoise = 5, negNoise = 6
17-03-17 20:21:49.588 -07 000000610 INF: Z Motor: After move to -0.133138, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:49.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:21:49.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:49.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:49.588 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:49.588 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:49.588 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:49.588 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:49.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:49.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:49.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:21:49.588 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:49.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:21:49.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:49.598 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:49.598 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:49.598 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:49.598 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:49.608 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:21:49.608 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:21:49.608 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:21:49.608 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:21:49.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29261 150\n [Camera]
17-03-17 20:21:49.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:50.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:50.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:50.228 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:50.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:50.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:50.228 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:50.228 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:50.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:21:50.238 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:50.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:21:50.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29261 798
17-03-17 20:21:50.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:50.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:21:50.608 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:21:50.608 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:50.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:21:50.618 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:21:50.618 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:50.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:50.618 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:50.618 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:21:50.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:21:50.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:50.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:50.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:50.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:50.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:50.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:50.778 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:50.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:21:50.778 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:50.778 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:21:50.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:50.958 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:50.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29261 150' command took 2 ms to send, 1336 ms to get response, and 1346 ms overall
17-03-17 20:21:50.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:21:50.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.133152503658232. ------
17-03-17 20:21:50.968 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13925 mm
17-03-17 20:21:50.968 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:50.968 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:50.968 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:21:50.968 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 20:21:50.968 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:50.968 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30418, sync = True, waitForSettling = False)
17-03-17 20:21:50.968 -07 000000431 INF: Z Motor: Moving to -0.139245 mm, started at -0.133153 mm, distance = -6.09 um
17-03-17 20:21:50.978 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:50.978 -07 000000431 INF: FPGA: Xmit ZDACW 30418\n [Z Motor]
17-03-17 20:21:50.978 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:21:50.988 -07 000000431 INF: FPGA: 'ZDACW 30418' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:21:50.988 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:50.988 -07 000000547 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:21:50.998 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:21:50.998 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:21:50.998 -07 000000438 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:50.998 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:50.998 -07 000000438 INF: Y Motor: Moving 1340 steps-17
17-03-17 20:21:51.008 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:51.008 -07 000000623 INF: FPGA: Recv ZDACR 30418
17-03-17 20:21:51.018 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:51.018 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:21:51.018 -07 000000431 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:21:51.158 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:21:51.158 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:21:51.158 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:51.158 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:21:51.158 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:21:51.158 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:51.158 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:51.158 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:21:51.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:51.168 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:21:51.198 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:21:51.198 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:21:51.398 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:21:51.398 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-17 20:21:51.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:51.438 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:21:51.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:51.438 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:51.438 -07 000000438 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:21:51.438 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 20:21:51.778 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:51.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:52.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:52.388 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:21:52.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:52.398 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:52.418 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:52.418 -07 000000438 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:52.418 -07 000000438 INF: Y Motor: Moved to 62.3960 after 1446 ms (table move)
17-03-17 20:21:52.418 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139245 mm (DAC = 30418)
17-03-17 20:21:52.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.418 -07 000000551 INF: FPGA: Recv ZSGSRD 30964
17-03-17 20:21:52.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:52.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30960
17-03-17 20:21:52.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30972
17-03-17 20:21:52.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.448 -07 000000541 INF: FPGA: Recv ZSGSRD 30969
17-03-17 20:21:52.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30965
17-03-17 20:21:52.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.468 -07 000000431 INF: FPGA: Recv ZSGSRD 30966
17-03-17 20:21:52.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30964
17-03-17 20:21:52.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30963
17-03-17 20:21:52.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:52.498 -07 000000433 INF: FPGA: Recv ZSGSRD 30962
17-03-17 20:21:52.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:52.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:53.188 -07 000000012 INF: FPGA: Recv ZSGSRD 30967
17-03-17 20:21:53.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 670 ms to get response, and 680 ms overall
17-03-17 20:21:53.188 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:53.188 -07 000000433 INF: FPGA: Recv ZPIEZORD 26995
17-03-17 20:21:53.198 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -8.7 V.
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30965 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30964 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30960 (-138.4 uncal um), Max = 30972 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30965, posNoise = 7, negNoise = 5
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: After move to -0.139245, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: Settle wait time = 1450 ms, measure time = 774 ms (allowed 150 ms), total time = 2224 ms
17-03-17 20:21:53.198 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 774 ms, longer than max expected time of 150 ms
17-03-17 20:21:53.198 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2228 ms
17-03-17 20:21:53.198 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:53.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:53.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:53.198 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:53.198 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:21:53.198 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:53.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:53.198 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:21:53.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:21:53.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:21:53.208 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:21:53.218 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:21:53.218 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:21:53.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:21:53.268 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:21:53.468 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:21:53.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:21:53.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:21:53.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:21:53.498 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.971733,
17-03-17 20:21:53.498 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:21:53.508 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:21:53.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 20:21:53.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:21:53.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:53.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:21:53.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:21:53.608 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:21:53.608 -07 000000438 INF: Autofocus start
17-03-17 20:21:53.608 -07 000000438 INF: MeasureProfile start
17-03-17 20:21:53.608 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:21:53.618 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:53.618 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:21:53.638 -07 000000438 INF: MeasureProfile done
17-03-17 20:21:53.638 -07 000000438 INF: X=-22  Z correction [um]=-0.110495
17-03-17 20:21:53.638 -07 000000438 INF: Autofocus finished
17-03-17 20:21:53.818 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:21:53.818 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:21:53.818 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139249080980763. ----------
17-03-17 20:21:53.828 -07 000000610 INF: Cycle	37	Tile	4	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:53.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28907, sync = True, waitForSettling = True)
17-03-17 20:21:53.828 -07 000000610 INF: Z Motor: Moving to -0.132328 mm, started at -0.139249 mm, distance = 6.92 um
17-03-17 20:21:53.838 -07 000000610 INF: FPGA: Xmit ZDACW 28907\n [Z Motor]
17-03-17 20:21:53.838 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:21:53.848 -07 000000610 INF: FPGA: 'ZDACW 28907' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:21:53.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:53.848 -07 000000012 INF: FPGA: Recv ZDACR 28907
17-03-17 20:21:53.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:53.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.008 -07 000000480 INF: FPGA: Recv ZSGSRD 29887
17-03-17 20:21:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:21:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29885
17-03-17 20:21:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.038 -07 000000551 INF: FPGA: Recv ZSGSRD 29883
17-03-17 20:21:54.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29890
17-03-17 20:21:54.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29889
17-03-17 20:21:54.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29891
17-03-17 20:21:54.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.078 -07 000000551 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:21:54.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:21:54.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:54.098 -07 000000438 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:21:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:54.108 -07 000000012 INF: FPGA: Recv ZPIEZORD 25553
17-03-17 20:21:54.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:54.118 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.5 V.
17-03-17 20:21:54.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29889 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29883 (-131.5 uncal um), Max = 29893 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:21:54.118 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29889, posNoise = 4, negNoise = 6
17-03-17 20:21:54.118 -07 000000610 INF: Z Motor: After move to -0.132328, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:54.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 20:21:54.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:54.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:54.118 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:54.118 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:54.118 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:54.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:54.118 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:54.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:54.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:21:54.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:54.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:21:54.118 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:54.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:54.128 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:54.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:54.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:54.138 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:21:54.138 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:21:54.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:21:54.138 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:21:54.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29083 150\n [Camera]
17-03-17 20:21:54.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:54.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:54.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:54.748 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:54.758 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:54.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 20:21:54.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:54.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:54.758 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:54.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:54.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:21:54.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29083 798
17-03-17 20:21:55.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:21:55.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:21:55.138 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:21:55.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:55.148 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:55.148 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:21:55.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:21:55.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:21:55.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:55.258 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:21:55.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 20:21:55.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:21:55.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:21:55.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:55.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:21:55.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:21:55.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:55.298 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:55.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 654475248, 0x0, 418435064) start.
17-03-17 20:21:55.308 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:55.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:21:55.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:21:55.488 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:55.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29083 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:21:55.488 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132963
17-03-17 20:21:55.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13296 mm
17-03-17 20:21:55.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:55.488 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:21:55.488 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 20:21:55.488 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:55.488 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29046, sync = True, waitForSettling = False)
17-03-17 20:21:55.488 -07 000000480 INF: Z Motor: Moving to -0.132964 mm, started at -0.132337 mm, distance = -0.63 um
17-03-17 20:21:55.498 -07 000000480 INF: FPGA: Xmit ZDACW 29046\n [Z Motor]
17-03-17 20:21:55.498 -07 000000551 INF: FPGA: Recv YRDPOS 127788
17-03-17 20:21:55.498 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:21:55.498 -07 000000438 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:55.498 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:21:55.498 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:55.498 -07 000000438 INF: Y Motor: Moving 1338 steps-14
17-03-17 20:21:55.508 -07 000000480 INF: FPGA: 'ZDACW 29046' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:21:55.508 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:55.508 -07 000000551 INF: FPGA: Recv ZDACR 29046
17-03-17 20:21:55.518 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:55.518 -07 000000480 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:21:55.518 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:55.698 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:21:55.698 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:21:55.698 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:55.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 654475248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:21:55.698 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:21:55.698 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:55.708 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:55.708 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:21:55.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:21:55.708 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:21:55.898 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:21:55.898 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-17 20:21:55.928 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:55.928 -07 000000012 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:21:55.938 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:21:55.938 -07 000000438 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:55.938 -07 000000438 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:21:55.938 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.123 mm/sec
17-03-17 20:21:56.778 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:21:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:21:56.888 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:56.888 -07 000000480 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:21:56.898 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.898 -07 000000438 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:56.918 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:21:56.918 -07 000000438 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:21:56.918 -07 000000438 INF: Y Motor: Moved to 63.2251 after 1424 ms (table move)
17-03-17 20:21:56.918 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132964 mm (DAC = 29046)
17-03-17 20:21:56.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.918 -07 000000431 INF: FPGA: Recv ZSGSRD 29983
17-03-17 20:21:56.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:21:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.928 -07 000000431 INF: FPGA: Recv ZSGSRD 29982
17-03-17 20:21:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29990
17-03-17 20:21:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29985
17-03-17 20:21:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.958 -07 000000431 INF: FPGA: Recv ZSGSRD 29991
17-03-17 20:21:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.968 -07 000000478 INF: FPGA: Recv ZSGSRD 29997
17-03-17 20:21:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.978 -07 000000431 INF: FPGA: Recv ZSGSRD 29985
17-03-17 20:21:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.988 -07 000000551 INF: FPGA: Recv ZSGSRD 29986
17-03-17 20:21:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:56.998 -07 000000478 INF: FPGA: Recv ZSGSRD 29978
17-03-17 20:21:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.008 -07 000000431 INF: FPGA: Recv ZSGSRD 29983
17-03-17 20:21:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:57.018 -07 000000438 INF: FPGA: Recv ZPIEZORD 25743
17-03-17 20:21:57.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.3 V.
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29986 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29985 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29978 (-132.1 uncal um), Max = 29997 (-132.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29986, posNoise = 11, negNoise = 8
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: After move to -0.132964, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:21:57.028 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:21:57.078 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:21:57.078 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:21:57.078 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.132959777293979. ----------
17-03-17 20:21:57.078 -07 000000610 INF: Cycle	37	Tile	5	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:21:57.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-17 20:21:57.078 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.132960 mm, distance = 0.81 um
17-03-17 20:21:57.078 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-17 20:21:57.078 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:21:57.088 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:21:57.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:57.088 -07 000000551 INF: FPGA: Recv ZDACR 28869
17-03-17 20:21:57.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:21:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.248 -07 000000501 INF: FPGA: Recv ZSGSRD 29864
17-03-17 20:21:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:21:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.258 -07 000000551 INF: FPGA: Recv ZSGSRD 29868
17-03-17 20:21:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.268 -07 000000501 INF: FPGA: Recv ZSGSRD 29865
17-03-17 20:21:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.278 -07 000000476 INF: FPGA: Recv ZSGSRD 29865
17-03-17 20:21:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:21:57.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29860
17-03-17 20:21:57.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.298 -07 000000448 INF: FPGA: Recv ZSGSRD 29860
17-03-17 20:21:57.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.308 -07 000000476 INF: FPGA: Recv ZSGSRD 29854
17-03-17 20:21:57.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.318 -07 000000448 INF: FPGA: Recv ZSGSRD 29862
17-03-17 20:21:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29860
17-03-17 20:21:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:21:57.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29865
17-03-17 20:21:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:21:57.348 -07 000000448 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 20:21:57.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:21:57.358 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.4 V.
17-03-17 20:21:57.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29862 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29863 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29868 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:21:57.358 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29862, posNoise = 6, negNoise = 8
17-03-17 20:21:57.358 -07 000000610 INF: Z Motor: After move to -0.132154, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:21:57.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:21:57.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:21:57.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:21:57.358 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:21:57.358 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:21:57.358 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:21:57.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:21:57.358 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:21:57.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:21:57.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:21:57.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:21:57.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:21:57.358 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:21:57.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:21:57.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:21:57.368 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:21:57.368 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:21:57.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:21:57.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:21:57.378 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:21:57.378 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:21:57.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29046 150\n [Camera]
17-03-17 20:21:57.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:21:57.988 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:21:57.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:21:57.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:57.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:57.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) start.
17-03-17 20:21:57.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:21:57.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:21:57.998 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:57.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:57.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) start.
17-03-17 20:21:58.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 798
17-03-17 20:21:58.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:21:58.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:21:58.368 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:21:58.368 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:58.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:21:58.368 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:21:58.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:58.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:58.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:21:58.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:21:58.388 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:21:58.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:21:58.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:21:58.538 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:21:58.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:21:58.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:21:58.648 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:21:58.658 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:21:58.658 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:21:58.658 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:21:58.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:21:58.728 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:21:58.728 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:21:58.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29046 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:21:58.728 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132638
17-03-17 20:21:58.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13264 mm
17-03-17 20:21:58.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:21:58.728 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28975, sync = True, waitForSettling = False)
17-03-17 20:21:58.728 -07 000000623 INF: Z Motor: Moving to -0.132639 mm, started at -0.132163 mm, distance = -0.48 um
17-03-17 20:21:58.728 -07 000000623 INF: FPGA: Xmit ZDACW 28975\n [Z Motor]
17-03-17 20:21:58.728 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:21:58.728 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 20:21:58.738 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:58.738 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:21:58.738 -07 000000623 INF: FPGA: 'ZDACW 28975' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:21:58.738 -07 000000501 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:21:58.748 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:21:58.748 -07 000000433 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:58.748 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:21:58.748 -07 000000433 INF: Y Motor: Moving 1340 steps-15
17-03-17 20:21:58.748 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:21:58.748 -07 000000501 INF: FPGA: Recv ZDACR 28975
17-03-17 20:21:58.758 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:21:58.758 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:21:58.758 -07 000000623 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:21:58.958 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.994908,
17-03-17 20:21:59.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:21:59.058 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:21:59.058 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:59.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:21:59.058 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:21:59.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:21:59.058 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:59.058 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:21:59.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:21:59.068 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:21:59.128 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:21:59.128 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:21:59.168 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:21:59.168 -07 000000541 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:21:59.178 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:21:59.178 -07 000000433 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:21:59.178 -07 000000433 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 20:21:59.178 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 20:22:00.128 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:00.128 -07 000000476 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:22:00.138 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:00.138 -07 000000433 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:00.148 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:00.148 -07 000000433 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:00.148 -07 000000433 INF: Y Motor: Moved to 64.0576 after 1418 ms (table move)
17-03-17 20:22:00.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132639 mm (DAC = 28975)
17-03-17 20:22:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.158 -07 000000476 INF: FPGA: Recv ZSGSRD 29936
17-03-17 20:22:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:22:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29947
17-03-17 20:22:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:22:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.168 -07 000000415 INF: FPGA: Recv ZSGSRD 29938
17-03-17 20:22:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.178 -07 000000476 INF: FPGA: Recv ZSGSRD 29935
17-03-17 20:22:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.188 -07 000000433 INF: FPGA: Recv ZSGSRD 29940
17-03-17 20:22:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.198 -07 000000476 INF: FPGA: Recv ZSGSRD 29940
17-03-17 20:22:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29941
17-03-17 20:22:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.218 -07 000000433 INF: FPGA: Recv ZSGSRD 29932
17-03-17 20:22:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29930
17-03-17 20:22:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29940
17-03-17 20:22:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:00.248 -07 000000415 INF: FPGA: Recv ZPIEZORD 25635
17-03-17 20:22:00.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.4 V.
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29938 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29939 (-131.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29930 (-131.8 uncal um), Max = 29947 (-131.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29938, posNoise = 9, negNoise = 8
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: After move to -0.132639, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 102 ms (allowed 150 ms), total time = 1523 ms
17-03-17 20:22:00.258 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:00.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 20:22:00.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:00.308 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.132651415111175. ----------
17-03-17 20:22:00.308 -07 000000610 INF: Cycle	37	Tile	6	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:00.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28798, sync = True, waitForSettling = True)
17-03-17 20:22:00.308 -07 000000610 INF: Z Motor: Moving to -0.131829 mm, started at -0.132651 mm, distance = 0.82 um
17-03-17 20:22:00.308 -07 000000610 INF: FPGA: Xmit ZDACW 28798\n [Z Motor]
17-03-17 20:22:00.308 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:22:00.318 -07 000000610 INF: FPGA: 'ZDACW 28798' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:00.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:00.318 -07 000000433 INF: FPGA: Recv ZDACR 28798
17-03-17 20:22:00.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.478 -07 000000415 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:22:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.488 -07 000000433 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:22:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.498 -07 000000433 INF: FPGA: Recv ZSGSRD 29812
17-03-17 20:22:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29807
17-03-17 20:22:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29816
17-03-17 20:22:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:22:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.538 -07 000000415 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:22:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29804
17-03-17 20:22:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.558 -07 000000476 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:22:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:00.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29814
17-03-17 20:22:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:00.578 -07 000000476 INF: FPGA: Recv ZPIEZORD 25485
17-03-17 20:22:00.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:00.588 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.5 V.
17-03-17 20:22:00.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29810 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29804 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:00.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29810, posNoise = 6, negNoise = 6
17-03-17 20:22:00.588 -07 000000610 INF: Z Motor: After move to -0.131829, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:00.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:22:00.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:00.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:00.588 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:00.588 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:00.588 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:00.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:00.588 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:00.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:00.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:00.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:00.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:00.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:00.598 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:00.598 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:00.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:00.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:00.608 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:22:00.608 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:00.608 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:22:00.608 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:00.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28975 150\n [Camera]
17-03-17 20:22:00.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:01.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:01.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:01.228 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:01.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:01.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:22:01.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:01.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:01.228 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:01.228 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:01.228 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 20:22:01.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28975 798
17-03-17 20:22:01.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:01.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:22:01.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:22:01.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:01.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:22:01.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:22:01.608 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:01.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:01.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:01.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:01.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:22:01.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:01.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:01.768 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:01.768 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:01.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) start.
17-03-17 20:22:01.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:01.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:01.768 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:01.888 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:01.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:01.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:22:01.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:01.958 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:01.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28975 150' command took 2 ms to send, 1336 ms to get response, and 1346 ms overall
17-03-17 20:22:01.958 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132445
17-03-17 20:22:01.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13245 mm
17-03-17 20:22:01.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:01.968 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:22:01.968 -07 000000433 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 20:22:01.968 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:01.968 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 28933, sync = True, waitForSettling = False)
17-03-17 20:22:01.968 -07 000000415 INF: Z Motor: Moving to -0.132447 mm, started at -0.131829 mm, distance = -0.62 um
17-03-17 20:22:01.968 -07 000000478 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:22:01.978 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:01.978 -07 000000433 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:01.978 -07 000000433 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:01.978 -07 000000433 INF: Y Motor: Moving 1336 steps-10
17-03-17 20:22:01.978 -07 000000415 INF: FPGA: Xmit ZDACW 28933\n [Z Motor]
17-03-17 20:22:01.978 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:22:01.988 -07 000000415 INF: FPGA: 'ZDACW 28933' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:22:01.988 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:01.988 -07 000000012 INF: FPGA: Recv ZDACR 28933
17-03-17 20:22:01.998 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:01.998 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:01.998 -07 000000415 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:22:02.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:22:02.148 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:22:02.148 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:02.148 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:02.148 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:22:02.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:22:02.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:22:02.268 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:02.268 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:02.268 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 20:22:02.368 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:22:02.368 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:22:02.408 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:02.408 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:22:02.418 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:02.418 -07 000000433 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:02.418 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:22:02.418 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.098 mm/sec
17-03-17 20:22:03.368 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:03.368 -07 000000480 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:22:03.378 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:03.378 -07 000000433 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:03.398 -07 000000433 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:03.398 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:03.398 -07 000000433 INF: Y Motor: Moved to 64.8794 after 1432 ms (table move)
17-03-17 20:22:03.398 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132447 mm (DAC = 28933)
17-03-17 20:22:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29901
17-03-17 20:22:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.408 -07 000000433 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:22:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.418 -07 000000626 INF: FPGA: Recv ZSGSRD 29897
17-03-17 20:22:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29914
17-03-17 20:22:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.438 -07 000000433 INF: FPGA: Recv ZSGSRD 29915
17-03-17 20:22:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.448 -07 000000433 INF: FPGA: Recv ZSGSRD 29912
17-03-17 20:22:03.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.458 -07 000000433 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:22:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.468 -07 000000626 INF: FPGA: Recv ZSGSRD 29903
17-03-17 20:22:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.478 -07 000000626 INF: FPGA: Recv ZSGSRD 29907
17-03-17 20:22:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.488 -07 000000480 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:22:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:03.498 -07 000000476 INF: FPGA: Recv ZPIEZORD 25614
17-03-17 20:22:03.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -9.4 V.
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29906 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29897 (-131.6 uncal um), Max = 29915 (-131.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29906, posNoise = 9, negNoise = 9
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: After move to -0.132447, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:22:03.508 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:03.558 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:22:03.558 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:03.558 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.132445840322638. ----------
17-03-17 20:22:03.558 -07 000000610 INF: Cycle	37	Tile	7	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:03.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28756, sync = True, waitForSettling = True)
17-03-17 20:22:03.558 -07 000000610 INF: Z Motor: Moving to -0.131637 mm, started at -0.132446 mm, distance = 0.81 um
17-03-17 20:22:03.558 -07 000000610 INF: FPGA: Xmit ZDACW 28756\n [Z Motor]
17-03-17 20:22:03.558 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:22:03.568 -07 000000610 INF: FPGA: 'ZDACW 28756' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:03.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:03.568 -07 000000431 INF: FPGA: Recv ZDACR 28756
17-03-17 20:22:03.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.728 -07 000000478 INF: FPGA: Recv ZSGSRD 29778
17-03-17 20:22:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:03.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.738 -07 000000478 INF: FPGA: Recv ZSGSRD 29782
17-03-17 20:22:03.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29784
17-03-17 20:22:03.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29787
17-03-17 20:22:03.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.768 -07 000000478 INF: FPGA: Recv ZSGSRD 29780
17-03-17 20:22:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29781
17-03-17 20:22:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29779
17-03-17 20:22:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.798 -07 000000478 INF: FPGA: Recv ZSGSRD 29778
17-03-17 20:22:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:03.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29783
17-03-17 20:22:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:03.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:04.738 -07 000000462 INF: FPGA: Recv ZSGSRD 29782
17-03-17 20:22:04.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 910 ms to get response, and 920 ms overall
17-03-17 20:22:04.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:04.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 25491
17-03-17 20:22:04.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:04.748 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.4 V.
17-03-17 20:22:04.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29781 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29778 (-130.8 uncal um), Max = 29787 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:22:04.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29781, posNoise = 6, negNoise = 3
17-03-17 20:22:04.748 -07 000000610 INF: Z Motor: After move to -0.131637, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:04.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 1184 ms)
17-03-17 20:22:04.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:04.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:04.748 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:04.748 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:04.748 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:04.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:04.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:04.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:04.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:04.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:04.768 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:22:04.768 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:22:04.768 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:04.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:22:04.778 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:04.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28933 150\n [Camera]
17-03-17 20:22:04.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:05.048 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.001704,
17-03-17 20:22:05.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:05.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:05.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:05.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:05.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:05.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:05.398 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:05.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:22:05.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:05.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:22:05.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28933 798
17-03-17 20:22:05.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:05.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:22:05.778 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:22:05.778 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:05.778 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:22:05.778 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:22:05.778 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:05.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:05.778 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:05.778 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:05.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:22:05.938 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:05.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:05.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:05.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:05.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 20:22:05.938 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:05.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:05.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:05.938 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:05.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) start.
17-03-17 20:22:06.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:06.128 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:06.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28933 150' command took 2 ms to send, 1335 ms to get response, and 1348 ms overall
17-03-17 20:22:06.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:22:06.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131642813804918. ------
17-03-17 20:22:06.138 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:06.138 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13819 mm
17-03-17 20:22:06.138 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:06.148 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:06.148 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:22:06.148 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:22:06.148 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:22:06.148 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 20:22:06.148 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30189, sync = True, waitForSettling = False)
17-03-17 20:22:06.148 -07 000000415 INF: Z Motor: Moving to -0.138196 mm, started at -0.131643 mm, distance = -6.55 um
17-03-17 20:22:06.158 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:06.158 -07 000000551 INF: FPGA: Recv YRDPOS 132874
17-03-17 20:22:06.168 -07 000000415 INF: FPGA: Xmit ZDACW 30189\n [Z Motor]
17-03-17 20:22:06.168 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:22:06.168 -07 000000012 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:06.168 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:22:06.168 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:06.168 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:22:06.178 -07 000000415 INF: FPGA: 'ZDACW 30189' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:22:06.178 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:06.178 -07 000000438 INF: FPGA: Recv ZDACR 30189
17-03-17 20:22:06.188 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:06.188 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:06.188 -07 000000415 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:22:06.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:22:06.318 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:22:06.318 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:06.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:22:06.318 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:22:06.318 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:06.318 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:06.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:06.328 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:22:06.328 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:22:06.348 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:22:06.348 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:22:06.558 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:22:06.558 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 20:22:06.598 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:06.598 -07 000000551 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:22:06.608 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:22:06.608 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:06.608 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:22:06.608 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.168 mm/sec
17-03-17 20:22:07.558 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:07.738 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:07.738 -07 000000501 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:22:07.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:07.738 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 171 ms to get response, and 181 ms overall
17-03-17 20:22:07.738 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:07.768 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:07.768 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:07.768 -07 000000012 INF: Y Motor: Moved to 65.7148 after 1622 ms (table move)
17-03-17 20:22:07.778 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138196 mm (DAC = 30189)
17-03-17 20:22:07.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.778 -07 000000415 INF: FPGA: Recv ZSGSRD 30802
17-03-17 20:22:07.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:22:07.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.788 -07 000000541 INF: FPGA: Recv ZSGSRD 30803
17-03-17 20:22:07.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30801
17-03-17 20:22:07.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.808 -07 000000541 INF: FPGA: Recv ZSGSRD 30803
17-03-17 20:22:07.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30799
17-03-17 20:22:07.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.828 -07 000000541 INF: FPGA: Recv ZSGSRD 30803
17-03-17 20:22:07.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.838 -07 000000623 INF: FPGA: Recv ZSGSRD 30798
17-03-17 20:22:07.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.848 -07 000000012 INF: FPGA: Recv ZSGSRD 30808
17-03-17 20:22:07.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.858 -07 000000501 INF: FPGA: Recv ZSGSRD 30804
17-03-17 20:22:07.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:07.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30810
17-03-17 20:22:07.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.878 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:07.878 -07 000000551 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 20:22:07.888 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -8.8 V.
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30803 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30803 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30798 (-137.4 uncal um), Max = 30810 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30803, posNoise = 7, negNoise = 5
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: After move to -0.138196, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: Settle wait time = 1625 ms, measure time = 109 ms (allowed 150 ms), total time = 1734 ms
17-03-17 20:22:07.888 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:07.938 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1794 ms
17-03-17 20:22:07.938 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:07.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:07.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:07.938 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:07.938 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:22:07.938 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:07.938 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:07.938 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:07.938 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:22:07.948 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:22:07.948 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:22:07.948 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:22:07.948 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:22:07.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:22:07.998 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:22:08.198 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:22:08.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:22:08.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:22:08.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 20:22:08.238 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:22:08.238 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:22:08.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:22:08.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:22:08.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:08.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:22:08.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:22:08.338 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:08.338 -07 000000438 INF: Autofocus start
17-03-17 20:22:08.338 -07 000000438 INF: MeasureProfile start
17-03-17 20:22:08.348 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:08.348 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 2 ms to get response, and 8 ms overall
17-03-17 20:22:08.348 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:22:08.348 -07 000000438 INF: MeasureProfile done
17-03-17 20:22:08.348 -07 000000438 INF: X=35  Z correction [um]=0.1444153
17-03-17 20:22:08.348 -07 000000438 INF: Autofocus finished
17-03-17 20:22:08.548 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:22:08.548 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:22:08.548 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138208358613798. ----------
17-03-17 20:22:08.558 -07 000000610 INF: Cycle	37	Tile	8	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:08.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28733, sync = True, waitForSettling = True)
17-03-17 20:22:08.558 -07 000000610 INF: Z Motor: Moving to -0.131531 mm, started at -0.138208 mm, distance = 6.68 um
17-03-17 20:22:08.558 -07 000000610 INF: FPGA: Xmit ZDACW 28733\n [Z Motor]
17-03-17 20:22:08.558 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:22:08.568 -07 000000610 INF: FPGA: 'ZDACW 28733' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:08.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:08.568 -07 000000415 INF: FPGA: Recv ZDACR 28733
17-03-17 20:22:08.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.728 -07 000000462 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:22:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.738 -07 000000415 INF: FPGA: Recv ZSGSRD 29762
17-03-17 20:22:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.748 -07 000000541 INF: FPGA: Recv ZSGSRD 29758
17-03-17 20:22:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.758 -07 000000623 INF: FPGA: Recv ZSGSRD 29762
17-03-17 20:22:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:22:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29767
17-03-17 20:22:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29764
17-03-17 20:22:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:22:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.808 -07 000000623 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:22:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:08.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:22:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:08.828 -07 000000415 INF: FPGA: Recv ZPIEZORD 25453
17-03-17 20:22:08.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:08.838 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.5 V.
17-03-17 20:22:08.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29758 (-130.7 uncal um), Max = 29769 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:08.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 5, negNoise = 6
17-03-17 20:22:08.838 -07 000000610 INF: Z Motor: After move to -0.131531, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:08.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:22:08.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:08.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:08.838 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:08.838 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:08.838 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:08.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:08.838 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:08.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:08.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:22:08.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:08.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:08.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:08.848 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:08.848 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:08.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:08.848 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:08.848 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:08.848 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:22:08.858 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:22:08.858 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:22:08.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28909 150\n [Camera]
17-03-17 20:22:09.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:09.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:09.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:09.468 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:09.468 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:09.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1122570400, 0x0, 391868352) start.
17-03-17 20:22:09.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:09.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:09.478 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:09.478 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:09.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:22:09.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28909 798
17-03-17 20:22:09.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:09.868 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1122570400, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:22:09.868 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:22:09.868 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:09.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:22:09.878 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:22:09.878 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:09.878 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:09.878 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:22:09.878 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:09.888 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:22:10.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:10.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:10.018 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:10.018 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:10.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:22:10.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:10.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:10.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:10.018 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:10.018 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:22:10.198 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:10.208 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:10.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28909 150' command took 2 ms to send, 1340 ms to get response, and 1346 ms overall
17-03-17 20:22:10.208 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131873
17-03-17 20:22:10.208 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13187 mm
17-03-17 20:22:10.208 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:10.208 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:22:10.208 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 20:22:10.208 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:10.208 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28808, sync = True, waitForSettling = False)
17-03-17 20:22:10.208 -07 000000547 INF: Z Motor: Moving to -0.131875 mm, started at -0.131534 mm, distance = -0.34 um
17-03-17 20:22:10.208 -07 000000623 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:22:10.218 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:10.218 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:10.218 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:10.218 -07 000000012 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:22:10.218 -07 000000547 INF: FPGA: Xmit ZDACW 28808\n [Z Motor]
17-03-17 20:22:10.218 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:22:10.228 -07 000000547 INF: FPGA: 'ZDACW 28808' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:22:10.228 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:10.228 -07 000000480 INF: FPGA: Recv ZDACR 28808
17-03-17 20:22:10.238 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:10.238 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:10.238 -07 000000547 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 20:22:10.408 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.005817,
17-03-17 20:22:10.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 501 ms.
17-03-17 20:22:10.518 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 20:22:10.518 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:10.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 499 ms.
17-03-17 20:22:10.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 20:22:10.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:10.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:10.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:22:10.528 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:22:10.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 20:22:10.608 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:22:10.608 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:22:10.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:10.648 -07 000000541 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:22:10.658 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:10.658 -07 000000012 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:10.658 -07 000000012 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:22:10.658 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.105 mm/sec
17-03-17 20:22:11.608 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:11.608 -07 000000429 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:22:11.618 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.618 -07 000000012 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:11.638 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:11.638 -07 000000012 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:11.638 -07 000000012 INF: Y Motor: Moved to 66.5400 after 1426 ms (table move)
17-03-17 20:22:11.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131875 mm (DAC = 28808)
17-03-17 20:22:11.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:22:11.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:11.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:22:11.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:22:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.668 -07 000000478 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:22:11.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.678 -07 000000626 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:22:11.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:22:11.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.698 -07 000000012 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:22:11.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.708 -07 000000415 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:22:11.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:22:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.728 -07 000000433 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:22:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:11.738 -07 000000478 INF: FPGA: Recv ZPIEZORD 25549
17-03-17 20:22:11.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.4 V.
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29816 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29816 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29809 (-131.0 uncal um), Max = 29822 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29816, posNoise = 6, negNoise = 7
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: After move to -0.131875, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:22:11.748 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:11.778 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:11.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:11.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:22:11.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:11.798 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.13186766122988. ----------
17-03-17 20:22:11.798 -07 000000610 INF: Cycle	37	Tile	9	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:11.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28631, sync = True, waitForSettling = True)
17-03-17 20:22:11.798 -07 000000610 INF: Z Motor: Moving to -0.131064 mm, started at -0.131868 mm, distance = 0.80 um
17-03-17 20:22:11.798 -07 000000610 INF: FPGA: Xmit ZDACW 28631\n [Z Motor]
17-03-17 20:22:11.798 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:22:11.808 -07 000000610 INF: FPGA: 'ZDACW 28631' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:11.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:11.808 -07 000000429 INF: FPGA: Recv ZDACR 28631
17-03-17 20:22:11.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.968 -07 000000478 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:22:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.978 -07 000000478 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:22:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.988 -07 000000480 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:22:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:11.998 -07 000000547 INF: FPGA: Recv ZSGSRD 29688
17-03-17 20:22:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.008 -07 000000480 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:22:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.018 -07 000000541 INF: FPGA: Recv ZSGSRD 29689
17-03-17 20:22:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.028 -07 000000541 INF: FPGA: Recv ZSGSRD 29685
17-03-17 20:22:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.038 -07 000000480 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:22:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:22:12.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:12.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:22:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:12.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 25386
17-03-17 20:22:12.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:12.078 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.5 V.
17-03-17 20:22:12.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29691 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29691 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29685 (-130.2 uncal um), Max = 29695 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:12.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29691, posNoise = 4, negNoise = 6
17-03-17 20:22:12.078 -07 000000610 INF: Z Motor: After move to -0.131064, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:12.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:22:12.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:12.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:12.078 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:12.078 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:12.078 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:12.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:12.078 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:12.078 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:12.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:22:12.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:12.078 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:22:12.078 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:12.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:12.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:12.078 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:12.078 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:12.088 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:12.088 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:12.088 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:22:12.088 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:22:12.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28808 150\n [Camera]
17-03-17 20:22:12.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:12.708 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:12.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:12.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:12.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:12.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:12.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:12.718 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:12.718 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:22:12.718 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:12.718 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:22:12.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28808 798
17-03-17 20:22:13.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:13.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:22:13.098 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:22:13.098 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:13.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:22:13.098 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:22:13.098 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:13.098 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:22:13.098 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:22:13.098 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:22:13.108 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:22:13.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:13.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:13.248 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:13.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:13.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:13.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:13.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:13.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) start.
17-03-17 20:22:13.268 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:13.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) start.
17-03-17 20:22:13.438 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:13.438 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:13.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28808 150' command took 2 ms to send, 1338 ms to get response, and 1346 ms overall
17-03-17 20:22:13.448 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131899
17-03-17 20:22:13.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13190 mm
17-03-17 20:22:13.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:13.448 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 28813, sync = True, waitForSettling = False)
17-03-17 20:22:13.448 -07 000000480 INF: Z Motor: Moving to -0.131897 mm, started at -0.131065 mm, distance = -0.83 um
17-03-17 20:22:13.448 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:22:13.448 -07 000000547 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 20:22:13.448 -07 000000480 INF: FPGA: Xmit ZDACW 28813\n [Z Motor]
17-03-17 20:22:13.458 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:13.638 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:22:13.638 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:22:13.638 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:13.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:22:13.638 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:22:13.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:13.638 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:13.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:22:13.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:13.648 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:22:13.648 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:22:13.648 -07 000000541 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:22:13.648 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 189 ms to get response, and 203 ms overall
17-03-17 20:22:13.648 -07 000000547 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:13.648 -07 000000547 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:13.658 -07 000000547 INF: Y Motor: Moving 1348 steps-26
17-03-17 20:22:13.658 -07 000000480 INF: FPGA: 'ZDACW 28813' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 20:22:13.658 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:13.668 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:13.668 -07 000000429 INF: FPGA: Recv ZDACR 28813
17-03-17 20:22:13.678 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:22:13.678 -07 000000480 INF: Z Motor: MoveAbsStepped took 224 ms (did NOT wait for settling yet))
17-03-17 20:22:14.028 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:22:14.028 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:22:14.068 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:14.068 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:22:14.078 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:14.078 -07 000000547 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:14.078 -07 000000547 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 20:22:14.078 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 20:22:15.028 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:15.028 -07 000000541 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:22:15.038 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:15.038 -07 000000547 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:15.058 -07 000000547 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:15.058 -07 000000547 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:22:15.058 -07 000000547 INF: Y Motor: Moved to 67.3730 after 1608 ms (table move)
17-03-17 20:22:15.058 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131897 mm (DAC = 28813)
17-03-17 20:22:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.058 -07 000000501 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:22:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.068 -07 000000541 INF: FPGA: Recv ZSGSRD 29816
17-03-17 20:22:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.078 -07 000000476 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:22:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.088 -07 000000429 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:22:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:22:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.108 -07 000000476 INF: FPGA: Recv ZSGSRD 29828
17-03-17 20:22:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:22:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:22:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:22:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.148 -07 000000547 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:22:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:15.158 -07 000000476 INF: FPGA: Recv ZPIEZORD 25546
17-03-17 20:22:15.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.4 V.
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29820 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29820 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29815 (-131.1 uncal um), Max = 29828 (-131.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29820, posNoise = 8, negNoise = 5
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: After move to -0.131897, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: Settle wait time = 1610 ms, measure time = 105 ms (allowed 150 ms), total time = 1715 ms
17-03-17 20:22:15.168 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:15.218 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1766 ms
17-03-17 20:22:15.218 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:15.218 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.131893358078447. ----------
17-03-17 20:22:15.218 -07 000000610 INF: Cycle	37	Tile	10	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:15.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28637, sync = True, waitForSettling = True)
17-03-17 20:22:15.218 -07 000000610 INF: Z Motor: Moving to -0.131092 mm, started at -0.131893 mm, distance = 0.80 um
17-03-17 20:22:15.218 -07 000000610 INF: FPGA: Xmit ZDACW 28637\n [Z Motor]
17-03-17 20:22:15.218 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:22:15.228 -07 000000610 INF: FPGA: 'ZDACW 28637' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:15.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:15.228 -07 000000501 INF: FPGA: Recv ZDACR 28637
17-03-17 20:22:15.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:22:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:22:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.408 -07 000000476 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:22:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:22:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.428 -07 000000501 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:22:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:22:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:22:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:22:15.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.468 -07 000000478 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:22:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:15.478 -07 000000429 INF: FPGA: Recv ZSGSRD 29703
17-03-17 20:22:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:15.488 -07 000000501 INF: FPGA: Recv ZPIEZORD 25439
17-03-17 20:22:15.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:15.498 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.4 V.
17-03-17 20:22:15.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29696 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29690 (-130.3 uncal um), Max = 29703 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:15.498 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29696, posNoise = 7, negNoise = 6
17-03-17 20:22:15.498 -07 000000610 INF: Z Motor: After move to -0.131092, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:15.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:22:15.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:15.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:15.498 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:15.498 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:15.498 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:15.498 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:15.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:15.498 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:15.498 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:15.498 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:15.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:15.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:15.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:15.508 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:15.508 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:22:15.508 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:15.518 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:22:15.518 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:15.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:15.518 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:15.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28813 150\n [Camera]
17-03-17 20:22:15.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:15.878 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.023489,
17-03-17 20:22:16.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:16.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:16.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:16.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:16.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:16.148 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:16.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1122570400, 0x0, 391868352) start.
17-03-17 20:22:16.148 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:16.148 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:16.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:22:16.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1122570400, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:22:16.538 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:22:16.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:16.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:16.538 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:22:16.538 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:22:16.538 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:22:16.538 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:16.538 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:16.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28813 798
17-03-17 20:22:16.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:16.548 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:22:16.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:16.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:16.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:16.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:16.788 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:16.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:16.788 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:16.798 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:16.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:22:16.798 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:16.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:22:17.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:22:17.168 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:22:17.168 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:17.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:22:17.168 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:22:17.168 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:17.178 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:17.178 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:17.178 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 20:22:17.178 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:22:17.188 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:17.188 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:17.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28813 150' command took 2 ms to send, 1654 ms to get response, and 1665 ms overall
17-03-17 20:22:17.188 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131511
17-03-17 20:22:17.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13151 mm
17-03-17 20:22:17.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:17.188 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:22:17.188 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 20:22:17.188 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:17.198 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28729, sync = True, waitForSettling = False)
17-03-17 20:22:17.198 -07 000000626 INF: Z Motor: Moving to -0.131513 mm, started at -0.131097 mm, distance = -0.42 um
17-03-17 20:22:17.208 -07 000000626 INF: FPGA: Xmit ZDACW 28729\n [Z Motor]
17-03-17 20:22:18.038 -07 000000438 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:22:18.038 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:22:18.038 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 830 ms to get response, and 840 ms overall
17-03-17 20:22:18.038 -07 000000626 INF: FPGA: 'ZDACW 28729' command took 0 ms to send, 820 ms to get response, and 839 ms overall
17-03-17 20:22:18.038 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:18.038 -07 000000501 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:18.038 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:18.038 -07 000000501 INF: Y Motor: Moving 1343 steps-21
17-03-17 20:22:18.038 -07 000000438 INF: FPGA: Recv ZDACR 28729
17-03-17 20:22:18.048 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:18.048 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:18.048 -07 000000626 INF: Z Motor: MoveAbsStepped took 849 ms (did NOT wait for settling yet))
17-03-17 20:22:18.418 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:22:18.418 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 20:22:18.458 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:18.458 -07 000000438 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:22:18.468 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:18.468 -07 000000501 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:18.468 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:22:18.468 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 20:22:19.418 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:19.418 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:22:19.428 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:19.428 -07 000000501 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:19.448 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:19.448 -07 000000501 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:19.448 -07 000000501 INF: Y Motor: Moved to 68.2061 after 2250 ms (table move)
17-03-17 20:22:19.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131513 mm (DAC = 28729)
17-03-17 20:22:19.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29760
17-03-17 20:22:19.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:22:19.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:22:19.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29762
17-03-17 20:22:19.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29761
17-03-17 20:22:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.488 -07 000000433 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:22:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29756
17-03-17 20:22:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29761
17-03-17 20:22:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:22:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:22:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.538 -07 000000623 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:22:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:19.548 -07 000000626 INF: FPGA: Recv ZPIEZORD 25501
17-03-17 20:22:19.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.4 V.
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29762 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29762 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29756 (-130.7 uncal um), Max = 29766 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29762, posNoise = 4, negNoise = 6
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: After move to -0.131513, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: Settle wait time = 2252 ms, measure time = 108 ms (allowed 150 ms), total time = 2360 ms
17-03-17 20:22:19.558 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:19.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2412 ms
17-03-17 20:22:19.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:19.608 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.131520753774225. ----------
17-03-17 20:22:19.608 -07 000000610 INF: Cycle	37	Tile	11	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:19.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28552, sync = True, waitForSettling = True)
17-03-17 20:22:19.608 -07 000000610 INF: Z Motor: Moving to -0.130703 mm, started at -0.131521 mm, distance = 0.82 um
17-03-17 20:22:19.608 -07 000000610 INF: FPGA: Xmit ZDACW 28552\n [Z Motor]
17-03-17 20:22:19.608 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:22:19.618 -07 000000610 INF: FPGA: 'ZDACW 28552' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:22:19.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:19.618 -07 000000438 INF: FPGA: Recv ZDACR 28552
17-03-17 20:22:19.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29636
17-03-17 20:22:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.788 -07 000000626 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:22:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29634
17-03-17 20:22:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29635
17-03-17 20:22:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.818 -07 000000462 INF: FPGA: Recv ZSGSRD 29636
17-03-17 20:22:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.828 -07 000000626 INF: FPGA: Recv ZSGSRD 29635
17-03-17 20:22:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29639
17-03-17 20:22:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.848 -07 000000415 INF: FPGA: Recv ZSGSRD 29636
17-03-17 20:22:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.858 -07 000000462 INF: FPGA: Recv ZSGSRD 29638
17-03-17 20:22:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:19.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29637
17-03-17 20:22:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:19.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 25331
17-03-17 20:22:19.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:19.888 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.5 V.
17-03-17 20:22:19.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29637 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29636 (-129.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29634 (-129.9 uncal um), Max = 29642 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:22:19.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29637, posNoise = 5, negNoise = 3
17-03-17 20:22:19.888 -07 000000610 INF: Z Motor: After move to -0.130703, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:19.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 20:22:19.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:19.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:19.888 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:19.888 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:19.888 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:19.888 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:19.888 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:19.888 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:19.888 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:22:19.888 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:19.888 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:19.888 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:19.888 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:19.898 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:19.898 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:19.898 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:19.908 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:22:19.908 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:22:19.908 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:22:19.908 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:19.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28729 150\n [Camera]
17-03-17 20:22:20.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:20.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:20.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:20.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:20.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:20.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:20.528 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:20.538 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:20.538 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) start.
17-03-17 20:22:20.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:20.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) start.
17-03-17 20:22:20.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28729 798
17-03-17 20:22:20.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:20.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:22:20.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:22:20.928 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:20.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:22:20.928 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:22:20.928 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:20.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:20.938 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:20.938 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:22:20.938 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:22:21.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:21.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:21.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:21.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:21.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:21.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:21.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:22:21.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:22:21.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:22:21.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:21.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:22:21.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:22:22.238 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:22.238 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:22.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:22:22.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:22:22.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:22:22.628 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:22.628 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:22.638 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:22:22.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:22.648 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:22.648 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:22.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28729 150' command took 2 ms to send, 2720 ms to get response, and 2729 ms overall
17-03-17 20:22:22.648 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.011254,
17-03-17 20:22:22.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:22.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:22:22.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130717727256504. ------
17-03-17 20:22:22.658 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:23.238 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13741 mm
17-03-17 20:22:23.238 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:24.238 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:24.238 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1570 ms to get response, and 1584 ms overall
17-03-17 20:22:24.238 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:22:24.238 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 20:22:24.248 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:22:24.268 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:25.238 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30016, sync = True, waitForSettling = False)
17-03-17 20:22:25.238 -07 000000478 INF: Z Motor: Moving to -0.137404 mm, started at -0.130718 mm, distance = -6.69 um
17-03-17 20:22:25.238 -07 000000478 INF: FPGA: Xmit ZDACW 30016\n [Z Motor]
17-03-17 20:22:26.238 -07 000000541 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:22:26.238 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:22:26.238 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:22:26.238 -07 000000478 INF: FPGA: 'ZDACW 30016' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:22:26.238 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:26.238 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1960 ms to get response, and 1998 ms overall
17-03-17 20:22:26.238 -07 000000480 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:26.238 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:26.238 -07 000000480 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:22:26.238 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1980 ms to get response, and 1999 ms overall
17-03-17 20:22:26.238 -07 000000541 INF: FPGA: Recv ZDACR 30016
17-03-17 20:22:26.248 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:26.248 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:26.248 -07 000000478 INF: Z Motor: MoveAbsStepped took 1009 ms (did NOT wait for settling yet))
17-03-17 20:22:26.628 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:22:26.628 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 389 ms overall
17-03-17 20:22:26.658 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:26.658 -07 000000448 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:22:26.668 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:26.668 -07 000000480 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:26.668 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:22:26.668 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.145 mm/sec
17-03-17 20:22:26.778 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:27.618 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:27.618 -07 000000012 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:22:27.628 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:27.628 -07 000000480 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:27.648 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:27.648 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:22:27.648 -07 000000480 INF: Y Motor: Moved to 69.0283 after 3410 ms (table move)
17-03-17 20:22:27.648 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137404 mm (DAC = 30016)
17-03-17 20:22:27.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.648 -07 000000476 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:22:27.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:27.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30680
17-03-17 20:22:27.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.668 -07 000000448 INF: FPGA: Recv ZSGSRD 30675
17-03-17 20:22:27.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.678 -07 000000478 INF: FPGA: Recv ZSGSRD 30677
17-03-17 20:22:27.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.688 -07 000000480 INF: FPGA: Recv ZSGSRD 30674
17-03-17 20:22:27.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.698 -07 000000478 INF: FPGA: Recv ZSGSRD 30681
17-03-17 20:22:27.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.708 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.708 -07 000000415 INF: FPGA: Recv ZSGSRD 30684
17-03-17 20:22:27.718 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.718 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.718 -07 000000478 INF: FPGA: Recv ZSGSRD 30677
17-03-17 20:22:27.728 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.728 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30684
17-03-17 20:22:27.738 -07 000000547 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.738 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:27.738 -07 000000478 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:22:27.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.748 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:27.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 26718
17-03-17 20:22:27.758 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -8.7 V.
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30679 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30678 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30674 (-136.6 uncal um), Max = 30684 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30679, posNoise = 5, negNoise = 5
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: After move to -0.137404, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: Settle wait time = 2414 ms, measure time = 105 ms (allowed 150 ms), total time = 2519 ms
17-03-17 20:22:27.758 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:27.808 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4567 ms
17-03-17 20:22:27.808 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:27.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:27.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:27.808 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:27.808 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:27.808 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:22:27.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:27.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:27.808 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:22:27.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:27.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:22:27.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:22:27.818 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:22:27.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:22:27.868 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:22:28.068 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:22:28.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:22:28.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:22:28.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:22:28.108 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:22:28.108 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:22:28.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:22:28.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 20:22:28.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:28.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:22:28.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:22:28.208 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:28.208 -07 000000438 INF: Autofocus start
17-03-17 20:22:28.208 -07 000000438 INF: MeasureProfile start
17-03-17 20:22:28.208 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:28.218 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:28.218 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:22:28.238 -07 000000438 INF: MeasureProfile done
17-03-17 20:22:28.238 -07 000000438 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 20:22:28.238 -07 000000438 INF: Autofocus finished
17-03-17 20:22:28.418 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:22:28.418 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:22:28.418 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.137411756308219. ----------
17-03-17 20:22:28.418 -07 000000610 INF: Cycle	37	Tile	12	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:28.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-17 20:22:28.428 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.137412 mm, distance = 6.85 um
17-03-17 20:22:28.428 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-17 20:22:28.428 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:22:28.438 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:28.438 -07 000000547 INF: FPGA: Recv ZDACR 28522
17-03-17 20:22:28.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:28.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:28.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.598 -07 000000547 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:22:28.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:28.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.608 -07 000000626 INF: FPGA: Recv ZSGSRD 29621
17-03-17 20:22:28.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.618 -07 000000626 INF: FPGA: Recv ZSGSRD 29615
17-03-17 20:22:28.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:22:28.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:22:28.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.648 -07 000000480 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:22:28.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29614
17-03-17 20:22:28.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.668 -07 000000626 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:22:28.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.678 -07 000000626 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:22:28.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:28.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:22:28.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:28.698 -07 000000626 INF: FPGA: Recv ZPIEZORD 25329
17-03-17 20:22:28.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:28.708 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.4 V.
17-03-17 20:22:28.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29615 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29613 (-129.8 uncal um), Max = 29621 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:22:28.708 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29615, posNoise = 6, negNoise = 2
17-03-17 20:22:28.708 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:28.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:22:28.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:28.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:28.708 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:28.708 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:28.708 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:28.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:28.708 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:28.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:28.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:28.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:28.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:28.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:28.718 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:28.718 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:28.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:28.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:28.728 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:22:28.728 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:28.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:22:28.728 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:28.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28698 150\n [Camera]
17-03-17 20:22:28.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:29.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:29.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:29.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:29.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:29.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:29.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1056131176, 0x0, 391868352) start.
17-03-17 20:22:29.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:29.348 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:29.358 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:29.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1091553440, 0x0, 418435064) start.
17-03-17 20:22:29.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28698 798
17-03-17 20:22:29.688 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:29.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1056131176, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:22:29.728 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:22:29.728 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:29.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:29.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:22:29.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1091553440, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:22:29.738 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:22:29.738 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:29.738 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:22:29.748 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:22:29.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:29.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:29.888 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:29.888 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:29.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:29.888 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:29.888 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:29.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:22:29.888 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:29.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 20:22:30.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:30.078 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:30.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28698 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall
17-03-17 20:22:30.078 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.131082
17-03-17 20:22:30.078 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13108 mm
17-03-17 20:22:30.078 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:30.078 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:22:30.078 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 20:22:30.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:30.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:22:30.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:22:30.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:22:30.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:30.288 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:22:30.288 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:30.298 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:30.298 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:30.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:22:30.308 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:22:30.308 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28635, sync = True, waitForSettling = False)
17-03-17 20:22:30.308 -07 000000547 INF: Z Motor: Moving to -0.131083 mm, started at -0.130576 mm, distance = -0.51 um
17-03-17 20:22:30.308 -07 000000547 INF: FPGA: Xmit ZDACW 28635\n [Z Motor]
17-03-17 20:22:30.318 -07 000000480 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:22:30.318 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:22:30.318 -07 000000547 INF: FPGA: 'ZDACW 28635' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:22:30.318 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:30.318 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 231 ms overall
17-03-17 20:22:30.318 -07 000000429 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:30.318 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:30.318 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:22:30.318 -07 000000480 INF: FPGA: Recv ZDACR 28635
17-03-17 20:22:30.328 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:30.328 -07 000000547 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-17 20:22:30.328 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:30.708 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:22:30.708 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 388 ms overall
17-03-17 20:22:30.738 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:30.738 -07 000000547 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:22:30.748 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:30.748 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:30.748 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:22:30.748 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 20:22:31.618 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.96762,
17-03-17 20:22:31.698 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:31.698 -07 000000547 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:22:31.708 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.708 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:31.728 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:31.728 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:31.728 -07 000000429 INF: Y Motor: Moved to 69.8643 after 1643 ms (table move)
17-03-17 20:22:31.728 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131083 mm (DAC = 28635)
17-03-17 20:22:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:22:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:31.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.738 -07 000000429 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:22:31.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:22:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:22:31.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:22:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.778 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:31.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:22:31.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:31.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29689
17-03-17 20:22:31.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:22:31.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.808 -07 000000551 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:22:31.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:31.818 -07 000000551 INF: FPGA: Recv ZSGSRD 29687
17-03-17 20:22:31.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:31.828 -07 000000480 INF: FPGA: Recv ZPIEZORD 25428
17-03-17 20:22:31.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.4 V.
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29692 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29692 (-130.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29683 (-130.2 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29692, posNoise = 10, negNoise = 9
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: After move to -0.131083, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 105 ms (allowed 150 ms), total time = 1524 ms
17-03-17 20:22:31.838 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:31.888 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms
17-03-17 20:22:31.888 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:31.888 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.131071058924301. ----------
17-03-17 20:22:31.888 -07 000000610 INF: Cycle	37	Tile	13	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:31.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28458, sync = True, waitForSettling = True)
17-03-17 20:22:31.888 -07 000000610 INF: Z Motor: Moving to -0.130272 mm, started at -0.131071 mm, distance = 0.80 um
17-03-17 20:22:31.888 -07 000000610 INF: FPGA: Xmit ZDACW 28458\n [Z Motor]
17-03-17 20:22:31.888 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:22:31.898 -07 000000610 INF: FPGA: 'ZDACW 28458' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:31.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:31.898 -07 000000429 INF: FPGA: Recv ZDACR 28458
17-03-17 20:22:31.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:31.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.058 -07 000000623 INF: FPGA: Recv ZSGSRD 29566
17-03-17 20:22:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.068 -07 000000541 INF: FPGA: Recv ZSGSRD 29568
17-03-17 20:22:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29569
17-03-17 20:22:32.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.088 -07 000000541 INF: FPGA: Recv ZSGSRD 29573
17-03-17 20:22:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29564
17-03-17 20:22:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.108 -07 000000623 INF: FPGA: Recv ZSGSRD 29568
17-03-17 20:22:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29569
17-03-17 20:22:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29567
17-03-17 20:22:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29570
17-03-17 20:22:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:32.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29565
17-03-17 20:22:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:32.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:32.158 -07 000000429 INF: FPGA: Recv ZPIEZORD 25285
17-03-17 20:22:32.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:32.168 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.4 V.
17-03-17 20:22:32.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29568 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29568 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29564 (-129.5 uncal um), Max = 29573 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:22:32.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29568, posNoise = 5, negNoise = 4
17-03-17 20:22:32.168 -07 000000610 INF: Z Motor: After move to -0.130272, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:32.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:22:32.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:32.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:32.168 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:32.168 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:32.168 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:32.168 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:32.168 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:32.168 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:32.168 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:32.168 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:32.168 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:32.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:32.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:22:32.168 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:32.178 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:32.178 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:32.188 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:22:32.188 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:22:32.188 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:22:32.188 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:32.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28635 150\n [Camera]
17-03-17 20:22:32.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:32.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-17 20:22:32.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-17 20:22:32.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:32.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-17 20:22:32.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-17 20:22:32.808 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:32.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:32.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:22:32.818 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:32.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:22:32.998 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28635 798
17-03-17 20:22:33.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:33.208 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:22:33.208 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:22:33.208 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:33.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:22:33.208 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:22:33.208 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:33.208 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:33.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:22:33.218 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:33.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:22:33.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:33.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:33.348 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:33.348 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:33.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) start.
17-03-17 20:22:33.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:33.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:33.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:33.358 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:33.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) start.
17-03-17 20:22:33.538 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:33.538 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:33.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28635 150' command took 2 ms to send, 1334 ms to get response, and 1346 ms overall
17-03-17 20:22:33.538 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130589
17-03-17 20:22:33.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13059 mm
17-03-17 20:22:33.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:33.548 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:22:33.548 -07 000000551 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 20:22:33.548 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:33.548 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28527, sync = True, waitForSettling = False)
17-03-17 20:22:33.548 -07 000000501 INF: Z Motor: Moving to -0.130588 mm, started at -0.130274 mm, distance = -0.31 um
17-03-17 20:22:33.558 -07 000000501 INF: FPGA: Xmit ZDACW 28527\n [Z Motor]
17-03-17 20:22:33.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1051725872, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:22:33.748 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:22:33.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:33.758 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:33.758 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:22:33.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1087148136, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:22:33.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:22:33.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:33.758 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:33.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:22:34.738 -07 000000012 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:22:34.738 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:22:34.738 -07 000000501 INF: FPGA: 'ZDACW 28527' command took 0 ms to send, 1170 ms to get response, and 1189 ms overall
17-03-17 20:22:34.738 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:34.738 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1180 ms to get response, and 1189 ms overall
17-03-17 20:22:34.738 -07 000000551 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:34.738 -07 000000551 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:34.738 -07 000000551 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:22:34.738 -07 000000012 INF: FPGA: Recv ZDACR 28527
17-03-17 20:22:34.748 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:34.748 -07 000000501 INF: Z Motor: MoveAbsStepped took 1198 ms (did NOT wait for settling yet))
17-03-17 20:22:34.748 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:35.118 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:22:35.118 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:22:35.158 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:35.158 -07 000000012 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:22:35.168 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:35.168 -07 000000551 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:35.168 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:22:35.168 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.172 mm/sec
17-03-17 20:22:36.118 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:36.118 -07 000000501 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:22:36.128 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.128 -07 000000551 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:36.148 -07 000000551 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:36.148 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:36.148 -07 000000551 INF: Y Motor: Moved to 70.6895 after 2603 ms (table move)
17-03-17 20:22:36.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130588 mm (DAC = 28527)
17-03-17 20:22:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.148 -07 000000012 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:22:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29610
17-03-17 20:22:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:22:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.178 -07 000000551 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:22:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.188 -07 000000551 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:22:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29631
17-03-17 20:22:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.208 -07 000000012 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:22:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.218 -07 000000012 INF: FPGA: Recv ZSGSRD 29611
17-03-17 20:22:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29612
17-03-17 20:22:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.238 -07 000000551 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:22:36.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:36.248 -07 000000012 INF: FPGA: Recv ZPIEZORD 25391
17-03-17 20:22:36.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.3 V.
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29610 (-129.8 uncal um), Max = 29631 (-129.9 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 15, negNoise = 6
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: After move to -0.130588, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: Settle wait time = 2605 ms, measure time = 104 ms (allowed 150 ms), total time = 2709 ms
17-03-17 20:22:36.258 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:36.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2763 ms
17-03-17 20:22:36.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:36.308 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.130582818801528. ----------
17-03-17 20:22:36.308 -07 000000610 INF: Cycle	37	Tile	14	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:36.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28350, sync = True, waitForSettling = True)
17-03-17 20:22:36.308 -07 000000610 INF: Z Motor: Moving to -0.129778 mm, started at -0.130583 mm, distance = 0.80 um
17-03-17 20:22:36.308 -07 000000610 INF: FPGA: Xmit ZDACW 28350\n [Z Motor]
17-03-17 20:22:36.308 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:22:36.318 -07 000000610 INF: FPGA: 'ZDACW 28350' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:36.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:36.318 -07 000000012 INF: FPGA: Recv ZDACR 28350
17-03-17 20:22:36.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:36.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29490
17-03-17 20:22:36.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:36.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29495
17-03-17 20:22:36.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29492
17-03-17 20:22:36.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.508 -07 000000501 INF: FPGA: Recv ZSGSRD 29489
17-03-17 20:22:36.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.518 -07 000000438 INF: FPGA: Recv ZSGSRD 29491
17-03-17 20:22:36.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:22:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.538 -07 000000501 INF: FPGA: Recv ZSGSRD 29487
17-03-17 20:22:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.548 -07 000000438 INF: FPGA: Recv ZSGSRD 29486
17-03-17 20:22:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.558 -07 000000501 INF: FPGA: Recv ZSGSRD 29489
17-03-17 20:22:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:36.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:22:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:36.578 -07 000000012 INF: FPGA: Recv ZPIEZORD 25225
17-03-17 20:22:36.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:36.588 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.4 V.
17-03-17 20:22:36.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29491 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29490 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29486 (-129.0 uncal um), Max = 29498 (-129.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:36.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29491, posNoise = 7, negNoise = 5
17-03-17 20:22:36.588 -07 000000610 INF: Z Motor: After move to -0.129778, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:36.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:22:36.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:36.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:36.588 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:36.588 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:36.588 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:36.588 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:36.588 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:36.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:36.588 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:36.588 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:36.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:36.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:36.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:36.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:36.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:36.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:36.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:36.598 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:22:36.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:22:36.608 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:22:36.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28527 150\n [Camera]
17-03-17 20:22:36.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:36.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:36.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:22:36.988 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.970374,
17-03-17 20:22:37.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:37.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:37.218 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:37.218 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:37.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1143850768, 0x0, 391868352) start.
17-03-17 20:22:37.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:37.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:37.218 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:37.218 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:37.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:22:37.408 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28527 798
17-03-17 20:22:37.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:37.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1143850768, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:22:37.608 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:22:37.608 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:37.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:22:37.608 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:22:37.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:37.608 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:37.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:22:37.618 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:22:37.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:22:37.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:37.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:37.758 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:37.758 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:37.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:22:37.768 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:37.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:37.768 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:37.768 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:37.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:22:37.958 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:22:37.958 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:37.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28527 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall
17-03-17 20:22:37.958 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130426
17-03-17 20:22:37.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13043 mm
17-03-17 20:22:37.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:37.958 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:22:37.958 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 20:22:37.958 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:37.958 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28491, sync = True, waitForSettling = False)
17-03-17 20:22:37.958 -07 000000626 INF: Z Motor: Moving to -0.130423 mm, started at -0.129780 mm, distance = -0.64 um
17-03-17 20:22:37.958 -07 000000476 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:22:37.968 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:37.968 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:37.968 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:37.968 -07 000000415 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:22:37.968 -07 000000626 INF: FPGA: Xmit ZDACW 28491\n [Z Motor]
17-03-17 20:22:37.968 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:22:37.978 -07 000000626 INF: FPGA: 'ZDACW 28491' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:22:37.978 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:37.978 -07 000000438 INF: FPGA: Recv ZDACR 28491
17-03-17 20:22:37.988 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:37.988 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:37.988 -07 000000626 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 20:22:38.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:22:38.168 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:22:38.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:38.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:22:38.168 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:22:38.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:38.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:38.168 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:22:38.168 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:38.178 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:22:38.358 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:22:38.358 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:22:38.398 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:38.398 -07 000000501 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:22:38.408 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:22:38.408 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:38.408 -07 000000415 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:22:38.408 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 20:22:39.358 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:39.358 -07 000000448 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:22:39.368 -07 000000415 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:39.368 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:39.388 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:39.388 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:39.388 -07 000000415 INF: Y Motor: Moved to 71.5200 after 1427 ms (table move)
17-03-17 20:22:39.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130423 mm (DAC = 28491)
17-03-17 20:22:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.388 -07 000000448 INF: FPGA: Recv ZSGSRD 29585
17-03-17 20:22:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.398 -07 000000415 INF: FPGA: Recv ZSGSRD 29587
17-03-17 20:22:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.408 -07 000000415 INF: FPGA: Recv ZSGSRD 29583
17-03-17 20:22:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29597
17-03-17 20:22:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.428 -07 000000415 INF: FPGA: Recv ZSGSRD 29593
17-03-17 20:22:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.438 -07 000000448 INF: FPGA: Recv ZSGSRD 29600
17-03-17 20:22:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29593
17-03-17 20:22:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.458 -07 000000448 INF: FPGA: Recv ZSGSRD 29593
17-03-17 20:22:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29593
17-03-17 20:22:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29588
17-03-17 20:22:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:39.488 -07 000000448 INF: FPGA: Recv ZPIEZORD 25351
17-03-17 20:22:39.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.3 V.
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29591 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29593 (-129.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29583 (-129.6 uncal um), Max = 29600 (-129.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29591, posNoise = 9, negNoise = 8
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: After move to -0.130423, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:22:39.498 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:39.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:22:39.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:39.548 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.130422213497984. ----------
17-03-17 20:22:39.548 -07 000000610 INF: Cycle	37	Tile	15	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:39.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28315, sync = True, waitForSettling = True)
17-03-17 20:22:39.548 -07 000000610 INF: Z Motor: Moving to -0.129618 mm, started at -0.130422 mm, distance = 0.80 um
17-03-17 20:22:39.548 -07 000000610 INF: FPGA: Xmit ZDACW 28315\n [Z Motor]
17-03-17 20:22:39.548 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:22:39.558 -07 000000610 INF: FPGA: 'ZDACW 28315' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:39.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:39.558 -07 000000501 INF: FPGA: Recv ZDACR 28315
17-03-17 20:22:39.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:39.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.718 -07 000000501 INF: FPGA: Recv ZSGSRD 29460
17-03-17 20:22:39.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.728 -07 000000501 INF: FPGA: Recv ZSGSRD 29469
17-03-17 20:22:39.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.738 -07 000000448 INF: FPGA: Recv ZSGSRD 29466
17-03-17 20:22:39.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.748 -07 000000415 INF: FPGA: Recv ZSGSRD 29465
17-03-17 20:22:39.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29468
17-03-17 20:22:39.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.768 -07 000000448 INF: FPGA: Recv ZSGSRD 29470
17-03-17 20:22:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29471
17-03-17 20:22:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.788 -07 000000415 INF: FPGA: Recv ZSGSRD 29469
17-03-17 20:22:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.798 -07 000000501 INF: FPGA: Recv ZSGSRD 29469
17-03-17 20:22:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:39.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29470
17-03-17 20:22:39.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:39.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:39.818 -07 000000480 INF: FPGA: Recv ZPIEZORD 25199
17-03-17 20:22:39.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:39.828 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.4 V.
17-03-17 20:22:39.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29468 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29469 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29471 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:22:39.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29468, posNoise = 3, negNoise = 8
17-03-17 20:22:39.828 -07 000000610 INF: Z Motor: After move to -0.129618, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:39.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:22:39.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:39.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:39.828 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:39.828 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:39.828 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:39.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:39.828 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:39.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:39.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:39.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:39.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:39.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:39.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:22:39.828 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:39.838 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:39.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:39.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:22:39.838 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:39.838 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:22:39.838 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:39.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28491 150\n [Camera]
17-03-17 20:22:40.038 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:40.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:40.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:40.458 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:40.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:40.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:22:40.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:40.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:40.458 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:40.458 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:40.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:22:40.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28491 798
17-03-17 20:22:40.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:40.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:22:40.848 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:22:40.848 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:40.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:22:40.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:22:40.848 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:40.848 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:40.848 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:22:40.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:22:40.858 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:22:40.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:40.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:40.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:41.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:41.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:41.118 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:41.118 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:41.118 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:22:41.128 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:41.128 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:22:41.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:41.188 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:41.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28491 150' command took 4 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:22:41.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:22:41.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129632035404547. ------
17-03-17 20:22:41.198 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:41.198 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13553 mm
17-03-17 20:22:41.198 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:41.198 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:22:41.198 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29607, sync = True, waitForSettling = False)
17-03-17 20:22:41.198 -07 000000431 INF: Z Motor: Moving to -0.135532 mm, started at -0.129632 mm, distance = -5.90 um
17-03-17 20:22:41.198 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:41.198 -07 000000623 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 20:22:41.208 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:22:41.208 -07 000000431 INF: FPGA: Xmit ZDACW 29607\n [Z Motor]
17-03-17 20:22:41.208 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:22:41.218 -07 000000431 INF: FPGA: 'ZDACW 29607' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:22:41.218 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:41.218 -07 000000415 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:22:41.228 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:22:41.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:22:41.228 -07 000000623 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:41.228 -07 000000623 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:41.228 -07 000000623 INF: Y Motor: Moving 1348 steps-26
17-03-17 20:22:41.238 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:41.238 -07 000000438 INF: FPGA: Recv ZDACR 29607
17-03-17 20:22:41.248 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:41.248 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:22:41.248 -07 000000431 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:22:41.428 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:22:41.428 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:22:41.518 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:22:41.518 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:22:41.518 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:41.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:22:41.518 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:22:41.518 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:41.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:41.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 20:22:41.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:41.528 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:22:41.618 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:22:41.618 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:22:41.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:41.658 -07 000000462 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:22:41.668 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:22:41.668 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:41.668 -07 000000623 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:22:41.668 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.128 mm/sec
17-03-17 20:22:41.778 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:42.348 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 3.981281,
17-03-17 20:22:42.618 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:42.618 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:22:42.628 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:42.628 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:42.648 -07 000000623 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:42.648 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:42.648 -07 000000623 INF: Y Motor: Moved to 72.3501 after 1446 ms (table move)
17-03-17 20:22:42.648 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135532 mm (DAC = 29607)
17-03-17 20:22:42.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30390
17-03-17 20:22:42.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:22:42.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.668 -07 000000626 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:22:42.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:22:42.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30387
17-03-17 20:22:42.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.708 -07 000000462 INF: FPGA: Recv ZSGSRD 30392
17-03-17 20:22:42.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:22:42.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:22:42.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:22:42.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30387
17-03-17 20:22:42.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.758 -07 000000462 INF: FPGA: Recv ZSGSRD 30393
17-03-17 20:22:42.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.768 -07 000000541 INF: FPGA: Recv ZSGSRD 30386
17-03-17 20:22:42.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.778 -07 000000462 INF: FPGA: Recv ZSGSRD 30389
17-03-17 20:22:42.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:42.788 -07 000000462 INF: FPGA: Recv ZSGSRD 30389
17-03-17 20:22:42.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.798 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:42.798 -07 000000462 INF: FPGA: Recv ZPIEZORD 26412
17-03-17 20:22:42.808 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -8.8 V.
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30388 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30388 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30393 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30388, posNoise = 5, negNoise = 5
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: After move to -0.135532, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 154 ms (allowed 150 ms), total time = 1603 ms
17-03-17 20:22:42.808 -07 000000448 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 20:22:42.808 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:22:42.808 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:42.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:42.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:42.808 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:42.808 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:42.808 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:22:42.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:42.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:22:42.808 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:22:42.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:42.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:22:42.828 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:22:42.828 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:22:42.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:22:42.878 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:22:43.078 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:22:43.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:22:43.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:22:43.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:22:43.118 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:22:43.118 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:22:43.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:22:43.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:22:43.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:43.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:22:43.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:22:43.218 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:22:43.218 -07 000000448 INF: Autofocus start
17-03-17 20:22:43.218 -07 000000448 INF: MeasureProfile start
17-03-17 20:22:43.218 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:22:43.228 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:22:43.228 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:22:43.228 -07 000000448 INF: MeasureProfile done
17-03-17 20:22:43.228 -07 000000448 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 20:22:43.228 -07 000000448 INF: Autofocus finished
17-03-17 20:22:43.428 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:22:43.428 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:22:43.428 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135542310574967. ----------
17-03-17 20:22:43.428 -07 000000610 INF: Cycle	37	Tile	16	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:43.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28085, sync = True, waitForSettling = True)
17-03-17 20:22:43.438 -07 000000610 INF: Z Motor: Moving to -0.128565 mm, started at -0.135542 mm, distance = 6.98 um
17-03-17 20:22:43.438 -07 000000610 INF: FPGA: Xmit ZDACW 28085\n [Z Motor]
17-03-17 20:22:43.438 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:22:43.448 -07 000000610 INF: FPGA: 'ZDACW 28085' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:43.448 -07 000000448 INF: FPGA: Recv ZDACR 28085
17-03-17 20:22:43.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:22:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.618 -07 000000541 INF: FPGA: Recv ZSGSRD 29295
17-03-17 20:22:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29300
17-03-17 20:22:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:22:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29308
17-03-17 20:22:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29296
17-03-17 20:22:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.668 -07 000000448 INF: FPGA: Recv ZSGSRD 29297
17-03-17 20:22:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.678 -07 000000551 INF: FPGA: Recv ZSGSRD 29309
17-03-17 20:22:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29306
17-03-17 20:22:43.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:22:43.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:43.698 -07 000000012 INF: FPGA: Recv ZSGSRD 29306
17-03-17 20:22:43.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:43.708 -07 000000551 INF: FPGA: Recv ZPIEZORD 24997
17-03-17 20:22:43.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:43.718 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 20:22:43.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29309 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:22:43.718 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 7, negNoise = 7
17-03-17 20:22:43.718 -07 000000610 INF: Z Motor: After move to -0.128565, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:43.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:22:43.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:43.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:43.718 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:43.718 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:43.718 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:43.718 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:43.718 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:43.718 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:43.718 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:22:43.718 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:43.718 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:43.718 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:43.718 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:43.718 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:43.728 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:43.728 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:43.738 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:22:43.738 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:22:43.738 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:22:43.738 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:43.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28261 150\n [Camera]
17-03-17 20:22:43.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:44.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:44.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:44.358 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:44.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:44.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:44.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:44.478 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:44.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1056131176, 0x0, 391868352) start.
17-03-17 20:22:44.478 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:44.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:22:44.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28261 798
17-03-17 20:22:44.698 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:44.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1056131176, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:22:44.858 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:22:44.858 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:44.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:22:44.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:22:44.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:44.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:44.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 20:22:44.858 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:44.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 20:22:44.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:44.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:44.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:44.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:44.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:44.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:44.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:44.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:22:44.908 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:44.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:22:45.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:45.088 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:45.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28261 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:22:45.088 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129098
17-03-17 20:22:45.088 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12910 mm
17-03-17 20:22:45.088 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:45.098 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:22:45.098 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 20:22:45.098 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:45.098 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28201, sync = True, waitForSettling = False)
17-03-17 20:22:45.098 -07 000000541 INF: Z Motor: Moving to -0.129096 mm, started at -0.128566 mm, distance = -0.53 um
17-03-17 20:22:45.098 -07 000000476 INF: FPGA: Recv YRDPOS 148174
17-03-17 20:22:45.108 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:22:45.108 -07 000000547 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:45.108 -07 000000541 INF: FPGA: Xmit ZDACW 28201\n [Z Motor]
17-03-17 20:22:45.108 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:22:45.108 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:45.108 -07 000000547 INF: Y Motor: Moving 1347 steps-26
17-03-17 20:22:45.118 -07 000000541 INF: FPGA: 'ZDACW 28201' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:22:45.118 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:45.118 -07 000000480 INF: FPGA: Recv ZDACR 28201
17-03-17 20:22:45.128 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:45.128 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:45.128 -07 000000541 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 20:22:45.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:22:45.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:22:45.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:45.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:22:45.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:22:45.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:45.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:45.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:22:45.288 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:22:45.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:22:45.498 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:22:45.498 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:22:45.538 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:45.538 -07 000000476 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:22:45.548 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:45.548 -07 000000547 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:45.548 -07 000000547 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:22:45.548 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.155 mm/sec
17-03-17 20:22:46.498 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:46.498 -07 000000448 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:22:46.508 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:46.508 -07 000000547 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:46.528 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:46.528 -07 000000547 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:46.528 -07 000000547 INF: Y Motor: Moved to 73.1768 after 1429 ms (table move)
17-03-17 20:22:46.528 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129096 mm (DAC = 28201)
17-03-17 20:22:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.528 -07 000000448 INF: FPGA: Recv ZSGSRD 29379
17-03-17 20:22:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.538 -07 000000623 INF: FPGA: Recv ZSGSRD 29377
17-03-17 20:22:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.548 -07 000000433 INF: FPGA: Recv ZSGSRD 29383
17-03-17 20:22:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.558 -07 000000476 INF: FPGA: Recv ZSGSRD 29387
17-03-17 20:22:46.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.568 -07 000000480 INF: FPGA: Recv ZSGSRD 29384
17-03-17 20:22:46.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.578 -07 000000547 INF: FPGA: Recv ZSGSRD 29391
17-03-17 20:22:46.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.588 -07 000000476 INF: FPGA: Recv ZSGSRD 29389
17-03-17 20:22:46.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29386
17-03-17 20:22:46.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29386
17-03-17 20:22:46.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.618 -07 000000462 INF: FPGA: Recv ZSGSRD 29377
17-03-17 20:22:46.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:46.628 -07 000000476 INF: FPGA: Recv ZPIEZORD 25087
17-03-17 20:22:46.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.4 V.
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29384 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29385 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29377 (-128.3 uncal um), Max = 29391 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29384, posNoise = 7, negNoise = 7
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: After move to -0.129096, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:22:46.638 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:46.688 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:22:46.688 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:46.688 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129092401584639. ----------
17-03-17 20:22:46.688 -07 000000610 INF: Cycle	37	Tile	17	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:46.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28025, sync = True, waitForSettling = True)
17-03-17 20:22:46.688 -07 000000610 INF: Z Motor: Moving to -0.128290 mm, started at -0.129092 mm, distance = 0.80 um
17-03-17 20:22:46.688 -07 000000610 INF: FPGA: Xmit ZDACW 28025\n [Z Motor]
17-03-17 20:22:46.688 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:22:46.698 -07 000000610 INF: FPGA: 'ZDACW 28025' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:46.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:46.698 -07 000000501 INF: FPGA: Recv ZDACR 28025
17-03-17 20:22:46.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:46.778 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.858 -07 000000433 INF: FPGA: Recv ZSGSRD 29259
17-03-17 20:22:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29261
17-03-17 20:22:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:22:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29262
17-03-17 20:22:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.898 -07 000000433 INF: FPGA: Recv ZSGSRD 29259
17-03-17 20:22:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.908 -07 000000433 INF: FPGA: Recv ZSGSRD 29260
17-03-17 20:22:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.918 -07 000000480 INF: FPGA: Recv ZSGSRD 29262
17-03-17 20:22:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29252
17-03-17 20:22:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:22:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:46.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:22:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:46.958 -07 000000541 INF: FPGA: Recv ZPIEZORD 24929
17-03-17 20:22:46.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:46.968 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.5 V.
17-03-17 20:22:46.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29252 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:22:46.968 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 4, negNoise = 8
17-03-17 20:22:46.968 -07 000000610 INF: Z Motor: After move to -0.128290, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:46.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:22:46.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:46.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:46.968 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:46.968 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:46.968 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:46.968 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:46.968 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:22:46.968 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:46.968 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:46.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:46.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:46.968 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:46.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:22:46.978 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:46.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:22:46.978 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:46.988 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:22:46.988 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:22:46.988 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:22:46.988 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:22:46.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28201 150\n [Camera]
17-03-17 20:22:47.188 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:47.598 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:47.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:47.598 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:47.598 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:47.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 20:22:47.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:47.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:47.608 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:47.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:47.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1091553440, 0x0, 418435064) start.
17-03-17 20:22:47.718 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.028963,
17-03-17 20:22:47.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28201 798
17-03-17 20:22:47.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:47.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:22:48.008 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:22:48.008 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:48.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1091553440, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:22:48.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:22:48.008 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:48.008 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:22:48.008 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:22:48.018 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:22:48.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-17 20:22:48.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:48.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:48.148 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:48.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:48.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1126975704, 0x0, 391868352) start.
17-03-17 20:22:48.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:48.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:48.148 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:48.148 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:48.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:22:48.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:48.338 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:48.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28201 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-17 20:22:48.338 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128687
17-03-17 20:22:48.338 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12869 mm
17-03-17 20:22:48.338 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:48.338 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:22:48.338 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 20:22:48.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:48.338 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28112, sync = True, waitForSettling = False)
17-03-17 20:22:48.338 -07 000000438 INF: Z Motor: Moving to -0.128688 mm, started at -0.128296 mm, distance = -0.39 um
17-03-17 20:22:48.338 -07 000000433 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:22:48.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:22:48.348 -07 000000480 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:48.348 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:48.348 -07 000000480 INF: Y Motor: Moving 1353 steps-32
17-03-17 20:22:48.348 -07 000000438 INF: FPGA: Xmit ZDACW 28112\n [Z Motor]
17-03-17 20:22:48.348 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:22:48.358 -07 000000438 INF: FPGA: 'ZDACW 28112' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:22:48.358 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:48.358 -07 000000547 INF: FPGA: Recv ZDACR 28112
17-03-17 20:22:48.368 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:48.368 -07 000000438 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:22:48.368 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:48.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1126975704, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:22:48.528 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:48.528 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:48.528 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:22:48.528 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:22:48.528 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:48.528 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:48.528 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:22:48.528 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:48.538 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:22:48.738 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 20:22:48.738 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:22:48.768 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:48.778 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:22:48.778 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:22:48.778 -07 000000480 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:48.778 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:22:48.778 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 20:22:49.728 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:49.728 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:22:49.738 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:49.738 -07 000000480 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:49.748 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:49.748 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:49.748 -07 000000480 INF: Y Motor: Moved to 74.0088 after 1411 ms (table move)
17-03-17 20:22:49.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128688 mm (DAC = 28112)
17-03-17 20:22:49.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:22:49.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 20:22:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29315
17-03-17 20:22:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.768 -07 000000448 INF: FPGA: Recv ZSGSRD 29313
17-03-17 20:22:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29324
17-03-17 20:22:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.788 -07 000000541 INF: FPGA: Recv ZSGSRD 29326
17-03-17 20:22:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29322
17-03-17 20:22:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.808 -07 000000480 INF: FPGA: Recv ZSGSRD 29317
17-03-17 20:22:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.818 -07 000000626 INF: FPGA: Recv ZSGSRD 29326
17-03-17 20:22:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.828 -07 000000448 INF: FPGA: Recv ZSGSRD 29318
17-03-17 20:22:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:49.838 -07 000000462 INF: FPGA: Recv ZSGSRD 29319
17-03-17 20:22:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:49.848 -07 000000462 INF: FPGA: Recv ZPIEZORD 25020
17-03-17 20:22:49.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.4 V.
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29320 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29313 (-127.9 uncal um), Max = 29326 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29320, posNoise = 6, negNoise = 7
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: After move to -0.128688, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 102 ms (allowed 150 ms), total time = 1514 ms
17-03-17 20:22:49.858 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:49.908 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 20:22:49.908 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:49.908 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128681252007566. ----------
17-03-17 20:22:49.908 -07 000000610 INF: Cycle	37	Tile	18	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:49.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27935, sync = True, waitForSettling = True)
17-03-17 20:22:49.908 -07 000000610 INF: Z Motor: Moving to -0.127878 mm, started at -0.128681 mm, distance = 0.80 um
17-03-17 20:22:49.908 -07 000000610 INF: FPGA: Xmit ZDACW 27935\n [Z Motor]
17-03-17 20:22:49.908 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:22:49.918 -07 000000610 INF: FPGA: 'ZDACW 27935' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:49.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:49.918 -07 000000448 INF: FPGA: Recv ZDACR 27935
17-03-17 20:22:49.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:49.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29196
17-03-17 20:22:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.088 -07 000000462 INF: FPGA: Recv ZSGSRD 29196
17-03-17 20:22:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29197
17-03-17 20:22:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29190
17-03-17 20:22:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.118 -07 000000478 INF: FPGA: Recv ZSGSRD 29191
17-03-17 20:22:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:22:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:22:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29193
17-03-17 20:22:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:22:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:50.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29191
17-03-17 20:22:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:50.178 -07 000000547 INF: FPGA: Recv ZPIEZORD 24833
17-03-17 20:22:50.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:50.188 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.6 V.
17-03-17 20:22:50.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29195 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29196 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29190 (-127.1 uncal um), Max = 29198 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:22:50.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29195, posNoise = 3, negNoise = 5
17-03-17 20:22:50.188 -07 000000610 INF: Z Motor: After move to -0.127878, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:50.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:22:50.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:50.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:50.188 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:50.188 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:50.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:50.188 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:50.188 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:50.188 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:50.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:22:50.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:50.188 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:22:50.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:50.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:22:50.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:50.198 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:50.198 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:50.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:22:50.208 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:50.208 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:22:50.208 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:22:50.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28112 150\n [Camera]
17-03-17 20:22:50.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:50.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-17 20:22:50.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-17 20:22:50.828 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:50.828 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:50.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:22:50.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-17 20:22:50.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-17 20:22:50.828 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:50.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:50.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:22:51.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28112 798
17-03-17 20:22:51.168 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:51.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:22:51.208 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:22:51.208 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:51.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:22:51.208 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:22:51.208 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:51.208 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:51.208 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:51.208 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:51.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:22:51.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:51.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:51.368 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:51.368 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:51.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:22:51.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:51.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:51.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:51.368 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:51.368 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:22:51.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:22:51.558 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:51.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28112 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:22:51.558 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128276
17-03-17 20:22:51.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12828 mm
17-03-17 20:22:51.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:22:51.568 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:22:51.568 -07 000000462 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 20:22:51.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:51.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:22:51.748 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:51.748 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:51.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:22:51.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:22:51.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:51.758 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:51.758 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:22:51.758 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:51.768 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:22:51.788 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:22:51.788 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:51.788 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 219 ms to get response, and 225 ms overall
17-03-17 20:22:51.788 -07 000000462 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:51.788 -07 000000462 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:22:51.798 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:22:51.798 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:22:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 36. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:51.798 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 28022, sync = True, waitForSettling = False)
17-03-17 20:22:51.798 -07 000000478 INF: Z Motor: Moving to -0.128276 mm, started at -0.127878 mm, distance = -0.40 um
17-03-17 20:22:51.808 -07 000000478 INF: FPGA: Xmit ZDACW 28022\n [Z Motor]
17-03-17 20:22:51.808 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:22:51.818 -07 000000478 INF: FPGA: 'ZDACW 28022' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:22:51.818 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:51.818 -07 000000480 INF: FPGA: Recv ZDACR 28022
17-03-17 20:22:51.828 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:51.828 -07 000000478 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:22:52.168 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:22:52.168 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:22:52.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:52.198 -07 000000480 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:22:52.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:52.208 -07 000000462 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:52.208 -07 000000462 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 20:22:52.208 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 20:22:53.088 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.026244,
17-03-17 20:22:53.158 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:53.158 -07 000000478 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:22:53.168 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:53.168 -07 000000462 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:53.178 -07 000000462 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:53.178 -07 000000462 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:22:53.178 -07 000000462 INF: Y Motor: Moved to 74.8330 after 1611 ms (table move)
17-03-17 20:22:53.188 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128276 mm (DAC = 28022)
17-03-17 20:22:53.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:22:53.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:22:53.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.208 -07 000000478 INF: FPGA: Recv ZSGSRD 29258
17-03-17 20:22:53.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.218 -07 000000415 INF: FPGA: Recv ZSGSRD 29251
17-03-17 20:22:53.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:22:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.238 -07 000000478 INF: FPGA: Recv ZSGSRD 29258
17-03-17 20:22:53.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.248 -07 000000501 INF: FPGA: Recv ZSGSRD 29265
17-03-17 20:22:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29255
17-03-17 20:22:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.268 -07 000000476 INF: FPGA: Recv ZSGSRD 29255
17-03-17 20:22:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.278 -07 000000480 INF: FPGA: Recv ZSGSRD 29257
17-03-17 20:22:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:53.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 24978
17-03-17 20:22:53.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.4 V.
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29257 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29256 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29251 (-127.5 uncal um), Max = 29265 (-127.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29257, posNoise = 8, negNoise = 6
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: After move to -0.128276, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: Settle wait time = 1388 ms, measure time = 111 ms (allowed 150 ms), total time = 1499 ms
17-03-17 20:22:53.298 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:22:53.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1768 ms
17-03-17 20:22:53.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:22:53.338 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.128276526642635. ----------
17-03-17 20:22:53.338 -07 000000610 INF: Cycle	37	Tile	19	Exposure Settings		A	413	G	199	T	199	C	413
17-03-17 20:22:53.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27845, sync = True, waitForSettling = True)
17-03-17 20:22:53.338 -07 000000610 INF: Z Motor: Moving to -0.127466 mm, started at -0.128277 mm, distance = 0.81 um
17-03-17 20:22:53.338 -07 000000610 INF: FPGA: Xmit ZDACW 27845\n [Z Motor]
17-03-17 20:22:53.338 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:22:53.348 -07 000000610 INF: FPGA: 'ZDACW 27845' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:53.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:22:53.348 -07 000000501 INF: FPGA: Recv ZDACR 27845
17-03-17 20:22:53.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:22:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.508 -07 000000431 INF: FPGA: Recv ZSGSRD 29132
17-03-17 20:22:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29130
17-03-17 20:22:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29127
17-03-17 20:22:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.538 -07 000000415 INF: FPGA: Recv ZSGSRD 29133
17-03-17 20:22:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29140
17-03-17 20:22:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.558 -07 000000501 INF: FPGA: Recv ZSGSRD 29125
17-03-17 20:22:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.568 -07 000000415 INF: FPGA: Recv ZSGSRD 29133
17-03-17 20:22:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.578 -07 000000415 INF: FPGA: Recv ZSGSRD 29132
17-03-17 20:22:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29133
17-03-17 20:22:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:22:53.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29131
17-03-17 20:22:53.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:22:53.608 -07 000000623 INF: FPGA: Recv ZPIEZORD 24795
17-03-17 20:22:53.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:53.618 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.249 V. Piezo Error = -9.5 V.
17-03-17 20:22:53.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29132 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29132 (-126.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29125 (-126.7 uncal um), Max = 29140 (-126.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:22:53.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29132, posNoise = 8, negNoise = 7
17-03-17 20:22:53.618 -07 000000610 INF: Z Motor: After move to -0.127466, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:22:53.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:22:53.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:22:53.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:22:53.618 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:22:53.618 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:22:53.618 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:22:53.618 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:22:53.618 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:22:53.618 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:22:53.618 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:22:53.618 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:22:53.618 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:22:53.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:22:53.628 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:22:53.628 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:22:53.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:22:53.628 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:22:53.638 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:22:53.638 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:22:53.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:22:53.638 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:22:53.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28022 150\n [Camera]
17-03-17 20:22:53.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:22:54.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-17 20:22:54.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-17 20:22:54.258 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:54.258 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:54.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:22:54.258 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-17 20:22:54.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-17 20:22:54.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:54.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:54.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:22:54.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28022 798
17-03-17 20:22:54.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-17 20:22:54.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:22:54.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:22:54.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:54.638 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:22:54.638 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:22:54.638 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:54.638 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:54.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:22:54.648 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:54.648 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:22:54.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-17 20:22:54.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-17 20:22:54.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:22:54.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:22:54.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:22:54.798 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-17 20:22:54.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-17 20:22:54.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:22:54.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:22:54.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:22:54.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-17 20:22:54.988 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:22:54.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28022 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-17 20:22:55.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:22:55.188 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:22:55.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:55.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:22:55.188 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:22:55.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:22:55.188 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:22:55.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:22:55.188 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:22:55.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:22:55.198 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:22:55.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:22:55.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:22:55.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 20:22:55.428 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 20:22:55.428 -07 000000610 INF: Imaging Cycle 37: ScanTilesCommand Cycle 37 time end. Duration was 150932 ms.
17-03-17 20:22:55.428 -07 000000610 INF: =================== Cycle #37 ===================
17-03-17 20:22:55.428 -07 000000610 INF: ===================  ===================
17-03-17 20:22:55.428 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:22:55.428 -07 000000501 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 20:22:55.438 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:22:55.438 -07 000000012 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 20:22:55.438 -07 000000012 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 37, FrontChillerTemperature: 4.026244, FrontChillerHeatSinkTemperature: 0.422846, AmbientTemperature: 19.01336, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.89714, GreenLEDSensorTemperature: 25.19125, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 20:22:55.458 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.