17-03-17 20:22:55.488 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:22:55.488 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:22:55.488 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 20:22:55.488 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:55.498 -07 000000501 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:22:55.498 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:22:55.498 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:55.498 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:22:55.498 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:22:55.498 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:22:55.608 -07 000000012 INF: FPGA: Recv YMVTO 154378 870
17-03-17 20:22:55.608 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 20:22:55.608 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:22:55.608 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:22:55.608 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.680 mm/sec
17-03-17 20:22:56.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:22:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=520, R2=538, Total=1058. Warn if over 250 bubbles per interval.
17-03-17 20:22:58.458 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.02213,
17-03-17 20:22:58.608 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:22:58.608 -07 000000431 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:22:58.618 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:22:58.618 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:22:58.628 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:22:58.628 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:22:58.628 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3137 ms
17-03-17 20:22:58.638 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 60° ===================
17-03-17 20:22:58.638 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:22:58.818 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:22:58.818 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 20:22:58.828 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:22:58.828 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 60° ===================
17-03-17 20:22:58.828 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:22:58.828 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:22:58.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:22:58.858 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:22:58.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:22:58.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:22:59.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:22:59.178 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:22:59.178 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:22:59.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:22:59.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:22:59.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:22:59.348 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:22:59.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:22:59.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:22:59.378 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:22:59.378 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:22:59.378 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:22:59.508 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:22:59.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:01.778 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 20:23:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=523, R2=540, Total=1063. Warn if over 250 bubbles per interval.
17-03-17 20:23:02.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:02.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:03.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:03.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:03.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:03.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:03.608 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:23:03.608 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:03.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:03.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:23:03.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:23:03.828 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.993549,
17-03-17 20:23:03.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:03.928 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:23:03.928 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:23:03.928 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:04.058 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:04.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:04.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:04.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:04.548 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:23:04.548 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:05.768 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:23:05.768 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:23:05.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:05.788 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:23:05.788 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:23:05.788 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:23:05.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:23:05.938 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:23:05.938 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:23:05.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:06.008 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:23:06.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:23:06.108 -07 000000610 INF: =================== Cycle #38, Pumping Reagent CMS (4) ===================
17-03-17 20:23:06.108 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:23:06.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:06.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:23:06.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:23:06.138 -07 000000610 INF: =================== Cycle #38, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:23:06.268 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:23:06.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:06.778 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 3
17-03-17 20:23:06.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=3, R2=5, Total=8. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=526, R2=545, Total=1071. Warn if over 250 bubbles per interval.
17-03-17 20:23:07.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:07.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:08.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:08.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:08.228 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:23:08.228 -07 000000610 INF: =================== Cycle #38, Pumping Reagent CMS (4) ===================
17-03-17 20:23:08.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:08.388 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:23:08.388 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:23:08.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:08.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:23:08.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:23:08.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:08.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:08.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:09.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:09.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:09.168 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:23:09.168 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:09.198 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.997626,
17-03-17 20:23:10.388 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:23:10.388 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:23:10.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:10.408 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:23:10.408 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:23:10.408 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:23:10.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:23:10.578 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:23:10.578 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:23:10.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:10.648 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:23:10.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:23:10.748 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:10.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:23:10.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:10.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:23:10.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:23:10.778 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:23:10.908 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:23:10.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:11.778 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:11.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=526, R2=545, Total=1071. Warn if over 250 bubbles per interval.
17-03-17 20:23:11.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:11.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:11.848 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:23:11.848 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:11.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:12.008 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:23:12.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:23:12.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:12.168 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:23:12.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:23:12.168 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:12.298 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:12.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:12.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:12.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:12.788 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:23:12.788 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:12.788 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:23:12.788 -07 000000501 INF: WaitCommand(10000) start
17-03-17 20:23:12.788 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:23:14.008 -07 000000429 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:23:14.008 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 20:23:14.038 -07 000000429 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:23:14.038 -07 000000429 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:23:14.168 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:23:14.208 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:14.568 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.977204,
17-03-17 20:23:15.738 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:15.768 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:16.188 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:16.218 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:16.218 -07 000000429 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:23:16.218 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:23:16.218 -07 000000429 INF: ===================  ===================
17-03-17 20:23:16.778 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:16.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=526, R2=545, Total=1071. Warn if over 250 bubbles per interval.
17-03-17 20:23:19.938 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.96762,
17-03-17 20:23:21.778 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:21.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=526, R2=545, Total=1071. Warn if over 250 bubbles per interval.
17-03-17 20:23:22.798 -07 000000501 INF: WaitCommand(10000) end
17-03-17 20:23:22.798 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:22.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:23:22.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:22.838 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:23:22.838 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:23:22.838 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:23:22.968 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:23:23.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:25.308 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.981281,
17-03-17 20:23:26.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:23:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=527, R2=546, Total=1073. Warn if over 250 bubbles per interval.
17-03-17 20:23:29.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:29.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:29.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:29.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:30.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:30.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:30.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:30.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:30.678 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.975845,
17-03-17 20:23:30.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:30.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:30.968 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:23:30.968 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:31.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:31.128 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:23:31.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:23:31.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:31.288 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:23:31.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:23:31.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:31.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:31.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:31.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 14 R1 13
17-03-17 20:23:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=13, R2=14, Total=27. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:31.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:31.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:31.908 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:23:31.908 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:33.128 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:23:33.128 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:23:33.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:33.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:23:33.148 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:23:33.148 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:23:33.358 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:23:33.378 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:23:33.378 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:23:33.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:33.448 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:23:33.448 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:23:33.548 -07 000000610 INF: =================== Cycle #38, Pumping Reagent IMT (1) ===================
17-03-17 20:23:33.548 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:23:33.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:33.578 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:23:33.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:23:33.578 -07 000000610 INF: =================== Cycle #38, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:23:33.708 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:23:33.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:35.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:35.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:35.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:35.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:35.668 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:23:35.668 -07 000000610 INF: =================== Cycle #38, Pumping Reagent IMT (1) ===================
17-03-17 20:23:35.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:35.828 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:23:35.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:23:35.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:35.988 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:23:35.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:23:35.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:36.048 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.985358,
17-03-17 20:23:36.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:36.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:36.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:37.238 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:37.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:37.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:37.248 -07 000000610 INF: LanePump: Waited 1099 ms for pump motion to complete
17-03-17 20:23:37.248 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:37.828 -07 000000610 INF: AsyncDelayTimer waited 579ms
17-03-17 20:23:37.828 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:23:37.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:37.848 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:23:37.848 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:23:37.848 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:23:38.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:23:38.098 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:23:38.098 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:23:38.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:23:38.168 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:23:38.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:23:38.268 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:38.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:23:38.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:38.408 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:23:38.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:23:38.408 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:23:38.538 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:23:38.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:23:39.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:39.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:39.478 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:23:39.478 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:23:39.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:39.638 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:23:39.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:23:39.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:23:39.798 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:23:39.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:23:39.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:23:39.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:23:39.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:40.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:23:40.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:23:40.418 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:23:40.418 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:40.418 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 65° ===================
17-03-17 20:23:40.418 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:23:40.418 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:23:40.418 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:23:40.428 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:23:40.428 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:23:40.428 -07 000000415 INF: FPGA: Recv TEC2EN 
17-03-17 20:23:40.438 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:23:40.438 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 65° ===================
17-03-17 20:23:40.438 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:23:40.438 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:23:41.418 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.99219,
17-03-17 20:23:41.778 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:46.778 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.988112,
17-03-17 20:23:46.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:51.778 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:51.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:52.138 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.988112,
17-03-17 20:23:56.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:23:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:23:57.498 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.024884,
17-03-17 20:24:01.778 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:02.858 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.016692,
17-03-17 20:24:06.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:06.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:08.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.003063,
17-03-17 20:24:10.448 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:24:10.448 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:10.448 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:24:10.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:10.578 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:24:10.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:24:10.578 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:24:10.708 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:24:10.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:11.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:11.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:11.318 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:24:11.318 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:11.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:11.478 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:24:11.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:24:11.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:11.638 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:24:11.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:24:11.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:24:11.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:24:11.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:11.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:11.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:12.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:12.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:12.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:24:12.258 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:24:12.258 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:24:12.258 -07 000000478 INF: WaitCommand(30000) start
17-03-17 20:24:12.258 -07 000000415 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:24:13.478 -07 000000415 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:24:13.478 -07 000000415 INF: LanePump: Xmit /1?\r
17-03-17 20:24:13.508 -07 000000415 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:24:13.508 -07 000000415 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:24:13.578 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.977204,
17-03-17 20:24:13.638 -07 000000415 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:24:13.678 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:16.018 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:16.048 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:16.468 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:16.498 -07 000000415 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:16.498 -07 000000415 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:24:16.498 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:24:16.498 -07 000000415 INF: ===================  ===================
17-03-17 20:24:16.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:16.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:18.938 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.023489,
17-03-17 20:24:21.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:21.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:24.298 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.026244,
17-03-17 20:24:26.778 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:29.658 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.005817,
17-03-17 20:24:31.778 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:35.018 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.986717,
17-03-17 20:24:36.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:36.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:41.048 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.001704,
17-03-17 20:24:41.778 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:42.268 -07 000000478 INF: WaitCommand(30000) end
17-03-17 20:24:42.268 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 22° ===================
17-03-17 20:24:42.268 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:24:42.318 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:24:42.318 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 20:24:42.328 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:24:42.328 -07 000000610 INF: =================== Cycle #38, Flow Cell Temp 22° ===================
17-03-17 20:24:42.328 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:24:42.328 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:42.328 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:24:42.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:42.358 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:24:42.358 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:24:42.358 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:24:42.488 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:24:42.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:45.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:45.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:46.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:46.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:46.408 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.978563,
17-03-17 20:24:46.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:46.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:46.588 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:24:46.588 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:46.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:46.748 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:24:46.748 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:24:46.778 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:46.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:46.908 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:24:46.908 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:24:46.908 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:24:47.038 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:24:47.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:47.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:47.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:47.528 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:24:47.528 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:24:48.748 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:24:48.748 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:24:48.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:24:48.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:24:48.768 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:24:48.768 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:24:48.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:24:48.938 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:24:48.938 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:24:48.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:24:49.008 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:24:49.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:24:49.108 -07 000000610 INF: =================== Cycle #38, Pumping Reagent USM (2) ===================
17-03-17 20:24:49.108 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:24:49.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:49.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:24:49.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:24:49.148 -07 000000610 INF: =================== Cycle #38, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:24:49.278 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:24:49.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:50.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:50.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:51.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:51.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:51.238 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 20:24:51.238 -07 000000610 INF: =================== Cycle #38, Pumping Reagent USM (2) ===================
17-03-17 20:24:51.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:51.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:24:51.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:24:51.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:51.558 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:24:51.558 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:24:51.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:24:51.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:24:51.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:51.768 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.978563,
17-03-17 20:24:51.778 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:51.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:52.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:52.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:52.178 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:24:52.178 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:24:53.398 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:24:53.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:24:53.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:24:53.418 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:24:53.418 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:24:53.418 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:24:53.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:24:53.588 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:24:53.588 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:24:53.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:24:53.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:24:53.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:24:53.758 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:53.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:24:53.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:53.788 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:24:53.788 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:24:53.788 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:24:53.918 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:24:53.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:54.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:54.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:54.858 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:24:54.858 -07 000000610 INF: =================== Cycle #38, Pumping Reagent PR2 (3) ===================
17-03-17 20:24:54.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:55.018 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:24:55.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:24:55.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:24:55.178 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:24:55.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:24:55.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:24:55.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:24:55.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:55.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:55.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:55.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:24:55.798 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:24:55.798 -07 000000431 INF: WaitCommand(10000) start
17-03-17 20:24:55.798 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:24:55.798 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:24:56.778 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:24:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:24:57.018 -07 000000478 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:24:57.018 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 20:24:57.048 -07 000000478 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:24:57.048 -07 000000478 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:24:57.128 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.994908,
17-03-17 20:24:57.178 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:24:57.218 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:58.748 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:58.778 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:24:59.198 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 20:24:59.228 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:24:59.228 -07 000000478 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:24:59.228 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:24:59.228 -07 000000478 INF: ===================  ===================
17-03-17 20:25:01.778 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:02.488 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.027603,
17-03-17 20:25:05.808 -07 000000431 INF: WaitCommand(10000) end
17-03-17 20:25:05.808 -07 000000610 INF: =================== Cycle #38, Imaging ===================
17-03-17 20:25:05.808 -07 000000610 INF: Imaging Cycle 38: ScanTilesCommand Cycle 38 time start.
17-03-17 20:25:05.808 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:25:05.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:25:05.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:25:05.838 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:25:05.838 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:25:06.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:25:06.158 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:25:06.158 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:25:06.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:25:06.228 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:25:06.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:06.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:06.228 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:25:06.228 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:06.228 -07 000000478 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:25:06.228 -07 000000627 INF: FPGA: Recv EXLED1ON 
17-03-17 20:25:06.238 -07 000000478 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:06.238 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:25:06.238 -07 000000429 INF: FPGA: Recv EXLED1ADCR 23184
17-03-17 20:25:06.248 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:06.248 -07 000000478 INF: RedLED: Using Red data: Photodiode ADC 23184 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-17 20:25:06.248 -07 000000478 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:25:06.248 -07 000000429 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:25:06.258 -07 000000478 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:06.258 -07 000000478 INF: RedLED: LED was on for 20 ms
17-03-17 20:25:06.258 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 20:25:06.258 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:25:06.258 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:06.258 -07 000000478 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:25:06.258 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-17 20:25:06.268 -07 000000478 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:06.268 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:25:06.268 -07 000000431 INF: FPGA: Recv EXLED1ADCR 2105
17-03-17 20:25:06.278 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:06.278 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 2105 --> 0.9 mW (old method), or 182.9 mW (new method). Difference = 181.9 mW
17-03-17 20:25:06.278 -07 000000478 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:25:06.278 -07 000000429 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:25:06.288 -07 000000478 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:06.288 -07 000000478 INF: GreenLED: LED was on for 20 ms
17-03-17 20:25:06.288 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 20:25:06.288 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:25:06.288 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 20:25:06.298 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:06.298 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:25:06.778 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:06.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:06.798 -07 000000608 INF: FPGA: Recv EMOUT
17-03-17 20:25:06.798 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:25:06.798 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:25:06.798 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 20:25:06.808 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:06.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:25:06.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127473500124915. ------
17-03-17 20:25:06.808 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:06.808 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17936 mm
17-03-17 20:25:06.808 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:06.808 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:06.808 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:25:06.808 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:25:06.808 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39182, sync = True, waitForSettling = False)
17-03-17 20:25:06.808 -07 000000478 INF: Z Motor: Moving to -0.179364 mm, started at -0.127474 mm, distance = -51.89 um
17-03-17 20:25:06.818 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:06.818 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:06.818 -07 000000501 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:25:06.828 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:06.828 -07 000000608 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:06.828 -07 000000608 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:25:06.828 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:25:06.828 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:25:06.838 -07 000000478 INF: FPGA: Xmit ZDACW 39182\n [Z Motor]
17-03-17 20:25:06.838 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:25:06.848 -07 000000478 INF: FPGA: 'ZDACW 39182' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:25:06.848 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:25:06.858 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:06.858 -07 000000382 INF: FPGA: Recv ZDACR 39182
17-03-17 20:25:06.868 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:06.868 -07 000000478 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:25:07.028 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:25:07.028 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 20:25:07.848 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.019446,
17-03-17 20:25:08.528 -07 000000415 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:25:08.528 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-17 20:25:08.528 -07 000000608 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:25:08.528 -07 000000608 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:25:08.528 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 20:25:11.378 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:11.378 -07 000000415 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:25:11.388 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:11.388 -07 000000608 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:11.408 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:11.408 -07 000000608 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:25:11.408 -07 000000608 INF: Y Motor: Moved to 59.9111 after 4593 ms
17-03-17 20:25:11.408 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179364 mm (DAC = 39182)
17-03-17 20:25:11.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.418 -07 000000608 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:25:11.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:25:11.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.418 -07 000000501 INF: FPGA: Recv ZSGSRD 37211
17-03-17 20:25:11.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.428 -07 000000608 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:25:11.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.438 -07 000000501 INF: FPGA: Recv ZSGSRD 37217
17-03-17 20:25:11.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.448 -07 000000618 INF: FPGA: Recv ZSGSRD 37211
17-03-17 20:25:11.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.458 -07 000000618 INF: FPGA: Recv ZSGSRD 37209
17-03-17 20:25:11.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.468 -07 000000618 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:25:11.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.478 -07 000000501 INF: FPGA: Recv ZSGSRD 37205
17-03-17 20:25:11.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.488 -07 000000501 INF: FPGA: Recv ZSGSRD 37207
17-03-17 20:25:11.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:11.498 -07 000000501 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:25:11.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.508 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:11.508 -07 000000501 INF: FPGA: Recv ZPIEZORD 33673
17-03-17 20:25:11.518 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.979 V. Piezo Error = -7.9 V.
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37210 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37210 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37205 (-178.4 uncal um), Max = 37217 (-178.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37210, posNoise = 7, negNoise = 5
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: After move to -0.179364, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: Settle wait time = 4597 ms, measure time = 103 ms (allowed 150 ms), total time = 4700 ms
17-03-17 20:25:11.518 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:11.568 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4755 ms
17-03-17 20:25:11.568 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:11.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:11.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:11.568 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:11.568 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:25:11.568 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:11.568 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:11.578 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:11.578 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:25:11.598 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:25:11.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:25:11.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:25:11.598 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:25:11.618 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:25:11.618 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:25:11.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:25:11.668 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:25:11.778 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:11.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:11.868 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:25:11.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:25:11.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:25:11.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:25:11.898 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:25:11.898 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:25:11.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:25:11.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:25:11.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:11.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:25:11.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:25:12.098 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:12.098 -07 000000429 INF: Image SNR check: start
17-03-17 20:25:12.098 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:12.108 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:12.108 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:25:12.108 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=64.17]
17-03-17 20:25:12.108 -07 000000429 INF: Autofocus start
17-03-17 20:25:12.108 -07 000000429 INF: MeasureProfile start
17-03-17 20:25:12.118 -07 000000429 INF: MeasureProfile done
17-03-17 20:25:12.118 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:25:12.118 -07 000000429 INF: Autofocus finished
17-03-17 20:25:12.308 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:25:12.308 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:25:12.308 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.17936828580606. ----------
17-03-17 20:25:12.308 -07 000000610 INF: Cycle	38	Tile	1	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:12.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37697, sync = True, waitForSettling = True)
17-03-17 20:25:12.318 -07 000000610 INF: Z Motor: Moving to -0.172566 mm, started at -0.179368 mm, distance = 6.80 um
17-03-17 20:25:12.318 -07 000000610 INF: FPGA: Xmit ZDACW 37697\n [Z Motor]
17-03-17 20:25:12.318 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:25:12.328 -07 000000610 INF: FPGA: 'ZDACW 37697' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:25:12.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:12.328 -07 000000608 INF: FPGA: Recv ZDACR 37697
17-03-17 20:25:12.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.488 -07 000000501 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:25:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.498 -07 000000501 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:25:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.508 -07 000000501 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:25:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.518 -07 000000501 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:25:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36155
17-03-17 20:25:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.538 -07 000000415 INF: FPGA: Recv ZSGSRD 36160
17-03-17 20:25:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:25:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.558 -07 000000431 INF: FPGA: Recv ZSGSRD 36150
17-03-17 20:25:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:25:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:12.578 -07 000000429 INF: FPGA: Recv ZSGSRD 36156
17-03-17 20:25:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:12.588 -07 000000429 INF: FPGA: Recv ZPIEZORD 32241
17-03-17 20:25:12.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:12.598 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.6 V.
17-03-17 20:25:12.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36154 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36152 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36150 (-171.7 uncal um), Max = 36160 (-171.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:25:12.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36154, posNoise = 6, negNoise = 4
17-03-17 20:25:12.598 -07 000000610 INF: Z Motor: After move to -0.172566, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:12.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:25:12.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:12.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:12.598 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:12.598 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:12.598 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:12.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:12.598 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:12.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:12.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:12.598 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:25:12.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:12.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:12.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:12.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:12.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:25:12.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:25:12.628 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:25:12.628 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:12.628 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:12.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:12.638 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:25:12.638 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 20:25:12.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37874 150\n [Camera]
17-03-17 20:25:12.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:13.208 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.026244,
17-03-17 20:25:13.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:13.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:13.258 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:13.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:13.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:13.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:13.268 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:13.268 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:13.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:25:13.268 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:25:13.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37874 799
17-03-17 20:25:13.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:13.668 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:25:13.668 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:25:13.668 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:13.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:25:13.668 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:25:13.668 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:13.668 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:13.668 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:25:13.668 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:25:13.678 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:25:13.798 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:13.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:13.798 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:13.908 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:13.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:13.908 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:13.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:13.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 589594896, 0x0, 391868352) start.
17-03-17 20:25:13.918 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:13.918 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:25:13.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:13.988 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:13.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37874 150' command took 4 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:25:13.988 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172992
17-03-17 20:25:13.988 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17299 mm
17-03-17 20:25:13.988 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:13.998 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:25:13.998 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:25:13.998 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:13.998 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37790, sync = True, waitForSettling = False)
17-03-17 20:25:13.998 -07 000000429 INF: Z Motor: Moving to -0.172992 mm, started at -0.172584 mm, distance = -0.41 um
17-03-17 20:25:13.998 -07 000000627 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:25:14.008 -07 000000429 INF: FPGA: Xmit ZDACW 37790\n [Z Motor]
17-03-17 20:25:14.008 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:14.008 -07 000000608 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:14.008 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:14.008 -07 000000608 INF: Y Motor: Moving 1330 steps2
17-03-17 20:25:14.008 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:25:14.018 -07 000000429 INF: FPGA: 'ZDACW 37790' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:25:14.018 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:14.018 -07 000000478 INF: FPGA: Recv ZDACR 37790
17-03-17 20:25:14.028 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:14.028 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:14.028 -07 000000429 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:25:14.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 589594896, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:25:14.318 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:25:14.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:14.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:25:14.318 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:25:14.318 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:14.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:14.318 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 20:25:14.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:25:14.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 20:25:14.398 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:25:14.398 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:25:14.438 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:14.438 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:25:14.448 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:25:14.448 -07 000000608 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:14.448 -07 000000608 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:25:14.448 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 20:25:15.398 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:15.398 -07 000000429 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:25:15.408 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:15.408 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:15.428 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:15.428 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:25:15.428 -07 000000608 INF: Y Motor: Moved to 60.7334 after 1432 ms (table move)
17-03-17 20:25:15.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172992 mm (DAC = 37790)
17-03-17 20:25:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.428 -07 000000551 INF: FPGA: Recv ZSGSRD 36215
17-03-17 20:25:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36220
17-03-17 20:25:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36221
17-03-17 20:25:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36214
17-03-17 20:25:15.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.468 -07 000000608 INF: FPGA: Recv ZSGSRD 36223
17-03-17 20:25:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36218
17-03-17 20:25:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36220
17-03-17 20:25:15.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.498 -07 000000608 INF: FPGA: Recv ZSGSRD 36212
17-03-17 20:25:15.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.508 -07 000000608 INF: FPGA: Recv ZSGSRD 36214
17-03-17 20:25:15.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.518 -07 000000608 INF: FPGA: Recv ZSGSRD 36217
17-03-17 20:25:15.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:15.528 -07 000000431 INF: FPGA: Recv ZPIEZORD 32352
17-03-17 20:25:15.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.6 V.
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36217 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36218 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36212 (-172.1 uncal um), Max = 36223 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36217, posNoise = 6, negNoise = 5
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: After move to -0.172992, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:25:15.538 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:15.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:25:15.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:15.588 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.172989043149292. ----------
17-03-17 20:25:15.588 -07 000000610 INF: Cycle	38	Tile	2	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:15.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37613, sync = True, waitForSettling = True)
17-03-17 20:25:15.588 -07 000000610 INF: Z Motor: Moving to -0.172181 mm, started at -0.172989 mm, distance = 0.81 um
17-03-17 20:25:15.588 -07 000000610 INF: FPGA: Xmit ZDACW 37613\n [Z Motor]
17-03-17 20:25:15.588 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:25:15.598 -07 000000610 INF: FPGA: 'ZDACW 37613' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:15.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:15.598 -07 000000382 INF: FPGA: Recv ZDACR 37613
17-03-17 20:25:15.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:25:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.768 -07 000000551 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:25:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:25:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.788 -07 000000382 INF: FPGA: Recv ZSGSRD 36094
17-03-17 20:25:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.798 -07 000000551 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:25:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:25:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.818 -07 000000382 INF: FPGA: Recv ZSGSRD 36094
17-03-17 20:25:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:25:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.838 -07 000000431 INF: FPGA: Recv ZSGSRD 36093
17-03-17 20:25:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:15.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36096
17-03-17 20:25:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:15.858 -07 000000382 INF: FPGA: Recv ZPIEZORD 32174
17-03-17 20:25:15.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:15.868 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-17 20:25:15.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36093 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36089 (-171.3 uncal um), Max = 36096 (-171.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:25:15.868 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36093, posNoise = 3, negNoise = 4
17-03-17 20:25:15.868 -07 000000610 INF: Z Motor: After move to -0.172181, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:15.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:25:15.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:15.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:15.868 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:15.868 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:15.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:15.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:15.868 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:15.868 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:15.868 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:15.868 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:15.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:25:15.868 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:15.878 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:15.878 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:15.878 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:15.878 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:15.888 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:25:15.888 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:25:15.888 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:25:15.888 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:25:15.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37790 150\n [Camera]
17-03-17 20:25:16.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:16.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:16.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:16.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:16.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:16.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:25:16.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:16.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:16.508 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:16.508 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:16.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1054609456, 0x0, 418435064) start.
17-03-17 20:25:16.698 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37790 799
17-03-17 20:25:16.778 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:16.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:16.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:16.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:25:16.908 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:25:16.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:16.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1054609456, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:25:16.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:25:16.908 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:16.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:16.908 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:25:16.918 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:16.918 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:25:17.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:17.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:17.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:17.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:17.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:17.058 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:17.058 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:17.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:25:17.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:17.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:25:17.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:17.238 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:17.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37790 150' command took 2 ms to send, 1338 ms to get response, and 1348 ms overall
17-03-17 20:25:17.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:25:17.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172192440843713. ------
17-03-17 20:25:17.248 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17887 mm
17-03-17 20:25:17.248 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:17.248 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:17.248 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:25:17.248 -07 000000627 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:25:17.248 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:17.248 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39074, sync = True, waitForSettling = False)
17-03-17 20:25:17.248 -07 000000478 INF: Z Motor: Moving to -0.178869 mm, started at -0.172192 mm, distance = -6.68 um
17-03-17 20:25:17.258 -07 000000478 INF: FPGA: Xmit ZDACW 39074\n [Z Motor]
17-03-17 20:25:17.258 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:17.258 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:25:17.268 -07 000000478 INF: FPGA: 'ZDACW 39074' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:25:17.268 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:17.268 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:25:17.278 -07 000000627 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:25:17.278 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:17.278 -07 000000627 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:17.278 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:25:17.278 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:25:17.288 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:17.288 -07 000000382 INF: FPGA: Recv ZDACR 39074
17-03-17 20:25:17.298 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:17.298 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:17.298 -07 000000478 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:25:17.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:25:17.448 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:25:17.448 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:17.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:25:17.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:25:17.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:17.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:17.448 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:25:17.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:17.458 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:25:17.478 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:25:17.478 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:25:17.668 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:25:17.668 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:25:17.708 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:17.708 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:25:17.718 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:17.718 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:17.718 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:25:17.718 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 20:25:18.568 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.999021,
17-03-17 20:25:18.668 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:18.668 -07 000000502 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:25:18.678 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.678 -07 000000627 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:18.698 -07 000000627 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:18.698 -07 000000627 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:25:18.698 -07 000000627 INF: Y Motor: Moved to 61.5645 after 1446 ms (table move)
17-03-17 20:25:18.698 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178869 mm (DAC = 39074)
17-03-17 20:25:18.698 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.698 -07 000000415 INF: FPGA: Recv ZSGSRD 37140
17-03-17 20:25:18.708 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:18.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.708 -07 000000627 INF: FPGA: Recv ZSGSRD 37130
17-03-17 20:25:18.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.718 -07 000000501 INF: FPGA: Recv ZSGSRD 37127
17-03-17 20:25:18.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.728 -07 000000627 INF: FPGA: Recv ZSGSRD 37137
17-03-17 20:25:18.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.738 -07 000000501 INF: FPGA: Recv ZSGSRD 37134
17-03-17 20:25:18.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.748 -07 000000627 INF: FPGA: Recv ZSGSRD 37140
17-03-17 20:25:18.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.758 -07 000000415 INF: FPGA: Recv ZSGSRD 37138
17-03-17 20:25:18.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.768 -07 000000551 INF: FPGA: Recv ZSGSRD 37132
17-03-17 20:25:18.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.778 -07 000000415 INF: FPGA: Recv ZSGSRD 37131
17-03-17 20:25:18.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:18.788 -07 000000501 INF: FPGA: Recv ZSGSRD 37130
17-03-17 20:25:18.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.798 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:18.798 -07 000000431 INF: FPGA: Recv ZPIEZORD 33590
17-03-17 20:25:18.808 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37134 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37133 (-178.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37127 (-177.9 uncal um), Max = 37140 (-178.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37134, posNoise = 6, negNoise = 7
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: After move to -0.178869, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:25:18.808 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:18.858 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:25:18.858 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:18.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:18.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:18.858 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:18.858 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:18.858 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:25:18.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:18.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:18.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:25:18.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:18.868 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:25:18.878 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:25:18.878 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:25:18.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:25:18.928 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:25:19.128 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:25:19.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:25:19.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:25:19.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) start.
17-03-17 20:25:19.168 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:25:19.168 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:25:19.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:25:19.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:25:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:25:19.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:25:19.368 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:19.368 -07 000000502 INF: Autofocus start
17-03-17 20:25:19.368 -07 000000502 INF: MeasureProfile start
17-03-17 20:25:19.368 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:19.378 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:19.378 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:25:19.378 -07 000000502 INF: MeasureProfile done
17-03-17 20:25:19.378 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:25:19.378 -07 000000502 INF: Autofocus finished
17-03-17 20:25:19.578 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:25:19.578 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:25:19.578 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178880045683286. ----------
17-03-17 20:25:19.578 -07 000000610 INF: Cycle	38	Tile	3	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:19.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37571, sync = True, waitForSettling = True)
17-03-17 20:25:19.588 -07 000000610 INF: Z Motor: Moving to -0.171989 mm, started at -0.178880 mm, distance = 6.89 um
17-03-17 20:25:19.588 -07 000000610 INF: FPGA: Xmit ZDACW 37571\n [Z Motor]
17-03-17 20:25:19.588 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:25:19.598 -07 000000610 INF: FPGA: 'ZDACW 37571' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:19.598 -07 000000627 INF: FPGA: Recv ZDACR 37571
17-03-17 20:25:19.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.758 -07 000000431 INF: FPGA: Recv ZSGSRD 36062
17-03-17 20:25:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.768 -07 000000429 INF: FPGA: Recv ZSGSRD 36063
17-03-17 20:25:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36061
17-03-17 20:25:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36058
17-03-17 20:25:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.808 -07 000000608 INF: FPGA: Recv ZSGSRD 36068
17-03-17 20:25:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36061
17-03-17 20:25:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.838 -07 000000415 INF: FPGA: Recv ZSGSRD 36063
17-03-17 20:25:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36063
17-03-17 20:25:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36065
17-03-17 20:25:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:19.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36065
17-03-17 20:25:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:19.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:19.908 -07 000000415 INF: FPGA: Recv ZPIEZORD 32186
17-03-17 20:25:19.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:19.918 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.6 V.
17-03-17 20:25:19.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36063 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36063 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36058 (-171.1 uncal um), Max = 36068 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:19.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36063, posNoise = 5, negNoise = 5
17-03-17 20:25:19.918 -07 000000610 INF: Z Motor: After move to -0.171989, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:19.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 20:25:19.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:19.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:19.918 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:19.918 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:19.918 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:19.918 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:19.918 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:19.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:19.918 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:25:19.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:19.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:25:19.918 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:19.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:19.918 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:19.928 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:19.928 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:19.938 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:25:19.938 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:25:19.938 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:25:19.938 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:25:19.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37747 150\n [Camera]
17-03-17 20:25:20.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:20.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:20.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:20.558 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:20.558 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:20.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:25:20.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:20.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:20.558 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:20.558 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:20.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:25:20.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37747 799
17-03-17 20:25:20.898 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:20.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:25:20.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:25:20.938 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:20.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:25:20.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:25:20.938 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:20.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:20.948 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:25:20.948 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:20.958 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:25:21.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:21.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:21.098 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:21.098 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:21.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:25:21.098 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:21.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:21.098 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:21.098 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:21.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:25:21.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:21.288 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:21.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37747 150' command took 2 ms to send, 1344 ms to get response, and 1347 ms overall
17-03-17 20:25:21.288 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171778
17-03-17 20:25:21.288 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17178 mm
17-03-17 20:25:21.288 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:21.288 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:25:21.288 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37525, sync = True, waitForSettling = False)
17-03-17 20:25:21.288 -07 000000382 INF: Z Motor: Moving to -0.171778 mm, started at -0.172000 mm, distance = 0.22 um
17-03-17 20:25:21.288 -07 000000382 INF: FPGA: Xmit ZDACW 37525\n [Z Motor]
17-03-17 20:25:21.298 -07 000000415 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 20:25:21.298 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:21.298 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:25:21.298 -07 000000382 INF: FPGA: 'ZDACW 37525' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:25:21.298 -07 000000501 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:25:21.308 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:21.308 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:21.308 -07 000000415 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:21.308 -07 000000415 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:21.308 -07 000000415 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:25:21.308 -07 000000501 INF: FPGA: Recv ZDACR 37525
17-03-17 20:25:21.318 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:25:21.318 -07 000000382 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:25:21.318 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:21.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:25:21.478 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:25:21.478 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:21.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:21.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:25:21.588 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 20:25:21.588 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:21.598 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 20:25:21.598 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:25:21.598 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:25:21.688 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:25:21.688 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:25:21.728 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:21.728 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:25:21.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:21.738 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:21.738 -07 000000415 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:25:21.738 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 20:25:21.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:21.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:22.688 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:22.688 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:25:22.698 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:22.698 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:22.718 -07 000000415 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:22.718 -07 000000415 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:22.718 -07 000000415 INF: Y Motor: Moved to 62.3955 after 1422 ms (table move)
17-03-17 20:25:22.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171778 mm (DAC = 37525)
17-03-17 20:25:22.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.718 -07 000000478 INF: FPGA: Recv ZSGSRD 36028
17-03-17 20:25:22.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:22.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.728 -07 000000502 INF: FPGA: Recv ZSGSRD 36027
17-03-17 20:25:22.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.738 -07 000000382 INF: FPGA: Recv ZSGSRD 36026
17-03-17 20:25:22.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.748 -07 000000551 INF: FPGA: Recv ZSGSRD 36043
17-03-17 20:25:22.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.758 -07 000000608 INF: FPGA: Recv ZSGSRD 36030
17-03-17 20:25:22.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.768 -07 000000448 INF: FPGA: Recv ZSGSRD 36038
17-03-17 20:25:22.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36030
17-03-17 20:25:22.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.788 -07 000000551 INF: FPGA: Recv ZSGSRD 36022
17-03-17 20:25:22.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36031
17-03-17 20:25:22.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:22.808 -07 000000478 INF: FPGA: Recv ZSGSRD 36029
17-03-17 20:25:22.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:22.818 -07 000000012 INF: FPGA: Recv ZPIEZORD 32114
17-03-17 20:25:22.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.7 V.
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36030 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36030 (-170.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36022 (-170.9 uncal um), Max = 36043 (-171.0 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36030, posNoise = 13, negNoise = 8
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: After move to -0.171778, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 108 ms (allowed 150 ms), total time = 1532 ms
17-03-17 20:25:22.828 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:22.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:25:22.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:22.878 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171787715478782. ----------
17-03-17 20:25:22.878 -07 000000610 INF: Cycle	38	Tile	4	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:22.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37348, sync = True, waitForSettling = True)
17-03-17 20:25:22.878 -07 000000610 INF: Z Motor: Moving to -0.170968 mm, started at -0.171788 mm, distance = 0.82 um
17-03-17 20:25:22.878 -07 000000610 INF: FPGA: Xmit ZDACW 37348\n [Z Motor]
17-03-17 20:25:22.878 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:22.888 -07 000000610 INF: FPGA: 'ZDACW 37348' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:22.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:22.888 -07 000000618 INF: FPGA: Recv ZDACR 37348
17-03-17 20:25:22.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:22.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35906
17-03-17 20:25:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.058 -07 000000618 INF: FPGA: Recv ZSGSRD 35907
17-03-17 20:25:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.068 -07 000000551 INF: FPGA: Recv ZSGSRD 35904
17-03-17 20:25:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.078 -07 000000618 INF: FPGA: Recv ZSGSRD 35910
17-03-17 20:25:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.088 -07 000000382 INF: FPGA: Recv ZSGSRD 35903
17-03-17 20:25:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.098 -07 000000608 INF: FPGA: Recv ZSGSRD 35902
17-03-17 20:25:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35906
17-03-17 20:25:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.118 -07 000000012 INF: FPGA: Recv ZSGSRD 35903
17-03-17 20:25:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35902
17-03-17 20:25:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:23.138 -07 000000618 INF: FPGA: Recv ZSGSRD 35908
17-03-17 20:25:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:23.148 -07 000000502 INF: FPGA: Recv ZPIEZORD 31962
17-03-17 20:25:23.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:23.158 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.7 V.
17-03-17 20:25:23.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35905 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35902 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:25:23.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 5, negNoise = 3
17-03-17 20:25:23.158 -07 000000610 INF: Z Motor: After move to -0.170968, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:23.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:25:23.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:23.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:23.158 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:23.158 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:23.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:23.158 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:23.158 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:23.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:23.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:23.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:23.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:23.158 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:23.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:23.168 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:23.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:23.168 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:23.178 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:25:23.178 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:25:23.178 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:25:23.178 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:25:23.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37525 150\n [Camera]
17-03-17 20:25:23.378 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:23.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:23.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:23.788 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:23.798 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:23.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:23.798 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:23.798 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:23.798 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:25:23.808 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:23.808 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:25:23.928 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.003063,
17-03-17 20:25:23.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37525 799
17-03-17 20:25:24.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:24.178 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:25:24.178 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:25:24.178 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:24.178 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:24.178 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:25:24.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:25:24.178 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:25:24.178 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:24.178 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:24.188 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:25:24.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:24.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:24.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:24.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:24.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:24.338 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:24.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:24.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:25:24.348 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:24.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:25:24.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:24.528 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:24.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37525 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:25:24.528 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171410
17-03-17 20:25:24.528 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17141 mm
17-03-17 20:25:24.528 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:24.528 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:25:24.528 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:25:24.528 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:24.528 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37444, sync = True, waitForSettling = False)
17-03-17 20:25:24.528 -07 000000551 INF: Z Motor: Moving to -0.171408 mm, started at -0.170985 mm, distance = -0.42 um
17-03-17 20:25:24.538 -07 000000551 INF: FPGA: Xmit ZDACW 37444\n [Z Motor]
17-03-17 20:25:24.538 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:25:24.538 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:25:24.538 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:24.538 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:24.538 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:25:24.538 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:25:24.548 -07 000000551 INF: FPGA: 'ZDACW 37444' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:24.548 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:24.558 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:24.558 -07 000000415 INF: FPGA: Recv ZDACR 37444
17-03-17 20:25:24.568 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:24.568 -07 000000551 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 20:25:24.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:25:24.718 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:25:24.718 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:24.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:25:24.718 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:25:24.718 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:24.718 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:24.718 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:25:24.728 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:24.728 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:25:24.918 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:25:24.918 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:25:24.958 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:24.958 -07 000000448 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:25:24.968 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:24.968 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:24.968 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:25:24.968 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.837 mm, average velocity = 2.169 mm/sec
17-03-17 20:25:25.918 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:25.918 -07 000000502 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:25:25.928 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:25.928 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:25.948 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:25.948 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:25.948 -07 000000012 INF: Y Motor: Moved to 63.2241 after 1414 ms (table move)
17-03-17 20:25:25.948 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171408 mm (DAC = 37444)
17-03-17 20:25:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.948 -07 000000415 INF: FPGA: Recv ZSGSRD 35969
17-03-17 20:25:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:25.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.958 -07 000000502 INF: FPGA: Recv ZSGSRD 35969
17-03-17 20:25:25.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.968 -07 000000415 INF: FPGA: Recv ZSGSRD 35968
17-03-17 20:25:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35974
17-03-17 20:25:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35981
17-03-17 20:25:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:25.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35973
17-03-17 20:25:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.008 -07 000000502 INF: FPGA: Recv ZSGSRD 35977
17-03-17 20:25:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35968
17-03-17 20:25:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35970
17-03-17 20:25:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.038 -07 000000502 INF: FPGA: Recv ZSGSRD 35968
17-03-17 20:25:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:26.048 -07 000000502 INF: FPGA: Recv ZPIEZORD 32034
17-03-17 20:25:26.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.7 V.
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35970 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35968 (-170.5 uncal um), Max = 35981 (-170.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 9, negNoise = 4
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: After move to -0.171408, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 105 ms (allowed 150 ms), total time = 1520 ms
17-03-17 20:25:26.058 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:26.108 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 20:25:26.108 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:26.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.17141511117456. ----------
17-03-17 20:25:26.108 -07 000000610 INF: Cycle	38	Tile	5	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:26.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37268, sync = True, waitForSettling = True)
17-03-17 20:25:26.108 -07 000000610 INF: Z Motor: Moving to -0.170602 mm, started at -0.171415 mm, distance = 0.81 um
17-03-17 20:25:26.108 -07 000000610 INF: FPGA: Xmit ZDACW 37268\n [Z Motor]
17-03-17 20:25:26.108 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:25:26.118 -07 000000610 INF: FPGA: 'ZDACW 37268' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:26.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:26.118 -07 000000431 INF: FPGA: Recv ZDACR 37268
17-03-17 20:25:26.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35844
17-03-17 20:25:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35851
17-03-17 20:25:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35843
17-03-17 20:25:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.308 -07 000000431 INF: FPGA: Recv ZSGSRD 35853
17-03-17 20:25:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.318 -07 000000431 INF: FPGA: Recv ZSGSRD 35851
17-03-17 20:25:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.328 -07 000000382 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:25:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:25:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.348 -07 000000431 INF: FPGA: Recv ZSGSRD 35842
17-03-17 20:25:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35847
17-03-17 20:25:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:26.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35839
17-03-17 20:25:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:26.378 -07 000000415 INF: FPGA: Recv ZPIEZORD 31888
17-03-17 20:25:26.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:26.388 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.7 V.
17-03-17 20:25:26.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35846 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35846 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35853 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:25:26.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35846, posNoise = 7, negNoise = 7
17-03-17 20:25:26.388 -07 000000610 INF: Z Motor: After move to -0.170602, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:26.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:25:26.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:26.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:26.388 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:26.388 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:26.388 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:26.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:26.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:26.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:26.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:26.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:26.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:26.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:26.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:25:26.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:26.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:26.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:26.418 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 20:25:26.418 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:25:26.418 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:25:26.418 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:25:26.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37444 150\n [Camera]
17-03-17 20:25:26.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:26.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:27.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:27.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:27.028 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:27.028 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:27.028 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 20:25:27.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:27.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:27.038 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:27.038 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:27.038 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:25:27.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37444 799
17-03-17 20:25:27.378 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:27.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:25:27.408 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:25:27.408 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:27.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:25:27.408 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:25:27.408 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:27.418 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:27.418 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:25:27.568 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 153 ms.
17-03-17 20:25:27.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-17 20:25:27.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:27.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:27.578 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:27.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:27.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:27.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:27.578 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:27.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:25:27.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:27.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:25:27.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:25:27.768 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:27.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37444 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:25:27.768 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171062
17-03-17 20:25:27.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17106 mm
17-03-17 20:25:27.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:27.768 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:25:27.768 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:25:27.768 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:27.768 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37368, sync = True, waitForSettling = False)
17-03-17 20:25:27.768 -07 000000448 INF: Z Motor: Moving to -0.171060 mm, started at -0.170606 mm, distance = -0.45 um
17-03-17 20:25:27.768 -07 000000502 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:25:27.778 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:27.778 -07 000000448 INF: FPGA: Xmit ZDACW 37368\n [Z Motor]
17-03-17 20:25:27.778 -07 000000551 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:27.778 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:27.778 -07 000000551 INF: Y Motor: Moving 1342 steps-17
17-03-17 20:25:27.778 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:27.788 -07 000000448 INF: FPGA: 'ZDACW 37368' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:25:27.788 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:27.788 -07 000000431 INF: FPGA: Recv ZDACR 37368
17-03-17 20:25:27.798 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:27.798 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:27.798 -07 000000448 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:25:27.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:25:27.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:25:27.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:27.968 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:25:27.968 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:25:27.968 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:27.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 20:25:27.968 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:25:27.968 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:25:27.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:25:28.168 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:25:28.168 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:25:28.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:28.218 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:25:28.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:28.228 -07 000000551 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:28.228 -07 000000551 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 20:25:28.228 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 20:25:29.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:29.178 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:25:29.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.188 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:29.198 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:29.208 -07 000000551 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:25:29.208 -07 000000551 INF: Y Motor: Moved to 64.0571 after 1433 ms (table move)
17-03-17 20:25:29.208 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171060 mm (DAC = 37368)
17-03-17 20:25:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:25:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:25:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35923
17-03-17 20:25:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.228 -07 000000618 INF: FPGA: Recv ZSGSRD 35922
17-03-17 20:25:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35923
17-03-17 20:25:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35918
17-03-17 20:25:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35922
17-03-17 20:25:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35916
17-03-17 20:25:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.288 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.98264,
17-03-17 20:25:29.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35918
17-03-17 20:25:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:29.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35917
17-03-17 20:25:29.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:25:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:29.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:29.358 -07 000000012 INF: FPGA: Recv ZPIEZORD 32006
17-03-17 20:25:29.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.6 V.
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 5, negNoise = 7
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: After move to -0.171060, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 158 ms (allowed 150 ms), total time = 1593 ms
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 20:25:29.368 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:25:29.368 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:29.368 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171068203718905. ----------
17-03-17 20:25:29.368 -07 000000610 INF: Cycle	38	Tile	6	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37192, sync = True, waitForSettling = True)
17-03-17 20:25:29.368 -07 000000610 INF: Z Motor: Moving to -0.170254 mm, started at -0.171068 mm, distance = 0.81 um
17-03-17 20:25:29.368 -07 000000610 INF: FPGA: Xmit ZDACW 37192\n [Z Motor]
17-03-17 20:25:29.368 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:25:29.378 -07 000000610 INF: FPGA: 'ZDACW 37192' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:29.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:29.378 -07 000000478 INF: FPGA: Recv ZDACR 37192
17-03-17 20:25:29.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.538 -07 000000502 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:25:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:25:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35797
17-03-17 20:25:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35785
17-03-17 20:25:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:25:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:25:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.598 -07 000000618 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:25:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.608 -07 000000608 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:25:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:25:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:29.628 -07 000000012 INF: FPGA: Recv ZSGSRD 35796
17-03-17 20:25:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:29.638 -07 000000618 INF: FPGA: Recv ZPIEZORD 31819
17-03-17 20:25:29.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:29.648 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 20:25:29.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35794 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35785 (-169.3 uncal um), Max = 35797 (-169.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:25:29.648 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35794, posNoise = 3, negNoise = 9
17-03-17 20:25:29.648 -07 000000610 INF: Z Motor: After move to -0.170254, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:29.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:25:29.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:29.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:29.648 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:29.648 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:29.648 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:29.648 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:29.648 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:29.648 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:29.648 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:25:29.648 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:29.648 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:29.648 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:29.658 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:29.658 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:29.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:25:29.658 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:29.668 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:25:29.668 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:25:29.668 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:25:29.668 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:25:29.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37368 150\n [Camera]
17-03-17 20:25:29.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:30.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:30.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:30.288 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:30.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:30.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:30.288 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:30.288 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:30.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:25:30.288 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:30.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:25:30.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37368 799
17-03-17 20:25:30.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:30.668 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:25:30.668 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:25:30.668 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:30.668 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:25:30.668 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:25:30.668 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:30.668 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:30.668 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:25:30.678 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:30.678 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:25:30.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:30.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:30.828 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:30.828 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:30.828 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:25:30.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:30.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:30.838 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:30.838 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:30.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:25:31.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:31.018 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:31.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37368 150' command took 2 ms to send, 1338 ms to get response, and 1347 ms overall
17-03-17 20:25:31.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:25:31.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170271601413327. ------
17-03-17 20:25:31.138 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:31.138 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17671 mm
17-03-17 20:25:31.138 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:31.138 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:31.148 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:25:31.148 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:25:31.148 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:31.148 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38603, sync = True, waitForSettling = False)
17-03-17 20:25:31.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:31.148 -07 000000618 INF: Z Motor: Moving to -0.176713 mm, started at -0.170272 mm, distance = -6.44 um
17-03-17 20:25:31.148 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:25:31.158 -07 000000618 INF: FPGA: Xmit ZDACW 38603\n [Z Motor]
17-03-17 20:25:31.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:31.158 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:31.158 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:31.158 -07 000000382 INF: Y Motor: Moving 1337 steps-12
17-03-17 20:25:31.158 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:31.168 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:25:31.168 -07 000000618 INF: FPGA: 'ZDACW 38603' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:25:31.178 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:31.188 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:31.188 -07 000000502 INF: FPGA: Recv ZDACR 38603
17-03-17 20:25:31.198 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:31.198 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:25:31.208 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:25:31.208 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:25:31.208 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:31.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:25:31.218 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:25:31.218 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:31.218 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:31.218 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:25:31.218 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:31.228 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:25:31.368 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:25:31.368 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 20:25:31.548 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:25:31.548 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:25:31.588 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:31.588 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:25:31.598 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:25:31.598 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:31.598 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:25:31.598 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:25:31.778 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:32.548 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:32.548 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:25:32.558 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:32.558 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:32.578 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:32.578 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:32.578 -07 000000382 INF: Y Motor: Moved to 64.8789 after 1432 ms (table move)
17-03-17 20:25:32.578 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176713 mm (DAC = 38603)
17-03-17 20:25:32.578 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36799
17-03-17 20:25:32.588 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:32.588 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.588 -07 000000618 INF: FPGA: Recv ZSGSRD 36790
17-03-17 20:25:32.598 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.598 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36793
17-03-17 20:25:32.608 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:32.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.608 -07 000000608 INF: FPGA: Recv ZSGSRD 36791
17-03-17 20:25:32.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.618 -07 000000608 INF: FPGA: Recv ZSGSRD 36802
17-03-17 20:25:32.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.628 -07 000000478 INF: FPGA: Recv ZSGSRD 36804
17-03-17 20:25:32.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.638 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.638 -07 000000478 INF: FPGA: Recv ZSGSRD 36798
17-03-17 20:25:32.648 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.648 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.648 -07 000000608 INF: FPGA: Recv ZSGSRD 36796
17-03-17 20:25:32.658 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.658 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.658 -07 000000608 INF: FPGA: Recv ZSGSRD 36797
17-03-17 20:25:32.668 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.668 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:32.668 -07 000000478 INF: FPGA: Recv ZSGSRD 36790
17-03-17 20:25:32.678 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.678 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:32.678 -07 000000478 INF: FPGA: Recv ZPIEZORD 33166
17-03-17 20:25:32.688 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.1 V.
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36796 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36796 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36790 (-175.8 uncal um), Max = 36804 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36796, posNoise = 8, negNoise = 6
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: After move to -0.176713, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:25:32.688 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:32.738 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:25:32.738 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:32.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:32.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:32.738 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:32.738 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:32.738 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:25:32.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:32.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:25:32.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:25:32.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:32.748 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:25:32.758 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:25:32.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:25:32.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:25:32.808 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:25:33.008 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:25:33.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:25:33.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:25:33.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:25:33.048 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:25:33.048 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:25:33.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 20:25:33.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:25:33.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:33.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:25:33.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:25:33.148 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:33.148 -07 000000618 INF: Autofocus start
17-03-17 20:25:33.148 -07 000000618 INF: MeasureProfile start
17-03-17 20:25:33.148 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:33.158 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:33.158 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:25:33.158 -07 000000618 INF: MeasureProfile done
17-03-17 20:25:33.158 -07 000000618 INF: X=80  Z correction [um]=0.337546
17-03-17 20:25:33.158 -07 000000618 INF: Autofocus finished
17-03-17 20:25:33.358 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:25:33.358 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:25:33.358 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176708661979371. ----------
17-03-17 20:25:33.358 -07 000000610 INF: Cycle	38	Tile	7	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:33.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37190, sync = True, waitForSettling = True)
17-03-17 20:25:33.368 -07 000000610 INF: Z Motor: Moving to -0.170245 mm, started at -0.176709 mm, distance = 6.46 um
17-03-17 20:25:33.368 -07 000000610 INF: FPGA: Xmit ZDACW 37190\n [Z Motor]
17-03-17 20:25:33.368 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:33.378 -07 000000610 INF: FPGA: 'ZDACW 37190' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:33.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:33.378 -07 000000502 INF: FPGA: Recv ZDACR 37190
17-03-17 20:25:33.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.538 -07 000000502 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:25:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35789
17-03-17 20:25:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.558 -07 000000502 INF: FPGA: Recv ZSGSRD 35790
17-03-17 20:25:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:25:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.578 -07 000000502 INF: FPGA: Recv ZSGSRD 35792
17-03-17 20:25:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:25:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.598 -07 000000448 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:25:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.608 -07 000000448 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:25:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.618 -07 000000448 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:25:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:33.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:25:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:33.638 -07 000000382 INF: FPGA: Recv ZPIEZORD 31819
17-03-17 20:25:33.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:33.648 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 20:25:33.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35791 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35791 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35788 (-169.4 uncal um), Max = 35794 (-169.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:25:33.648 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35791, posNoise = 3, negNoise = 3
17-03-17 20:25:33.648 -07 000000610 INF: Z Motor: After move to -0.170245, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:33.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:25:33.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:33.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:33.648 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:33.648 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:33.648 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:33.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:33.648 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:33.648 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:33.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:25:33.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:33.648 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:33.648 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:33.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:33.658 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:33.658 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:33.658 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:33.668 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:25:33.668 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:25:33.668 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:25:33.668 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:25:33.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37366 150\n [Camera]
17-03-17 20:25:33.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:25:34.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:34.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:34.288 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:34.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:34.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:34.288 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:34.288 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:34.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:25:34.298 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:34.298 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:25:34.478 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37366 799
17-03-17 20:25:34.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:34.668 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.983999,
17-03-17 20:25:34.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:25:34.668 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:25:34.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:34.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:25:34.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:25:34.668 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:34.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:34.668 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:25:34.668 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:34.678 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:25:34.828 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:34.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:34.828 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:34.828 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:34.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:34.828 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:34.838 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:34.838 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:25:34.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:34.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:25:35.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:35.018 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:35.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37366 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-17 20:25:35.018 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170697
17-03-17 20:25:35.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17070 mm
17-03-17 20:25:35.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:35.028 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:25:35.028 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:25:35.028 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:35.028 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37289, sync = True, waitForSettling = False)
17-03-17 20:25:35.028 -07 000000478 INF: Z Motor: Moving to -0.170698 mm, started at -0.170252 mm, distance = -0.45 um
17-03-17 20:25:35.028 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:25:35.038 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:25:35.038 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:35.038 -07 000000478 INF: FPGA: Xmit ZDACW 37289\n [Z Motor]
17-03-17 20:25:35.038 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:25:35.038 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:35.038 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:25:35.048 -07 000000478 INF: FPGA: 'ZDACW 37289' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:25:35.048 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:35.058 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:35.058 -07 000000502 INF: FPGA: Recv ZDACR 37289
17-03-17 20:25:35.068 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:35.068 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:25:35.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:25:35.228 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:25:35.228 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:35.228 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:25:35.228 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:25:35.228 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:35.228 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:35.228 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:35.228 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:25:35.238 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:25:35.418 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:25:35.418 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:25:35.458 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:35.458 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:25:35.468 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:35.468 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:35.468 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:25:35.468 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 20:25:36.418 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:36.418 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:25:36.428 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:36.428 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:36.448 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:36.448 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:36.448 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1421 ms (table move)
17-03-17 20:25:36.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170698 mm (DAC = 37289)
17-03-17 20:25:36.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.458 -07 000000547 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:25:36.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:25:36.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.458 -07 000000448 INF: FPGA: Recv ZSGSRD 35860
17-03-17 20:25:36.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:36.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35861
17-03-17 20:25:36.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.478 -07 000000448 INF: FPGA: Recv ZSGSRD 35868
17-03-17 20:25:36.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35864
17-03-17 20:25:36.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.498 -07 000000502 INF: FPGA: Recv ZSGSRD 35863
17-03-17 20:25:36.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.508 -07 000000547 INF: FPGA: Recv ZSGSRD 35857
17-03-17 20:25:36.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35858
17-03-17 20:25:36.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35864
17-03-17 20:25:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.538 -07 000000478 INF: FPGA: Recv ZSGSRD 35864
17-03-17 20:25:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:36.548 -07 000000502 INF: FPGA: Recv ZPIEZORD 31933
17-03-17 20:25:36.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -8.7 V.
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35863 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35864 (-169.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35857 (-169.8 uncal um), Max = 35872 (-169.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35863, posNoise = 9, negNoise = 6
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: After move to -0.170698, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 103 ms (allowed 150 ms), total time = 1527 ms
17-03-17 20:25:36.558 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:36.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 20:25:36.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:36.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.170714872051108. ----------
17-03-17 20:25:36.608 -07 000000610 INF: Cycle	38	Tile	8	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:36.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37112, sync = True, waitForSettling = True)
17-03-17 20:25:36.608 -07 000000610 INF: Z Motor: Moving to -0.169888 mm, started at -0.170715 mm, distance = 0.83 um
17-03-17 20:25:36.608 -07 000000610 INF: FPGA: Xmit ZDACW 37112\n [Z Motor]
17-03-17 20:25:36.618 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:25:36.618 -07 000000610 INF: FPGA: 'ZDACW 37112' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:36.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:36.618 -07 000000547 INF: FPGA: Recv ZDACR 37112
17-03-17 20:25:36.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.778 -07 000000547 INF: FPGA: Recv ZSGSRD 35741
17-03-17 20:25:36.778 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:36.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.788 -07 000000502 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:25:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.798 -07 000000448 INF: FPGA: Recv ZSGSRD 35741
17-03-17 20:25:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:25:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.818 -07 000000448 INF: FPGA: Recv ZSGSRD 35739
17-03-17 20:25:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35733
17-03-17 20:25:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.838 -07 000000448 INF: FPGA: Recv ZSGSRD 35734
17-03-17 20:25:36.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35738
17-03-17 20:25:36.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.858 -07 000000448 INF: FPGA: Recv ZSGSRD 35733
17-03-17 20:25:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:36.868 -07 000000448 INF: FPGA: Recv ZSGSRD 35735
17-03-17 20:25:36.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:36.878 -07 000000431 INF: FPGA: Recv ZPIEZORD 31765
17-03-17 20:25:36.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:36.888 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -8.8 V.
17-03-17 20:25:36.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35736 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35734 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35733 (-169.0 uncal um), Max = 35741 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:25:36.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35736, posNoise = 5, negNoise = 3
17-03-17 20:25:36.888 -07 000000610 INF: Z Motor: After move to -0.169888, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:36.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:25:36.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:36.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:36.888 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:36.888 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:36.888 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:36.888 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:36.888 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:36.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:36.888 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:25:36.888 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:36.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:25:36.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:36.898 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:36.898 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:36.898 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:36.898 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:36.908 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:25:36.908 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:25:36.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:25:36.908 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:25:36.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37289 150\n [Camera]
17-03-17 20:25:37.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:37.518 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:37.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:37.518 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:37.528 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:37.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:25:37.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:37.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:37.528 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:37.528 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:37.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:25:37.718 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37289 799
17-03-17 20:25:37.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:37.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:25:37.898 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:25:37.898 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:37.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:25:37.898 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:25:37.898 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:37.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:37.908 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:37.908 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:25:37.908 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:25:38.068 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:38.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:38.068 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:38.068 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:38.068 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:25:38.068 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:38.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:38.068 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:38.068 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:38.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:25:38.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:25:38.258 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:38.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37289 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:25:38.258 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170298
17-03-17 20:25:38.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17030 mm
17-03-17 20:25:38.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:38.258 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:25:38.258 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37201, sync = True, waitForSettling = False)
17-03-17 20:25:38.258 -07 000000431 INF: Z Motor: Moving to -0.170295 mm, started at -0.169899 mm, distance = -0.40 um
17-03-17 20:25:38.258 -07 000000431 INF: FPGA: Xmit ZDACW 37201\n [Z Motor]
17-03-17 20:25:38.258 -07 000000547 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:25:38.268 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:38.268 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:25:38.268 -07 000000431 INF: FPGA: 'ZDACW 37201' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 20:25:38.268 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:25:38.278 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:25:38.278 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:38.278 -07 000000547 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:38.278 -07 000000547 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:25:38.278 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:38.278 -07 000000415 INF: FPGA: Recv ZDACR 37201
17-03-17 20:25:38.288 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:25:38.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:25:38.288 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:38.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:25:38.468 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:25:38.468 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:38.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:25:38.468 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:25:38.468 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:38.468 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:38.478 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:38.478 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:25:38.478 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:25:38.658 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:25:38.658 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 20:25:38.698 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:38.698 -07 000000478 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:25:38.708 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:38.708 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:38.708 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:25:38.708 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 20:25:39.658 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:39.658 -07 000000415 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:25:39.668 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:39.668 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:39.688 -07 000000547 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:39.688 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:39.688 -07 000000547 INF: Y Motor: Moved to 66.5391 after 1426 ms (table move)
17-03-17 20:25:39.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170295 mm (DAC = 37201)
17-03-17 20:25:39.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.688 -07 000000547 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:25:39.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:25:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.698 -07 000000547 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:25:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.718 -07 000000502 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:25:39.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:39.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.728 -07 000000547 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:25:39.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.738 -07 000000547 INF: FPGA: Recv ZSGSRD 35799
17-03-17 20:25:39.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.748 -07 000000547 INF: FPGA: Recv ZSGSRD 35793
17-03-17 20:25:39.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.758 -07 000000547 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:25:39.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.768 -07 000000547 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:25:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35798
17-03-17 20:25:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:39.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35801
17-03-17 20:25:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:39.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:39.798 -07 000000618 INF: FPGA: Recv ZPIEZORD 31858
17-03-17 20:25:39.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35798 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35793 (-169.4 uncal um), Max = 35807 (-169.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35798, posNoise = 9, negNoise = 5
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: After move to -0.170295, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 114 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:25:39.808 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:39.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 20:25:39.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:39.848 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.170297298261894. ----------
17-03-17 20:25:39.848 -07 000000610 INF: Cycle	38	Tile	9	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:39.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37025, sync = True, waitForSettling = True)
17-03-17 20:25:39.848 -07 000000610 INF: Z Motor: Moving to -0.169490 mm, started at -0.170297 mm, distance = 0.81 um
17-03-17 20:25:39.848 -07 000000610 INF: FPGA: Xmit ZDACW 37025\n [Z Motor]
17-03-17 20:25:39.848 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:25:39.858 -07 000000610 INF: FPGA: 'ZDACW 37025' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:39.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:39.858 -07 000000551 INF: FPGA: Recv ZDACR 37025
17-03-17 20:25:39.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:39.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.028 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.990831,
17-03-17 20:25:40.028 -07 000000448 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:25:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.048 -07 000000382 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:25:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.058 -07 000000415 INF: FPGA: Recv ZSGSRD 35665
17-03-17 20:25:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.088 -07 000000382 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:25:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:25:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.108 -07 000000448 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:25:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:25:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.128 -07 000000478 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:25:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35672
17-03-17 20:25:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:25:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:40.158 -07 000000448 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:25:40.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:40.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:40.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 31674
17-03-17 20:25:40.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:40.178 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.8 V.
17-03-17 20:25:40.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35673 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35674 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35665 (-168.6 uncal um), Max = 35679 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:25:40.178 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35673, posNoise = 6, negNoise = 8
17-03-17 20:25:40.178 -07 000000610 INF: Z Motor: After move to -0.169490, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:40.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 20:25:40.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:40.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:40.178 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:40.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:40.178 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:40.178 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:40.178 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:40.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:40.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:40.178 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:40.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:25:40.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:40.188 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:25:40.188 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:40.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:40.188 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:40.198 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:25:40.198 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:25:40.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:25:40.198 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:25:40.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37201 150\n [Camera]
17-03-17 20:25:40.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:40.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:40.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:40.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:40.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:40.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:25:40.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:40.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:40.818 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:40.948 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:40.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 594262456, 0x0, 418435064) start.
17-03-17 20:25:41.008 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37201 799
17-03-17 20:25:41.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:41.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:25:41.208 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:25:41.208 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:41.208 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:25:41.208 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:25:41.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 594262456, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:25:41.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:25:41.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:41.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:41.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 20:25:41.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:41.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:41.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:41.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:41.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:41.358 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:41.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:41.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:25:41.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:41.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:25:41.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:41.548 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:41.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37201 150' command took 2 ms to send, 1335 ms to get response, and 1349 ms overall
17-03-17 20:25:41.548 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170324
17-03-17 20:25:41.548 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17032 mm
17-03-17 20:25:41.548 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:41.558 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:25:41.558 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:25:41.558 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:41.558 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37207, sync = True, waitForSettling = False)
17-03-17 20:25:41.558 -07 000000382 INF: Z Motor: Moving to -0.170323 mm, started at -0.169494 mm, distance = -0.83 um
17-03-17 20:25:41.558 -07 000000448 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:25:41.568 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:41.568 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:41.568 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:41.568 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:25:41.568 -07 000000382 INF: FPGA: Xmit ZDACW 37207\n [Z Motor]
17-03-17 20:25:41.568 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:41.578 -07 000000382 INF: FPGA: 'ZDACW 37207' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:25:41.578 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:41.578 -07 000000478 INF: FPGA: Recv ZDACR 37207
17-03-17 20:25:41.588 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:41.588 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:41.588 -07 000000382 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 20:25:41.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:25:41.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:25:41.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:41.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:41.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:25:41.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:25:41.748 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:25:41.748 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:41.748 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:41.758 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:25:41.778 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:41.958 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:25:41.958 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:25:41.998 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:41.998 -07 000000415 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:25:42.008 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:42.008 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:42.008 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:25:42.008 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-17 20:25:42.958 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:42.958 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:25:42.968 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:42.968 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:42.988 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:42.988 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:42.988 -07 000000012 INF: Y Motor: Moved to 67.3721 after 1430 ms (table move)
17-03-17 20:25:42.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170323 mm (DAC = 37207)
17-03-17 20:25:42.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:42.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35799
17-03-17 20:25:42.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:42.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35805
17-03-17 20:25:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.008 -07 000000501 INF: FPGA: Recv ZSGSRD 35809
17-03-17 20:25:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.018 -07 000000012 INF: FPGA: Recv ZSGSRD 35805
17-03-17 20:25:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35808
17-03-17 20:25:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.038 -07 000000012 INF: FPGA: Recv ZSGSRD 35800
17-03-17 20:25:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35808
17-03-17 20:25:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.058 -07 000000012 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:25:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:25:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.078 -07 000000012 INF: FPGA: Recv ZSGSRD 35805
17-03-17 20:25:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:43.088 -07 000000501 INF: FPGA: Recv ZPIEZORD 31874
17-03-17 20:25:43.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35805 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35809 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 5, negNoise = 9
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: After move to -0.170323, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:25:43.098 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:43.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:25:43.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:43.148 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.170335843534744. ----------
17-03-17 20:25:43.148 -07 000000610 INF: Cycle	38	Tile	10	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:43.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37030, sync = True, waitForSettling = True)
17-03-17 20:25:43.148 -07 000000610 INF: Z Motor: Moving to -0.169512 mm, started at -0.170336 mm, distance = 0.82 um
17-03-17 20:25:43.148 -07 000000610 INF: FPGA: Xmit ZDACW 37030\n [Z Motor]
17-03-17 20:25:43.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:25:43.158 -07 000000610 INF: FPGA: 'ZDACW 37030' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:25:43.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:43.158 -07 000000478 INF: FPGA: Recv ZDACR 37030
17-03-17 20:25:43.168 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:43.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35681
17-03-17 20:25:43.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:25:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.338 -07 000000502 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:25:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.348 -07 000000478 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:25:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:25:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.368 -07 000000478 INF: FPGA: Recv ZSGSRD 35673
17-03-17 20:25:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.378 -07 000000012 INF: FPGA: Recv ZSGSRD 35672
17-03-17 20:25:43.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:25:43.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:25:43.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:43.408 -07 000000478 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:25:43.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:43.418 -07 000000502 INF: FPGA: Recv ZPIEZORD 31688
17-03-17 20:25:43.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:43.428 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.8 V.
17-03-17 20:25:43.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35684 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:25:43.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 6, negNoise = 6
17-03-17 20:25:43.428 -07 000000610 INF: Z Motor: After move to -0.169512, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:43.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:25:43.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:43.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:43.428 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:43.428 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:43.428 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:43.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:43.428 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:43.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:43.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:25:43.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:43.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:43.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:43.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:43.438 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:43.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:43.438 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:43.448 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:25:43.448 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:25:43.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:25:43.448 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:25:43.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37207 150\n [Camera]
17-03-17 20:25:43.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:44.058 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:44.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:44.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:44.068 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:44.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:44.068 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:44.178 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:44.178 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:25:44.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:44.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:25:44.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37207 799
17-03-17 20:25:44.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:44.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:25:44.558 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:25:44.558 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:44.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:25:44.558 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:25:44.558 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:44.558 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:44.558 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 20:25:44.558 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:44.568 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 20:25:44.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:44.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:44.608 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:44.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:44.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:44.608 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:44.608 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:44.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:25:44.608 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:44.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:25:44.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:25:44.798 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:44.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37207 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-17 20:25:44.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:25:44.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169526392804882. ------
17-03-17 20:25:44.798 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:44.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:25:44.988 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:25:44.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:44.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:25:44.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:25:44.988 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:44.988 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:25:44.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:25:44.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:25:44.998 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:25:45.008 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17596 mm
17-03-17 20:25:45.008 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:45.008 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:45.008 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 206 ms to get response, and 209 ms overall
17-03-17 20:25:45.008 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:25:45.008 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:25:45.008 -07 000000627 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:25:45.018 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:45.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38437, sync = True, waitForSettling = False)
17-03-17 20:25:45.738 -07 000000431 INF: Z Motor: Moving to -0.175953 mm, started at -0.169526 mm, distance = -6.43 um
17-03-17 20:25:45.738 -07 000000431 INF: FPGA: Xmit ZDACW 38437\n [Z Motor]
17-03-17 20:25:46.738 -07 000000608 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:25:46.738 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:25:46.738 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:25:46.738 -07 000000431 INF: FPGA: 'ZDACW 38437' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:25:46.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1710 ms to get response, and 1722 ms overall
17-03-17 20:25:46.738 -07 000000627 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:46.738 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:46.738 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1720 ms to get response, and 1723 ms overall
17-03-17 20:25:46.738 -07 000000608 INF: FPGA: Recv ZDACR 38437
17-03-17 20:25:46.738 -07 000000627 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:46.738 -07 000000627 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:25:46.748 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:46.748 -07 000000431 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 20:25:46.748 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:46.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:46.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:47.118 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:25:47.118 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:25:47.158 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:47.158 -07 000000415 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:25:47.168 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:47.168 -07 000000627 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:47.168 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:25:47.168 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.841 mm, average velocity = 2.200 mm/sec
17-03-17 20:25:47.358 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.990831,
17-03-17 20:25:48.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:48.118 -07 000000415 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:25:48.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:48.128 -07 000000627 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:48.148 -07 000000627 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:48.148 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:48.148 -07 000000627 INF: Y Motor: Moved to 68.2051 after 3132 ms (table move)
17-03-17 20:25:48.148 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175953 mm (DAC = 38437)
17-03-17 20:25:48.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36688
17-03-17 20:25:48.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:48.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.158 -07 000000627 INF: FPGA: Recv ZSGSRD 36685
17-03-17 20:25:48.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36672
17-03-17 20:25:48.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.178 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:25:48.188 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.188 -07 000000415 INF: FPGA: Recv ZSGSRD 36679
17-03-17 20:25:48.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.198 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:25:48.208 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.208 -07 000000448 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:25:48.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36674
17-03-17 20:25:48.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36678
17-03-17 20:25:48.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:48.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:25:48.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.248 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:48.248 -07 000000627 INF: FPGA: Recv ZPIEZORD 33046
17-03-17 20:25:48.258 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.1 V.
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36679 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36672 (-175.0 uncal um), Max = 36688 (-175.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36679, posNoise = 9, negNoise = 7
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: After move to -0.175953, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: Settle wait time = 2412 ms, measure time = 107 ms (allowed 150 ms), total time = 2519 ms
17-03-17 20:25:48.258 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:48.308 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3298 ms
17-03-17 20:25:48.308 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:48.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:48.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:48.308 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:48.308 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:25:48.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:48.308 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:48.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:25:48.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:25:48.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:48.318 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:25:48.328 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:25:48.328 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:25:48.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:25:48.378 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:25:48.568 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:25:48.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:25:48.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:25:48.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:25:48.608 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:25:48.608 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:25:48.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:25:48.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:25:48.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:48.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:25:48.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:25:48.718 -07 000000012 INF: Autofocus start
17-03-17 20:25:48.718 -07 000000012 INF: MeasureProfile start
17-03-17 20:25:48.718 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:25:48.718 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:25:48.728 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:48.728 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:25:48.728 -07 000000012 INF: MeasureProfile done
17-03-17 20:25:48.728 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:25:48.728 -07 000000012 INF: Autofocus finished
17-03-17 20:25:48.928 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:25:48.928 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:25:48.928 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175957029158785. ----------
17-03-17 20:25:48.928 -07 000000610 INF: Cycle	38	Tile	11	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:48.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36934, sync = True, waitForSettling = True)
17-03-17 20:25:48.938 -07 000000610 INF: Z Motor: Moving to -0.169073 mm, started at -0.175957 mm, distance = 6.88 um
17-03-17 20:25:48.938 -07 000000610 INF: FPGA: Xmit ZDACW 36934\n [Z Motor]
17-03-17 20:25:48.938 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:25:48.948 -07 000000610 INF: FPGA: 'ZDACW 36934' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:48.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:48.948 -07 000000551 INF: FPGA: Recv ZDACR 36934
17-03-17 20:25:48.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:48.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:49.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.108 -07 000000012 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:25:49.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:49.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.118 -07 000000618 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:25:49.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.128 -07 000000448 INF: FPGA: Recv ZSGSRD 35606
17-03-17 20:25:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:25:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.148 -07 000000501 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:25:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.158 -07 000000551 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:25:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35606
17-03-17 20:25:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:25:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:25:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:49.198 -07 000000501 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:25:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:49.208 -07 000000429 INF: FPGA: Recv ZPIEZORD 31619
17-03-17 20:25:49.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:49.218 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.8 V.
17-03-17 20:25:49.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35608 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35608 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35615 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:25:49.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35608, posNoise = 7, negNoise = 4
17-03-17 20:25:49.218 -07 000000610 INF: Z Motor: After move to -0.169073, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:49.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:25:49.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:49.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:49.218 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:49.218 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:49.218 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:49.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:49.218 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:49.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:49.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:49.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:49.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:49.218 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:49.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:49.228 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:49.228 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:49.228 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:49.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:25:49.238 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:25:49.238 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:25:49.238 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:25:49.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37111 150\n [Camera]
17-03-17 20:25:49.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:49.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:49.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:49.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:49.858 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:49.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:25:49.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:49.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:49.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:49.858 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:49.858 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:25:50.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37111 799
17-03-17 20:25:50.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:25:50.258 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:25:50.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:50.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:25:50.258 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:25:50.258 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:50.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:50.258 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:25:50.268 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:25:50.268 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:25:50.278 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:50.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:50.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:50.398 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:50.398 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:50.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:25:50.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:25:50.778 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:25:50.778 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:50.778 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:25:50.778 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:25:50.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:50.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:50.788 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:50.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37111 150' command took 2 ms to send, 1538 ms to get response, and 1551 ms overall
17-03-17 20:25:50.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:50.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:50.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:50.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 20:25:50.888 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169623
17-03-17 20:25:50.888 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16962 mm
17-03-17 20:25:50.888 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:51.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:25:51.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:25:51.178 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:51.178 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:51.188 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:25:51.198 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:25:51.198 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:25:51.198 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:51.738 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37054, sync = True, waitForSettling = False)
17-03-17 20:25:51.738 -07 000000547 INF: Z Motor: Moving to -0.169622 mm, started at -0.169077 mm, distance = -0.55 um
17-03-17 20:25:51.738 -07 000000547 INF: FPGA: Xmit ZDACW 37054\n [Z Motor]
17-03-17 20:25:52.738 -07 000000502 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:25:52.738 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:25:52.738 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:52.738 -07 000000547 INF: FPGA: 'ZDACW 37054' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-17 20:25:52.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1530 ms to get response, and 1538 ms overall
17-03-17 20:25:52.738 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:52.738 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:52.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:52.738 -07 000000502 INF: FPGA: Recv ZDACR 37054
17-03-17 20:25:52.738 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:52.738 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:25:52.748 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:52.748 -07 000000547 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 20:25:52.748 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:53.048 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.999021,
17-03-17 20:25:53.118 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:25:53.118 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:25:53.158 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:53.158 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:25:53.168 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:25:53.168 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:53.168 -07 000000478 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:25:53.168 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec
17-03-17 20:25:54.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:54.118 -07 000000608 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:25:54.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.128 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:54.148 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:54.148 -07 000000478 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:54.148 -07 000000478 INF: Y Motor: Moved to 69.0273 after 2949 ms (table move)
17-03-17 20:25:54.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169622 mm (DAC = 37054)
17-03-17 20:25:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.148 -07 000000608 INF: FPGA: Recv ZSGSRD 35696
17-03-17 20:25:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.158 -07 000000478 INF: FPGA: Recv ZSGSRD 35690
17-03-17 20:25:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35696
17-03-17 20:25:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35690
17-03-17 20:25:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.188 -07 000000608 INF: FPGA: Recv ZSGSRD 35699
17-03-17 20:25:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.198 -07 000000448 INF: FPGA: Recv ZSGSRD 35694
17-03-17 20:25:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35689
17-03-17 20:25:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.218 -07 000000608 INF: FPGA: Recv ZSGSRD 35692
17-03-17 20:25:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35695
17-03-17 20:25:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35697
17-03-17 20:25:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:54.248 -07 000000502 INF: FPGA: Recv ZPIEZORD 31712
17-03-17 20:25:54.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -8.8 V.
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35694 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35699 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35694, posNoise = 5, negNoise = 5
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: After move to -0.169622, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: Settle wait time = 2412 ms, measure time = 105 ms (allowed 150 ms), total time = 2517 ms
17-03-17 20:25:54.258 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:54.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3417 ms
17-03-17 20:25:54.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:54.308 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.169629180199151. ----------
17-03-17 20:25:54.308 -07 000000610 INF: Cycle	38	Tile	12	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:54.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36877, sync = True, waitForSettling = True)
17-03-17 20:25:54.308 -07 000000610 INF: Z Motor: Moving to -0.168812 mm, started at -0.169629 mm, distance = 0.82 um
17-03-17 20:25:54.308 -07 000000610 INF: FPGA: Xmit ZDACW 36877\n [Z Motor]
17-03-17 20:25:54.308 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:25:54.318 -07 000000610 INF: FPGA: 'ZDACW 36877' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:54.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:54.318 -07 000000429 INF: FPGA: Recv ZDACR 36877
17-03-17 20:25:54.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.478 -07 000000618 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:25:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35573
17-03-17 20:25:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.498 -07 000000502 INF: FPGA: Recv ZSGSRD 35569
17-03-17 20:25:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35573
17-03-17 20:25:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.518 -07 000000429 INF: FPGA: Recv ZSGSRD 35566
17-03-17 20:25:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35564
17-03-17 20:25:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35571
17-03-17 20:25:54.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.548 -07 000000618 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:25:54.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.558 -07 000000429 INF: FPGA: Recv ZSGSRD 35564
17-03-17 20:25:54.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:54.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:25:54.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:54.578 -07 000000608 INF: FPGA: Recv ZPIEZORD 31537
17-03-17 20:25:54.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:54.588 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -8.9 V.
17-03-17 20:25:54.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35567 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35564 (-167.9 uncal um), Max = 35573 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:25:54.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 5, negNoise = 4
17-03-17 20:25:54.588 -07 000000610 INF: Z Motor: After move to -0.168812, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:54.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:25:54.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:54.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:54.588 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:54.588 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:54.588 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:54.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:54.588 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:54.588 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:54.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:54.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:54.588 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:54.588 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:54.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:25:54.588 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:54.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:54.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:54.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:25:54.608 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:25:54.608 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:25:54.608 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:25:54.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37054 150\n [Camera]
17-03-17 20:25:54.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:55.228 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:55.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:55.228 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:55.228 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:55.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 20:25:55.228 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:55.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:55.228 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:55.228 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:55.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:25:55.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37054 799
17-03-17 20:25:55.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:55.618 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:25:55.618 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:25:55.618 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:55.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:25:55.618 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:25:55.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:55.618 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:55.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:25:55.618 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:25:55.628 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:25:55.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:55.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:55.768 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:55.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:25:55.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:25:55.888 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:55.888 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:55.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:25:55.898 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:55.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:25:55.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:25:55.958 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:25:55.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37054 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:25:55.958 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169188
17-03-17 20:25:55.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16919 mm
17-03-17 20:25:55.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:25:55.968 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:25:55.968 -07 000000478 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:25:55.968 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 36959, sync = True, waitForSettling = False)
17-03-17 20:25:55.968 -07 000000551 INF: Z Motor: Moving to -0.169187 mm, started at -0.168820 mm, distance = -0.37 um
17-03-17 20:25:55.968 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:55.968 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:25:55.978 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:55.978 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:55.978 -07 000000478 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:25:55.978 -07 000000478 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:25:55.978 -07 000000551 INF: FPGA: Xmit ZDACW 36959\n [Z Motor]
17-03-17 20:25:55.988 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:25:56.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:25:56.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:25:56.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:56.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:25:56.298 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:25:56.298 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:56.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:56.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 20:25:56.298 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:56.308 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:25:57.238 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:25:57.238 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:25:57.238 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:25:57.238 -07 000000551 INF: FPGA: 'ZDACW 36959' command took 1 ms to send, 1251 ms to get response, and 1270 ms overall
17-03-17 20:25:57.238 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1241 ms to get response, and 1260 ms overall
17-03-17 20:25:57.238 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:57.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:25:57.238 -07 000000502 INF: FPGA: Recv ZDACR 36959
17-03-17 20:25:57.248 -07 000000551 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:57.248 -07 000000551 INF: Z Motor: MoveAbsStepped took 1278 ms (did NOT wait for settling yet))
17-03-17 20:25:57.278 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:57.278 -07 000000382 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:25:57.288 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:25:57.288 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:57.288 -07 000000478 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:25:57.288 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1263 ms, distance = 0.845 mm, average velocity = 0.669 mm/sec
17-03-17 20:25:58.238 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:25:58.238 -07 000000012 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:25:58.248 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.248 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:25:58.268 -07 000000478 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:25:58.268 -07 000000478 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:25:58.268 -07 000000478 INF: Y Motor: Moved to 69.8638 after 2302 ms (table move)
17-03-17 20:25:58.268 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169187 mm (DAC = 36959)
17-03-17 20:25:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35629
17-03-17 20:25:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:25:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35616
17-03-17 20:25:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.288 -07 000000382 INF: FPGA: Recv ZSGSRD 35624
17-03-17 20:25:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35624
17-03-17 20:25:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35634
17-03-17 20:25:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.318 -07 000000415 INF: FPGA: Recv ZSGSRD 35631
17-03-17 20:25:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35628
17-03-17 20:25:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35628
17-03-17 20:25:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.348 -07 000000502 INF: FPGA: Recv ZSGSRD 35628
17-03-17 20:25:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.358 -07 000000012 INF: FPGA: Recv ZSGSRD 35627
17-03-17 20:25:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:58.368 -07 000000382 INF: FPGA: Recv ZPIEZORD 31648
17-03-17 20:25:58.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.8 V.
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35627 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35628 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35616 (-168.3 uncal um), Max = 35634 (-168.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35627, posNoise = 7, negNoise = 11
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: After move to -0.169187, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: Settle wait time = 2304 ms, measure time = 105 ms (allowed 150 ms), total time = 2409 ms
17-03-17 20:25:58.378 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:25:58.408 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.99219,
17-03-17 20:25:58.428 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2461 ms
17-03-17 20:25:58.428 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:25:58.428 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.169198757985653. ----------
17-03-17 20:25:58.428 -07 000000610 INF: Cycle	38	Tile	13	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:25:58.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36782, sync = True, waitForSettling = True)
17-03-17 20:25:58.428 -07 000000610 INF: Z Motor: Moving to -0.168377 mm, started at -0.169199 mm, distance = 0.82 um
17-03-17 20:25:58.448 -07 000000610 INF: FPGA: Xmit ZDACW 36782\n [Z Motor]
17-03-17 20:25:58.448 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:25:58.458 -07 000000610 INF: FPGA: 'ZDACW 36782' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:25:58.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:25:58.458 -07 000000478 INF: FPGA: Recv ZDACR 36782
17-03-17 20:25:58.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:25:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.618 -07 000000551 INF: FPGA: Recv ZSGSRD 35496
17-03-17 20:25:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:25:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.628 -07 000000415 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:25:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35504
17-03-17 20:25:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.648 -07 000000012 INF: FPGA: Recv ZSGSRD 35498
17-03-17 20:25:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35497
17-03-17 20:25:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.668 -07 000000502 INF: FPGA: Recv ZSGSRD 35501
17-03-17 20:25:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35500
17-03-17 20:25:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35501
17-03-17 20:25:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35495
17-03-17 20:25:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:25:58.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35503
17-03-17 20:25:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:25:58.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:25:58.728 -07 000000501 INF: FPGA: Recv ZPIEZORD 31507
17-03-17 20:25:58.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:25:58.738 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -8.8 V.
17-03-17 20:25:58.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35500 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35500 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35495 (-167.5 uncal um), Max = 35504 (-167.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:25:58.738 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35500, posNoise = 4, negNoise = 5
17-03-17 20:25:58.738 -07 000000610 INF: Z Motor: After move to -0.168377, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:25:58.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-17 20:25:58.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:25:58.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:25:58.738 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:25:58.738 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:25:58.738 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:25:58.738 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:25:58.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:25:58.738 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:25:58.738 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:25:58.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:25:58.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:25:58.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:25:58.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:25:58.738 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:25:58.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:25:58.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:25:58.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:25:58.748 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:25:58.748 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:25:58.748 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:25:58.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36959 150\n [Camera]
17-03-17 20:25:58.978 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:25:59.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:25:59.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:25:59.388 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:25:59.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:25:59.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:25:59.388 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:25:59.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:25:59.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:25:59.398 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:25:59.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:25:59.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36959 800
17-03-17 20:25:59.728 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:25:59.788 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:25:59.788 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:25:59.788 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:59.798 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:59.798 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:25:59.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:25:59.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:25:59.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:25:59.798 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:25:59.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:25:59.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:25:59.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:25:59.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:00.038 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:00.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:00.038 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:00.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:00.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:26:00.038 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:00.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:26:00.118 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:00.118 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:00.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36959 150' command took 2 ms to send, 1339 ms to get response, and 1367 ms overall
17-03-17 20:26:00.128 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168752
17-03-17 20:26:00.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16875 mm
17-03-17 20:26:00.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:00.128 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:26:00.128 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:26:00.128 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36864, sync = True, waitForSettling = False)
17-03-17 20:26:00.128 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:00.128 -07 000000382 INF: Z Motor: Moving to -0.168753 mm, started at -0.168383 mm, distance = -0.37 um
17-03-17 20:26:00.128 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:26:00.138 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:00.138 -07 000000502 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:00.138 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:00.138 -07 000000502 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:26:00.138 -07 000000382 INF: FPGA: Xmit ZDACW 36864\n [Z Motor]
17-03-17 20:26:00.138 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:26:00.148 -07 000000382 INF: FPGA: 'ZDACW 36864' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:26:00.148 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:00.148 -07 000000448 INF: FPGA: Recv ZDACR 36864
17-03-17 20:26:00.158 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:00.158 -07 000000382 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 20:26:00.158 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:00.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:26:00.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:26:00.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:00.448 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:26:00.448 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:26:00.448 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:00.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:00.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:26:00.448 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:00.458 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:26:00.528 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:26:00.528 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 20:26:00.568 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:00.568 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:26:00.578 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:00.578 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:00.578 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:26:00.578 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 20:26:01.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:01.528 -07 000000415 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:26:01.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:01.538 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:01.558 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:01.558 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:01.558 -07 000000502 INF: Y Motor: Moved to 70.6890 after 1429 ms (table move)
17-03-17 20:26:01.558 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168753 mm (DAC = 36864)
17-03-17 20:26:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35558
17-03-17 20:26:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35560
17-03-17 20:26:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35561
17-03-17 20:26:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.588 -07 000000608 INF: FPGA: Recv ZSGSRD 35561
17-03-17 20:26:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.598 -07 000000448 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:26:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.608 -07 000000448 INF: FPGA: Recv ZSGSRD 35558
17-03-17 20:26:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.618 -07 000000501 INF: FPGA: Recv ZSGSRD 35558
17-03-17 20:26:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.628 -07 000000448 INF: FPGA: Recv ZSGSRD 35555
17-03-17 20:26:01.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35558
17-03-17 20:26:01.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.648 -07 000000448 INF: FPGA: Recv ZSGSRD 35560
17-03-17 20:26:01.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:01.658 -07 000000448 INF: FPGA: Recv ZPIEZORD 31559
17-03-17 20:26:01.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.625 V. Piezo Error = -8.8 V.
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35559 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35558 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35555 (-167.9 uncal um), Max = 35561 (-167.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35559, posNoise = 2, negNoise = 4
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: After move to -0.168753, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:26:01.668 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:01.718 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 20:26:01.718 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:01.718 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168761911560013. ----------
17-03-17 20:26:01.718 -07 000000610 INF: Cycle	38	Tile	14	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:01.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36687, sync = True, waitForSettling = True)
17-03-17 20:26:01.718 -07 000000610 INF: Z Motor: Moving to -0.167942 mm, started at -0.168762 mm, distance = 0.82 um
17-03-17 20:26:01.718 -07 000000610 INF: FPGA: Xmit ZDACW 36687\n [Z Motor]
17-03-17 20:26:01.718 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:01.728 -07 000000610 INF: FPGA: 'ZDACW 36687' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:01.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:01.728 -07 000000382 INF: FPGA: Recv ZDACR 36687
17-03-17 20:26:01.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:01.778 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35432
17-03-17 20:26:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.898 -07 000000415 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:26:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35435
17-03-17 20:26:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.918 -07 000000415 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:26:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.928 -07 000000415 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:26:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35432
17-03-17 20:26:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.948 -07 000000382 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:26:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.958 -07 000000382 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:26:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.968 -07 000000382 INF: FPGA: Recv ZSGSRD 35431
17-03-17 20:26:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:01.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:26:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:01.988 -07 000000382 INF: FPGA: Recv ZPIEZORD 31383
17-03-17 20:26:01.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:01.998 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -8.9 V.
17-03-17 20:26:01.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35434 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35431 (-167.1 uncal um), Max = 35438 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:26:01.998 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 4, negNoise = 3
17-03-17 20:26:01.998 -07 000000610 INF: Z Motor: After move to -0.167942, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:01.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:26:01.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:01.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:01.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:01.998 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:01.998 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:01.998 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:01.998 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:01.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:01.998 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:01.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:01.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:01.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:02.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:02.008 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:02.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:02.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:02.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:26:02.018 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:26:02.018 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:26:02.018 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:02.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36864 150\n [Camera]
17-03-17 20:26:02.218 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:02.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:02.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:02.638 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:02.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:02.638 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:02.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:02.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:02.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:26:02.638 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:02.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:02.828 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36864 799
17-03-17 20:26:02.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:26:03.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:26:03.008 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:26:03.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:03.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:03.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:26:03.008 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:26:03.008 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:03.018 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:03.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:26:03.018 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:26:03.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:26:03.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:26:03.178 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:03.178 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:03.178 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:26:03.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:26:03.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:26:03.178 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:03.178 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:03.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:26:03.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:03.368 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:03.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36864 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:26:03.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:26:03.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167958885042293. ------
17-03-17 20:26:03.368 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:03.368 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17456 mm
17-03-17 20:26:03.368 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:03.578 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:26:03.578 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:26:03.578 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:03.578 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:26:03.578 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:26:03.578 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:03.578 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:03.578 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:26:03.578 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:03.588 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:26:03.598 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:03.598 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 226 ms overall
17-03-17 20:26:03.598 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:26:03.598 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:26:03.598 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:26:03.598 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38134, sync = True, waitForSettling = False)
17-03-17 20:26:03.598 -07 000000608 INF: Z Motor: Moving to -0.174566 mm, started at -0.167959 mm, distance = -6.61 um
17-03-17 20:26:03.608 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:03.618 -07 000000608 INF: FPGA: Xmit ZDACW 38134\n [Z Motor]
17-03-17 20:26:04.458 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:26:04.458 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:26:04.458 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:26:04.458 -07 000000608 INF: FPGA: 'ZDACW 38134' command took 0 ms to send, 831 ms to get response, and 854 ms overall
17-03-17 20:26:04.458 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 840 ms to get response, and 857 ms overall
17-03-17 20:26:04.458 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 851 ms to get response, and 857 ms overall
17-03-17 20:26:04.458 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:04.458 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.028963,
17-03-17 20:26:04.458 -07 000000627 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:04.458 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:04.458 -07 000000627 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:26:04.458 -07 000000618 INF: FPGA: Recv ZDACR 38134
17-03-17 20:26:04.468 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:04.468 -07 000000608 INF: Z Motor: MoveAbsStepped took 863 ms (did NOT wait for settling yet))
17-03-17 20:26:04.468 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:04.838 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:26:04.838 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:26:04.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:04.888 -07 000000431 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:26:04.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:04.888 -07 000000627 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:04.888 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:26:04.888 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 20:26:05.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:05.838 -07 000000608 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:26:05.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.848 -07 000000627 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:05.868 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:05.868 -07 000000627 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:05.868 -07 000000627 INF: Y Motor: Moved to 71.5190 after 2268 ms (table move)
17-03-17 20:26:05.868 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174566 mm (DAC = 38134)
17-03-17 20:26:05.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.878 -07 000000012 INF: FPGA: Recv ZSGSRD 36467
17-03-17 20:26:05.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:05.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.878 -07 000000551 INF: FPGA: Recv ZSGSRD 36458
17-03-17 20:26:05.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36458
17-03-17 20:26:05.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36470
17-03-17 20:26:05.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36467
17-03-17 20:26:05.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.918 -07 000000627 INF: FPGA: Recv ZSGSRD 36464
17-03-17 20:26:05.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.928 -07 000000431 INF: FPGA: Recv ZSGSRD 36470
17-03-17 20:26:05.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36462
17-03-17 20:26:05.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36455
17-03-17 20:26:05.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:05.958 -07 000000627 INF: FPGA: Recv ZSGSRD 36459
17-03-17 20:26:05.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.968 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:05.968 -07 000000608 INF: FPGA: Recv ZPIEZORD 32733
17-03-17 20:26:05.978 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.3 V.
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36463 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36463 (-173.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36455 (-173.6 uncal um), Max = 36470 (-173.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36463, posNoise = 7, negNoise = 8
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: After move to -0.174566, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: Settle wait time = 2269 ms, measure time = 104 ms (allowed 150 ms), total time = 2373 ms
17-03-17 20:26:05.978 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:06.028 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2653 ms
17-03-17 20:26:06.028 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:06.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:06.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:06.028 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:06.028 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:06.028 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:26:06.028 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:06.028 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:06.028 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:26:06.038 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:06.038 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:26:06.048 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:26:06.048 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:26:06.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:26:06.098 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:26:06.298 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:26:06.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:26:06.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:26:06.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:26:06.338 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:26:06.338 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:26:06.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:26:06.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:26:06.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:06.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:26:06.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:26:06.438 -07 000000608 INF: Autofocus start
17-03-17 20:26:06.438 -07 000000608 INF: MeasureProfile start
17-03-17 20:26:06.438 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:06.438 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:06.448 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:06.448 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:26:06.448 -07 000000608 INF: MeasureProfile done
17-03-17 20:26:06.448 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:26:06.448 -07 000000608 INF: Autofocus finished
17-03-17 20:26:06.648 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:26:06.648 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:26:06.648 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174569399336165. ----------
17-03-17 20:26:06.648 -07 000000610 INF: Cycle	38	Tile	15	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:06.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36631, sync = True, waitForSettling = True)
17-03-17 20:26:06.658 -07 000000610 INF: Z Motor: Moving to -0.167686 mm, started at -0.174569 mm, distance = 6.88 um
17-03-17 20:26:06.658 -07 000000610 INF: FPGA: Xmit ZDACW 36631\n [Z Motor]
17-03-17 20:26:06.658 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:26:06.668 -07 000000610 INF: FPGA: 'ZDACW 36631' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:06.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:06.668 -07 000000551 INF: FPGA: Recv ZDACR 36631
17-03-17 20:26:06.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:06.788 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:06.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35395
17-03-17 20:26:06.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:06.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:06.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:06.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:26:06.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35393
17-03-17 20:26:06.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.878 -07 000000502 INF: FPGA: Recv ZSGSRD 35395
17-03-17 20:26:06.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.888 -07 000000382 INF: FPGA: Recv ZSGSRD 35394
17-03-17 20:26:06.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.898 -07 000000627 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:06.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.908 -07 000000382 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:06.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:06.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35399
17-03-17 20:26:06.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:06.928 -07 000000382 INF: FPGA: Recv ZPIEZORD 31306
17-03-17 20:26:06.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:06.938 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.0 V.
17-03-17 20:26:06.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35393 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35389 (-166.8 uncal um), Max = 35399 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:06.938 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35393, posNoise = 6, negNoise = 4
17-03-17 20:26:06.938 -07 000000610 INF: Z Motor: After move to -0.167686, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:06.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:26:06.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:06.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:06.938 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:06.938 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:06.938 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:06.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:06.938 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:06.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:06.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:26:06.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:06.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:06.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:06.948 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:06.948 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:06.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:06.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:06.958 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:26:06.958 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:06.958 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:26:06.958 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:26:06.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36807 150\n [Camera]
17-03-17 20:26:07.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:07.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:07.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:07.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:07.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:07.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:26:07.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:07.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:07.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:07.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:07.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:07.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36807 799
17-03-17 20:26:07.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:07.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:26:07.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:26:07.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:07.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:07.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:26:08.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:26:08.078 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:26:08.078 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:08.078 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:26:08.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 20:26:08.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:08.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:08.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:08.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:08.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:08.118 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:08.118 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:08.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:26:08.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:08.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:08.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:08.308 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:08.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36807 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:26:08.308 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167708
17-03-17 20:26:08.308 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16771 mm
17-03-17 20:26:08.308 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:08.308 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:26:08.308 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:26:08.308 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:08.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:26:08.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:26:08.508 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:08.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:26:08.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:26:08.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:08.518 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:08.518 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:26:08.518 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:08.528 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:26:08.538 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36636, sync = True, waitForSettling = False)
17-03-17 20:26:08.538 -07 000000382 INF: Z Motor: Moving to -0.167709 mm, started at -0.167695 mm, distance = -0.01 um
17-03-17 20:26:08.538 -07 000000382 INF: FPGA: Xmit ZDACW 36636\n [Z Motor]
17-03-17 20:26:09.238 -07 000000501 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:26:09.238 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:09.238 -07 000000382 INF: FPGA: 'ZDACW 36636' command took 0 ms to send, 690 ms to get response, and 696 ms overall
17-03-17 20:26:09.238 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:09.238 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 920 ms to get response, and 924 ms overall
17-03-17 20:26:09.238 -07 000000618 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:09.238 -07 000000501 INF: FPGA: Recv ZDACR 36636
17-03-17 20:26:09.238 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:09.238 -07 000000618 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:26:09.248 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:09.248 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:09.248 -07 000000382 INF: Z Motor: MoveAbsStepped took 705 ms (did NOT wait for settling yet))
17-03-17 20:26:09.618 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:26:09.618 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:26:09.658 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:09.658 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:26:09.668 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:09.668 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:09.668 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:26:09.668 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 20:26:09.838 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.02213,
17-03-17 20:26:10.618 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:10.618 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:26:10.628 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:10.628 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:10.648 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:10.648 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:10.648 -07 000000618 INF: Y Motor: Moved to 72.3496 after 2337 ms (table move)
17-03-17 20:26:10.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167709 mm (DAC = 36636)
17-03-17 20:26:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35393
17-03-17 20:26:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:10.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35390
17-03-17 20:26:10.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.668 -07 000000551 INF: FPGA: Recv ZSGSRD 35401
17-03-17 20:26:10.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35400
17-03-17 20:26:10.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35399
17-03-17 20:26:10.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35396
17-03-17 20:26:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35398
17-03-17 20:26:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.718 -07 000000547 INF: FPGA: Recv ZSGSRD 35397
17-03-17 20:26:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.728 -07 000000551 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:10.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.738 -07 000000547 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:26:10.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:10.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 31372
17-03-17 20:26:10.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -8.9 V.
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35396 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35396 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35390 (-166.8 uncal um), Max = 35401 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35396, posNoise = 5, negNoise = 6
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: After move to -0.167709, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: Settle wait time = 2112 ms, measure time = 104 ms (allowed 150 ms), total time = 2216 ms
17-03-17 20:26:10.758 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:10.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2495 ms
17-03-17 20:26:10.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:10.808 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.167714764980906. ----------
17-03-17 20:26:10.808 -07 000000610 INF: Cycle	38	Tile	16	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:10.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36459, sync = True, waitForSettling = True)
17-03-17 20:26:10.808 -07 000000610 INF: Z Motor: Moving to -0.166899 mm, started at -0.167715 mm, distance = 0.82 um
17-03-17 20:26:10.808 -07 000000610 INF: FPGA: Xmit ZDACW 36459\n [Z Motor]
17-03-17 20:26:10.808 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:26:10.818 -07 000000610 INF: FPGA: 'ZDACW 36459' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:10.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:10.818 -07 000000547 INF: FPGA: Recv ZDACR 36459
17-03-17 20:26:10.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:10.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:26:10.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:10.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.988 -07 000000448 INF: FPGA: Recv ZSGSRD 35275
17-03-17 20:26:10.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:10.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:10.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:26:11.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.008 -07 000000448 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:26:11.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.018 -07 000000415 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:26:11.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35270
17-03-17 20:26:11.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.038 -07 000000448 INF: FPGA: Recv ZSGSRD 35275
17-03-17 20:26:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:26:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35268
17-03-17 20:26:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:11.068 -07 000000547 INF: FPGA: Recv ZSGSRD 35272
17-03-17 20:26:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:11.078 -07 000000618 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 20:26:11.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:11.088 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.0 V.
17-03-17 20:26:11.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35273 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35268 (-166.0 uncal um), Max = 35277 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:11.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 5, negNoise = 4
17-03-17 20:26:11.088 -07 000000610 INF: Z Motor: After move to -0.166899, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:11.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:26:11.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:11.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:11.088 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:11.088 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:11.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:11.088 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:11.088 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:11.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:26:11.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:11.088 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:11.088 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:11.088 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:11.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:11.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:11.098 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:11.098 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:11.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:26:11.098 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:11.108 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:26:11.108 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:11.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36636 150\n [Camera]
17-03-17 20:26:11.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:11.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:11.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:11.718 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:11.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:11.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:26:11.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:11.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:11.728 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:11.728 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:11.728 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:26:11.788 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:11.918 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36636 799
17-03-17 20:26:12.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:26:12.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:26:12.128 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:12.128 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:26:12.128 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:26:12.128 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:12.128 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:12.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:26:12.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 20:26:12.248 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 20:26:12.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:12.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:12.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:12.268 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:12.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:12.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:12.268 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:12.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:12.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:26:12.268 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:12.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:26:12.668 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:26:12.668 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:26:12.668 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:12.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:26:12.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:26:12.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:12.678 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:12.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:12.678 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:26:12.678 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:26:12.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:12.688 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:12.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36636 150' command took 2 ms to send, 1572 ms to get response, and 1577 ms overall
17-03-17 20:26:12.688 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167369
17-03-17 20:26:12.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16737 mm
17-03-17 20:26:12.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:12.688 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:26:12.688 -07 000000415 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:26:12.688 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:12.688 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36562, sync = True, waitForSettling = False)
17-03-17 20:26:12.688 -07 000000382 INF: Z Motor: Moving to -0.167370 mm, started at -0.166918 mm, distance = -0.45 um
17-03-17 20:26:12.698 -07 000000382 INF: FPGA: Xmit ZDACW 36562\n [Z Motor]
17-03-17 20:26:13.238 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:26:13.238 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:26:13.238 -07 000000382 INF: FPGA: 'ZDACW 36562' command took 0 ms to send, 530 ms to get response, and 541 ms overall
17-03-17 20:26:13.238 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:13.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 540 ms to get response, and 543 ms overall
17-03-17 20:26:13.238 -07 000000415 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:13.238 -07 000000415 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:13.238 -07 000000415 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:26:13.238 -07 000000012 INF: FPGA: Recv ZDACR 36562
17-03-17 20:26:13.248 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:13.248 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:13.248 -07 000000382 INF: Z Motor: MoveAbsStepped took 551 ms (did NOT wait for settling yet))
17-03-17 20:26:13.618 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:26:13.618 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:26:13.658 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:13.658 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:26:13.668 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:26:13.668 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:13.668 -07 000000415 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:26:13.668 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 20:26:14.618 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:14.618 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:26:14.628 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:14.628 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:14.648 -07 000000415 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:14.648 -07 000000415 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:14.648 -07 000000415 INF: Y Motor: Moved to 73.1763 after 1954 ms (table move)
17-03-17 20:26:14.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167370 mm (DAC = 36562)
17-03-17 20:26:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.648 -07 000000012 INF: FPGA: Recv ZSGSRD 35335
17-03-17 20:26:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.658 -07 000000012 INF: FPGA: Recv ZSGSRD 35337
17-03-17 20:26:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.668 -07 000000012 INF: FPGA: Recv ZSGSRD 35344
17-03-17 20:26:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.678 -07 000000012 INF: FPGA: Recv ZSGSRD 35345
17-03-17 20:26:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.688 -07 000000012 INF: FPGA: Recv ZSGSRD 35344
17-03-17 20:26:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.698 -07 000000012 INF: FPGA: Recv ZSGSRD 35350
17-03-17 20:26:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.708 -07 000000415 INF: FPGA: Recv ZSGSRD 35341
17-03-17 20:26:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.718 -07 000000012 INF: FPGA: Recv ZSGSRD 35340
17-03-17 20:26:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35337
17-03-17 20:26:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.738 -07 000000429 INF: FPGA: Recv ZSGSRD 35339
17-03-17 20:26:14.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:14.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 31325
17-03-17 20:26:14.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -8.9 V.
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35341 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35340 (-166.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35335 (-166.5 uncal um), Max = 35350 (-166.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35341, posNoise = 9, negNoise = 6
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: After move to -0.167370, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: Settle wait time = 1955 ms, measure time = 106 ms (allowed 150 ms), total time = 2061 ms
17-03-17 20:26:14.758 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:14.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2115 ms
17-03-17 20:26:14.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:14.808 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167361433313109. ----------
17-03-17 20:26:14.808 -07 000000610 INF: Cycle	38	Tile	17	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:14.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 20:26:14.808 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.167361 mm, distance = 0.80 um
17-03-17 20:26:14.808 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 20:26:14.808 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:26:14.818 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:14.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:14.818 -07 000000415 INF: FPGA: Recv ZDACR 36385
17-03-17 20:26:14.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:14.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35214
17-03-17 20:26:14.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:14.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35216
17-03-17 20:26:14.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:14.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:14.998 -07 000000608 INF: FPGA: Recv ZSGSRD 35211
17-03-17 20:26:15.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.008 -07 000000012 INF: FPGA: Recv ZSGSRD 35220
17-03-17 20:26:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.018 -07 000000608 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:26:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.028 -07 000000012 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:26:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:26:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35213
17-03-17 20:26:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.058 -07 000000429 INF: FPGA: Recv ZSGSRD 35216
17-03-17 20:26:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:15.068 -07 000000608 INF: FPGA: Recv ZSGSRD 35215
17-03-17 20:26:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:15.078 -07 000000415 INF: FPGA: Recv ZPIEZORD 31131
17-03-17 20:26:15.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:15.088 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.0 V.
17-03-17 20:26:15.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35216 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35216 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35211 (-165.7 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:26:15.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35216, posNoise = 5, negNoise = 5
17-03-17 20:26:15.088 -07 000000610 INF: Z Motor: After move to -0.166560, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:15.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:26:15.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:15.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:15.088 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:15.088 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:15.088 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:15.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:15.088 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:15.088 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:15.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:15.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:15.088 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:15.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:15.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:15.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:15.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:15.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:15.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:26:15.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:26:15.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:26:15.098 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:15.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36562 150\n [Camera]
17-03-17 20:26:15.198 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.019446,
17-03-17 20:26:15.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:15.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:15.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:15.718 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:15.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:15.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:15.728 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:15.728 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:15.728 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:26:15.738 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:15.738 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:26:15.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36562 799
17-03-17 20:26:16.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:16.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 20:26:16.108 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 20:26:16.108 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:16.108 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:16.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:26:16.108 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:26:16.108 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:16.118 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:26:16.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:16.118 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:26:16.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:16.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:16.268 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:16.268 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:16.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:26:16.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:16.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:16.268 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:16.268 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:16.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:26:16.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:26:16.668 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:26:16.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:16.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:26:16.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:26:16.668 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:16.668 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:16.668 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:26:16.678 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:16.678 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:26:16.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:16.678 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:16.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36562 150' command took 2 ms to send, 1569 ms to get response, and 1574 ms overall
17-03-17 20:26:16.688 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166948
17-03-17 20:26:16.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16695 mm
17-03-17 20:26:16.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:16.688 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:26:16.688 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:26:16.688 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:16.688 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36470, sync = True, waitForSettling = False)
17-03-17 20:26:16.688 -07 000000608 INF: Z Motor: Moving to -0.166949 mm, started at -0.166558 mm, distance = -0.39 um
17-03-17 20:26:16.698 -07 000000608 INF: FPGA: Xmit ZDACW 36470\n [Z Motor]
17-03-17 20:26:17.238 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:26:17.238 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:17.238 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:17.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 540 ms to get response, and 546 ms overall
17-03-17 20:26:17.238 -07 000000429 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:17.238 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:17.238 -07 000000429 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:26:17.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:17.238 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:17.238 -07 000000608 INF: FPGA: 'ZDACW 36470' command took 0 ms to send, 530 ms to get response, and 542 ms overall
17-03-17 20:26:17.248 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:17.248 -07 000000501 INF: FPGA: Recv ZDACR 36470
17-03-17 20:26:17.258 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:26:17.258 -07 000000608 INF: Z Motor: MoveAbsStepped took 562 ms (did NOT wait for settling yet))
17-03-17 20:26:17.608 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:26:17.618 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 380 ms overall
17-03-17 20:26:17.648 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:17.648 -07 000000608 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:26:17.658 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:17.658 -07 000000429 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:17.658 -07 000000429 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:26:17.658 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.846 mm, average velocity = 2.221 mm/sec
17-03-17 20:26:18.608 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:18.608 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:26:18.618 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:18.618 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:18.638 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:18.638 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:18.638 -07 000000429 INF: Y Motor: Moved to 74.0083 after 1947 ms (table move)
17-03-17 20:26:18.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166949 mm (DAC = 36470)
17-03-17 20:26:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.638 -07 000000429 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:26:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:26:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.658 -07 000000429 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:26:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.668 -07 000000429 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:26:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.678 -07 000000429 INF: FPGA: Recv ZSGSRD 35273
17-03-17 20:26:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35274
17-03-17 20:26:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35279
17-03-17 20:26:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.708 -07 000000429 INF: FPGA: Recv ZSGSRD 35278
17-03-17 20:26:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:26:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:26:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:18.738 -07 000000501 INF: FPGA: Recv ZPIEZORD 31221
17-03-17 20:26:18.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.0 V.
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35277 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35276 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35273 (-166.1 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35277, posNoise = 5, negNoise = 4
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: After move to -0.166949, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: Settle wait time = 1946 ms, measure time = 106 ms (allowed 150 ms), total time = 2052 ms
17-03-17 20:26:18.748 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:18.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2107 ms
17-03-17 20:26:18.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:18.798 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.166950283736036. ----------
17-03-17 20:26:18.798 -07 000000610 INF: Cycle	38	Tile	18	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:18.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36293, sync = True, waitForSettling = True)
17-03-17 20:26:18.798 -07 000000610 INF: Z Motor: Moving to -0.166139 mm, started at -0.166950 mm, distance = 0.81 um
17-03-17 20:26:18.798 -07 000000610 INF: FPGA: Xmit ZDACW 36293\n [Z Motor]
17-03-17 20:26:18.808 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:26:18.808 -07 000000610 INF: FPGA: 'ZDACW 36293' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:26:18.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:18.808 -07 000000448 INF: FPGA: Recv ZDACR 36293
17-03-17 20:26:18.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.968 -07 000000547 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:26:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35153
17-03-17 20:26:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.988 -07 000000429 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:26:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:18.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:26:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.008 -07 000000608 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:26:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.018 -07 000000547 INF: FPGA: Recv ZSGSRD 35149
17-03-17 20:26:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.028 -07 000000429 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:26:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.038 -07 000000501 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:26:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35154
17-03-17 20:26:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:19.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35147
17-03-17 20:26:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:19.068 -07 000000429 INF: FPGA: Recv ZPIEZORD 31058
17-03-17 20:26:19.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:19.078 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.0 V.
17-03-17 20:26:19.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35151 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35150 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35147 (-165.2 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:19.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35151, posNoise = 6, negNoise = 4
17-03-17 20:26:19.078 -07 000000610 INF: Z Motor: After move to -0.166139, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:19.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 20:26:19.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:19.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:19.078 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:19.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:19.078 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:19.078 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:19.078 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:19.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:19.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:19.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:19.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:19.078 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:19.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:19.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:19.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:19.088 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:19.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:26:19.098 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:26:19.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:26:19.098 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:19.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36470 150\n [Camera]
17-03-17 20:26:19.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:19.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:19.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:19.708 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:19.708 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:19.828 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:26:19.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:19.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:19.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:19.838 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:19.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:19.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36470 799
17-03-17 20:26:20.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:20.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:26:20.208 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 20:26:20.208 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:20.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:26:20.208 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:26:20.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:20.208 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:20.208 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 20:26:20.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:20.218 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:26:20.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:20.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:20.258 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:20.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:20.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:20.258 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:20.258 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:20.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:20.268 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:20.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:26:20.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:20.448 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:20.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36470 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:26:20.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:26:20.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166140833006174. ------
17-03-17 20:26:20.448 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17252 mm
17-03-17 20:26:20.448 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:20.448 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:20.458 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:26:20.458 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:26:20.458 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:20.458 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37688, sync = True, waitForSettling = False)
17-03-17 20:26:20.458 -07 000000415 INF: Z Motor: Moving to -0.172525 mm, started at -0.166141 mm, distance = -6.38 um
17-03-17 20:26:20.468 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:20.468 -07 000000415 INF: FPGA: Xmit ZDACW 37688\n [Z Motor]
17-03-17 20:26:20.468 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:26:20.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:20.478 -07 000000415 INF: FPGA: 'ZDACW 37688' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:26:20.478 -07 000000012 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:26:20.488 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:26:20.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:26:20.488 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:20.488 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:20.488 -07 000000547 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:26:20.498 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:20.498 -07 000000012 INF: FPGA: Recv ZDACR 37688
17-03-17 20:26:20.508 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:20.508 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:26:20.508 -07 000000415 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:26:20.578 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.024884,
17-03-17 20:26:20.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:26:20.648 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:26:20.648 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:20.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:26:20.648 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:26:20.648 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:20.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:20.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:26:20.658 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:20.658 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:26:20.688 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:26:20.688 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:26:20.878 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:26:20.878 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:26:20.928 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:20.928 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:26:20.938 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:26:20.938 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:20.938 -07 000000547 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:26:20.938 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 20:26:21.778 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:21.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:21.888 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:21.888 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:26:21.898 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:21.898 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:21.908 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:21.908 -07 000000547 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:21.908 -07 000000547 INF: Y Motor: Moved to 74.8320 after 1453 ms (table move)
17-03-17 20:26:21.908 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172525 mm (DAC = 37688)
17-03-17 20:26:21.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.918 -07 000000547 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:26:21.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:26:21.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.918 -07 000000547 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:26:21.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:21.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36137
17-03-17 20:26:21.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.938 -07 000000547 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:26:21.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36148
17-03-17 20:26:21.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.958 -07 000000547 INF: FPGA: Recv ZSGSRD 36149
17-03-17 20:26:21.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.968 -07 000000547 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:26:21.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.978 -07 000000547 INF: FPGA: Recv ZSGSRD 36151
17-03-17 20:26:21.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.988 -07 000000551 INF: FPGA: Recv ZSGSRD 36146
17-03-17 20:26:21.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:21.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:21.998 -07 000000547 INF: FPGA: Recv ZSGSRD 36147
17-03-17 20:26:22.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.008 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:22.008 -07 000000547 INF: FPGA: Recv ZPIEZORD 32361
17-03-17 20:26:22.018 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.4 V.
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36148 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36149 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36137 (-171.6 uncal um), Max = 36151 (-171.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36148, posNoise = 3, negNoise = 11
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: After move to -0.172525, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: Settle wait time = 1455 ms, measure time = 102 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:26:22.018 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:22.068 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 20:26:22.068 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:22.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:22.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:22.068 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:22.068 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:22.068 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:26:22.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:22.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:22.068 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:26:22.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:22.078 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:26:22.088 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:26:22.088 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:26:22.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:26:22.138 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:26:22.338 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:26:22.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:26:22.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:26:22.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:26:22.378 -07 000000547 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:26:22.378 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:26:22.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 20:26:22.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:26:22.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:22.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:26:22.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:26:22.478 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:22.478 -07 000000627 INF: Autofocus start
17-03-17 20:26:22.478 -07 000000627 INF: MeasureProfile start
17-03-17 20:26:22.478 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:22.488 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:22.488 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:26:22.488 -07 000000627 INF: MeasureProfile done
17-03-17 20:26:22.488 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:26:22.488 -07 000000627 INF: Autofocus finished
17-03-17 20:26:22.688 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:26:22.688 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:26:22.698 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.17254577251151. ----------
17-03-17 20:26:22.698 -07 000000610 INF: Cycle	38	Tile	19	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:22.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36203, sync = True, waitForSettling = True)
17-03-17 20:26:22.698 -07 000000610 INF: Z Motor: Moving to -0.165727 mm, started at -0.172546 mm, distance = 6.82 um
17-03-17 20:26:22.698 -07 000000610 INF: FPGA: Xmit ZDACW 36203\n [Z Motor]
17-03-17 20:26:22.698 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:26:22.708 -07 000000610 INF: FPGA: 'ZDACW 36203' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:22.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:22.708 -07 000000551 INF: FPGA: Recv ZDACR 36203
17-03-17 20:26:22.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:22.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.868 -07 000000429 INF: FPGA: Recv ZSGSRD 35089
17-03-17 20:26:22.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:22.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.878 -07 000000431 INF: FPGA: Recv ZSGSRD 35083
17-03-17 20:26:22.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.888 -07 000000429 INF: FPGA: Recv ZSGSRD 35083
17-03-17 20:26:22.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.898 -07 000000431 INF: FPGA: Recv ZSGSRD 35085
17-03-17 20:26:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35090
17-03-17 20:26:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35095
17-03-17 20:26:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35085
17-03-17 20:26:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.938 -07 000000431 INF: FPGA: Recv ZSGSRD 35087
17-03-17 20:26:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35089
17-03-17 20:26:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:22.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35088
17-03-17 20:26:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:22.968 -07 000000618 INF: FPGA: Recv ZPIEZORD 30987
17-03-17 20:26:22.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:22.978 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.0 V.
17-03-17 20:26:22.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35087 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35088 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35083 (-164.8 uncal um), Max = 35095 (-164.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:22.978 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35087, posNoise = 8, negNoise = 4
17-03-17 20:26:22.978 -07 000000610 INF: Z Motor: After move to -0.165727, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:22.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:26:22.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:22.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:22.978 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:22.978 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:22.978 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:22.978 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:22.978 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:22.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:22.978 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:26:22.978 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:22.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:22.978 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:22.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:22.988 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:22.988 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:22.988 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:22.988 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:26:22.988 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:26:22.998 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:26:22.998 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:22.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36379 150\n [Camera]
17-03-17 20:26:23.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:23.608 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:23.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:23.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:23.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:23.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:26:23.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:23.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:23.618 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:23.618 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:23.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:26:23.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36379 799
17-03-17 20:26:23.948 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:24.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:26:24.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:26:24.008 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:26:24.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:24.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:26:24.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:24.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:26:24.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:26:24.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:26:24.018 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:26:24.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:24.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:24.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:24.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:24.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:24.268 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:24.278 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:24.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:26:24.278 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:24.278 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:26:24.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:24.348 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:24.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36379 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:26:24.658 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:26:24.658 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:26:24.658 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:24.658 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:26:24.658 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:26:24.658 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:24.668 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:24.668 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:24.668 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:26:24.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:26:24.668 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:26:24.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 20:26:24.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:26:24.748 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:26:24.758 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:26:24.758 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:26:24.758 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 20:26:24.768 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:24.768 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:26:25.268 -07 000000431 INF: FPGA: Recv EMIN
17-03-17 20:26:25.268 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:26:25.268 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:26:25.268 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 20:26:25.278 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:25.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:26:25.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165729683429102. ------
17-03-17 20:26:25.278 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:25.278 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14026 mm
17-03-17 20:26:25.278 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:25.278 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:26:25.278 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 20:26:25.278 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30639, sync = True, waitForSettling = False)
17-03-17 20:26:25.278 -07 000000551 INF: Z Motor: Moving to -0.140256 mm, started at -0.165730 mm, distance = 25.47 um
17-03-17 20:26:25.278 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:25.288 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:25.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:25.288 -07 000000431 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:26:25.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:25.298 -07 000000547 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:25.298 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:26:25.298 -07 000000547 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:26:25.298 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:26:25.308 -07 000000551 INF: FPGA: Xmit ZDACW 30639\n [Z Motor]
17-03-17 20:26:25.308 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:26:25.318 -07 000000551 INF: FPGA: 'ZDACW 30639' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:26:25.318 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:26:25.328 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:25.328 -07 000000448 INF: FPGA: Recv ZDACR 30639
17-03-17 20:26:25.338 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:25.338 -07 000000551 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:26:25.498 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:26:25.498 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:26:25.938 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.999021,
17-03-17 20:26:26.778 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:26.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:26.938 -07 000000382 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 20:26:26.938 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1645 ms overall
17-03-17 20:26:26.938 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:26:26.938 -07 000000547 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:26:26.938 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 20:26:29.788 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:29.788 -07 000000382 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:26:29.798 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.798 -07 000000547 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:29.828 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:29.828 -07 000000547 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 20:26:29.828 -07 000000547 INF: Y Motor: Moved to 59.9116 after 4541 ms
17-03-17 20:26:29.828 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140256 mm (DAC = 30639)
17-03-17 20:26:29.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.828 -07 000000547 INF: FPGA: Recv ZSGSRD 31129
17-03-17 20:26:29.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:29.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.838 -07 000000382 INF: FPGA: Recv ZSGSRD 31118
17-03-17 20:26:29.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.848 -07 000000547 INF: FPGA: Recv ZSGSRD 31120
17-03-17 20:26:29.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.858 -07 000000382 INF: FPGA: Recv ZSGSRD 31121
17-03-17 20:26:29.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.868 -07 000000547 INF: FPGA: Recv ZSGSRD 31120
17-03-17 20:26:29.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.878 -07 000000547 INF: FPGA: Recv ZSGSRD 31128
17-03-17 20:26:29.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.888 -07 000000547 INF: FPGA: Recv ZSGSRD 31128
17-03-17 20:26:29.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.898 -07 000000382 INF: FPGA: Recv ZSGSRD 31122
17-03-17 20:26:29.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.908 -07 000000547 INF: FPGA: Recv ZSGSRD 31126
17-03-17 20:26:29.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:29.918 -07 000000382 INF: FPGA: Recv ZSGSRD 31123
17-03-17 20:26:29.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.928 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:29.928 -07 000000547 INF: FPGA: Recv ZPIEZORD 26835
17-03-17 20:26:29.938 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.675 V. Piezo Error = -9.4 V.
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31124 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31122 (-139.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31118 (-139.4 uncal um), Max = 31129 (-139.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31124, posNoise = 5, negNoise = 6
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: After move to -0.140256, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: Settle wait time = 4544 ms, measure time = 107 ms (allowed 150 ms), total time = 4651 ms
17-03-17 20:26:29.938 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:29.988 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:26:29.988 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:29.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:29.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:29.988 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:29.988 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:29.988 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:26:29.988 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:29.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:29.998 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:26:30.018 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 20:26:30.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:26:30.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:30.018 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:26:30.028 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:26:30.028 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-17 20:26:30.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:26:30.068 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:26:30.268 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:26:30.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:26:30.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:26:30.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:26:30.308 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:26:30.308 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:26:30.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:26:30.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:26:30.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:30.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:26:30.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:26:30.408 -07 000000415 INF: Image SNR check: start
17-03-17 20:26:30.408 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:30.408 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:30.418 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:30.418 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:26:30.418 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=63.60]
17-03-17 20:26:30.418 -07 000000415 INF: Autofocus start
17-03-17 20:26:30.418 -07 000000415 INF: MeasureProfile start
17-03-17 20:26:30.438 -07 000000415 INF: MeasureProfile done
17-03-17 20:26:30.438 -07 000000415 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:26:30.438 -07 000000415 INF: Autofocus finished
17-03-17 20:26:30.618 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:26:30.618 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:26:30.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140270530711303. ----------
17-03-17 20:26:30.618 -07 000000610 INF: Cycle	38	Tile	1	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:30.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29180, sync = True, waitForSettling = True)
17-03-17 20:26:30.628 -07 000000610 INF: Z Motor: Moving to -0.133577 mm, started at -0.140271 mm, distance = 6.69 um
17-03-17 20:26:30.628 -07 000000610 INF: FPGA: Xmit ZDACW 29180\n [Z Motor]
17-03-17 20:26:30.628 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:30.638 -07 000000610 INF: FPGA: 'ZDACW 29180' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:30.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:30.638 -07 000000382 INF: FPGA: Recv ZDACR 29180
17-03-17 20:26:30.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:30.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.798 -07 000000547 INF: FPGA: Recv ZSGSRD 30084
17-03-17 20:26:30.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30088
17-03-17 20:26:30.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.818 -07 000000501 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:26:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:26:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.838 -07 000000415 INF: FPGA: Recv ZSGSRD 30084
17-03-17 20:26:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.848 -07 000000478 INF: FPGA: Recv ZSGSRD 30081
17-03-17 20:26:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30087
17-03-17 20:26:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30080
17-03-17 20:26:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30081
17-03-17 20:26:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:30.888 -07 000000382 INF: FPGA: Recv ZSGSRD 30084
17-03-17 20:26:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:30.898 -07 000000547 INF: FPGA: Recv ZPIEZORD 25706
17-03-17 20:26:30.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:30.908 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.6 V.
17-03-17 20:26:30.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30083 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30082 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30079 (-132.8 uncal um), Max = 30088 (-132.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:30.908 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30083, posNoise = 5, negNoise = 4
17-03-17 20:26:30.908 -07 000000610 INF: Z Motor: After move to -0.133577, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:30.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:26:30.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:30.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:30.908 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:30.908 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:30.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:30.908 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:30.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:30.908 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:30.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:30.908 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:30.918 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:30.918 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:26:30.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:30.918 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:30.928 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:26:30.928 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:26:30.938 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:26:30.938 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:30.938 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:30.938 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:30.948 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:26:30.948 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 20:26:30.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29357 150\n [Camera]
17-03-17 20:26:31.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:31.308 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.004458,
17-03-17 20:26:31.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:31.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:31.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:31.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:31.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:31.568 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:31.568 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) start.
17-03-17 20:26:31.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:31.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:31.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:31.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29357 799
17-03-17 20:26:31.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:31.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:31.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:31.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:26:31.958 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:26:31.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:31.958 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:26:31.958 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:26:32.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:26:32.068 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:26:32.068 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:32.068 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:26:32.078 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 20:26:32.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:32.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:32.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:32.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:32.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:32.108 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:32.108 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:32.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:26:32.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:32.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:32.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:32.298 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:32.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29357 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall
17-03-17 20:26:32.298 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.134114
17-03-17 20:26:32.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13411 mm
17-03-17 20:26:32.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:32.298 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:26:32.298 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 20:26:32.298 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29297, sync = True, waitForSettling = False)
17-03-17 20:26:32.298 -07 000000478 INF: Z Motor: Moving to -0.134113 mm, started at -0.133583 mm, distance = -0.53 um
17-03-17 20:26:32.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:32.298 -07 000000501 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:26:32.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:32.308 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:32.308 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:32.308 -07 000000431 INF: Y Motor: Moving 1330 steps2
17-03-17 20:26:32.308 -07 000000478 INF: FPGA: Xmit ZDACW 29297\n [Z Motor]
17-03-17 20:26:32.308 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:32.318 -07 000000478 INF: FPGA: 'ZDACW 29297' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:26:32.318 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:32.328 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:32.328 -07 000000382 INF: FPGA: Recv ZDACR 29297
17-03-17 20:26:32.338 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:32.338 -07 000000478 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:26:32.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:26:32.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:26:32.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:32.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:26:32.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:26:32.508 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:32.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:32.508 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:26:32.508 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:32.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:26:32.688 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:26:32.688 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 20:26:32.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:32.728 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:26:32.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:32.728 -07 000000431 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:32.728 -07 000000431 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:26:32.728 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.147 mm/sec
17-03-17 20:26:33.678 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:33.678 -07 000000501 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:26:33.688 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:33.688 -07 000000431 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:33.708 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:33.708 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:33.708 -07 000000431 INF: Y Motor: Moved to 60.7339 after 1407 ms (table move)
17-03-17 20:26:33.708 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134113 mm (DAC = 29297)
17-03-17 20:26:33.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.708 -07 000000012 INF: FPGA: Recv ZSGSRD 30161
17-03-17 20:26:33.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.718 -07 000000012 INF: FPGA: Recv ZSGSRD 30160
17-03-17 20:26:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.728 -07 000000012 INF: FPGA: Recv ZSGSRD 30162
17-03-17 20:26:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.738 -07 000000431 INF: FPGA: Recv ZSGSRD 30167
17-03-17 20:26:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30169
17-03-17 20:26:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.758 -07 000000431 INF: FPGA: Recv ZSGSRD 30176
17-03-17 20:26:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30164
17-03-17 20:26:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.778 -07 000000012 INF: FPGA: Recv ZSGSRD 30163
17-03-17 20:26:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.788 -07 000000012 INF: FPGA: Recv ZSGSRD 30165
17-03-17 20:26:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:33.798 -07 000000431 INF: FPGA: Recv ZSGSRD 30159
17-03-17 20:26:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:33.808 -07 000000012 INF: FPGA: Recv ZPIEZORD 25855
17-03-17 20:26:33.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.5 V.
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30165 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30164 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30159 (-133.3 uncal um), Max = 30176 (-133.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30165, posNoise = 11, negNoise = 6
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: After move to -0.134113, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 105 ms (allowed 150 ms), total time = 1514 ms
17-03-17 20:26:33.818 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:33.868 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 20:26:33.868 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:33.868 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.134109711267354. ----------
17-03-17 20:26:33.868 -07 000000610 INF: Cycle	38	Tile	2	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:33.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29120, sync = True, waitForSettling = True)
17-03-17 20:26:33.868 -07 000000610 INF: Z Motor: Moving to -0.133303 mm, started at -0.134110 mm, distance = 0.81 um
17-03-17 20:26:33.868 -07 000000610 INF: FPGA: Xmit ZDACW 29120\n [Z Motor]
17-03-17 20:26:33.868 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:26:33.878 -07 000000610 INF: FPGA: 'ZDACW 29120' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:33.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:33.878 -07 000000012 INF: FPGA: Recv ZDACR 29120
17-03-17 20:26:33.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:33.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:34.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.038 -07 000000431 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:26:34.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:34.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.048 -07 000000501 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:26:34.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.058 -07 000000431 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:26:34.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.068 -07 000000501 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:26:34.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.078 -07 000000012 INF: FPGA: Recv ZSGSRD 30047
17-03-17 20:26:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:26:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.098 -07 000000012 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:26:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.108 -07 000000012 INF: FPGA: Recv ZSGSRD 30042
17-03-17 20:26:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.118 -07 000000431 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:26:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:34.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30050
17-03-17 20:26:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:34.138 -07 000000012 INF: FPGA: Recv ZPIEZORD 25707
17-03-17 20:26:34.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:34.148 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.5 V.
17-03-17 20:26:34.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30041 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30041 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30033 (-132.5 uncal um), Max = 30050 (-132.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:26:34.148 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30041, posNoise = 9, negNoise = 8
17-03-17 20:26:34.148 -07 000000610 INF: Z Motor: After move to -0.133303, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:34.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:26:34.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:34.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:34.148 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:34.148 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:34.148 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:34.148 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:34.148 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:34.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:34.148 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:34.148 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:34.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:34.148 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:34.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:34.158 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:34.158 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:34.158 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:34.168 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:26:34.168 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:26:34.168 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:26:34.168 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:26:34.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29297 150\n [Camera]
17-03-17 20:26:34.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:34.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:34.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:34.788 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:34.788 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:34.788 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:26:34.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:34.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:34.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:34.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:34.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:26:34.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29297 800
17-03-17 20:26:35.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:35.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:26:35.188 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:26:35.188 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:35.188 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:35.188 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:26:35.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:26:35.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:26:35.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:35.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:35.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:26:35.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:35.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:35.328 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:35.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:35.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:26:35.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:35.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:35.338 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:35.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:35.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:26:35.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:35.528 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:35.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29297 150' command took 2 ms to send, 1340 ms to get response, and 1351 ms overall
17-03-17 20:26:35.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:26:35.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133313108961776. ------
17-03-17 20:26:35.528 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:35.528 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.14002 mm
17-03-17 20:26:35.528 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:35.528 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:35.528 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:26:35.538 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 20:26:35.538 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:35.538 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:35.538 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30588, sync = True, waitForSettling = False)
17-03-17 20:26:35.538 -07 000000627 INF: Z Motor: Moving to -0.140023 mm, started at -0.133313 mm, distance = -6.71 um
17-03-17 20:26:35.538 -07 000000448 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:26:35.548 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:35.548 -07 000000478 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:35.548 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:35.548 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:26:35.548 -07 000000627 INF: FPGA: Xmit ZDACW 30588\n [Z Motor]
17-03-17 20:26:35.548 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:26:35.558 -07 000000627 INF: FPGA: 'ZDACW 30588' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:26:35.558 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:26:35.568 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:35.578 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:35.578 -07 000000618 INF: FPGA: Recv ZDACR 30588
17-03-17 20:26:35.588 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:26:35.588 -07 000000627 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:26:35.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:26:35.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:26:35.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:35.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:26:35.738 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:26:35.738 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:35.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:35.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:26:35.748 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:35.748 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:26:35.758 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:26:35.758 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:26:35.938 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:26:35.938 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:26:35.978 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:35.978 -07 000000547 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:26:35.988 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:35.988 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:35.988 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:26:35.988 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 20:26:36.678 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.999021,
17-03-17 20:26:36.778 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:36.938 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:36.938 -07 000000448 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:26:36.948 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:36.948 -07 000000478 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:36.968 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:36.968 -07 000000478 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:36.968 -07 000000478 INF: Y Motor: Moved to 61.5649 after 1432 ms (table move)
17-03-17 20:26:36.968 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140023 mm (DAC = 30588)
17-03-17 20:26:36.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:36.968 -07 000000431 INF: FPGA: Recv ZSGSRD 31086
17-03-17 20:26:36.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:36.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:36.978 -07 000000627 INF: FPGA: Recv ZSGSRD 31085
17-03-17 20:26:36.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:36.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:36.988 -07 000000478 INF: FPGA: Recv ZSGSRD 31087
17-03-17 20:26:36.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:36.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:36.998 -07 000000627 INF: FPGA: Recv ZSGSRD 31081
17-03-17 20:26:37.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.008 -07 000000618 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:26:37.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.018 -07 000000608 INF: FPGA: Recv ZSGSRD 31089
17-03-17 20:26:37.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.048 -07 000000547 INF: FPGA: Recv ZSGSRD 31081
17-03-17 20:26:37.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:26:37.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.058 -07 000000551 INF: FPGA: Recv ZSGSRD 31088
17-03-17 20:26:37.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:37.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.088 -07 000000627 INF: FPGA: Recv ZSGSRD 31088
17-03-17 20:26:37.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:26:37.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.098 -07 000000012 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:26:37.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.118 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:37.118 -07 000000627 INF: FPGA: Recv ZPIEZORD 27065
17-03-17 20:26:37.128 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.9 V.
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31085 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31086 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31081 (-139.2 uncal um), Max = 31089 (-139.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31085, posNoise = 4, negNoise = 4
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: After move to -0.140023, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: Settle wait time = 1434 ms, measure time = 155 ms (allowed 150 ms), total time = 1589 ms
17-03-17 20:26:37.128 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 20:26:37.128 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:26:37.128 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:37.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:37.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:37.128 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:37.128 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:37.128 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:26:37.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:37.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:37.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:26:37.138 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:37.138 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:26:37.148 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:26:37.148 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:26:37.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:26:37.198 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:26:37.398 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:26:37.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:26:37.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:26:37.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:26:37.428 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:26:37.438 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:26:37.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:26:37.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:26:37.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:37.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:26:37.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:26:37.538 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:37.538 -07 000000012 INF: Autofocus start
17-03-17 20:26:37.538 -07 000000012 INF: MeasureProfile start
17-03-17 20:26:37.538 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:37.548 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:37.548 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:26:37.548 -07 000000012 INF: MeasureProfile done
17-03-17 20:26:37.548 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:26:37.548 -07 000000012 INF: Autofocus finished
17-03-17 20:26:37.748 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:26:37.748 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:26:37.748 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.140019986437774. ----------
17-03-17 20:26:37.748 -07 000000610 INF: Cycle	38	Tile	3	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:37.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29083, sync = True, waitForSettling = True)
17-03-17 20:26:37.758 -07 000000610 INF: Z Motor: Moving to -0.133133 mm, started at -0.140020 mm, distance = 6.89 um
17-03-17 20:26:37.758 -07 000000610 INF: FPGA: Xmit ZDACW 29083\n [Z Motor]
17-03-17 20:26:37.758 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:26:37.768 -07 000000610 INF: FPGA: 'ZDACW 29083' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:37.768 -07 000000012 INF: FPGA: Recv ZDACR 29083
17-03-17 20:26:37.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:37.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.928 -07 000000012 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:26:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:37.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.938 -07 000000012 INF: FPGA: Recv ZSGSRD 30014
17-03-17 20:26:37.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:26:37.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30011
17-03-17 20:26:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:26:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30017
17-03-17 20:26:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.988 -07 000000502 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:26:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:37.998 -07 000000012 INF: FPGA: Recv ZSGSRD 30008
17-03-17 20:26:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:38.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30023
17-03-17 20:26:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:38.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:38.018 -07 000000478 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:26:38.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:38.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:38.028 -07 000000478 INF: FPGA: Recv ZPIEZORD 25677
17-03-17 20:26:38.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:38.038 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.5 V.
17-03-17 20:26:38.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30014 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30015 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30023 (-132.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:38.038 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30014, posNoise = 9, negNoise = 6
17-03-17 20:26:38.038 -07 000000610 INF: Z Motor: After move to -0.133133, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:38.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:26:38.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:38.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:38.038 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:38.038 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:38.038 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:38.038 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:38.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:38.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:38.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:38.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:38.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:38.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:38.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:38.038 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:38.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:38.048 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:38.058 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:26:38.058 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:26:38.058 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:26:38.058 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:26:38.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29260 150\n [Camera]
17-03-17 20:26:38.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:38.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:38.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:38.678 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:38.678 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:38.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:26:38.688 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:38.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:38.688 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:38.688 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:38.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:26:38.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29260 799
17-03-17 20:26:39.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:39.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:26:39.068 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:26:39.068 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:39.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:26:39.068 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:26:39.068 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:39.068 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:39.068 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:26:39.068 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:39.078 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:26:39.218 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:39.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:39.218 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:39.218 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:39.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:26:39.228 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:39.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:39.228 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:39.228 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:39.228 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:26:39.408 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:39.418 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:39.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29260 150' command took 3 ms to send, 1340 ms to get response, and 1348 ms overall
17-03-17 20:26:39.418 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133241
17-03-17 20:26:39.418 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13324 mm
17-03-17 20:26:39.418 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:39.418 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:26:39.418 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 20:26:39.418 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:39.418 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29106, sync = True, waitForSettling = False)
17-03-17 20:26:39.418 -07 000000501 INF: Z Motor: Moving to -0.133239 mm, started at -0.133140 mm, distance = -0.10 um
17-03-17 20:26:39.418 -07 000000478 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:26:39.428 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:39.428 -07 000000501 INF: FPGA: Xmit ZDACW 29106\n [Z Motor]
17-03-17 20:26:39.428 -07 000000608 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:39.428 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:39.428 -07 000000608 INF: Y Motor: Moving 1340 steps-17
17-03-17 20:26:39.428 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:26:39.438 -07 000000501 INF: FPGA: 'ZDACW 29106' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:26:39.438 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:39.438 -07 000000431 INF: FPGA: Recv ZDACR 29106
17-03-17 20:26:39.448 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:39.448 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:39.448 -07 000000501 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 20:26:39.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:26:39.608 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:26:39.608 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:39.608 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:26:39.608 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:26:39.608 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:39.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:39.618 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:26:39.618 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:26:39.618 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:26:39.818 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:26:39.818 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:26:39.858 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:39.858 -07 000000448 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:26:39.868 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:39.868 -07 000000608 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:39.868 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:26:39.868 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 20:26:40.818 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:40.818 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:26:40.828 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:40.828 -07 000000608 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:40.848 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:40.848 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:40.848 -07 000000608 INF: Y Motor: Moved to 62.3960 after 1426 ms (table move)
17-03-17 20:26:40.848 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133239 mm (DAC = 29106)
17-03-17 20:26:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:26:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:26:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.868 -07 000000502 INF: FPGA: Recv ZSGSRD 30030
17-03-17 20:26:40.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:26:40.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.888 -07 000000431 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:26:40.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.898 -07 000000478 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:26:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.908 -07 000000502 INF: FPGA: Recv ZSGSRD 30026
17-03-17 20:26:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.918 -07 000000608 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:26:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:26:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:40.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:26:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:40.948 -07 000000012 INF: FPGA: Recv ZPIEZORD 25743
17-03-17 20:26:40.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.4 V.
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30032 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30026 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 3, negNoise = 6
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: After move to -0.133239, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:26:40.958 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:41.008 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 20:26:41.008 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:41.008 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.1332552910525. ----------
17-03-17 20:26:41.008 -07 000000610 INF: Cycle	38	Tile	4	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:41.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28930, sync = True, waitForSettling = True)
17-03-17 20:26:41.008 -07 000000610 INF: Z Motor: Moving to -0.132433 mm, started at -0.133255 mm, distance = 0.82 um
17-03-17 20:26:41.008 -07 000000610 INF: FPGA: Xmit ZDACW 28930\n [Z Motor]
17-03-17 20:26:41.008 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:26:41.018 -07 000000610 INF: FPGA: 'ZDACW 28930' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:41.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:41.018 -07 000000502 INF: FPGA: Recv ZDACR 28930
17-03-17 20:26:41.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.178 -07 000000608 INF: FPGA: Recv ZSGSRD 29907
17-03-17 20:26:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.188 -07 000000012 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:26:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.198 -07 000000501 INF: FPGA: Recv ZSGSRD 29905
17-03-17 20:26:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.208 -07 000000478 INF: FPGA: Recv ZSGSRD 29904
17-03-17 20:26:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.218 -07 000000608 INF: FPGA: Recv ZSGSRD 29907
17-03-17 20:26:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.228 -07 000000431 INF: FPGA: Recv ZSGSRD 29903
17-03-17 20:26:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29906
17-03-17 20:26:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29906
17-03-17 20:26:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.258 -07 000000448 INF: FPGA: Recv ZSGSRD 29907
17-03-17 20:26:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:41.268 -07 000000478 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:26:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:41.278 -07 000000627 INF: FPGA: Recv ZPIEZORD 25592
17-03-17 20:26:41.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:41.288 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.5 V.
17-03-17 20:26:41.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29906 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29906 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29903 (-131.6 uncal um), Max = 29909 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:26:41.288 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29906, posNoise = 3, negNoise = 3
17-03-17 20:26:41.288 -07 000000610 INF: Z Motor: After move to -0.132433, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:41.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:26:41.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:41.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:41.288 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:41.288 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:41.288 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:41.288 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:41.288 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:41.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:41.288 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:41.288 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:41.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:41.288 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:41.298 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:41.298 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:41.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:41.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:41.308 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:26:41.308 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:26:41.308 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:26:41.308 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:26:41.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29106 150\n [Camera]
17-03-17 20:26:41.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:41.788 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:41.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:41.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:41.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:41.928 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:41.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:26:41.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:41.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:41.928 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:42.068 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:42.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:42.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.994908,
17-03-17 20:26:42.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29106 801
17-03-17 20:26:42.268 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:42.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:26:42.318 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:26:42.318 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:42.318 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:42.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:26:42.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:26:42.438 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:26:42.438 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:42.448 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:42.448 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 20:26:42.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:42.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:42.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:42.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:42.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:42.468 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:42.468 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:42.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:26:42.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:42.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:42.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:42.658 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:42.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29106 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:26:42.658 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133069
17-03-17 20:26:42.658 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13307 mm
17-03-17 20:26:42.658 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:42.668 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:26:42.668 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 20:26:42.668 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29069, sync = True, waitForSettling = False)
17-03-17 20:26:42.668 -07 000000502 INF: Z Motor: Moving to -0.133069 mm, started at -0.132446 mm, distance = -0.62 um
17-03-17 20:26:42.668 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:42.668 -07 000000429 INF: FPGA: Recv YRDPOS 127788
17-03-17 20:26:42.678 -07 000000382 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:42.678 -07 000000382 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:42.678 -07 000000502 INF: FPGA: Xmit ZDACW 29069\n [Z Motor]
17-03-17 20:26:42.678 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:42.678 -07 000000382 INF: Y Motor: Moving 1338 steps-14
17-03-17 20:26:42.678 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:26:42.688 -07 000000502 INF: FPGA: 'ZDACW 29069' command took 7 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:42.688 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:42.698 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:42.698 -07 000000618 INF: FPGA: Recv ZDACR 29069
17-03-17 20:26:42.708 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:42.708 -07 000000502 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:26:42.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:26:42.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:26:42.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:42.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:26:42.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:26:42.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:42.858 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:42.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:26:42.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:42.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:26:43.058 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:26:43.058 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 20:26:43.098 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:43.098 -07 000000627 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:26:43.108 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:43.108 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:43.108 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:26:43.108 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.837 mm, average velocity = 2.196 mm/sec
17-03-17 20:26:44.058 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:44.058 -07 000000415 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:26:44.068 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:44.068 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:44.088 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:44.088 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:44.088 -07 000000382 INF: Y Motor: Moved to 63.2251 after 1421 ms (table move)
17-03-17 20:26:44.088 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133069 mm (DAC = 29069)
17-03-17 20:26:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29999
17-03-17 20:26:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30001
17-03-17 20:26:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30001
17-03-17 20:26:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.118 -07 000000382 INF: FPGA: Recv ZSGSRD 30002
17-03-17 20:26:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30006
17-03-17 20:26:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:26:44.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30005
17-03-17 20:26:44.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.158 -07 000000415 INF: FPGA: Recv ZSGSRD 30006
17-03-17 20:26:44.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29999
17-03-17 20:26:44.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.178 -07 000000415 INF: FPGA: Recv ZSGSRD 29999
17-03-17 20:26:44.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:44.188 -07 000000415 INF: FPGA: Recv ZPIEZORD 25739
17-03-17 20:26:44.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.4 V.
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30003 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30002 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29999 (-132.3 uncal um), Max = 30013 (-132.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30003, posNoise = 10, negNoise = 4
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: After move to -0.133069, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 105 ms (allowed 150 ms), total time = 1529 ms
17-03-17 20:26:44.198 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:44.248 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:26:44.248 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:44.248 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133068988900389. ----------
17-03-17 20:26:44.248 -07 000000610 INF: Cycle	38	Tile	5	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:44.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28892, sync = True, waitForSettling = True)
17-03-17 20:26:44.248 -07 000000610 INF: Z Motor: Moving to -0.132259 mm, started at -0.133069 mm, distance = 0.81 um
17-03-17 20:26:44.248 -07 000000610 INF: FPGA: Xmit ZDACW 28892\n [Z Motor]
17-03-17 20:26:44.248 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:26:44.258 -07 000000610 INF: FPGA: 'ZDACW 28892' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:44.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:44.258 -07 000000551 INF: FPGA: Recv ZDACR 28892
17-03-17 20:26:44.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.418 -07 000000448 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:26:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.428 -07 000000448 INF: FPGA: Recv ZSGSRD 29880
17-03-17 20:26:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.438 -07 000000448 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:26:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:26:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.458 -07 000000551 INF: FPGA: Recv ZSGSRD 29884
17-03-17 20:26:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:26:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:26:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.488 -07 000000551 INF: FPGA: Recv ZSGSRD 29880
17-03-17 20:26:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29883
17-03-17 20:26:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:44.508 -07 000000627 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:26:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:44.518 -07 000000627 INF: FPGA: Recv ZPIEZORD 25570
17-03-17 20:26:44.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:44.528 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.5 V.
17-03-17 20:26:44.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29880 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29880 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29876 (-131.5 uncal um), Max = 29884 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:44.528 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29880, posNoise = 4, negNoise = 4
17-03-17 20:26:44.528 -07 000000610 INF: Z Motor: After move to -0.132259, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:44.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:26:44.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:44.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:44.528 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:44.528 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:44.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:44.528 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:44.528 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:44.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:44.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:44.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:44.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:26:44.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:44.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:44.528 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:44.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:44.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:44.548 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:26:44.548 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:26:44.548 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:26:44.548 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:26:44.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29069 150\n [Camera]
17-03-17 20:26:44.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:45.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:45.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:45.168 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:45.168 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:45.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:26:45.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:45.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:45.168 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:45.288 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:45.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:45.358 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29069 799
17-03-17 20:26:45.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:45.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:26:45.548 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:26:45.548 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:45.548 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:45.548 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:26:45.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:26:45.658 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 20:26:45.658 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:45.658 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:45.668 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 20:26:45.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:45.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:45.708 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:45.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:45.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:45.708 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:45.708 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:45.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:45.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:45.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:26:45.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:45.898 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:45.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29069 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:26:45.898 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132744
17-03-17 20:26:45.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13274 mm
17-03-17 20:26:45.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:45.908 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:26:45.908 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 20:26:45.908 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:45.908 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 28998, sync = True, waitForSettling = False)
17-03-17 20:26:45.908 -07 000000429 INF: Z Motor: Moving to -0.132744 mm, started at -0.132279 mm, distance = -0.47 um
17-03-17 20:26:45.908 -07 000000551 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:26:45.918 -07 000000429 INF: FPGA: Xmit ZDACW 28998\n [Z Motor]
17-03-17 20:26:45.918 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:45.918 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:45.918 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:45.918 -07 000000502 INF: Y Motor: Moving 1340 steps-15
17-03-17 20:26:45.918 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:26:45.928 -07 000000429 INF: FPGA: 'ZDACW 28998' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:26:45.928 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:45.938 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:45.938 -07 000000012 INF: FPGA: Recv ZDACR 28998
17-03-17 20:26:45.948 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:45.948 -07 000000429 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:26:46.088 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:26:46.088 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:26:46.088 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:46.098 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:46.098 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:26:46.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:26:46.098 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:26:46.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:46.098 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:46.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:26:46.298 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:26:46.298 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:26:46.338 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:46.338 -07 000000478 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:26:46.348 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:46.348 -07 000000502 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:46.348 -07 000000502 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 20:26:46.348 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.170 mm/sec
17-03-17 20:26:46.788 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:47.298 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:47.298 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:26:47.308 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.308 -07 000000502 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:47.318 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:47.318 -07 000000502 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:47.318 -07 000000502 INF: Y Motor: Moved to 64.0576 after 1417 ms (table move)
17-03-17 20:26:47.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132744 mm (DAC = 28998)
17-03-17 20:26:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29953
17-03-17 20:26:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.338 -07 000000627 INF: FPGA: Recv ZSGSRD 29952
17-03-17 20:26:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.348 -07 000000627 INF: FPGA: Recv ZSGSRD 29952
17-03-17 20:26:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.358 -07 000000627 INF: FPGA: Recv ZSGSRD 29956
17-03-17 20:26:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29960
17-03-17 20:26:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.378 -07 000000627 INF: FPGA: Recv ZSGSRD 29955
17-03-17 20:26:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.388 -07 000000502 INF: FPGA: Recv ZSGSRD 29951
17-03-17 20:26:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29952
17-03-17 20:26:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.408 -07 000000627 INF: FPGA: Recv ZSGSRD 29954
17-03-17 20:26:47.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.418 -07 000000502 INF: FPGA: Recv ZSGSRD 29953
17-03-17 20:26:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:47.438 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.990831,
17-03-17 20:26:47.438 -07 000000429 INF: FPGA: Recv ZPIEZORD 25729
17-03-17 20:26:47.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -9.3 V.
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29953 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29951 (-131.9 uncal um), Max = 29960 (-132.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 6, negNoise = 3
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: After move to -0.132744, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 120 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:26:47.448 -07 000000610 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:47.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 20:26:47.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:47.478 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.132754202505443. ----------
17-03-17 20:26:47.478 -07 000000610 INF: Cycle	38	Tile	6	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:47.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28821, sync = True, waitForSettling = True)
17-03-17 20:26:47.478 -07 000000610 INF: Z Motor: Moving to -0.131934 mm, started at -0.132754 mm, distance = 0.82 um
17-03-17 20:26:47.498 -07 000000610 INF: FPGA: Xmit ZDACW 28821\n [Z Motor]
17-03-17 20:26:47.498 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:26:47.508 -07 000000610 INF: FPGA: 'ZDACW 28821' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:26:47.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:47.508 -07 000000502 INF: FPGA: Recv ZDACR 28821
17-03-17 20:26:47.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29832
17-03-17 20:26:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29834
17-03-17 20:26:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29830
17-03-17 20:26:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.698 -07 000000627 INF: FPGA: Recv ZSGSRD 29831
17-03-17 20:26:47.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29823
17-03-17 20:26:47.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29830
17-03-17 20:26:47.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:26:47.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.738 -07 000000431 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:26:47.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:26:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:47.758 -07 000000608 INF: FPGA: Recv ZSGSRD 29830
17-03-17 20:26:47.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:47.768 -07 000000501 INF: FPGA: Recv ZPIEZORD 25508
17-03-17 20:26:47.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:47.778 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.5 V.
17-03-17 20:26:47.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29829 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29834 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:47.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29829, posNoise = 5, negNoise = 6
17-03-17 20:26:47.778 -07 000000610 INF: Z Motor: After move to -0.131934, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:47.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 20:26:47.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:47.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:47.778 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:47.778 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:47.778 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:47.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:47.778 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:47.778 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:47.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:47.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:47.778 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:47.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:47.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:47.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:47.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:26:47.778 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:47.798 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:26:47.798 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:26:47.798 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:26:47.798 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:26:47.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28998 150\n [Camera]
17-03-17 20:26:48.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:48.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:48.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:48.428 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:48.428 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:48.428 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:26:48.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:48.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:48.428 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:48.428 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:48.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:26:48.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28998 799
17-03-17 20:26:48.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:48.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:26:48.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:26:48.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:48.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:26:48.818 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:26:48.818 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:48.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:48.818 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:48.818 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:26:48.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:26:48.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:48.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:48.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:48.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:48.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:26:48.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:48.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:48.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:48.968 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:48.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 20:26:49.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:49.158 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:49.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28998 150' command took 2 ms to send, 1338 ms to get response, and 1360 ms overall
17-03-17 20:26:49.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:26:49.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131951175987723. ------
17-03-17 20:26:49.168 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:49.168 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13855 mm
17-03-17 20:26:49.168 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:49.168 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:49.168 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:26:49.168 -07 000000547 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 20:26:49.168 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30267, sync = True, waitForSettling = False)
17-03-17 20:26:49.168 -07 000000448 INF: Z Motor: Moving to -0.138553 mm, started at -0.131951 mm, distance = -6.60 um
17-03-17 20:26:49.178 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:49.178 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:49.178 -07 000000415 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:26:49.188 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:49.188 -07 000000547 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:49.188 -07 000000547 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:49.188 -07 000000547 INF: Y Motor: Moving 1336 steps-10
17-03-17 20:26:49.188 -07 000000448 INF: FPGA: Xmit ZDACW 30267\n [Z Motor]
17-03-17 20:26:49.188 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:26:49.198 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:26:49.198 -07 000000448 INF: FPGA: 'ZDACW 30267' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:26:49.208 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:49.218 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:49.218 -07 000000608 INF: FPGA: Recv ZDACR 30267
17-03-17 20:26:49.228 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:26:49.228 -07 000000448 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:26:49.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:26:49.348 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:26:49.348 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:49.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:26:49.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:26:49.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:49.358 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:49.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:49.358 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:26:49.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:26:49.398 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:26:49.398 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:26:49.588 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:26:49.588 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 20:26:49.628 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:49.638 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:26:49.638 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:26:49.638 -07 000000547 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:49.638 -07 000000547 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:26:49.638 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.835 mm, average velocity = 2.082 mm/sec
17-03-17 20:26:50.588 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:50.588 -07 000000415 INF: FPGA: Recv YRDPOS 132874
17-03-17 20:26:50.598 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.598 -07 000000547 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:50.618 -07 000000547 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:50.618 -07 000000547 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:50.618 -07 000000547 INF: Y Motor: Moved to 64.8799 after 1444 ms (table move)
17-03-17 20:26:50.618 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138553 mm (DAC = 30267)
17-03-17 20:26:50.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.618 -07 000000415 INF: FPGA: Recv ZSGSRD 30863
17-03-17 20:26:50.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:26:50.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.628 -07 000000415 INF: FPGA: Recv ZSGSRD 30861
17-03-17 20:26:50.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.638 -07 000000547 INF: FPGA: Recv ZSGSRD 30856
17-03-17 20:26:50.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:50.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.648 -07 000000448 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:26:50.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:50.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:26:50.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.668 -07 000000608 INF: FPGA: Recv ZSGSRD 30866
17-03-17 20:26:50.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.678 -07 000000547 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:26:50.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.688 -07 000000415 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:26:50.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.698 -07 000000608 INF: FPGA: Recv ZSGSRD 30850
17-03-17 20:26:50.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:50.708 -07 000000608 INF: FPGA: Recv ZSGSRD 30848
17-03-17 20:26:50.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.718 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:50.718 -07 000000547 INF: FPGA: Recv ZPIEZORD 26860
17-03-17 20:26:50.728 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.8 V.
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30857 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30856 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30848 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30857, posNoise = 9, negNoise = 9
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: After move to -0.138553, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:26:50.728 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:50.778 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:26:50.778 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:50.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:50.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:50.778 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:50.778 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:50.778 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:26:50.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:50.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:26:50.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:26:50.788 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:50.788 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:26:50.798 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:26:50.798 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:26:50.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:26:50.848 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:26:51.048 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:26:51.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:26:51.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:26:51.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:26:51.088 -07 000000382 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:26:51.088 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:26:51.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 20:26:51.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:26:51.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:51.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:26:51.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:26:51.188 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:26:51.188 -07 000000551 INF: Autofocus start
17-03-17 20:26:51.188 -07 000000551 INF: MeasureProfile start
17-03-17 20:26:51.188 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:26:51.198 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:51.198 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:26:51.198 -07 000000551 INF: MeasureProfile done
17-03-17 20:26:51.198 -07 000000551 INF: X=12  Z correction [um]=0.03377635
17-03-17 20:26:51.198 -07 000000551 INF: Autofocus finished
17-03-17 20:26:51.398 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:26:51.398 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:26:51.398 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138555266069453. ----------
17-03-17 20:26:51.398 -07 000000610 INF: Cycle	38	Tile	7	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:51.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28786, sync = True, waitForSettling = True)
17-03-17 20:26:51.408 -07 000000610 INF: Z Motor: Moving to -0.131774 mm, started at -0.138555 mm, distance = 6.78 um
17-03-17 20:26:51.408 -07 000000610 INF: FPGA: Xmit ZDACW 28786\n [Z Motor]
17-03-17 20:26:51.408 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:26:51.418 -07 000000610 INF: FPGA: 'ZDACW 28786' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:26:51.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:51.418 -07 000000478 INF: FPGA: Recv ZDACR 28786
17-03-17 20:26:51.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:51.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:26:51.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:51.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29801
17-03-17 20:26:51.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.598 -07 000000431 INF: FPGA: Recv ZSGSRD 29804
17-03-17 20:26:51.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:26:51.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.618 -07 000000551 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:26:51.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.628 -07 000000478 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:26:51.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29799
17-03-17 20:26:51.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.648 -07 000000478 INF: FPGA: Recv ZSGSRD 29804
17-03-17 20:26:51.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.658 -07 000000431 INF: FPGA: Recv ZSGSRD 29804
17-03-17 20:26:51.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:51.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29800
17-03-17 20:26:51.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:51.678 -07 000000431 INF: FPGA: Recv ZPIEZORD 25492
17-03-17 20:26:51.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:51.688 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.5 V.
17-03-17 20:26:51.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29803 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29803 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29799 (-131.0 uncal um), Max = 29806 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:26:51.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29803, posNoise = 3, negNoise = 4
17-03-17 20:26:51.688 -07 000000610 INF: Z Motor: After move to -0.131774, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:51.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:26:51.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:51.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:51.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:51.688 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:51.688 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:51.688 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:51.688 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:51.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:51.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:26:51.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:51.688 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:26:51.688 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:51.698 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:51.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:51.698 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:26:51.698 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:51.708 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:26:51.708 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:26:51.708 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:26:51.708 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:26:51.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28963 150\n [Camera]
17-03-17 20:26:51.788 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:51.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:52.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:52.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:52.328 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:52.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:52.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 20:26:52.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:52.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:52.328 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:52.328 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:52.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:26:52.518 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28963 799
17-03-17 20:26:52.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:52.708 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:26:52.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:26:52.708 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:26:52.708 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:52.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:26:52.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:52.718 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:52.718 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:26:52.718 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:52.718 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:26:52.858 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.003063,
17-03-17 20:26:52.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:52.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:52.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:52.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:52.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:52.878 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:52.878 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:52.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:26:52.878 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:52.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:26:53.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:26:53.058 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:53.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28963 150' command took 2 ms to send, 1338 ms to get response, and 1348 ms overall
17-03-17 20:26:53.058 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132334
17-03-17 20:26:53.068 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13233 mm
17-03-17 20:26:53.068 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:53.068 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28908, sync = True, waitForSettling = False)
17-03-17 20:26:53.068 -07 000000382 INF: Z Motor: Moving to -0.132332 mm, started at -0.131784 mm, distance = -0.55 um
17-03-17 20:26:53.068 -07 000000382 INF: FPGA: Xmit ZDACW 28908\n [Z Motor]
17-03-17 20:26:53.068 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:26:53.068 -07 000000608 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 20:26:53.068 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:26:53.078 -07 000000382 INF: FPGA: 'ZDACW 28908' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:53.078 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:53.078 -07 000000478 INF: FPGA: Recv ZDACR 28908
17-03-17 20:26:53.088 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:53.088 -07 000000382 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 20:26:53.088 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:53.088 -07 000000502 INF: FPGA: Recv YRDPOS 132874
17-03-17 20:26:53.098 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:26:53.098 -07 000000608 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:53.098 -07 000000608 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:53.098 -07 000000608 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:26:53.098 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:53.268 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:26:53.268 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:26:53.268 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:53.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:26:53.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:26:53.268 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:53.268 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:53.268 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:53.268 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:26:53.278 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:26:53.478 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:26:53.478 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 20:26:53.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:53.518 -07 000000618 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:26:53.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:26:53.518 -07 000000608 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:53.518 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:26:53.518 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 20:26:54.468 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:54.468 -07 000000478 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:26:54.478 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:54.478 -07 000000608 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:54.498 -07 000000608 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:54.498 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:26:54.498 -07 000000608 INF: Y Motor: Moved to 65.7148 after 1427 ms (table move)
17-03-17 20:26:54.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132332 mm (DAC = 28908)
17-03-17 20:26:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:26:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.508 -07 000000431 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:26:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.518 -07 000000478 INF: FPGA: Recv ZSGSRD 29889
17-03-17 20:26:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.528 -07 000000608 INF: FPGA: Recv ZSGSRD 29891
17-03-17 20:26:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29880
17-03-17 20:26:54.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.548 -07 000000551 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:26:54.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.558 -07 000000431 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:26:54.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.568 -07 000000478 INF: FPGA: Recv ZSGSRD 29891
17-03-17 20:26:54.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:26:54.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.588 -07 000000627 INF: FPGA: Recv ZSGSRD 29890
17-03-17 20:26:54.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:54.598 -07 000000551 INF: FPGA: Recv ZPIEZORD 25589
17-03-17 20:26:54.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.4 V.
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29890 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29891 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29880 (-131.5 uncal um), Max = 29895 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29890, posNoise = 5, negNoise = 10
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: After move to -0.132332, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:26:54.608 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:54.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:26:54.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:54.658 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.13234305292837. ----------
17-03-17 20:26:54.658 -07 000000610 INF: Cycle	38	Tile	8	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:54.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28732, sync = True, waitForSettling = True)
17-03-17 20:26:54.658 -07 000000610 INF: Z Motor: Moving to -0.131527 mm, started at -0.132343 mm, distance = 0.82 um
17-03-17 20:26:54.658 -07 000000610 INF: FPGA: Xmit ZDACW 28732\n [Z Motor]
17-03-17 20:26:54.658 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:26:54.668 -07 000000610 INF: FPGA: 'ZDACW 28732' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:54.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:54.668 -07 000000478 INF: FPGA: Recv ZDACR 28732
17-03-17 20:26:54.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.828 -07 000000608 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:26:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.838 -07 000000478 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:26:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.848 -07 000000608 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:26:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.858 -07 000000478 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:26:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.868 -07 000000618 INF: FPGA: Recv ZSGSRD 29764
17-03-17 20:26:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.878 -07 000000431 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:26:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:26:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.888 -07 000000012 INF: FPGA: Recv ZSGSRD 29768
17-03-17 20:26:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29761
17-03-17 20:26:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.908 -07 000000012 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:26:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:54.918 -07 000000431 INF: FPGA: Recv ZSGSRD 29762
17-03-17 20:26:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:54.928 -07 000000608 INF: FPGA: Recv ZPIEZORD 25438
17-03-17 20:26:54.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:54.938 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.5 V.
17-03-17 20:26:54.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29761 (-130.7 uncal um), Max = 29768 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:26:54.938 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 4, negNoise = 3
17-03-17 20:26:54.938 -07 000000610 INF: Z Motor: After move to -0.131527, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:54.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:26:54.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:54.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:54.938 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:54.938 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:54.938 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:54.938 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:54.938 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:54.938 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:26:54.938 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:54.938 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:54.938 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:26:54.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:54.938 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:26:54.938 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:54.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:26:54.938 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:54.948 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:26:54.948 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:26:54.958 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:26:54.958 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:26:54.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28908 150\n [Camera]
17-03-17 20:26:55.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:55.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:55.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:55.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:55.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:55.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:26:55.578 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:55.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:55.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:55.688 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:55.688 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:26:55.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28908 799
17-03-17 20:26:55.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:55.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:26:55.978 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:26:55.978 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:55.978 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:55.978 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:26:56.068 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:26:56.068 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:26:56.068 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:56.068 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:56.078 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 20:26:56.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:56.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:56.118 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:56.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:56.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:56.118 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:56.118 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:56.118 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:26:56.118 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:56.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:26:56.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:56.308 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:56.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28908 150' command took 2 ms to send, 1343 ms to get response, and 1347 ms overall
17-03-17 20:26:56.308 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131869
17-03-17 20:26:56.308 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13187 mm
17-03-17 20:26:56.308 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:56.308 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28807, sync = True, waitForSettling = False)
17-03-17 20:26:56.308 -07 000000382 INF: Z Motor: Moving to -0.131870 mm, started at -0.131534 mm, distance = -0.34 um
17-03-17 20:26:56.308 -07 000000382 INF: FPGA: Xmit ZDACW 28807\n [Z Motor]
17-03-17 20:26:56.308 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:26:56.308 -07 000000608 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 20:26:56.318 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:56.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:26:56.498 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:26:56.498 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:56.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:26:56.508 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:26:56.508 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:56.508 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:26:56.508 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:26:56.508 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:26:56.518 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:26:56.518 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:26:56.518 -07 000000618 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:26:56.518 -07 000000382 INF: FPGA: 'ZDACW 28807' command took 0 ms to send, 205 ms to get response, and 206 ms overall
17-03-17 20:26:56.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 195 ms to get response, and 206 ms overall
17-03-17 20:26:56.518 -07 000000608 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:56.518 -07 000000608 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:56.518 -07 000000608 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:26:56.518 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:56.518 -07 000000618 INF: FPGA: Recv ZDACR 28807
17-03-17 20:26:56.528 -07 000000382 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:26:56.528 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:56.528 -07 000000382 INF: Z Motor: MoveAbsStepped took 212 ms (did NOT wait for settling yet))
17-03-17 20:26:56.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:26:56.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:26:56.898 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:26:56.898 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:26:56.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:56.938 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:26:56.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:56.948 -07 000000608 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:56.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:26:56.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.838 mm, average velocity = 2.193 mm/sec
17-03-17 20:26:57.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:57.898 -07 000000478 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:26:57.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:26:57.908 -07 000000608 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:57.928 -07 000000608 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:26:57.928 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:26:57.928 -07 000000608 INF: Y Motor: Moved to 66.5400 after 1615 ms (table move)
17-03-17 20:26:57.928 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131870 mm (DAC = 28807)
17-03-17 20:26:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:26:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:26:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.938 -07 000000608 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:26:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.948 -07 000000478 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:26:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:26:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:26:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.978 -07 000000478 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:26:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.988 -07 000000429 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:26:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:57.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:26:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:26:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:26:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:58.028 -07 000000429 INF: FPGA: Recv ZPIEZORD 25530
17-03-17 20:26:58.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.4 V.
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29817 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29818 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29808 (-131.0 uncal um), Max = 29824 (-131.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29817, posNoise = 7, negNoise = 9
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: After move to -0.131870, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: Settle wait time = 1619 ms, measure time = 103 ms (allowed 150 ms), total time = 1722 ms
17-03-17 20:26:58.038 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:26:58.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1774 ms
17-03-17 20:26:58.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:26:58.088 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.131874085442021. ----------
17-03-17 20:26:58.088 -07 000000610 INF: Cycle	38	Tile	9	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:26:58.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28630, sync = True, waitForSettling = True)
17-03-17 20:26:58.088 -07 000000610 INF: Z Motor: Moving to -0.131060 mm, started at -0.131874 mm, distance = 0.81 um
17-03-17 20:26:58.088 -07 000000610 INF: FPGA: Xmit ZDACW 28630\n [Z Motor]
17-03-17 20:26:58.088 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:26:58.098 -07 000000610 INF: FPGA: 'ZDACW 28630' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:26:58.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:58.098 -07 000000478 INF: FPGA: Recv ZDACR 28630
17-03-17 20:26:58.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:26:58.228 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.020806,
17-03-17 20:26:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.258 -07 000000608 INF: FPGA: Recv ZSGSRD 29685
17-03-17 20:26:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.268 -07 000000547 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:26:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29688
17-03-17 20:26:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:26:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.308 -07 000000547 INF: FPGA: Recv ZSGSRD 29689
17-03-17 20:26:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.318 -07 000000382 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:26:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.328 -07 000000547 INF: FPGA: Recv ZSGSRD 29685
17-03-17 20:26:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:26:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.348 -07 000000547 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:26:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.358 -07 000000608 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:26:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:26:58.368 -07 000000547 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:26:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:26:58.378 -07 000000382 INF: FPGA: Recv ZPIEZORD 25367
17-03-17 20:26:58.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:58.388 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.5 V.
17-03-17 20:26:58.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29691 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29690 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29685 (-130.2 uncal um), Max = 29699 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:26:58.388 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29691, posNoise = 8, negNoise = 6
17-03-17 20:26:58.388 -07 000000610 INF: Z Motor: After move to -0.131060, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:26:58.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 20:26:58.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:26:58.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:26:58.388 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:26:58.388 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:26:58.388 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:26:58.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:26:58.388 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:26:58.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:26:58.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:26:58.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:26:58.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:26:58.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:26:58.398 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:26:58.398 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:26:58.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:26:58.398 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:26:58.408 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:26:58.408 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:26:58.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:26:58.408 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:26:58.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28807 150\n [Camera]
17-03-17 20:26:58.608 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:26:59.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:26:59.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:26:59.028 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:59.028 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:59.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:26:59.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:26:59.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:26:59.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:59.028 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:59.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:26:59.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28807 799
17-03-17 20:26:59.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:26:59.408 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:26:59.408 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:26:59.408 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:59.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:26:59.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:26:59.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:59.408 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:59.408 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:26:59.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:59.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:26:59.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:26:59.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:26:59.568 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:26:59.568 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:26:59.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:26:59.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:26:59.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:26:59.568 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:26:59.568 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:26:59.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:26:59.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:26:59.758 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:26:59.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28807 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-17 20:26:59.758 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131895
17-03-17 20:26:59.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13189 mm
17-03-17 20:26:59.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:26:59.768 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 28812, sync = True, waitForSettling = False)
17-03-17 20:26:59.768 -07 000000415 INF: Z Motor: Moving to -0.131893 mm, started at -0.131065 mm, distance = -0.83 um
17-03-17 20:26:59.768 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:26:59.768 -07 000000429 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 20:26:59.768 -07 000000415 INF: FPGA: Xmit ZDACW 28812\n [Z Motor]
17-03-17 20:26:59.768 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:26:59.778 -07 000000415 INF: FPGA: 'ZDACW 28812' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:26:59.778 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:26:59.778 -07 000000382 INF: FPGA: Recv ZDACR 28812
17-03-17 20:26:59.788 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:26:59.788 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:26:59.788 -07 000000415 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 20:26:59.788 -07 000000608 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:26:59.798 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:26:59.798 -07 000000429 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:26:59.798 -07 000000429 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:26:59.798 -07 000000429 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:26:59.798 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:26:59.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:26:59.948 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:26:59.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:59.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:26:59.958 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:26:59.958 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:26:59.958 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:59.958 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:26:59.958 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:26:59.968 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:27:00.178 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:27:00.178 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-17 20:27:00.208 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:00.218 -07 000000448 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:27:00.218 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:00.218 -07 000000429 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:00.218 -07 000000429 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:27:00.218 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.211 mm/sec
17-03-17 20:27:01.168 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:01.168 -07 000000618 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:27:01.178 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:01.178 -07 000000429 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:01.198 -07 000000429 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:01.198 -07 000000429 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:01.198 -07 000000429 INF: Y Motor: Moved to 67.3730 after 1430 ms (table move)
17-03-17 20:27:01.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131893 mm (DAC = 28812)
17-03-17 20:27:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29831
17-03-17 20:27:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.208 -07 000000429 INF: FPGA: Recv ZSGSRD 29823
17-03-17 20:27:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:27:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.228 -07 000000618 INF: FPGA: Recv ZSGSRD 29817
17-03-17 20:27:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.238 -07 000000448 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:27:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:27:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:27:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:27:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29827
17-03-17 20:27:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.288 -07 000000429 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:27:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:01.298 -07 000000618 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 20:27:01.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.3 V.
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29817 (-131.1 uncal um), Max = 29831 (-131.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 9, negNoise = 5
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: After move to -0.131893, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:27:01.308 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:01.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:27:01.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:01.358 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.13190620650273. ----------
17-03-17 20:27:01.358 -07 000000610 INF: Cycle	38	Tile	10	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:01.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28636, sync = True, waitForSettling = True)
17-03-17 20:27:01.358 -07 000000610 INF: Z Motor: Moving to -0.131087 mm, started at -0.131906 mm, distance = 0.82 um
17-03-17 20:27:01.358 -07 000000610 INF: FPGA: Xmit ZDACW 28636\n [Z Motor]
17-03-17 20:27:01.358 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:27:01.368 -07 000000610 INF: FPGA: 'ZDACW 28636' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:27:01.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:01.368 -07 000000448 INF: FPGA: Recv ZDACR 28636
17-03-17 20:27:01.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.528 -07 000000448 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:27:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.538 -07 000000448 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:27:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.548 -07 000000429 INF: FPGA: Recv ZSGSRD 29690
17-03-17 20:27:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.558 -07 000000501 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:27:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:27:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.578 -07 000000448 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:27:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.588 -07 000000429 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:27:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:27:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.608 -07 000000448 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:27:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:01.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:27:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:01.628 -07 000000448 INF: FPGA: Recv ZPIEZORD 25418
17-03-17 20:27:01.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:01.638 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.4 V.
17-03-17 20:27:01.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29695 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29690 (-130.3 uncal um), Max = 29699 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:27:01.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29695, posNoise = 4, negNoise = 5
17-03-17 20:27:01.638 -07 000000610 INF: Z Motor: After move to -0.131087, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:01.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:27:01.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:01.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:01.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:01.638 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:01.638 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:01.638 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:01.638 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:01.638 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:01.638 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:01.638 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:01.638 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:01.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:01.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:27:01.648 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:01.648 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:01.648 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:01.658 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:27:01.658 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:27:01.658 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:27:01.658 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:27:01.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28812 150\n [Camera]
17-03-17 20:27:01.778 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:01.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:01.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:02.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:02.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:02.278 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:02.278 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:02.278 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:27:02.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:02.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:02.278 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:02.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:02.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:27:02.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28812 799
17-03-17 20:27:02.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:02.648 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:27:02.648 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:27:02.648 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:02.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:27:02.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:27:02.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:02.658 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:02.658 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:27:02.658 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:02.668 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:27:02.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:02.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:02.818 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:02.818 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:02.818 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:27:02.818 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:02.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:02.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:02.818 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:02.818 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:27:03.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:27:03.008 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:03.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28812 150' command took 2 ms to send, 1343 ms to get response, and 1347 ms overall
17-03-17 20:27:03.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:27:03.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131090331560727. ------
17-03-17 20:27:03.008 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:03.008 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13751 mm
17-03-17 20:27:03.008 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:03.018 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:03.018 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:27:03.018 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:27:03.018 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30038, sync = True, waitForSettling = False)
17-03-17 20:27:03.018 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:27:03.018 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 20:27:03.018 -07 000000448 INF: Z Motor: Moving to -0.137505 mm, started at -0.131090 mm, distance = -6.41 um
17-03-17 20:27:03.028 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:03.028 -07 000000618 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:27:03.038 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:27:03.038 -07 000000502 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:03.038 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:03.038 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:27:03.038 -07 000000448 INF: FPGA: Xmit ZDACW 30038\n [Z Motor]
17-03-17 20:27:03.038 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:27:03.048 -07 000000448 INF: FPGA: 'ZDACW 30038' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:27:03.048 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:03.048 -07 000000382 INF: FPGA: Recv ZDACR 30038
17-03-17 20:27:03.058 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:03.058 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:03.058 -07 000000448 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:27:03.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:27:03.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:27:03.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:03.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:27:03.198 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:27:03.198 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:03.198 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:03.208 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:03.208 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:27:03.208 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:27:03.218 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:27:03.218 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:27:03.428 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:27:03.428 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:27:03.468 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:03.468 -07 000000382 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:27:03.478 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:03.478 -07 000000502 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:03.478 -07 000000502 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:27:03.478 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 20:27:03.618 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.026244,
17-03-17 20:27:04.428 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:04.428 -07 000000382 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:27:04.438 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:04.438 -07 000000502 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:04.448 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:04.448 -07 000000502 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:04.448 -07 000000502 INF: Y Motor: Moved to 68.2061 after 1436 ms (table move)
17-03-17 20:27:04.458 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137505 mm (DAC = 30038)
17-03-17 20:27:04.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:27:04.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:27:04.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.468 -07 000000382 INF: FPGA: Recv ZSGSRD 30691
17-03-17 20:27:04.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.478 -07 000000627 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:27:04.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.488 -07 000000012 INF: FPGA: Recv ZSGSRD 30687
17-03-17 20:27:04.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.498 -07 000000429 INF: FPGA: Recv ZSGSRD 30696
17-03-17 20:27:04.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.508 -07 000000618 INF: FPGA: Recv ZSGSRD 30700
17-03-17 20:27:04.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.518 -07 000000431 INF: FPGA: Recv ZSGSRD 30685
17-03-17 20:27:04.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30690
17-03-17 20:27:04.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.538 -07 000000012 INF: FPGA: Recv ZSGSRD 30693
17-03-17 20:27:04.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:04.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30692
17-03-17 20:27:04.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.558 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:04.558 -07 000000012 INF: FPGA: Recv ZPIEZORD 26692
17-03-17 20:27:04.568 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.8 V.
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30693 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30685 (-136.7 uncal um), Max = 30700 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30693, posNoise = 7, negNoise = 8
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: After move to -0.137505, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: Settle wait time = 1439 ms, measure time = 108 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:27:04.568 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:04.618 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:27:04.618 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:04.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:04.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:04.618 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:04.618 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:04.618 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:27:04.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:04.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:04.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:27:04.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:27:04.628 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:27:04.638 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:27:04.638 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:27:04.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:27:04.688 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:27:04.888 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:27:04.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:27:04.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:27:04.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424986384, 0x0, 559484976) start.
17-03-17 20:27:04.928 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:27:04.928 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:27:04.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:27:05.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424986384, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:27:05.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:05.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:27:05.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:27:05.028 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:05.028 -07 000000501 INF: Autofocus start
17-03-17 20:27:05.028 -07 000000501 INF: MeasureProfile start
17-03-17 20:27:05.028 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:05.038 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:05.038 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:27:05.038 -07 000000501 INF: MeasureProfile done
17-03-17 20:27:05.038 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:27:05.038 -07 000000501 INF: Autofocus finished
17-03-17 20:27:05.238 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:27:05.238 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 207 ms overall
17-03-17 20:27:05.248 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137501695278204. ----------
17-03-17 20:27:05.248 -07 000000610 INF: Cycle	38	Tile	11	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:05.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28562, sync = True, waitForSettling = True)
17-03-17 20:27:05.248 -07 000000610 INF: Z Motor: Moving to -0.130748 mm, started at -0.137502 mm, distance = 6.75 um
17-03-17 20:27:05.248 -07 000000610 INF: FPGA: Xmit ZDACW 28562\n [Z Motor]
17-03-17 20:27:05.248 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:27:05.258 -07 000000610 INF: FPGA: 'ZDACW 28562' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:05.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:05.258 -07 000000012 INF: FPGA: Recv ZDACR 28562
17-03-17 20:27:05.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:27:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.428 -07 000000382 INF: FPGA: Recv ZSGSRD 29649
17-03-17 20:27:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29645
17-03-17 20:27:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:27:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.458 -07 000000501 INF: FPGA: Recv ZSGSRD 29650
17-03-17 20:27:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29641
17-03-17 20:27:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:27:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.488 -07 000000382 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:27:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29645
17-03-17 20:27:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:05.508 -07 000000382 INF: FPGA: Recv ZSGSRD 29650
17-03-17 20:27:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:05.518 -07 000000501 INF: FPGA: Recv ZPIEZORD 25333
17-03-17 20:27:05.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:05.528 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V.
17-03-17 20:27:05.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29644 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29640 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:27:05.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29644, posNoise = 6, negNoise = 4
17-03-17 20:27:05.528 -07 000000610 INF: Z Motor: After move to -0.130748, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:05.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:27:05.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:05.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:05.528 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:05.528 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:05.528 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:05.528 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:05.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:05.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:05.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:05.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:05.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:05.528 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:05.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:27:05.528 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:05.538 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:05.538 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:05.538 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:27:05.538 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:27:05.538 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:27:05.538 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:27:05.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28739 150\n [Camera]
17-03-17 20:27:05.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:06.158 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:06.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:06.158 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:06.158 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:06.158 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:27:06.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:06.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:06.168 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:06.168 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:06.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:27:06.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28739 799
17-03-17 20:27:06.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-17 20:27:06.538 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:27:06.538 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:27:06.538 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:06.548 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:27:06.548 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:27:06.548 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:06.548 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:06.548 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:06.548 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:27:06.558 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:27:06.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-17 20:27:06.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-17 20:27:06.708 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:06.708 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:06.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:27:06.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-17 20:27:06.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-17 20:27:06.708 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:06.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:06.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:27:06.778 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:06.898 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:06.898 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:06.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28739 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:27:06.898 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131430
17-03-17 20:27:06.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13143 mm
17-03-17 20:27:06.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:06.898 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:27:06.898 -07 000000547 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 20:27:06.898 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:06.898 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 28711, sync = True, waitForSettling = False)
17-03-17 20:27:06.898 -07 000000429 INF: Z Motor: Moving to -0.131431 mm, started at -0.130763 mm, distance = -0.67 um
17-03-17 20:27:06.908 -07 000000429 INF: FPGA: Xmit ZDACW 28711\n [Z Motor]
17-03-17 20:27:06.908 -07 000000608 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:27:06.908 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:06.908 -07 000000547 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:06.908 -07 000000547 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:06.908 -07 000000547 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:27:06.908 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:27:06.918 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:06.918 -07 000000429 INF: FPGA: 'ZDACW 28711' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:27:06.928 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:06.928 -07 000000608 INF: FPGA: Recv ZDACR 28711
17-03-17 20:27:06.938 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:27:06.938 -07 000000429 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 20:27:07.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:27:07.088 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:27:07.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:07.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:27:07.088 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:27:07.088 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:07.088 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:07.098 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:27:07.098 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:27:07.098 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:27:07.288 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:27:07.288 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:27:07.328 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:07.328 -07 000000608 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:27:07.338 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:07.338 -07 000000547 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:07.338 -07 000000547 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:27:07.338 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.162 mm/sec
17-03-17 20:27:08.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:08.288 -07 000000382 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:27:08.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:08.298 -07 000000547 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:08.318 -07 000000547 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:08.318 -07 000000547 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:27:08.318 -07 000000547 INF: Y Motor: Moved to 69.0283 after 1415 ms (table move)
17-03-17 20:27:08.318 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131431 mm (DAC = 28711)
17-03-17 20:27:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.318 -07 000000415 INF: FPGA: Recv ZSGSRD 29740
17-03-17 20:27:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:08.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.328 -07 000000012 INF: FPGA: Recv ZSGSRD 29752
17-03-17 20:27:08.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.338 -07 000000608 INF: FPGA: Recv ZSGSRD 29744
17-03-17 20:27:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:27:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.358 -07 000000608 INF: FPGA: Recv ZSGSRD 29745
17-03-17 20:27:08.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29752
17-03-17 20:27:08.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.378 -07 000000415 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:27:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.388 -07 000000012 INF: FPGA: Recv ZSGSRD 29747
17-03-17 20:27:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29749
17-03-17 20:27:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29746
17-03-17 20:27:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:08.418 -07 000000429 INF: FPGA: Recv ZPIEZORD 25460
17-03-17 20:27:08.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.4 V.
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29748 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29740 (-130.6 uncal um), Max = 29755 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29748, posNoise = 7, negNoise = 8
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: After move to -0.131431, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 105 ms (allowed 150 ms), total time = 1522 ms
17-03-17 20:27:08.428 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:08.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 20:27:08.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:08.478 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.13143081480424. ----------
17-03-17 20:27:08.478 -07 000000610 INF: Cycle	38	Tile	12	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:08.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28534, sync = True, waitForSettling = True)
17-03-17 20:27:08.478 -07 000000610 INF: Z Motor: Moving to -0.130620 mm, started at -0.131431 mm, distance = 0.81 um
17-03-17 20:27:08.478 -07 000000610 INF: FPGA: Xmit ZDACW 28534\n [Z Motor]
17-03-17 20:27:08.478 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:27:08.488 -07 000000610 INF: FPGA: 'ZDACW 28534' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:08.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:08.488 -07 000000478 INF: FPGA: Recv ZDACR 28534
17-03-17 20:27:08.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.648 -07 000000415 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:27:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.668 -07 000000478 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:27:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:27:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:27:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:27:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.698 -07 000000382 INF: FPGA: Recv ZSGSRD 29625
17-03-17 20:27:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.708 -07 000000012 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:27:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.718 -07 000000415 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:27:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.728 -07 000000012 INF: FPGA: Recv ZSGSRD 29622
17-03-17 20:27:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29623
17-03-17 20:27:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:08.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29623
17-03-17 20:27:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:08.758 -07 000000415 INF: FPGA: Recv ZPIEZORD 25366
17-03-17 20:27:08.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:08.768 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 20:27:08.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29619 (-129.8 uncal um), Max = 29626 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:27:08.768 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 3, negNoise = 4
17-03-17 20:27:08.768 -07 000000610 INF: Z Motor: After move to -0.130620, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:08.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 20:27:08.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:08.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:08.768 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:08.768 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:08.768 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:08.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:08.768 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:08.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:08.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:08.768 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:08.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:08.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:08.778 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:27:08.778 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:08.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:08.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:08.788 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:27:08.788 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:27:08.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:27:08.788 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:27:08.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28711 150\n [Camera]
17-03-17 20:27:08.978 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.011254,
17-03-17 20:27:08.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:09.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:09.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:09.408 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:09.408 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:09.408 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:27:09.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:09.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:09.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:09.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:09.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:27:09.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 799
17-03-17 20:27:09.748 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:09.778 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:27:09.778 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:27:09.778 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:09.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:27:09.778 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:27:09.778 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:09.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:09.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:09.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:27:09.798 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:27:09.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:09.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:09.948 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:09.948 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:09.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:27:09.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:09.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:09.948 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:09.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:09.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:27:10.138 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:27:10.138 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:10.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28711 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-17 20:27:10.138 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.131139
17-03-17 20:27:10.138 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13114 mm
17-03-17 20:27:10.138 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:10.138 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:27:10.138 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 20:27:10.138 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:10.138 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28647, sync = True, waitForSettling = False)
17-03-17 20:27:10.138 -07 000000501 INF: Z Motor: Moving to -0.131138 mm, started at -0.130628 mm, distance = -0.51 um
17-03-17 20:27:10.138 -07 000000448 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:27:10.148 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:10.148 -07 000000618 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:10.148 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:10.148 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:27:10.148 -07 000000501 INF: FPGA: Xmit ZDACW 28647\n [Z Motor]
17-03-17 20:27:10.148 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:27:10.158 -07 000000501 INF: FPGA: 'ZDACW 28647' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:27:10.158 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:10.158 -07 000000431 INF: FPGA: Recv ZDACR 28647
17-03-17 20:27:10.168 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:10.168 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:10.168 -07 000000501 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 20:27:10.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:27:10.328 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:27:10.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:10.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:27:10.328 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:27:10.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:10.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:10.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:27:10.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:10.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:27:10.538 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:27:10.538 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:27:10.578 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:10.578 -07 000000429 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:27:10.588 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:27:10.588 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:10.588 -07 000000618 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:27:10.588 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 20:27:11.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:11.538 -07 000000382 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:27:11.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:11.548 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:11.568 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:11.568 -07 000000618 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:11.568 -07 000000618 INF: Y Motor: Moved to 69.8643 after 1426 ms (table move)
17-03-17 20:27:11.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131138 mm (DAC = 28647)
17-03-17 20:27:11.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.568 -07 000000478 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:27:11.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:27:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29706
17-03-17 20:27:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.588 -07 000000502 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:27:11.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.598 -07 000000547 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:27:11.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.608 -07 000000429 INF: FPGA: Recv ZSGSRD 29706
17-03-17 20:27:11.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.618 -07 000000551 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:27:11.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:27:11.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.638 -07 000000547 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:27:11.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.648 -07 000000431 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:27:11.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:27:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:11.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:11.668 -07 000000502 INF: FPGA: Recv ZPIEZORD 25443
17-03-17 20:27:11.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.4 V.
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29703 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29704 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29698 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29703, posNoise = 3, negNoise = 5
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: After move to -0.131138, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 106 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:27:11.678 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:11.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:27:11.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:11.728 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.131141725257861. ----------
17-03-17 20:27:11.728 -07 000000610 INF: Cycle	38	Tile	13	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:11.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28471, sync = True, waitForSettling = True)
17-03-17 20:27:11.728 -07 000000610 INF: Z Motor: Moving to -0.130332 mm, started at -0.131142 mm, distance = 0.81 um
17-03-17 20:27:11.728 -07 000000610 INF: FPGA: Xmit ZDACW 28471\n [Z Motor]
17-03-17 20:27:11.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:27:11.738 -07 000000610 INF: FPGA: 'ZDACW 28471' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:11.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:11.738 -07 000000012 INF: FPGA: Recv ZDACR 28471
17-03-17 20:27:11.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:11.778 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:11.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.898 -07 000000502 INF: FPGA: Recv ZSGSRD 29582
17-03-17 20:27:11.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:11.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.908 -07 000000547 INF: FPGA: Recv ZSGSRD 29579
17-03-17 20:27:11.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.918 -07 000000429 INF: FPGA: Recv ZSGSRD 29582
17-03-17 20:27:11.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.928 -07 000000501 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:27:11.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.938 -07 000000448 INF: FPGA: Recv ZSGSRD 29574
17-03-17 20:27:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29577
17-03-17 20:27:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:27:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29574
17-03-17 20:27:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.968 -07 000000478 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:27:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.978 -07 000000429 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:27:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:11.988 -07 000000627 INF: FPGA: Recv ZSGSRD 29574
17-03-17 20:27:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:11.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:11.998 -07 000000012 INF: FPGA: Recv ZPIEZORD 25271
17-03-17 20:27:12.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:12.008 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.5 V.
17-03-17 20:27:12.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29577 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29578 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29574 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:27:12.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29577, posNoise = 5, negNoise = 3
17-03-17 20:27:12.008 -07 000000610 INF: Z Motor: After move to -0.130332, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:12.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:27:12.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:12.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:12.008 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:12.008 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:12.008 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:12.008 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:12.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:12.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:12.008 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:12.008 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:12.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:12.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:12.018 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:12.018 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:12.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:27:12.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:12.028 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:27:12.028 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:12.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:27:12.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:12.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28647 150\n [Camera]
17-03-17 20:27:12.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:12.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:12.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:12.648 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:12.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:12.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:27:12.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:12.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:12.648 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:12.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:12.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:27:12.838 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28647 799
17-03-17 20:27:12.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:27:13.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:27:13.028 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:27:13.028 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:13.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:27:13.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:27:13.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:13.028 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:13.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:13.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:27:13.038 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:27:13.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:13.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:13.188 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:13.188 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:13.188 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:27:13.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:13.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:13.198 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:13.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:13.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:27:13.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:27:13.378 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:13.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28647 150' command took 2 ms to send, 1338 ms to get response, and 1347 ms overall
17-03-17 20:27:13.388 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130646
17-03-17 20:27:13.388 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13065 mm
17-03-17 20:27:13.388 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:13.388 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:27:13.388 -07 000000429 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 20:27:13.388 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:13.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:27:13.578 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:27:13.578 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:13.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:27:13.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:27:13.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:13.578 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:13.578 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:27:13.578 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:13.588 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:27:13.588 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28540, sync = True, waitForSettling = False)
17-03-17 20:27:13.588 -07 000000012 INF: Z Motor: Moving to -0.130648 mm, started at -0.130332 mm, distance = -0.32 um
17-03-17 20:27:13.588 -07 000000012 INF: FPGA: Xmit ZDACW 28540\n [Z Motor]
17-03-17 20:27:13.598 -07 000000431 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:27:13.598 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:27:13.598 -07 000000012 INF: FPGA: 'ZDACW 28540' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:27:13.598 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:13.598 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 202 ms to get response, and 207 ms overall
17-03-17 20:27:13.598 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:13.598 -07 000000429 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:13.598 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:27:13.598 -07 000000431 INF: FPGA: Recv ZDACR 28540
17-03-17 20:27:13.608 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:13.608 -07 000000012 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 20:27:13.608 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:13.978 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:27:13.978 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:27:14.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:14.018 -07 000000431 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:27:14.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:14.028 -07 000000429 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:14.028 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:27:14.028 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.183 mm/sec
17-03-17 20:27:14.348 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.014009,
17-03-17 20:27:14.978 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:14.978 -07 000000501 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:27:14.988 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:14.988 -07 000000429 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:15.008 -07 000000429 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:15.008 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:15.008 -07 000000429 INF: Y Motor: Moved to 70.6895 after 1618 ms (table move)
17-03-17 20:27:15.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130648 mm (DAC = 28540)
17-03-17 20:27:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29623
17-03-17 20:27:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.018 -07 000000551 INF: FPGA: Recv ZSGSRD 29624
17-03-17 20:27:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.028 -07 000000431 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:27:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.038 -07 000000429 INF: FPGA: Recv ZSGSRD 29628
17-03-17 20:27:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.048 -07 000000431 INF: FPGA: Recv ZSGSRD 29634
17-03-17 20:27:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.058 -07 000000501 INF: FPGA: Recv ZSGSRD 29630
17-03-17 20:27:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:27:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:27:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:27:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.098 -07 000000502 INF: FPGA: Recv ZSGSRD 29621
17-03-17 20:27:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:15.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 25362
17-03-17 20:27:15.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.4 V.
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29627 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29621 (-129.8 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 7, negNoise = 6
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: After move to -0.130648, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 105 ms (allowed 150 ms), total time = 1523 ms
17-03-17 20:27:15.118 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:15.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1776 ms
17-03-17 20:27:15.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:15.168 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.130653485135087. ----------
17-03-17 20:27:15.168 -07 000000610 INF: Cycle	38	Tile	14	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:15.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28363, sync = True, waitForSettling = True)
17-03-17 20:27:15.168 -07 000000610 INF: Z Motor: Moving to -0.129837 mm, started at -0.130653 mm, distance = 0.82 um
17-03-17 20:27:15.168 -07 000000610 INF: FPGA: Xmit ZDACW 28363\n [Z Motor]
17-03-17 20:27:15.168 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:27:15.178 -07 000000610 INF: FPGA: 'ZDACW 28363' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:15.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:15.178 -07 000000429 INF: FPGA: Recv ZDACR 28363
17-03-17 20:27:15.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:27:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.348 -07 000000627 INF: FPGA: Recv ZSGSRD 29504
17-03-17 20:27:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.358 -07 000000429 INF: FPGA: Recv ZSGSRD 29506
17-03-17 20:27:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.368 -07 000000551 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:27:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.378 -07 000000501 INF: FPGA: Recv ZSGSRD 29495
17-03-17 20:27:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29505
17-03-17 20:27:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.398 -07 000000429 INF: FPGA: Recv ZSGSRD 29508
17-03-17 20:27:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29490
17-03-17 20:27:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29502
17-03-17 20:27:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:15.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29506
17-03-17 20:27:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:15.438 -07 000000429 INF: FPGA: Recv ZPIEZORD 25204
17-03-17 20:27:15.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:15.448 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.328 V. Piezo Error = -9.4 V.
17-03-17 20:27:15.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29501 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29503 (-129.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29508 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:27:15.448 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29501, posNoise = 7, negNoise = 11
17-03-17 20:27:15.448 -07 000000610 INF: Z Motor: After move to -0.129837, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:15.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:27:15.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:15.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:15.448 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:15.448 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:15.448 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:15.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:15.448 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:15.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:15.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:15.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:15.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:15.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:15.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:27:15.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:15.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:27:15.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:15.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:27:15.468 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:27:15.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:27:15.468 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:15.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28540 150\n [Camera]
17-03-17 20:27:15.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:16.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:16.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:16.088 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:16.088 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:16.088 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 20:27:16.088 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:16.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:16.088 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:16.088 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:16.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 20:27:16.278 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28540 799
17-03-17 20:27:16.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:16.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:27:16.488 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:27:16.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:16.488 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:27:16.488 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:27:16.488 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:16.488 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:16.488 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:27:16.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:16.498 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:27:16.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:16.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:16.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:16.628 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:16.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:16.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:16.638 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:16.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:27:16.638 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:16.638 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:27:17.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:27:17.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:27:17.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:17.018 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:27:17.018 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:27:17.018 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:17.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:17.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:27:17.018 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:17.028 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:27:17.048 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:17.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:17.048 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:17.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28540 150' command took 2 ms to send, 1561 ms to get response, and 1572 ms overall
17-03-17 20:27:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:17.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:27:17.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129844034405225. ------
17-03-17 20:27:17.058 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13648 mm
17-03-17 20:27:17.058 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:17.058 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:17.738 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:27:17.738 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 20:27:17.738 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:18.738 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:18.738 -07 000000608 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:27:18.738 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1670 ms to get response, and 1680 ms overall
17-03-17 20:27:18.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-17 20:27:18.738 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:18.738 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:18.738 -07 000000415 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:27:18.738 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:27:18.738 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29815, sync = True, waitForSettling = False)
17-03-17 20:27:18.738 -07 000000608 INF: Z Motor: Moving to -0.136484 mm, started at -0.129844 mm, distance = -6.64 um
17-03-17 20:27:18.748 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:18.758 -07 000000608 INF: FPGA: Xmit ZDACW 29815\n [Z Motor]
17-03-17 20:27:19.738 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:27:19.738 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:27:19.738 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:27:19.738 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 989 ms to get response, and 1007 ms overall
17-03-17 20:27:19.738 -07 000000608 INF: FPGA: 'ZDACW 29815' command took 0 ms to send, 976 ms to get response, and 1004 ms overall
17-03-17 20:27:19.738 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:19.748 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 999 ms to get response, and 1008 ms overall
17-03-17 20:27:19.748 -07 000000448 INF: FPGA: Recv ZDACR 29815
17-03-17 20:27:19.758 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:19.758 -07 000000608 INF: Z Motor: MoveAbsStepped took 1017 ms (did NOT wait for settling yet))
17-03-17 20:27:19.788 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:19.788 -07 000000608 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:27:19.798 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:19.798 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:19.798 -07 000000415 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:27:19.798 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1007 ms, distance = 0.843 mm, average velocity = 0.837 mm/sec
17-03-17 20:27:20.368 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 3.999021,
17-03-17 20:27:20.748 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:20.748 -07 000000608 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:27:20.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:20.758 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:20.778 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:20.778 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:20.778 -07 000000415 INF: Y Motor: Moved to 71.5200 after 3041 ms (table move)
17-03-17 20:27:20.778 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136484 mm (DAC = 29815)
17-03-17 20:27:20.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.788 -07 000000608 INF: FPGA: Recv ZSGSRD 30541
17-03-17 20:27:20.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:27:20.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.788 -07 000000415 INF: FPGA: Recv ZSGSRD 30538
17-03-17 20:27:20.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.798 -07 000000627 INF: FPGA: Recv ZSGSRD 30527
17-03-17 20:27:20.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.808 -07 000000012 INF: FPGA: Recv ZSGSRD 30536
17-03-17 20:27:20.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30540
17-03-17 20:27:20.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.828 -07 000000415 INF: FPGA: Recv ZSGSRD 30537
17-03-17 20:27:20.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.838 -07 000000608 INF: FPGA: Recv ZSGSRD 30535
17-03-17 20:27:20.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.848 -07 000000429 INF: FPGA: Recv ZSGSRD 30533
17-03-17 20:27:20.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.858 -07 000000627 INF: FPGA: Recv ZSGSRD 30536
17-03-17 20:27:20.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:20.868 -07 000000547 INF: FPGA: Recv ZSGSRD 30539
17-03-17 20:27:20.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.878 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:20.878 -07 000000448 INF: FPGA: Recv ZPIEZORD 26598
17-03-17 20:27:20.888 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -8.7 V.
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30536 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30536 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30527 (-135.6 uncal um), Max = 30541 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30536, posNoise = 5, negNoise = 9
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: After move to -0.136484, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: Settle wait time = 2045 ms, measure time = 103 ms (allowed 150 ms), total time = 2148 ms
17-03-17 20:27:20.888 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:20.938 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3880 ms
17-03-17 20:27:20.938 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:20.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:20.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:20.938 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:20.938 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:20.938 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:27:20.938 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:20.938 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:20.938 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:27:20.948 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:20.948 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:27:20.958 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:27:20.958 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:27:20.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:27:21.008 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:27:21.198 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:27:21.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:27:21.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:27:21.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:27:21.238 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:27:21.248 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:27:21.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:27:21.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:27:21.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:21.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:27:21.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:27:21.348 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:21.348 -07 000000608 INF: Autofocus start
17-03-17 20:27:21.348 -07 000000608 INF: MeasureProfile start
17-03-17 20:27:21.348 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:21.358 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:21.358 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:27:21.358 -07 000000608 INF: MeasureProfile done
17-03-17 20:27:21.358 -07 000000608 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 20:27:21.358 -07 000000608 INF: Autofocus finished
17-03-17 20:27:21.558 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:27:21.558 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:27:21.558 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136493093971948. ----------
17-03-17 20:27:21.558 -07 000000610 INF: Cycle	38	Tile	15	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:21.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28292, sync = True, waitForSettling = True)
17-03-17 20:27:21.568 -07 000000610 INF: Z Motor: Moving to -0.129512 mm, started at -0.136493 mm, distance = 6.98 um
17-03-17 20:27:21.568 -07 000000610 INF: FPGA: Xmit ZDACW 28292\n [Z Motor]
17-03-17 20:27:21.568 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:27:21.578 -07 000000610 INF: FPGA: 'ZDACW 28292' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:27:21.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:21.578 -07 000000429 INF: FPGA: Recv ZDACR 28292
17-03-17 20:27:21.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:21.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.738 -07 000000431 INF: FPGA: Recv ZSGSRD 29448
17-03-17 20:27:21.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:21.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.748 -07 000000608 INF: FPGA: Recv ZSGSRD 29451
17-03-17 20:27:21.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29453
17-03-17 20:27:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.768 -07 000000382 INF: FPGA: Recv ZSGSRD 29448
17-03-17 20:27:21.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29449
17-03-17 20:27:21.778 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:21.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29457
17-03-17 20:27:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29452
17-03-17 20:27:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29448
17-03-17 20:27:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29450
17-03-17 20:27:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:21.828 -07 000000608 INF: FPGA: Recv ZSGSRD 29451
17-03-17 20:27:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:21.838 -07 000000448 INF: FPGA: Recv ZPIEZORD 25140
17-03-17 20:27:21.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:21.848 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.5 V.
17-03-17 20:27:21.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29451 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:27:21.848 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29451, posNoise = 6, negNoise = 3
17-03-17 20:27:21.848 -07 000000610 INF: Z Motor: After move to -0.129512, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:21.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:27:21.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:21.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:21.848 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:21.848 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:21.848 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:21.848 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:21.848 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:21.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:21.848 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:21.848 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:21.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:21.848 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:21.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:27:21.858 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:21.858 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:21.858 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:21.868 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:27:21.868 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:27:21.868 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:27:21.868 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:27:21.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28469 150\n [Camera]
17-03-17 20:27:22.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:22.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:22.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:22.488 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:22.488 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:22.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:27:22.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:22.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:22.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:22.608 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:22.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:27:22.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28469 799
17-03-17 20:27:22.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:22.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:27:22.888 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:27:22.888 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:22.888 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:22.888 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:27:22.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:27:22.998 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:27:22.998 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:22.998 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:27:23.008 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 20:27:23.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:23.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:23.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:23.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:23.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:23.038 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:23.038 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:23.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:27:23.038 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:23.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:27:23.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:23.218 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:23.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28469 150' command took 2 ms to send, 1338 ms to get response, and 1347 ms overall
17-03-17 20:27:23.228 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129348
17-03-17 20:27:23.228 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12935 mm
17-03-17 20:27:23.228 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:23.228 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:27:23.228 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 28256, sync = True, waitForSettling = False)
17-03-17 20:27:23.228 -07 000000448 INF: Z Motor: Moving to -0.129348 mm, started at -0.129523 mm, distance = 0.18 um
17-03-17 20:27:23.228 -07 000000448 INF: FPGA: Xmit ZDACW 28256\n [Z Motor]
17-03-17 20:27:23.228 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 20:27:23.228 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:27:23.238 -07 000000448 INF: FPGA: 'ZDACW 28256' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:23.238 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:23.238 -07 000000429 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:27:23.248 -07 000000012 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:27:23.248 -07 000000012 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:23.248 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:23.248 -07 000000012 INF: Y Motor: Moving 1348 steps-26
17-03-17 20:27:23.248 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:23.248 -07 000000415 INF: FPGA: Recv ZDACR 28256
17-03-17 20:27:23.258 -07 000000448 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:27:23.258 -07 000000448 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 20:27:23.258 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:23.408 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:27:23.408 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:27:23.408 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:23.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:27:23.418 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:27:23.418 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:23.418 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:23.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:23.418 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:27:23.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:27:23.628 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:27:23.628 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 20:27:23.668 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:23.678 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:27:23.678 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:23.678 -07 000000012 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:23.678 -07 000000012 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:27:23.678 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.843 mm, average velocity = 2.189 mm/sec
17-03-17 20:27:24.628 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:24.628 -07 000000415 INF: FPGA: Recv YRDPOS 148174
17-03-17 20:27:24.638 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.638 -07 000000012 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:24.658 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:24.658 -07 000000012 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:27:24.658 -07 000000012 INF: Y Motor: Moved to 72.3506 after 1430 ms (table move)
17-03-17 20:27:24.658 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129348 mm (DAC = 28256)
17-03-17 20:27:24.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29426
17-03-17 20:27:24.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.668 -07 000000547 INF: FPGA: Recv ZSGSRD 29428
17-03-17 20:27:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29425
17-03-17 20:27:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.688 -07 000000415 INF: FPGA: Recv ZSGSRD 29430
17-03-17 20:27:24.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.698 -07 000000382 INF: FPGA: Recv ZSGSRD 29427
17-03-17 20:27:24.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29430
17-03-17 20:27:24.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.718 -07 000000547 INF: FPGA: Recv ZSGSRD 29425
17-03-17 20:27:24.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29416
17-03-17 20:27:24.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.738 -07 000000547 INF: FPGA: Recv ZSGSRD 29426
17-03-17 20:27:24.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29426
17-03-17 20:27:24.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:24.758 -07 000000547 INF: FPGA: Recv ZPIEZORD 25145
17-03-17 20:27:24.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.4 V.
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29426 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29416 (-128.5 uncal um), Max = 29430 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29426, posNoise = 4, negNoise = 10
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: After move to -0.129348, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 103 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:27:24.768 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:24.818 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:27:24.818 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:24.818 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.129362218494593. ----------
17-03-17 20:27:24.818 -07 000000610 INF: Cycle	38	Tile	16	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:24.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28079, sync = True, waitForSettling = True)
17-03-17 20:27:24.818 -07 000000610 INF: Z Motor: Moving to -0.128537 mm, started at -0.129362 mm, distance = 0.82 um
17-03-17 20:27:24.818 -07 000000610 INF: FPGA: Xmit ZDACW 28079\n [Z Motor]
17-03-17 20:27:24.818 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:27:24.828 -07 000000610 INF: FPGA: 'ZDACW 28079' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:24.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:24.828 -07 000000547 INF: FPGA: Recv ZDACR 28079
17-03-17 20:27:24.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:24.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.988 -07 000000502 INF: FPGA: Recv ZSGSRD 29304
17-03-17 20:27:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:24.998 -07 000000547 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:27:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.008 -07 000000502 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:27:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.018 -07 000000415 INF: FPGA: Recv ZSGSRD 29305
17-03-17 20:27:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.028 -07 000000382 INF: FPGA: Recv ZSGSRD 29299
17-03-17 20:27:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.038 -07 000000382 INF: FPGA: Recv ZSGSRD 29296
17-03-17 20:27:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.048 -07 000000382 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:27:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.058 -07 000000502 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:27:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:27:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:25.078 -07 000000502 INF: FPGA: Recv ZSGSRD 29302
17-03-17 20:27:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:25.088 -07 000000547 INF: FPGA: Recv ZPIEZORD 24967
17-03-17 20:27:25.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:25.098 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 20:27:25.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29298 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29297 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29291 (-127.7 uncal um), Max = 29305 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:27:25.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29298, posNoise = 7, negNoise = 7
17-03-17 20:27:25.098 -07 000000610 INF: Z Motor: After move to -0.128537, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:25.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:27:25.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:25.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:25.098 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:25.098 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:25.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:25.098 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:25.098 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:25.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:25.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:25.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:25.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:25.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:25.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:27:25.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:25.108 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:25.108 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:25.118 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:27:25.118 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:27:25.118 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:27:25.118 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:25.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28256 150\n [Camera]
17-03-17 20:27:25.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:25.738 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.005817,
17-03-17 20:27:25.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:25.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:25.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:25.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:27:25.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:25.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:25.738 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:25.738 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:25.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:27:25.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28256 799
17-03-17 20:27:26.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:26.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:27:26.138 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:27:26.138 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:26.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:27:26.138 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:27:26.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:26.138 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:26.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:27:26.148 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:26.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:27:26.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:26.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:26.278 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:26.278 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:26.278 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:27:26.278 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:26.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:26.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:26.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:26.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:27:26.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:26.468 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:26.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28256 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-17 20:27:26.468 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129074
17-03-17 20:27:26.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12907 mm
17-03-17 20:27:26.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:26.478 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:27:26.478 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 20:27:26.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:26.478 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28196, sync = True, waitForSettling = False)
17-03-17 20:27:26.478 -07 000000501 INF: Z Motor: Moving to -0.129073 mm, started at -0.128540 mm, distance = -0.53 um
17-03-17 20:27:26.478 -07 000000382 INF: FPGA: Recv YRDPOS 148174
17-03-17 20:27:26.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:27:26.488 -07 000000547 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:26.488 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:26.488 -07 000000547 INF: Y Motor: Moving 1347 steps-26
17-03-17 20:27:26.488 -07 000000501 INF: FPGA: Xmit ZDACW 28196\n [Z Motor]
17-03-17 20:27:26.488 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:27:26.498 -07 000000501 INF: FPGA: 'ZDACW 28196' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:27:26.498 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:26.508 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:26.508 -07 000000551 INF: FPGA: Recv ZDACR 28196
17-03-17 20:27:26.518 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:27:26.518 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:27:26.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:27:26.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:27:26.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:26.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:27:26.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:27:26.688 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:26.688 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:26.688 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:27:26.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:26.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:27:26.818 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:26.868 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:27:26.868 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 20:27:26.908 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:26.908 -07 000000478 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:27:26.918 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:27:26.918 -07 000000547 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:26.918 -07 000000547 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:27:26.918 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.842 mm, average velocity = 2.170 mm/sec
17-03-17 20:27:27.868 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:27.868 -07 000000618 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:27:27.878 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:27.878 -07 000000547 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:27.898 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:27.898 -07 000000547 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:27.898 -07 000000547 INF: Y Motor: Moved to 73.1768 after 1422 ms (table move)
17-03-17 20:27:27.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129073 mm (DAC = 28196)
17-03-17 20:27:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.898 -07 000000448 INF: FPGA: Recv ZSGSRD 29380
17-03-17 20:27:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.908 -07 000000382 INF: FPGA: Recv ZSGSRD 29381
17-03-17 20:27:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.918 -07 000000448 INF: FPGA: Recv ZSGSRD 29373
17-03-17 20:27:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.928 -07 000000012 INF: FPGA: Recv ZSGSRD 29381
17-03-17 20:27:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.938 -07 000000448 INF: FPGA: Recv ZSGSRD 29387
17-03-17 20:27:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29387
17-03-17 20:27:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29389
17-03-17 20:27:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29383
17-03-17 20:27:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.978 -07 000000382 INF: FPGA: Recv ZSGSRD 29381
17-03-17 20:27:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:27.988 -07 000000501 INF: FPGA: Recv ZSGSRD 29377
17-03-17 20:27:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:27.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:27.998 -07 000000012 INF: FPGA: Recv ZPIEZORD 25134
17-03-17 20:27:28.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.3 V.
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29382 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29381 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29373 (-128.2 uncal um), Max = 29389 (-128.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29382, posNoise = 7, negNoise = 9
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: After move to -0.129073, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 106 ms (allowed 150 ms), total time = 1530 ms
17-03-17 20:27:28.008 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:28.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:27:28.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:28.058 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129079553160355. ----------
17-03-17 20:27:28.058 -07 000000610 INF: Cycle	38	Tile	17	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:28.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28019, sync = True, waitForSettling = True)
17-03-17 20:27:28.058 -07 000000610 INF: Z Motor: Moving to -0.128263 mm, started at -0.129080 mm, distance = 0.82 um
17-03-17 20:27:28.058 -07 000000610 INF: FPGA: Xmit ZDACW 28019\n [Z Motor]
17-03-17 20:27:28.058 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:27:28.068 -07 000000610 INF: FPGA: 'ZDACW 28019' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:27:28.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:28.068 -07 000000415 INF: FPGA: Recv ZDACR 28019
17-03-17 20:27:28.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29255
17-03-17 20:27:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.238 -07 000000608 INF: FPGA: Recv ZSGSRD 29253
17-03-17 20:27:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29253
17-03-17 20:27:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29257
17-03-17 20:27:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.268 -07 000000012 INF: FPGA: Recv ZSGSRD 29259
17-03-17 20:27:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.278 -07 000000608 INF: FPGA: Recv ZSGSRD 29261
17-03-17 20:27:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.288 -07 000000012 INF: FPGA: Recv ZSGSRD 29255
17-03-17 20:27:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29258
17-03-17 20:27:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.308 -07 000000012 INF: FPGA: Recv ZSGSRD 29256
17-03-17 20:27:28.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:28.318 -07 000000382 INF: FPGA: Recv ZSGSRD 29250
17-03-17 20:27:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:28.328 -07 000000382 INF: FPGA: Recv ZPIEZORD 24938
17-03-17 20:27:28.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:28.338 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.275 V. Piezo Error = -9.5 V.
17-03-17 20:27:28.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29256 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29256 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29250 (-127.5 uncal um), Max = 29261 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:27:28.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29256, posNoise = 5, negNoise = 6
17-03-17 20:27:28.338 -07 000000610 INF: Z Motor: After move to -0.128263, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:28.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:27:28.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:28.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:28.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:28.338 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:28.338 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:28.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:28.338 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:28.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:28.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:28.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:28.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:28.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:28.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:27:28.348 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:28.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:28.348 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:28.358 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:27:28.358 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:28.358 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:27:28.358 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:27:28.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28196 150\n [Camera]
17-03-17 20:27:28.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:28.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:28.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:28.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:28.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:28.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:28.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:28.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:28.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:27:28.988 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:28.988 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:27:29.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28196 799
17-03-17 20:27:29.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:29.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:27:29.358 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:27:29.358 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:29.358 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:27:29.358 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:27:29.358 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:29.368 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:29.368 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:29.368 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:27:29.368 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:27:29.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:29.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:29.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:29.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:29.528 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:29.528 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:29.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:27:29.528 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:29.528 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:29.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:27:29.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:29.708 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:29.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28196 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-17 20:27:29.708 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128663
17-03-17 20:27:29.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12866 mm
17-03-17 20:27:29.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:29.718 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:27:29.718 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 20:27:29.718 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:29.718 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 28106, sync = True, waitForSettling = False)
17-03-17 20:27:29.718 -07 000000448 INF: Z Motor: Moving to -0.128661 mm, started at -0.128270 mm, distance = -0.39 um
17-03-17 20:27:29.828 -07 000000448 INF: FPGA: Xmit ZDACW 28106\n [Z Motor]
17-03-17 20:27:29.828 -07 000000382 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:27:29.828 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 20:27:29.828 -07 000000618 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:29.828 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:29.828 -07 000000618 INF: Y Motor: Moving 1353 steps-32
17-03-17 20:27:29.828 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:27:29.838 -07 000000448 INF: FPGA: 'ZDACW 28106' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 20:27:29.838 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:29.838 -07 000000382 INF: FPGA: Recv ZDACR 28106
17-03-17 20:27:29.848 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:29.848 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:29.848 -07 000000448 INF: Z Motor: MoveAbsStepped took 127 ms (did NOT wait for settling yet))
17-03-17 20:27:29.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:27:29.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:27:29.908 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:29.908 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:27:29.908 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:27:29.908 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:29.918 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:29.918 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:29.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:27:29.928 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:27:30.218 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:27:30.218 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:27:30.248 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:30.258 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:27:30.258 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:27:30.258 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:30.258 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:27:30.258 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.158 mm/sec
17-03-17 20:27:31.108 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.023489,
17-03-17 20:27:31.208 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:31.208 -07 000000448 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:27:31.218 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:31.218 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:31.228 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:31.228 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:27:31.228 -07 000000618 INF: Y Motor: Moved to 74.0088 after 1514 ms (table move)
17-03-17 20:27:31.238 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128661 mm (DAC = 28106)
17-03-17 20:27:31.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.238 -07 000000448 INF: FPGA: Recv ZSGSRD 29319
17-03-17 20:27:31.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29314
17-03-17 20:27:31.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:31.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.258 -07 000000429 INF: FPGA: Recv ZSGSRD 29322
17-03-17 20:27:31.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:27:31.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:27:31.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29323
17-03-17 20:27:31.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29315
17-03-17 20:27:31.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.308 -07 000000618 INF: FPGA: Recv ZSGSRD 29314
17-03-17 20:27:31.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.318 -07 000000429 INF: FPGA: Recv ZSGSRD 29315
17-03-17 20:27:31.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29316
17-03-17 20:27:31.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:31.338 -07 000000618 INF: FPGA: Recv ZPIEZORD 25054
17-03-17 20:27:31.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.4 V.
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29317 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29316 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29314 (-127.9 uncal um), Max = 29323 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29317, posNoise = 6, negNoise = 3
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: After move to -0.128661, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: Settle wait time = 1516 ms, measure time = 111 ms (allowed 150 ms), total time = 1627 ms
17-03-17 20:27:31.348 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:31.388 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1669 ms
17-03-17 20:27:31.388 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:31.388 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128661979371141. ----------
17-03-17 20:27:31.388 -07 000000610 INF: Cycle	38	Tile	18	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:31.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27930, sync = True, waitForSettling = True)
17-03-17 20:27:31.388 -07 000000610 INF: Z Motor: Moving to -0.127855 mm, started at -0.128662 mm, distance = 0.81 um
17-03-17 20:27:31.388 -07 000000610 INF: FPGA: Xmit ZDACW 27930\n [Z Motor]
17-03-17 20:27:31.388 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:27:31.398 -07 000000610 INF: FPGA: 'ZDACW 27930' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:27:31.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:31.398 -07 000000431 INF: FPGA: Recv ZDACR 27930
17-03-17 20:27:31.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.558 -07 000000415 INF: FPGA: Recv ZSGSRD 29188
17-03-17 20:27:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.568 -07 000000448 INF: FPGA: Recv ZSGSRD 29197
17-03-17 20:27:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29192
17-03-17 20:27:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29192
17-03-17 20:27:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29187
17-03-17 20:27:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.608 -07 000000431 INF: FPGA: Recv ZSGSRD 29189
17-03-17 20:27:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.618 -07 000000618 INF: FPGA: Recv ZSGSRD 29193
17-03-17 20:27:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29186
17-03-17 20:27:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29192
17-03-17 20:27:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:31.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29195
17-03-17 20:27:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:31.658 -07 000000012 INF: FPGA: Recv ZPIEZORD 24881
17-03-17 20:27:31.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:31.668 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.5 V.
17-03-17 20:27:31.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29191 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29192 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29186 (-127.0 uncal um), Max = 29197 (-127.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:27:31.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29191, posNoise = 6, negNoise = 5
17-03-17 20:27:31.668 -07 000000610 INF: Z Motor: After move to -0.127855, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:31.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:27:31.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:31.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:31.668 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:31.668 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:31.668 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:31.668 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:31.668 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:31.668 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:31.668 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:31.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:31.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:31.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:31.668 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:31.678 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:31.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:27:31.678 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:31.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:27:31.688 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:27:31.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:27:31.688 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:27:31.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28106 150\n [Camera]
17-03-17 20:27:31.788 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:31.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:31.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:32.308 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:32.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:32.308 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:32.308 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:32.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:27:32.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:32.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:32.308 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:32.318 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:32.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:27:32.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28106 799
17-03-17 20:27:32.648 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:32.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:27:32.688 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:27:32.688 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:32.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:27:32.688 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:27:32.688 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:32.688 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:32.688 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:27:32.688 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:27:32.698 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:27:32.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:32.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:32.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:32.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:32.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:27:32.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:32.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:32.848 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:32.848 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:32.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:27:33.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-17 20:27:33.038 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:33.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28106 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-17 20:27:33.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:27:33.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127852528641279. ------
17-03-17 20:27:33.048 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:33.048 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13425 mm
17-03-17 20:27:33.048 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:27:33.048 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:27:33.048 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 20:27:33.048 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29327, sync = True, waitForSettling = False)
17-03-17 20:27:33.048 -07 000000501 INF: Z Motor: Moving to -0.134250 mm, started at -0.127853 mm, distance = -6.40 um
17-03-17 20:27:33.048 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:33.058 -07 000000501 INF: FPGA: Xmit ZDACW 29327\n [Z Motor]
17-03-17 20:27:33.058 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:27:33.058 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:27:33.068 -07 000000501 INF: FPGA: 'ZDACW 29327' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:27:33.068 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:33.068 -07 000000448 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:27:33.078 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:27:33.078 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:27:33.078 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:33.078 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:27:33.078 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:27:33.088 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:33.088 -07 000000448 INF: FPGA: Recv ZDACR 29327
17-03-17 20:27:33.098 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:27:33.098 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:27:33.098 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:27:33.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:27:33.238 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:27:33.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:33.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:27:33.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:27:33.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:33.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:33.238 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:27:33.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:33.248 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:27:33.278 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:27:33.278 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 20:27:33.468 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:27:33.468 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 20:27:33.498 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:33.498 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:27:33.508 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:27:33.508 -07 000000429 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:33.508 -07 000000429 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:27:33.508 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 20:27:34.458 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:34.458 -07 000000501 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:27:34.468 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:34.468 -07 000000429 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:34.478 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:34.478 -07 000000429 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:27:34.478 -07 000000429 INF: Y Motor: Moved to 74.8330 after 1429 ms (table move)
17-03-17 20:27:34.478 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134250 mm (DAC = 29327)
17-03-17 20:27:34.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30185
17-03-17 20:27:34.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:27:34.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.488 -07 000000501 INF: FPGA: Recv ZSGSRD 30200
17-03-17 20:27:34.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:27:34.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.498 -07 000000618 INF: FPGA: Recv ZSGSRD 30185
17-03-17 20:27:34.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.508 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.508 -07 000000501 INF: FPGA: Recv ZSGSRD 30179
17-03-17 20:27:34.518 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.518 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30189
17-03-17 20:27:34.528 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.528 -07 000000429 INF: FPGA: Recv ZSGSRD 30182
17-03-17 20:27:34.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30191
17-03-17 20:27:34.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30194
17-03-17 20:27:34.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30188
17-03-17 20:27:34.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:34.568 -07 000000501 INF: FPGA: Recv ZSGSRD 30186
17-03-17 20:27:34.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.578 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:34.578 -07 000000551 INF: FPGA: Recv ZPIEZORD 26166
17-03-17 20:27:34.588 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.475 V. Piezo Error = -8.9 V.
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30188 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30187 (-133.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30179 (-133.4 uncal um), Max = 30200 (-133.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30188, posNoise = 12, negNoise = 9
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: After move to -0.134250, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: Settle wait time = 1432 ms, measure time = 102 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:27:34.588 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:27:34.638 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:27:34.638 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:27:34.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:34.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:34.638 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:34.638 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:34.638 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:27:34.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:34.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:34.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:27:34.648 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:34.648 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:27:34.658 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:27:34.658 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:27:34.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:27:34.708 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:27:34.908 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:27:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:27:34.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:27:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:27:34.948 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:27:34.948 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:27:34.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:27:35.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:27:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:27:35.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:27:35.048 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:27:35.048 -07 000000382 INF: Autofocus start
17-03-17 20:27:35.048 -07 000000382 INF: MeasureProfile start
17-03-17 20:27:35.048 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:27:35.058 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:27:35.058 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:27:35.058 -07 000000382 INF: MeasureProfile done
17-03-17 20:27:35.058 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:27:35.058 -07 000000382 INF: Autofocus finished
17-03-17 20:27:35.258 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:27:35.258 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:27:35.258 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134257468146615. ----------
17-03-17 20:27:35.258 -07 000000610 INF: Cycle	38	Tile	19	Exposure Settings		A	414	G	199	T	199	C	414
17-03-17 20:27:35.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27868, sync = True, waitForSettling = True)
17-03-17 20:27:35.268 -07 000000610 INF: Z Motor: Moving to -0.127572 mm, started at -0.134257 mm, distance = 6.69 um
17-03-17 20:27:35.268 -07 000000610 INF: FPGA: Xmit ZDACW 27868\n [Z Motor]
17-03-17 20:27:35.268 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:27:35.278 -07 000000610 INF: FPGA: 'ZDACW 27868' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:27:35.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:27:35.278 -07 000000429 INF: FPGA: Recv ZDACR 27868
17-03-17 20:27:35.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:27:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29153
17-03-17 20:27:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29154
17-03-17 20:27:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:27:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29143
17-03-17 20:27:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:27:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29151
17-03-17 20:27:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:27:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.508 -07 000000429 INF: FPGA: Recv ZSGSRD 29146
17-03-17 20:27:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:27:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:27:35.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:27:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:27:35.538 -07 000000551 INF: FPGA: Recv ZPIEZORD 24822
17-03-17 20:27:35.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:35.548 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.252 V. Piezo Error = -9.5 V.
17-03-17 20:27:35.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29148 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29148 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29142 (-126.8 uncal um), Max = 29154 (-126.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:27:35.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29148, posNoise = 6, negNoise = 6
17-03-17 20:27:35.548 -07 000000610 INF: Z Motor: After move to -0.127572, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:27:35.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:27:35.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:27:35.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:27:35.548 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:27:35.548 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:27:35.548 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:27:35.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:27:35.548 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:27:35.548 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:27:35.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:27:35.548 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:27:35.548 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:27:35.548 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:27:35.548 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:27:35.548 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:27:35.548 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:27:35.558 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:27:35.568 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:27:35.568 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:27:35.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:27:35.568 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:27:35.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28045 150\n [Camera]
17-03-17 20:27:35.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:27:36.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-17 20:27:36.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-17 20:27:36.188 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:36.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:36.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:27:36.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-17 20:27:36.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-17 20:27:36.188 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:36.188 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:36.188 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:27:36.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28045 799
17-03-17 20:27:36.488 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.030322,
17-03-17 20:27:36.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-17 20:27:36.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:27:36.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:27:36.558 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:36.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:27:36.568 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:27:36.568 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:36.568 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:27:36.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:27:36.568 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:36.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:27:36.728 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-17 20:27:36.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-17 20:27:36.728 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:27:36.728 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:27:36.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:27:36.728 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-17 20:27:36.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-17 20:27:36.728 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:27:36.728 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:27:36.728 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:27:36.788 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 37. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:36.918 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-17 20:27:36.918 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:27:36.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28045 150' command took 2 ms to send, 1344 ms to get response, and 1347 ms overall
17-03-17 20:27:37.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:27:37.118 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:27:37.118 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:37.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:27:37.118 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:27:37.118 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:27:37.118 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:27:37.128 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:27:37.128 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:27:37.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:27:37.128 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:27:37.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:27:37.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:27:37.208 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 20:27:37.218 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 20:27:37.218 -07 000000610 INF: Imaging Cycle 38: ScanTilesCommand Cycle 38 time end. Duration was 151408 ms.
17-03-17 20:27:37.218 -07 000000610 INF: =================== Cycle #38 ===================
17-03-17 20:27:37.218 -07 000000610 INF: ===================  ===================
17-03-17 20:27:37.218 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:27:37.228 -07 000000618 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 20:27:37.228 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:27:37.228 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 20:27:37.228 -07 000000608 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 38, FrontChillerTemperature: 4.030322, FrontChillerHeatSinkTemperature: 0.1909, AmbientTemperature: 18.99893, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.86418, GreenLEDSensorTemperature: 25.3096, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 20:27:37.258 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.