17-03-17 20:27:37.308 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:27:37.308 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:27:37.308 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 20:27:37.308 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:37.318 -07 000000627 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:27:37.318 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:27:37.318 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:37.318 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:27:37.318 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:27:37.318 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:27:37.428 -07 000000382 INF: FPGA: Recv YMVTO 154377 870
17-03-17 20:27:37.428 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 20:27:37.428 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 20:27:37.428 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:27:37.428 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 20:27:40.428 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:27:40.428 -07 000000448 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:27:40.438 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:27:40.438 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:27:40.448 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:27:40.448 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 20:27:40.448 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3141 ms
17-03-17 20:27:40.458 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 60° ===================
17-03-17 20:27:40.458 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:27:40.458 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:27:40.458 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:27:40.468 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:27:40.468 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:27:40.468 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 20:27:40.478 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:27:40.478 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 60° ===================
17-03-17 20:27:40.478 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:27:40.478 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:27:40.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:40.508 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:27:40.508 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:27:40.508 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:27:40.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:27:40.828 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:27:40.828 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:27:40.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:40.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:27:40.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:27:40.998 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:27:40.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:27:40.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:41.028 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:27:41.028 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:27:41.028 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:27:41.158 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:27:41.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:41.788 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:27:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=540, R2=560, Total=1100. Warn if over 250 bubbles per interval.
17-03-17 20:27:41.848 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.986717,
17-03-17 20:27:44.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:44.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:44.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:44.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:45.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:45.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:45.258 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 20:27:45.258 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:27:45.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:45.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:27:45.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:27:45.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:45.578 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:27:45.578 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:27:45.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:27:45.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:27:45.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:46.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:46.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:46.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:27:46.198 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:27:46.788 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 20:27:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=542, R2=560, Total=1102. Warn if over 250 bubbles per interval.
17-03-17 20:27:47.218 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.958108,
17-03-17 20:27:47.418 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:27:47.418 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:27:47.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:47.438 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:27:47.438 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:27:47.438 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:27:47.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:27:47.588 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:27:47.588 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:27:47.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:47.658 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:27:47.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:27:47.758 -07 000000610 INF: =================== Cycle #39, Pumping Reagent CMS (4) ===================
17-03-17 20:27:47.758 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:27:47.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:47.788 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:27:47.788 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:27:47.788 -07 000000610 INF: =================== Cycle #39, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:27:47.918 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:27:47.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:49.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:49.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:49.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:49.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:49.878 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 20:27:49.878 -07 000000610 INF: =================== Cycle #39, Pumping Reagent CMS (4) ===================
17-03-17 20:27:50.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:50.038 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:27:50.038 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:27:50.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:50.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:27:50.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:27:50.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:27:50.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:27:50.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:50.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:50.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:50.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:27:50.818 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:27:51.788 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 20:27:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=543, R2=562, Total=1105. Warn if over 250 bubbles per interval.
17-03-17 20:27:52.038 -07 000000610 INF: AsyncDelayTimer waited 1207ms
17-03-17 20:27:52.038 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:27:52.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:52.058 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:27:52.058 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:27:52.058 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:27:52.208 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:27:52.228 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:27:52.228 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:27:52.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:27:52.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:27:52.298 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:27:52.398 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:27:52.398 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:27:52.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:52.428 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:27:52.428 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:27:52.428 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:27:52.558 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:27:52.588 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.975845,
17-03-17 20:27:52.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:53.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:53.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:53.498 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:27:53.498 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:27:53.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:53.658 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:27:53.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:27:53.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:27:53.818 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:27:53.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:27:53.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:27:53.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:27:53.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:54.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:54.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:54.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:27:54.438 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:27:54.438 -07 000000547 INF: WaitCommand(10000) start
17-03-17 20:27:54.438 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:27:54.438 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:27:55.658 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:27:55.658 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 20:27:55.688 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:27:55.688 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:27:55.818 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:27:55.858 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:56.788 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 20:27:56.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=546, R2=564, Total=1110. Warn if over 250 bubbles per interval.
17-03-17 20:27:57.388 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:57.418 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:27:57.838 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 20:27:57.868 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:27:57.868 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:27:57.868 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:27:57.868 -07 000000551 INF: ===================  ===================
17-03-17 20:27:57.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.966297,
17-03-17 20:28:01.788 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:28:01.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=546, R2=565, Total=1111. Warn if over 250 bubbles per interval.
17-03-17 20:28:03.328 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.983999,
17-03-17 20:28:04.448 -07 000000547 INF: WaitCommand(10000) end
17-03-17 20:28:04.448 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:04.448 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:28:04.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:04.488 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:28:04.488 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:28:04.488 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:28:04.618 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:28:04.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:06.788 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-17 20:28:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=551, R2=571, Total=1122. Warn if over 250 bubbles per interval.
17-03-17 20:28:08.698 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.993549,
17-03-17 20:28:10.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:10.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:11.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:11.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:11.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:11.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:11.788 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 4
17-03-17 20:28:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=4, R2=2, Total=6. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=573, Total=1128. Warn if over 250 bubbles per interval.
17-03-17 20:28:12.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:12.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:12.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:12.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:12.618 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:28:12.618 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:12.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:12.778 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:28:12.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:28:12.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:12.938 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:28:12.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:28:12.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:28:13.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:28:13.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:13.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:13.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:13.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:28:13.558 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:28:14.068 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.989471,
17-03-17 20:28:14.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:28:14.778 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:28:14.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:28:14.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:28:14.798 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:28:14.798 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:28:15.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:28:15.028 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:28:15.028 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:28:15.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:28:15.098 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:28:15.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:28:15.198 -07 000000610 INF: =================== Cycle #39, Pumping Reagent IMT (1) ===================
17-03-17 20:28:15.198 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:28:15.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:15.228 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:28:15.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:28:15.228 -07 000000610 INF: =================== Cycle #39, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:28:15.358 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:28:15.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:16.788 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 20:28:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:16.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:16.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:17.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:17.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:17.318 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:28:17.318 -07 000000610 INF: =================== Cycle #39, Pumping Reagent IMT (1) ===================
17-03-17 20:28:17.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:17.478 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:28:17.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:28:17.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:17.638 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:28:17.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:28:17.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:28:17.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:28:17.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:18.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:18.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:18.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:28:18.258 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:28:19.448 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.973092,
17-03-17 20:28:19.478 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:28:19.478 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:28:19.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:28:19.498 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:28:19.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:28:19.498 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:28:19.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:28:19.748 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:28:19.748 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:28:19.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:28:19.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:28:19.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:28:19.918 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:19.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:28:19.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:19.948 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:28:19.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:28:19.948 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:28:20.078 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:28:20.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:20.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:21.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:21.018 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:28:21.018 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:21.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:21.178 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:28:21.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:28:21.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:21.338 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:28:21.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:28:21.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:28:21.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:28:21.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:21.788 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:21.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:21.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:21.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:28:21.958 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:28:21.958 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 65° ===================
17-03-17 20:28:21.958 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:28:21.958 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:28:21.968 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:28:21.968 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:28:21.968 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:28:21.968 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-17 20:28:21.978 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:28:21.978 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 65° ===================
17-03-17 20:28:21.978 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:28:21.978 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:28:24.808 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.978563,
17-03-17 20:28:26.788 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:26.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:30.188 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.994908,
17-03-17 20:28:31.788 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:31.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:35.548 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.027603,
17-03-17 20:28:36.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:40.918 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.990831,
17-03-17 20:28:41.788 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:46.298 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.997626,
17-03-17 20:28:46.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:51.658 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.019446,
17-03-17 20:28:51.788 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:51.988 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:28:51.988 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:51.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:28:52.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:52.118 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:28:52.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:28:52.118 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:28:52.248 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:28:52.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:52.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:52.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:52.858 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:28:52.858 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:28:52.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:53.018 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:28:53.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:28:53.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:28:53.178 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:28:53.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:28:53.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:28:53.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:28:53.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:53.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:53.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:53.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:28:53.798 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:28:53.798 -07 000000547 INF: WaitCommand(30000) start
17-03-17 20:28:53.798 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:28:53.798 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:28:55.018 -07 000000480 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:28:55.018 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 20:28:55.048 -07 000000480 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:28:55.048 -07 000000480 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:28:55.178 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:28:55.218 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:56.788 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:28:56.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:28:57.028 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.983999,
17-03-17 20:28:57.558 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:57.588 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:28:58.008 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 20:28:58.038 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:28:58.038 -07 000000480 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:28:58.038 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:28:58.038 -07 000000480 INF: ===================  ===================
17-03-17 20:29:01.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:01.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:02.398 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.996267,
17-03-17 20:29:06.788 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:07.768 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.986717,
17-03-17 20:29:11.788 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:13.138 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.99219,
17-03-17 20:29:16.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:18.508 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.997626,
17-03-17 20:29:21.788 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:23.808 -07 000000547 INF: WaitCommand(30000) end
17-03-17 20:29:23.808 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 22° ===================
17-03-17 20:29:23.808 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:29:23.808 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:29:23.808 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:29:23.818 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:29:23.818 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:29:23.818 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 20:29:23.828 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:23.828 -07 000000610 INF: =================== Cycle #39, Flow Cell Temp 22° ===================
17-03-17 20:29:23.828 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:29:23.828 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:29:23.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:29:23.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:23.858 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:29:23.858 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:29:23.858 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:29:23.888 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.009895,
17-03-17 20:29:23.988 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:29:24.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:26.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:26.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:27.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:27.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:27.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:27.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:28.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:28.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:28.088 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:29:28.088 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:29:28.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:28.248 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:29:28.248 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:29:28.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:28.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:29:28.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:29:28.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:29:28.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:29:28.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:28.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:29.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:29.028 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:29:29.028 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:29:29.248 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.975845,
17-03-17 20:29:30.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:29:30.248 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:29:30.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:30.268 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:29:30.268 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:29:30.268 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:29:30.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:29:30.438 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:29:30.438 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:29:30.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:30.508 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:29:30.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:29:30.608 -07 000000610 INF: =================== Cycle #39, Pumping Reagent USM (2) ===================
17-03-17 20:29:30.608 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:29:30.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:30.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:29:30.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:29:30.638 -07 000000610 INF: =================== Cycle #39, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:29:30.768 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:29:30.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:31.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:31.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=555, R2=575, Total=1130. Warn if over 250 bubbles per interval.
17-03-17 20:29:32.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:32.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:32.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:32.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:32.728 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:29:32.728 -07 000000610 INF: =================== Cycle #39, Pumping Reagent USM (2) ===================
17-03-17 20:29:32.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:32.888 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:29:32.888 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:29:33.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:33.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:29:33.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:29:33.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:29:33.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:29:33.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:33.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:33.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:33.668 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:29:33.668 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:29:34.618 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.000345,
17-03-17 20:29:34.888 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:29:34.888 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:29:34.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:34.908 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:29:34.908 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:29:34.908 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:29:35.058 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:29:35.078 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:29:35.078 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:29:35.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:35.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:29:35.148 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:29:35.248 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:29:35.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:29:35.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:35.278 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:29:35.278 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:29:35.278 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:29:35.408 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:29:35.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:36.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:36.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:36.348 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 20:29:36.348 -07 000000610 INF: =================== Cycle #39, Pumping Reagent PR2 (3) ===================
17-03-17 20:29:36.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:36.508 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:29:36.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:29:36.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:29:36.668 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:29:36.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:29:36.668 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:29:36.788 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:29:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:29:36.798 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:29:36.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:37.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:37.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:37.288 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:29:37.288 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:29:37.288 -07 000000482 INF: WaitCommand(10000) start
17-03-17 20:29:37.288 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:29:37.288 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:29:38.508 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:29:38.508 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-17 20:29:38.538 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:29:38.538 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:29:38.668 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:29:38.708 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:39.988 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.996267,
17-03-17 20:29:40.238 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:40.268 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:29:40.688 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 20:29:40.718 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:29:40.718 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:29:40.718 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:29:40.718 -07 000000462 INF: ===================  ===================
17-03-17 20:29:41.788 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:29:45.358 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.009895,
17-03-17 20:29:46.788 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:29:47.298 -07 000000482 INF: WaitCommand(10000) end
17-03-17 20:29:47.298 -07 000000610 INF: =================== Cycle #39, Imaging ===================
17-03-17 20:29:47.298 -07 000000610 INF: Imaging Cycle 39: ScanTilesCommand Cycle 39 time start.
17-03-17 20:29:47.298 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:29:47.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:47.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:29:47.328 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:29:47.328 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:29:47.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:29:47.648 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:29:47.648 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:29:47.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:29:47.718 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:29:47.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:29:47.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:29:47.718 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:29:47.718 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:29:47.718 -07 000000459 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:29:47.728 -07 000000541 INF: FPGA: Recv EXLED1ON 
17-03-17 20:29:47.728 -07 000000459 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:29:47.728 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:29:47.728 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23150
17-03-17 20:29:47.738 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:47.738 -07 000000459 INF: RedLED: Using Red data: Photodiode ADC 23150 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 20:29:47.738 -07 000000459 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:29:47.738 -07 000000547 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:29:47.748 -07 000000459 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:47.748 -07 000000459 INF: RedLED: LED was on for 19 ms
17-03-17 20:29:47.748 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:29:47.748 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:29:47.748 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:29:47.748 -07 000000459 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:29:47.748 -07 000000541 INF: FPGA: Recv EXLED2ON 
17-03-17 20:29:47.758 -07 000000459 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:29:47.758 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:29:47.758 -07 000000569 INF: FPGA: Recv EXLED1ADCR 2108
17-03-17 20:29:47.768 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:47.768 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 2108 --> 0.9 mW (old method), or 183.1 mW (new method). Difference = 182.2 mW
17-03-17 20:29:47.768 -07 000000459 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:29:47.768 -07 000000541 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:29:47.778 -07 000000459 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:47.778 -07 000000459 INF: GreenLED: LED was on for 19 ms
17-03-17 20:29:47.778 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-17 20:29:47.778 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:29:47.778 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 20:29:47.788 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:29:47.788 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:29:48.288 -07 000000482 INF: FPGA: Recv EMOUT
17-03-17 20:29:48.288 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:29:48.288 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:29:48.288 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 20:29:48.298 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:29:48.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:29:48.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127576287519183. ------
17-03-17 20:29:48.298 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:29:48.298 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17937 mm
17-03-17 20:29:48.298 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:29:48.298 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:29:48.298 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:29:48.298 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:29:48.298 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 39184, sync = True, waitForSettling = False)
17-03-17 20:29:48.298 -07 000000459 INF: Z Motor: Moving to -0.179373 mm, started at -0.127576 mm, distance = -51.80 um
17-03-17 20:29:48.308 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:29:48.308 -07 000000459 INF: FPGA: Xmit ZDACW 39184\n [Z Motor]
17-03-17 20:29:48.318 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:29:48.328 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:29:49.238 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:29:49.238 -07 000000482 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:29:49.238 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:29:49.238 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 904 ms to get response, and 934 ms overall
17-03-17 20:29:49.238 -07 000000459 INF: FPGA: 'ZDACW 39184' command took 0 ms to send, 924 ms to get response, and 934 ms overall
17-03-17 20:29:49.238 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:29:49.238 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 914 ms to get response, and 935 ms overall
17-03-17 20:29:49.238 -07 000000569 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:29:49.238 -07 000000569 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:29:49.238 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:29:49.238 -07 000000547 INF: FPGA: Recv ZDACR 39184
17-03-17 20:29:49.248 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:29:49.248 -07 000000459 INF: Z Motor: MoveAbsStepped took 940 ms (did NOT wait for settling yet))
17-03-17 20:29:49.248 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:29:50.928 -07 000000482 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:29:50.928 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1689 ms overall
17-03-17 20:29:50.928 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:29:50.928 -07 000000569 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:29:50.928 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1689 ms, distance = 15.468 mm, average velocity = 9.158 mm/sec
17-03-17 20:29:51.568 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.005817,
17-03-17 20:29:51.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:29:53.778 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:29:53.778 -07 000000482 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:29:53.788 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.788 -07 000000569 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:29:53.808 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:29:53.808 -07 000000569 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:29:53.808 -07 000000569 INF: Y Motor: Moved to 59.9111 after 5503 ms
17-03-17 20:29:53.808 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179373 mm (DAC = 39184)
17-03-17 20:29:53.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.808 -07 000000547 INF: FPGA: Recv ZSGSRD 37211
17-03-17 20:29:53.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:29:53.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.818 -07 000000012 INF: FPGA: Recv ZSGSRD 37211
17-03-17 20:29:53.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:29:53.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.828 -07 000000459 INF: FPGA: Recv ZSGSRD 37214
17-03-17 20:29:53.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.838 -07 000000623 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:29:53.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.848 -07 000000480 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:29:53.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.858 -07 000000623 INF: FPGA: Recv ZSGSRD 37213
17-03-17 20:29:53.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.868 -07 000000569 INF: FPGA: Recv ZSGSRD 37212
17-03-17 20:29:53.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.878 -07 000000623 INF: FPGA: Recv ZSGSRD 37216
17-03-17 20:29:53.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.888 -07 000000569 INF: FPGA: Recv ZSGSRD 37212
17-03-17 20:29:53.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:53.898 -07 000000623 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:29:53.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.908 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:29:53.908 -07 000000482 INF: FPGA: Recv ZPIEZORD 33705
17-03-17 20:29:53.918 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.979 V. Piezo Error = -7.8 V.
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37212 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37212 (-178.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37208 (-178.5 uncal um), Max = 37216 (-178.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37212, posNoise = 4, negNoise = 4
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: After move to -0.179373, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: Settle wait time = 5506 ms, measure time = 104 ms (allowed 150 ms), total time = 5610 ms
17-03-17 20:29:53.918 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:29:53.968 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5663 ms
17-03-17 20:29:53.968 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:29:53.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:29:53.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:29:53.968 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:29:53.968 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:29:53.968 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:29:53.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:29:53.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:29:53.968 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:29:53.998 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:29:53.998 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:29:53.998 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:29:53.998 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:29:54.018 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:29:54.018 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 20:29:54.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:29:54.058 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:29:54.258 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:29:54.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:29:54.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:29:54.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 20:29:54.298 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:29:54.298 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:29:54.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:29:54.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:29:54.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:29:54.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:29:54.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:29:54.498 -07 000000623 INF: Image SNR check: start
17-03-17 20:29:54.498 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:29:54.498 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:29:54.508 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:29:54.508 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:29:54.518 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=63.10]
17-03-17 20:29:54.518 -07 000000623 INF: Autofocus start
17-03-17 20:29:54.518 -07 000000623 INF: MeasureProfile start
17-03-17 20:29:54.528 -07 000000623 INF: MeasureProfile done
17-03-17 20:29:54.528 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:29:54.528 -07 000000623 INF: Autofocus finished
17-03-17 20:29:54.708 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:29:54.708 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:29:54.708 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179381134230344. ----------
17-03-17 20:29:54.708 -07 000000610 INF: Cycle	39	Tile	1	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:29:54.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37717, sync = True, waitForSettling = True)
17-03-17 20:29:54.718 -07 000000610 INF: Z Motor: Moving to -0.172657 mm, started at -0.179381 mm, distance = 6.72 um
17-03-17 20:29:54.718 -07 000000610 INF: FPGA: Xmit ZDACW 37717\n [Z Motor]
17-03-17 20:29:54.718 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:29:54.728 -07 000000610 INF: FPGA: 'ZDACW 37717' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:29:54.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:29:54.728 -07 000000547 INF: FPGA: Recv ZDACR 37717
17-03-17 20:29:54.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:29:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.888 -07 000000012 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:29:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:29:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:29:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.908 -07 000000512 INF: FPGA: Recv ZSGSRD 36173
17-03-17 20:29:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.918 -07 000000459 INF: FPGA: Recv ZSGSRD 36158
17-03-17 20:29:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:29:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.938 -07 000000482 INF: FPGA: Recv ZSGSRD 36170
17-03-17 20:29:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:29:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36174
17-03-17 20:29:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.968 -07 000000480 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:29:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:54.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36173
17-03-17 20:29:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:29:54.988 -07 000000623 INF: FPGA: Recv ZPIEZORD 32277
17-03-17 20:29:54.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:54.998 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.755 V. Piezo Error = -8.6 V.
17-03-17 20:29:54.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36167 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36167 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36158 (-171.7 uncal um), Max = 36174 (-171.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:29:54.998 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36167, posNoise = 7, negNoise = 9
17-03-17 20:29:54.998 -07 000000610 INF: Z Motor: After move to -0.172657, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:29:54.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:29:54.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:29:54.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:29:54.998 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:29:54.998 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:29:54.998 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:29:54.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:29:54.998 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:29:54.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:29:54.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:29:54.998 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:29:54.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:29:54.998 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:29:55.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:29:55.008 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:29:55.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:29:55.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:29:55.028 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:29:55.028 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:29:55.028 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:29:55.028 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:29:55.038 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:29:55.038 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 20:29:55.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37894 150\n [Camera]
17-03-17 20:29:55.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:29:55.658 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:29:55.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:29:55.658 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:29:55.658 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:29:55.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:29:55.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:29:55.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:29:55.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:29:55.668 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:29:55.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:29:56.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:29:56.058 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:29:56.058 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:29:56.068 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:29:56.068 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:29:56.068 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:29:56.068 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:29:56.068 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:29:56.068 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:29:56.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37894 800
17-03-17 20:29:56.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:29:56.078 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:29:56.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:29:56.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:29:56.198 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:29:56.198 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:29:56.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:29:56.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:29:56.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:29:56.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:29:56.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:29:56.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:29:56.608 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:29:56.608 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:29:56.608 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:29:56.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:29:56.608 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:29:56.608 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:29:56.618 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:29:56.618 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:29:56.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:29:56.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:29:56.628 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:29:56.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37894 150' command took 2 ms to send, 1570 ms to get response, and 1580 ms overall
17-03-17 20:29:56.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:29:56.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:29:56.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172667832542204. ------
17-03-17 20:29:56.628 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:29:56.638 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17908 mm
17-03-17 20:29:56.638 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:29:57.558 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:29:57.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:29:57.558 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 920 ms to get response, and 923 ms overall
17-03-17 20:29:57.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:29:57.558 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:29:57.558 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:29:57.558 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:29:57.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:29:58.088 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:29:58.088 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:29:58.088 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 20:29:58.088 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 510 ms to get response, and 528 ms overall
17-03-17 20:29:58.088 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:29:58.088 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:29:58.088 -07 000000462 INF: Y Motor: Moving 1330 steps2
17-03-17 20:29:58.088 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.996267,
17-03-17 20:29:58.088 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 39121, sync = True, waitForSettling = False)
17-03-17 20:29:58.088 -07 000000569 INF: Z Motor: Moving to -0.179084 mm, started at -0.172668 mm, distance = -6.42 um
17-03-17 20:29:58.108 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:29:58.118 -07 000000569 INF: FPGA: Xmit ZDACW 39121\n [Z Motor]
17-03-17 20:29:58.118 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:29:58.128 -07 000000569 INF: FPGA: 'ZDACW 39121' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 20:29:58.148 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:29:58.148 -07 000000424 INF: FPGA: Recv ZDACR 39121
17-03-17 20:29:58.158 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:29:58.158 -07 000000569 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-17 20:29:58.478 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:29:58.478 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:29:58.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:29:58.518 -07 000000482 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:29:58.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:58.528 -07 000000462 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:29:58.528 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:29:58.528 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.831 mm, average velocity = 2.100 mm/sec
17-03-17 20:29:59.478 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:29:59.478 -07 000000569 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:29:59.488 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:29:59.488 -07 000000462 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:29:59.508 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:29:59.508 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:29:59.508 -07 000000462 INF: Y Motor: Moved to 60.7334 after 1951 ms (table move)
17-03-17 20:29:59.508 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179084 mm (DAC = 39121)
17-03-17 20:29:59.508 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.508 -07 000000480 INF: FPGA: Recv ZSGSRD 37165
17-03-17 20:29:59.518 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:29:59.518 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.518 -07 000000462 INF: FPGA: Recv ZSGSRD 37170
17-03-17 20:29:59.528 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:29:59.528 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.528 -07 000000480 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:29:59.538 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.538 -07 000000459 INF: FPGA: Recv ZSGSRD 37170
17-03-17 20:29:59.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.548 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.548 -07 000000462 INF: FPGA: Recv ZSGSRD 37172
17-03-17 20:29:59.558 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.558 -07 000000623 INF: FPGA: Recv ZSGSRD 37165
17-03-17 20:29:59.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.568 -07 000000569 INF: FPGA: Recv ZSGSRD 37163
17-03-17 20:29:59.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.578 -07 000000623 INF: FPGA: Recv ZSGSRD 37169
17-03-17 20:29:59.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.588 -07 000000569 INF: FPGA: Recv ZSGSRD 37160
17-03-17 20:29:59.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:29:59.598 -07 000000424 INF: FPGA: Recv ZSGSRD 37170
17-03-17 20:29:59.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.608 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:29:59.608 -07 000000482 INF: FPGA: Recv ZPIEZORD 33637
17-03-17 20:29:59.618 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.969 V. Piezo Error = -7.8 V.
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37167 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37168 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37160 (-178.2 uncal um), Max = 37172 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37167, posNoise = 5, negNoise = 7
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: After move to -0.179084, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: Settle wait time = 1423 ms, measure time = 104 ms (allowed 150 ms), total time = 1527 ms
17-03-17 20:29:59.618 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:29:59.668 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3028 ms
17-03-17 20:29:59.668 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:29:59.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:29:59.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:29:59.668 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:29:59.668 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:29:59.668 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:29:59.668 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:29:59.668 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:29:59.668 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:29:59.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:29:59.678 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:29:59.688 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:29:59.688 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:29:59.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:29:59.738 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:29:59.938 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:29:59.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:29:59.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:29:59.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 20:29:59.968 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:29:59.978 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:29:59.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:30:00.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 20:30:00.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:00.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:30:00.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:30:00.078 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:00.078 -07 000000424 INF: Autofocus start
17-03-17 20:30:00.078 -07 000000424 INF: MeasureProfile start
17-03-17 20:30:00.078 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:00.088 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:00.088 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:30:00.088 -07 000000424 INF: MeasureProfile done
17-03-17 20:30:00.088 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:30:00.088 -07 000000424 INF: Autofocus finished
17-03-17 20:30:00.288 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:30:00.288 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:30:00.288 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.179092044683964. ----------
17-03-17 20:30:00.288 -07 000000610 INF: Cycle	39	Tile	2	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:00.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37618, sync = True, waitForSettling = True)
17-03-17 20:30:00.298 -07 000000610 INF: Z Motor: Moving to -0.172204 mm, started at -0.179092 mm, distance = 6.89 um
17-03-17 20:30:00.298 -07 000000610 INF: FPGA: Xmit ZDACW 37618\n [Z Motor]
17-03-17 20:30:00.298 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:30:00.308 -07 000000610 INF: FPGA: 'ZDACW 37618' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:00.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:00.308 -07 000000482 INF: FPGA: Recv ZDACR 37618
17-03-17 20:30:00.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.468 -07 000000424 INF: FPGA: Recv ZSGSRD 36101
17-03-17 20:30:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.478 -07 000000623 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:30:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36098
17-03-17 20:30:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.498 -07 000000462 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:30:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.508 -07 000000424 INF: FPGA: Recv ZSGSRD 36100
17-03-17 20:30:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36093
17-03-17 20:30:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.528 -07 000000480 INF: FPGA: Recv ZSGSRD 36093
17-03-17 20:30:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.538 -07 000000462 INF: FPGA: Recv ZSGSRD 36099
17-03-17 20:30:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36101
17-03-17 20:30:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:00.558 -07 000000482 INF: FPGA: Recv ZSGSRD 36095
17-03-17 20:30:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:00.568 -07 000000623 INF: FPGA: Recv ZPIEZORD 32199
17-03-17 20:30:00.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:00.578 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.6 V.
17-03-17 20:30:00.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36097 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36096 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36092 (-171.3 uncal um), Max = 36101 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:00.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36097, posNoise = 4, negNoise = 5
17-03-17 20:30:00.578 -07 000000610 INF: Z Motor: After move to -0.172204, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:00.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:30:00.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:00.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:00.578 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:00.578 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:00.578 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:00.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:00.578 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:00.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:00.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:00.578 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:00.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:00.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:00.588 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:30:00.588 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:00.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:00.588 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:00.598 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:30:00.598 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:00.598 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:30:00.598 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:00.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37795 150\n [Camera]
17-03-17 20:30:00.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:01.218 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:01.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:01.218 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:01.218 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:01.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 20:30:01.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:01.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:01.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:01.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:01.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:30:01.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:30:01.618 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:30:01.618 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:01.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:30:01.618 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:30:01.618 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:01.618 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:01.618 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:30:01.618 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:01.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:30:01.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37795 800
17-03-17 20:30:01.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:01.758 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:01.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:01.758 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:01.758 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:01.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:30:01.758 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:01.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:01.768 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:01.768 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:01.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 20:30:02.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:30:02.138 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:30:02.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:02.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:30:02.148 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:30:02.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:02.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:02.148 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:30:02.148 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:30:02.158 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:30:02.168 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:02.168 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:02.168 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:02.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37795 150' command took 2 ms to send, 1553 ms to get response, and 1564 ms overall
17-03-17 20:30:02.168 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:02.178 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172817
17-03-17 20:30:02.178 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17282 mm
17-03-17 20:30:02.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:02.178 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:30:02.178 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:30:02.178 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:02.188 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37752, sync = True, waitForSettling = False)
17-03-17 20:30:02.188 -07 000000512 INF: Z Motor: Moving to -0.172818 mm, started at -0.172218 mm, distance = -0.60 um
17-03-17 20:30:02.198 -07 000000512 INF: FPGA: Xmit ZDACW 37752\n [Z Motor]
17-03-17 20:30:02.738 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:30:02.738 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:30:02.738 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 540 ms to get response, and 550 ms overall
17-03-17 20:30:02.738 -07 000000480 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:02.738 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:02.738 -07 000000480 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:30:02.738 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:02.738 -07 000000512 INF: FPGA: 'ZDACW 37752' command took 0 ms to send, 530 ms to get response, and 549 ms overall
17-03-17 20:30:02.748 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:02.748 -07 000000541 INF: FPGA: Recv ZDACR 37752
17-03-17 20:30:02.758 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:30:02.758 -07 000000512 INF: Z Motor: MoveAbsStepped took 569 ms (did NOT wait for settling yet))
17-03-17 20:30:03.108 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:30:03.108 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 20:30:03.158 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:03.158 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:30:03.168 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:30:03.168 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:03.168 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:30:03.168 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-17 20:30:03.468 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.986717,
17-03-17 20:30:04.118 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:04.118 -07 000000482 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:30:04.128 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:04.128 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:04.148 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:04.148 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:04.148 -07 000000480 INF: Y Motor: Moved to 61.5640 after 1964 ms (table move)
17-03-17 20:30:04.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172818 mm (DAC = 37752)
17-03-17 20:30:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.148 -07 000000482 INF: FPGA: Recv ZSGSRD 36196
17-03-17 20:30:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.158 -07 000000623 INF: FPGA: Recv ZSGSRD 36193
17-03-17 20:30:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.168 -07 000000512 INF: FPGA: Recv ZSGSRD 36194
17-03-17 20:30:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.178 -07 000000424 INF: FPGA: Recv ZSGSRD 36198
17-03-17 20:30:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36195
17-03-17 20:30:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.198 -07 000000480 INF: FPGA: Recv ZSGSRD 36191
17-03-17 20:30:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.208 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 20:30:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.218 -07 000000480 INF: FPGA: Recv ZSGSRD 36194
17-03-17 20:30:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36193
17-03-17 20:30:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.238 -07 000000541 INF: FPGA: Recv ZSGSRD 36190
17-03-17 20:30:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:04.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 32354
17-03-17 20:30:04.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.5 V.
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36193 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36194 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36186 (-171.9 uncal um), Max = 36198 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36193, posNoise = 5, negNoise = 7
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: After move to -0.172818, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: Settle wait time = 1965 ms, measure time = 104 ms (allowed 150 ms), total time = 2069 ms
17-03-17 20:30:04.258 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:04.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2123 ms
17-03-17 20:30:04.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:04.308 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.172834862057889. ----------
17-03-17 20:30:04.308 -07 000000610 INF: Cycle	39	Tile	3	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:04.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37575, sync = True, waitForSettling = True)
17-03-17 20:30:04.308 -07 000000610 INF: Z Motor: Moving to -0.172007 mm, started at -0.172835 mm, distance = 0.83 um
17-03-17 20:30:04.308 -07 000000610 INF: FPGA: Xmit ZDACW 37575\n [Z Motor]
17-03-17 20:30:04.308 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:30:04.318 -07 000000610 INF: FPGA: 'ZDACW 37575' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:04.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:04.318 -07 000000480 INF: FPGA: Recv ZDACR 37575
17-03-17 20:30:04.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.478 -07 000000482 INF: FPGA: Recv ZSGSRD 36069
17-03-17 20:30:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.488 -07 000000541 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:30:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.498 -07 000000623 INF: FPGA: Recv ZSGSRD 36074
17-03-17 20:30:04.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36069
17-03-17 20:30:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36065
17-03-17 20:30:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.528 -07 000000512 INF: FPGA: Recv ZSGSRD 36062
17-03-17 20:30:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.538 -07 000000623 INF: FPGA: Recv ZSGSRD 36064
17-03-17 20:30:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.548 -07 000000482 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:30:04.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.558 -07 000000623 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:30:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:04.568 -07 000000462 INF: FPGA: Recv ZSGSRD 36067
17-03-17 20:30:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:04.578 -07 000000482 INF: FPGA: Recv ZPIEZORD 32176
17-03-17 20:30:04.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:04.588 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.6 V.
17-03-17 20:30:04.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36067 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36067 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36062 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:04.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36067, posNoise = 7, negNoise = 5
17-03-17 20:30:04.588 -07 000000610 INF: Z Motor: After move to -0.172007, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:04.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:30:04.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:04.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:04.588 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:04.588 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:04.588 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:04.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:04.588 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:04.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:04.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:30:04.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:04.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:04.588 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:04.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:04.598 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:04.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:04.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:04.608 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:04.608 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:04.608 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:04.608 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:04.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37752 150\n [Camera]
17-03-17 20:30:04.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:05.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:05.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:05.228 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:05.228 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:05.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:30:05.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:05.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:05.228 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:05.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:05.228 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:30:05.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37752 800
17-03-17 20:30:05.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:05.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:30:05.628 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:30:05.628 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:05.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:30:05.628 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:30:05.628 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:05.628 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:05.628 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:30:05.638 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:05.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:30:05.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:05.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:05.768 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:05.768 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:05.778 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:30:05.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:05.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:05.778 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:05.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:05.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:30:06.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:30:06.168 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:30:06.168 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:06.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:30:06.168 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:30:06.168 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:06.168 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:06.178 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:06.178 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:30:06.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:30:06.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:06.188 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:06.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37752 150' command took 2 ms to send, 1561 ms to get response, and 1570 ms overall
17-03-17 20:30:06.188 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171799
17-03-17 20:30:06.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17180 mm
17-03-17 20:30:06.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:06.188 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:30:06.188 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:30:06.188 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:06.188 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37529, sync = True, waitForSettling = False)
17-03-17 20:30:06.188 -07 000000512 INF: Z Motor: Moving to -0.171797 mm, started at -0.172025 mm, distance = 0.23 um
17-03-17 20:30:06.198 -07 000000512 INF: FPGA: Xmit ZDACW 37529\n [Z Motor]
17-03-17 20:30:06.738 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:30:06.738 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:06.738 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 540 ms to get response, and 544 ms overall
17-03-17 20:30:06.738 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:06.738 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:06.738 -07 000000462 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:30:06.738 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:06.738 -07 000000512 INF: FPGA: 'ZDACW 37529' command took 0 ms to send, 530 ms to get response, and 543 ms overall
17-03-17 20:30:06.748 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:06.748 -07 000000569 INF: FPGA: Recv ZDACR 37529
17-03-17 20:30:06.758 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:30:06.758 -07 000000512 INF: Z Motor: MoveAbsStepped took 562 ms (did NOT wait for settling yet))
17-03-17 20:30:06.788 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:07.108 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:30:07.108 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 20:30:07.148 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:07.148 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:30:07.158 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:07.158 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:07.158 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:30:07.158 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 20:30:08.108 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:08.108 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:30:08.118 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:08.118 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:08.138 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:08.138 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:08.138 -07 000000462 INF: Y Motor: Moved to 62.3955 after 1945 ms (table move)
17-03-17 20:30:08.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171797 mm (DAC = 37529)
17-03-17 20:30:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.138 -07 000000569 INF: FPGA: Recv ZSGSRD 36035
17-03-17 20:30:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.148 -07 000000512 INF: FPGA: Recv ZSGSRD 36041
17-03-17 20:30:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.158 -07 000000512 INF: FPGA: Recv ZSGSRD 36034
17-03-17 20:30:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.168 -07 000000462 INF: FPGA: Recv ZSGSRD 36041
17-03-17 20:30:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.178 -07 000000541 INF: FPGA: Recv ZSGSRD 36038
17-03-17 20:30:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36029
17-03-17 20:30:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.198 -07 000000462 INF: FPGA: Recv ZSGSRD 36036
17-03-17 20:30:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36027
17-03-17 20:30:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.218 -07 000000462 INF: FPGA: Recv ZSGSRD 36037
17-03-17 20:30:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36036
17-03-17 20:30:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:08.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 32144
17-03-17 20:30:08.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.6 V.
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36035 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36027 (-170.9 uncal um), Max = 36041 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36035, posNoise = 6, negNoise = 8
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: After move to -0.171797, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: Settle wait time = 1946 ms, measure time = 107 ms (allowed 150 ms), total time = 2053 ms
17-03-17 20:30:08.248 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:08.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2105 ms
17-03-17 20:30:08.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:08.298 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171819836539491. ----------
17-03-17 20:30:08.298 -07 000000610 INF: Cycle	39	Tile	4	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:08.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-17 20:30:08.298 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.171820 mm, distance = 0.83 um
17-03-17 20:30:08.298 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-17 20:30:08.298 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:08.308 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:08.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:08.308 -07 000000541 INF: FPGA: Recv ZDACR 37353
17-03-17 20:30:08.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35909
17-03-17 20:30:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:08.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35914
17-03-17 20:30:08.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.488 -07 000000569 INF: FPGA: Recv ZSGSRD 35908
17-03-17 20:30:08.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:30:08.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.518 -07 000000541 INF: FPGA: Recv ZSGSRD 35903
17-03-17 20:30:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:08.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.528 -07 000000569 INF: FPGA: Recv ZSGSRD 35909
17-03-17 20:30:08.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.538 -07 000000012 INF: FPGA: Recv ZSGSRD 35911
17-03-17 20:30:08.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35913
17-03-17 20:30:08.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.558 -07 000000012 INF: FPGA: Recv ZSGSRD 35909
17-03-17 20:30:08.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:08.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35906
17-03-17 20:30:08.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:08.578 -07 000000512 INF: FPGA: Recv ZPIEZORD 31973
17-03-17 20:30:08.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:08.588 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -8.7 V.
17-03-17 20:30:08.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35909 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35909 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35914 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:30:08.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35909, posNoise = 5, negNoise = 6
17-03-17 20:30:08.588 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:08.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 20:30:08.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:08.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:08.588 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:08.588 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:08.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:08.588 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:08.588 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:08.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:08.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:30:08.588 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:08.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:08.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:08.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:30:08.598 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:08.598 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:30:08.598 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:08.608 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:30:08.608 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:30:08.608 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:30:08.608 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:30:08.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37529 150\n [Camera]
17-03-17 20:30:08.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:08.828 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.005817,
17-03-17 20:30:09.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:09.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:09.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:09.228 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:09.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:30:09.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:09.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:09.228 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:09.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:09.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:30:09.418 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37529 800
17-03-17 20:30:09.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:09.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:30:09.598 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:30:09.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:09.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:09.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:30:09.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:09.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:09.608 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:09.608 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:30:09.618 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:30:09.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:09.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:09.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:09.768 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:09.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 20:30:09.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:09.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:09.768 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:09.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:09.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 20:30:09.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:09.958 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:09.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37529 150' command took 2 ms to send, 1346 ms to get response, and 1350 ms overall
17-03-17 20:30:09.958 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171431
17-03-17 20:30:09.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17143 mm
17-03-17 20:30:09.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:09.968 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:30:09.968 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:30:09.968 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:09.968 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37449, sync = True, waitForSettling = False)
17-03-17 20:30:09.968 -07 000000424 INF: Z Motor: Moving to -0.171431 mm, started at -0.171010 mm, distance = -0.42 um
17-03-17 20:30:09.968 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:30:09.978 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:30:09.978 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:09.978 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:09.978 -07 000000512 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:30:09.978 -07 000000424 INF: FPGA: Xmit ZDACW 37449\n [Z Motor]
17-03-17 20:30:09.978 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:30:09.988 -07 000000424 INF: FPGA: 'ZDACW 37449' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:30:09.988 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:09.998 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:09.998 -07 000000569 INF: FPGA: Recv ZDACR 37449
17-03-17 20:30:10.008 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:10.008 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:30:10.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:30:10.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:30:10.168 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:10.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:30:10.168 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:30:10.168 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:10.168 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:10.168 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:30:10.178 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:10.178 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:30:10.358 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:30:10.358 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:30:10.398 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:10.398 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:30:10.408 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:10.408 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:10.408 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:30:10.408 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 20:30:11.358 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:11.358 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:30:11.368 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:11.368 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:11.388 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:11.388 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:11.388 -07 000000512 INF: Y Motor: Moved to 63.2241 after 1421 ms (table move)
17-03-17 20:30:11.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171431 mm (DAC = 37449)
17-03-17 20:30:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.388 -07 000000480 INF: FPGA: Recv ZSGSRD 35970
17-03-17 20:30:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.398 -07 000000547 INF: FPGA: Recv ZSGSRD 35973
17-03-17 20:30:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.408 -07 000000512 INF: FPGA: Recv ZSGSRD 35976
17-03-17 20:30:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.418 -07 000000512 INF: FPGA: Recv ZSGSRD 35976
17-03-17 20:30:11.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35983
17-03-17 20:30:11.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35979
17-03-17 20:30:11.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.448 -07 000000547 INF: FPGA: Recv ZSGSRD 35981
17-03-17 20:30:11.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.458 -07 000000512 INF: FPGA: Recv ZSGSRD 35977
17-03-17 20:30:11.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.468 -07 000000512 INF: FPGA: Recv ZSGSRD 35966
17-03-17 20:30:11.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35971
17-03-17 20:30:11.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:11.488 -07 000000512 INF: FPGA: Recv ZPIEZORD 32073
17-03-17 20:30:11.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.6 V.
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35975 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35976 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35966 (-170.5 uncal um), Max = 35983 (-170.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35975, posNoise = 8, negNoise = 9
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: After move to -0.171431, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 105 ms (allowed 150 ms), total time = 1527 ms
17-03-17 20:30:11.498 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:11.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:30:11.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:11.548 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171434383810985. ----------
17-03-17 20:30:11.548 -07 000000610 INF: Cycle	39	Tile	5	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:11.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 20:30:11.548 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.171434 mm, distance = 0.81 um
17-03-17 20:30:11.548 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 20:30:11.548 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:30:11.558 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:11.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:11.558 -07 000000512 INF: FPGA: Recv ZDACR 37272
17-03-17 20:30:11.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.718 -07 000000512 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:30:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35850
17-03-17 20:30:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.738 -07 000000512 INF: FPGA: Recv ZSGSRD 35854
17-03-17 20:30:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.748 -07 000000480 INF: FPGA: Recv ZSGSRD 35852
17-03-17 20:30:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:30:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.768 -07 000000512 INF: FPGA: Recv ZSGSRD 35850
17-03-17 20:30:11.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.778 -07 000000512 INF: FPGA: Recv ZSGSRD 35850
17-03-17 20:30:11.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.788 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:11.788 -07 000000623 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:30:11.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.798 -07 000000547 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:30:11.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:11.808 -07 000000512 INF: FPGA: Recv ZSGSRD 35849
17-03-17 20:30:11.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:11.818 -07 000000547 INF: FPGA: Recv ZPIEZORD 31871
17-03-17 20:30:11.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:11.828 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.8 V.
17-03-17 20:30:11.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35849 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35845 (-169.7 uncal um), Max = 35854 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:11.828 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35849, posNoise = 5, negNoise = 4
17-03-17 20:30:11.828 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:11.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:30:11.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:11.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:11.828 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:11.828 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:11.828 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:11.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:11.828 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:11.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:11.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:11.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:11.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:11.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:11.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:11.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:11.838 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:11.838 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:11.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:11.848 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:11.848 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:30:11.848 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:11.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37449 150\n [Camera]
17-03-17 20:30:12.048 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:12.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:12.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:12.468 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:12.468 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:12.468 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 20:30:12.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:12.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:12.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:12.618 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:12.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:30:12.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37449 800
17-03-17 20:30:12.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:12.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:30:12.868 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:30:12.868 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:12.868 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:12.868 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:30:12.988 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:30:12.988 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:30:12.998 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:12.998 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:30:12.998 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 20:30:13.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:13.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:13.008 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:13.018 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:13.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:13.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:13.018 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:13.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:30:13.018 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:13.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:30:13.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:13.208 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:13.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37449 150' command took 2 ms to send, 1340 ms to get response, and 1350 ms overall
17-03-17 20:30:13.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:30:13.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170624933081124. ------
17-03-17 20:30:13.218 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:13.218 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17708 mm
17-03-17 20:30:13.218 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:13.228 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:13.228 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:13.228 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:30:13.228 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38684, sync = True, waitForSettling = False)
17-03-17 20:30:13.228 -07 000000480 INF: Z Motor: Moving to -0.177084 mm, started at -0.170625 mm, distance = -6.46 um
17-03-17 20:30:13.228 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:30:13.228 -07 000000012 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:30:13.238 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:13.238 -07 000000433 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:30:13.248 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:30:13.248 -07 000000012 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:13.248 -07 000000480 INF: FPGA: Xmit ZDACW 38684\n [Z Motor]
17-03-17 20:30:13.248 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:30:13.248 -07 000000012 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:13.248 -07 000000012 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:30:13.258 -07 000000480 INF: FPGA: 'ZDACW 38684' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:30:13.258 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:13.268 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:13.268 -07 000000433 INF: FPGA: Recv ZDACR 38684
17-03-17 20:30:13.278 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:13.278 -07 000000480 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:30:13.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:30:13.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:30:13.398 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:13.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:30:13.408 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:30:13.408 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:13.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:13.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:30:13.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:13.418 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:30:13.428 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:30:13.428 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:30:13.638 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:30:13.638 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-17 20:30:13.668 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:13.668 -07 000000623 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:30:13.678 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:13.678 -07 000000012 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:13.678 -07 000000012 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 20:30:13.678 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 20:30:14.188 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.999021,
17-03-17 20:30:14.628 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:14.628 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:30:14.638 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.638 -07 000000012 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:14.658 -07 000000012 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:14.658 -07 000000012 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:30:14.658 -07 000000012 INF: Y Motor: Moved to 64.0571 after 1426 ms (table move)
17-03-17 20:30:14.658 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177084 mm (DAC = 38684)
17-03-17 20:30:14.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.658 -07 000000459 INF: FPGA: Recv ZSGSRD 36858
17-03-17 20:30:14.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:14.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36857
17-03-17 20:30:14.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.678 -07 000000012 INF: FPGA: Recv ZSGSRD 36854
17-03-17 20:30:14.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.688 -07 000000569 INF: FPGA: Recv ZSGSRD 36857
17-03-17 20:30:14.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.698 -07 000000569 INF: FPGA: Recv ZSGSRD 36851
17-03-17 20:30:14.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.708 -07 000000569 INF: FPGA: Recv ZSGSRD 36852
17-03-17 20:30:14.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.718 -07 000000569 INF: FPGA: Recv ZSGSRD 36859
17-03-17 20:30:14.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.728 -07 000000569 INF: FPGA: Recv ZSGSRD 36860
17-03-17 20:30:14.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.738 -07 000000569 INF: FPGA: Recv ZSGSRD 36859
17-03-17 20:30:14.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:14.748 -07 000000569 INF: FPGA: Recv ZSGSRD 36856
17-03-17 20:30:14.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.758 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:14.758 -07 000000569 INF: FPGA: Recv ZPIEZORD 33217
17-03-17 20:30:14.768 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.1 V.
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36856 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36857 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36851 (-176.2 uncal um), Max = 36860 (-176.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36856, posNoise = 4, negNoise = 5
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: After move to -0.177084, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:30:14.768 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:14.818 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:30:14.818 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:14.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:14.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:14.818 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:14.818 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:14.818 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:30:14.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:14.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:30:14.818 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:30:14.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:14.828 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:30:14.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:30:14.838 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:30:14.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:30:14.888 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:30:15.088 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:30:15.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:30:15.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:30:15.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092260000, 0x0, 559484976) start.
17-03-17 20:30:15.128 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:30:15.128 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:30:15.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:30:15.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092260000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:30:15.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:15.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:30:15.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:30:15.228 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:15.228 -07 000000480 INF: Autofocus start
17-03-17 20:30:15.228 -07 000000480 INF: MeasureProfile start
17-03-17 20:30:15.348 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:15.348 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-17 20:30:15.348 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:30:15.358 -07 000000480 INF: MeasureProfile done
17-03-17 20:30:15.358 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:30:15.358 -07 000000480 INF: Autofocus finished
17-03-17 20:30:15.548 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:30:15.548 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 20:30:15.558 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177094114707877. ----------
17-03-17 20:30:15.558 -07 000000610 INF: Cycle	39	Tile	6	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:15.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37216, sync = True, waitForSettling = True)
17-03-17 20:30:15.558 -07 000000610 INF: Z Motor: Moving to -0.170364 mm, started at -0.177094 mm, distance = 6.73 um
17-03-17 20:30:15.558 -07 000000610 INF: FPGA: Xmit ZDACW 37216\n [Z Motor]
17-03-17 20:30:15.568 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:15.568 -07 000000610 INF: FPGA: 'ZDACW 37216' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:30:15.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:15.568 -07 000000569 INF: FPGA: Recv ZDACR 37216
17-03-17 20:30:15.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:15.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:30:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.738 -07 000000569 INF: FPGA: Recv ZSGSRD 35816
17-03-17 20:30:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.748 -07 000000569 INF: FPGA: Recv ZSGSRD 35812
17-03-17 20:30:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35804
17-03-17 20:30:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35812
17-03-17 20:30:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35814
17-03-17 20:30:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.788 -07 000000482 INF: FPGA: Recv ZSGSRD 35811
17-03-17 20:30:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.798 -07 000000480 INF: FPGA: Recv ZSGSRD 35807
17-03-17 20:30:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35816
17-03-17 20:30:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:15.818 -07 000000569 INF: FPGA: Recv ZSGSRD 35815
17-03-17 20:30:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:15.828 -07 000000626 INF: FPGA: Recv ZPIEZORD 31838
17-03-17 20:30:15.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:15.838 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -8.8 V.
17-03-17 20:30:15.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35812 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35812 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35804 (-169.5 uncal um), Max = 35816 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:30:15.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35812, posNoise = 4, negNoise = 8
17-03-17 20:30:15.838 -07 000000610 INF: Z Motor: After move to -0.170364, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:15.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 20:30:15.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:15.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:15.838 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:15.838 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:15.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:15.838 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:15.838 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:15.838 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:15.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:30:15.838 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:15.838 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:15.838 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:15.838 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:30:15.848 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:15.848 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:15.848 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:15.848 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:30:15.848 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:30:15.858 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:30:15.858 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:30:15.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37393 150\n [Camera]
17-03-17 20:30:16.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:16.468 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:16.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:16.478 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:16.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:16.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:16.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:16.478 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:16.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 20:30:16.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:16.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:30:16.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37393 800
17-03-17 20:30:16.788 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:16.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:16.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:30:16.848 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:30:16.848 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:16.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:30:16.848 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:30:16.858 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:16.858 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:16.858 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:30:16.858 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:16.868 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:30:17.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:17.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:17.018 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:17.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:17.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:17.018 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:17.028 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:17.028 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1106936080, 0x0, 391868352) start.
17-03-17 20:30:17.028 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:17.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:30:17.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:17.208 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:17.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37393 150' command took 2 ms to send, 1344 ms to get response, and 1349 ms overall
17-03-17 20:30:17.208 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170920
17-03-17 20:30:17.208 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17092 mm
17-03-17 20:30:17.208 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:17.208 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:30:17.208 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:30:17.208 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:17.208 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37337, sync = True, waitForSettling = False)
17-03-17 20:30:17.208 -07 000000569 INF: Z Motor: Moving to -0.170918 mm, started at -0.170387 mm, distance = -0.53 um
17-03-17 20:30:17.218 -07 000000569 INF: FPGA: Xmit ZDACW 37337\n [Z Motor]
17-03-17 20:30:17.218 -07 000000541 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:30:17.218 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:30:17.218 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:17.218 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:17.218 -07 000000480 INF: Y Motor: Moving 1337 steps-12
17-03-17 20:30:17.218 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:30:17.228 -07 000000569 INF: FPGA: 'ZDACW 37337' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:17.228 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:17.228 -07 000000433 INF: FPGA: Recv ZDACR 37337
17-03-17 20:30:17.238 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:17.238 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:17.238 -07 000000569 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:30:17.408 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:30:17.408 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:30:17.408 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:17.408 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1106936080, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:30:17.408 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:17.408 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:17.418 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:30:17.418 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:17.418 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:30:17.428 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:30:17.608 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:30:17.608 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:30:17.648 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:17.648 -07 000000433 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:30:17.658 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:17.658 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:17.658 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:30:17.658 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.835 mm, average velocity = 2.110 mm/sec
17-03-17 20:30:18.608 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:18.608 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:30:18.618 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.618 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:18.638 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:18.638 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:18.638 -07 000000480 INF: Y Motor: Moved to 64.8789 after 1424 ms (table move)
17-03-17 20:30:18.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170918 mm (DAC = 37337)
17-03-17 20:30:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:30:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35889
17-03-17 20:30:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35897
17-03-17 20:30:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.668 -07 000000433 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:30:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35904
17-03-17 20:30:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35901
17-03-17 20:30:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.698 -07 000000480 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:30:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:30:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35891
17-03-17 20:30:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:30:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:18.738 -07 000000569 INF: FPGA: Recv ZPIEZORD 31955
17-03-17 20:30:18.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.7 V.
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35895 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35895 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35895, posNoise = 9, negNoise = 6
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: After move to -0.170918, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-17 20:30:18.748 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:18.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:30:18.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:18.798 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.170920446839645. ----------
17-03-17 20:30:18.798 -07 000000610 INF: Cycle	39	Tile	7	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:18.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37161, sync = True, waitForSettling = True)
17-03-17 20:30:18.798 -07 000000610 INF: Z Motor: Moving to -0.170112 mm, started at -0.170920 mm, distance = 0.81 um
17-03-17 20:30:18.798 -07 000000610 INF: FPGA: Xmit ZDACW 37161\n [Z Motor]
17-03-17 20:30:18.798 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:30:18.808 -07 000000610 INF: FPGA: 'ZDACW 37161' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:18.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:18.808 -07 000000480 INF: FPGA: Recv ZDACR 37161
17-03-17 20:30:18.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:18.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35771
17-03-17 20:30:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35774
17-03-17 20:30:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35768
17-03-17 20:30:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:18.998 -07 000000462 INF: FPGA: Recv ZSGSRD 35773
17-03-17 20:30:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35779
17-03-17 20:30:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35769
17-03-17 20:30:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.028 -07 000000462 INF: FPGA: Recv ZSGSRD 35772
17-03-17 20:30:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.038 -07 000000462 INF: FPGA: Recv ZSGSRD 35769
17-03-17 20:30:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.048 -07 000000462 INF: FPGA: Recv ZSGSRD 35769
17-03-17 20:30:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:19.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35774
17-03-17 20:30:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:19.068 -07 000000482 INF: FPGA: Recv ZPIEZORD 31803
17-03-17 20:30:19.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:19.078 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.8 V.
17-03-17 20:30:19.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35772 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35772 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35768 (-169.2 uncal um), Max = 35779 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:19.078 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35772, posNoise = 7, negNoise = 4
17-03-17 20:30:19.078 -07 000000610 INF: Z Motor: After move to -0.170112, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:19.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:30:19.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:19.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:19.078 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:19.078 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:19.078 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:19.078 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:19.078 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:30:19.078 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:19.078 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:19.078 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:19.078 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:19.078 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:19.088 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:19.088 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:19.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:19.088 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:19.098 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:30:19.098 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:30:19.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:30:19.098 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:30:19.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37337 150\n [Camera]
17-03-17 20:30:19.298 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:19.548 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.999021,
17-03-17 20:30:19.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:19.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:19.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:19.718 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:19.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:19.718 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:19.828 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:19.828 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199916248, 0x0, 391868352) start.
17-03-17 20:30:19.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:19.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:30:19.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37337 800
17-03-17 20:30:20.058 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:20.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:30:20.208 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:30:20.208 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:20.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199916248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:30:20.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:20.208 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:20.218 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:30:20.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:30:20.218 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:30:20.218 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 20:30:20.258 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:20.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:20.258 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:20.258 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:20.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:30:20.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:20.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:20.258 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:20.268 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:20.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 20:30:20.448 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:20.448 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:20.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37337 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-17 20:30:20.448 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170565
17-03-17 20:30:20.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17056 mm
17-03-17 20:30:20.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:20.448 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:30:20.458 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:30:20.458 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:20.458 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37260, sync = True, waitForSettling = False)
17-03-17 20:30:20.458 -07 000000541 INF: Z Motor: Moving to -0.170565 mm, started at -0.170130 mm, distance = -0.44 um
17-03-17 20:30:20.458 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:30:20.468 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:20.468 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:20.468 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:20.468 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:30:20.468 -07 000000541 INF: FPGA: Xmit ZDACW 37260\n [Z Motor]
17-03-17 20:30:20.468 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:30:20.478 -07 000000541 INF: FPGA: 'ZDACW 37260' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:30:20.478 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:20.488 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:20.488 -07 000000459 INF: FPGA: Recv ZDACR 37260
17-03-17 20:30:20.498 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:20.498 -07 000000541 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:30:20.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:30:20.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:30:20.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:20.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:30:20.638 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:20.638 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:30:20.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:30:20.638 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:20.648 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:20.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:30:20.848 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:30:20.848 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:30:20.888 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:20.888 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:30:20.898 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:20.898 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:20.898 -07 000000424 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:30:20.898 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 20:30:21.788 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:21.848 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:21.848 -07 000000541 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:30:21.858 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:21.858 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:21.878 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:21.878 -07 000000424 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:21.878 -07 000000424 INF: Y Motor: Moved to 65.7144 after 1425 ms (table move)
17-03-17 20:30:21.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170565 mm (DAC = 37260)
17-03-17 20:30:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.888 -07 000000424 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:30:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:30:21.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.888 -07 000000424 INF: FPGA: Recv ZSGSRD 35841
17-03-17 20:30:21.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35841
17-03-17 20:30:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.908 -07 000000424 INF: FPGA: Recv ZSGSRD 35843
17-03-17 20:30:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:30:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.928 -07 000000462 INF: FPGA: Recv ZSGSRD 35841
17-03-17 20:30:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.938 -07 000000626 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:30:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.948 -07 000000482 INF: FPGA: Recv ZSGSRD 35835
17-03-17 20:30:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.958 -07 000000482 INF: FPGA: Recv ZSGSRD 35837
17-03-17 20:30:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:21.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35842
17-03-17 20:30:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:21.978 -07 000000459 INF: FPGA: Recv ZPIEZORD 31902
17-03-17 20:30:21.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.7 V.
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35842 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35846 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35842, posNoise = 4, negNoise = 7
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: After move to -0.170565, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 103 ms (allowed 150 ms), total time = 1529 ms
17-03-17 20:30:21.988 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:22.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:30:22.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:22.038 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.170579963596131. ----------
17-03-17 20:30:22.038 -07 000000610 INF: Cycle	39	Tile	8	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:22.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37083, sync = True, waitForSettling = True)
17-03-17 20:30:22.038 -07 000000610 INF: Z Motor: Moving to -0.169755 mm, started at -0.170580 mm, distance = 0.82 um
17-03-17 20:30:22.038 -07 000000610 INF: FPGA: Xmit ZDACW 37083\n [Z Motor]
17-03-17 20:30:22.038 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:30:22.048 -07 000000610 INF: FPGA: 'ZDACW 37083' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:22.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:22.048 -07 000000462 INF: FPGA: Recv ZDACR 37083
17-03-17 20:30:22.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35717
17-03-17 20:30:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35716
17-03-17 20:30:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35721
17-03-17 20:30:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35714
17-03-17 20:30:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35719
17-03-17 20:30:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35715
17-03-17 20:30:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35714
17-03-17 20:30:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.278 -07 000000541 INF: FPGA: Recv ZSGSRD 35717
17-03-17 20:30:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.288 -07 000000424 INF: FPGA: Recv ZSGSRD 35715
17-03-17 20:30:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:22.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35719
17-03-17 20:30:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:22.308 -07 000000541 INF: FPGA: Recv ZPIEZORD 31713
17-03-17 20:30:22.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:22.318 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -8.8 V.
17-03-17 20:30:22.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35717 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35714 (-168.9 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:30:22.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35717, posNoise = 4, negNoise = 3
17-03-17 20:30:22.318 -07 000000610 INF: Z Motor: After move to -0.169755, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:22.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:30:22.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:22.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:22.318 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:22.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:22.318 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:22.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:22.318 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:22.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:22.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:30:22.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:22.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:22.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:22.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:22.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:22.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:30:22.328 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:22.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:22.338 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:30:22.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:30:22.338 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:22.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37260 150\n [Camera]
17-03-17 20:30:22.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:22.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:22.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:22.958 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:22.968 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:22.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:22.968 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:22.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:22.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:30:22.968 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:22.968 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:30:23.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37260 800
17-03-17 20:30:23.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:23.338 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:30:23.338 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:30:23.338 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:23.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 20:30:23.338 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 20:30:23.338 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:23.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:23.348 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:30:23.348 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:23.348 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:30:23.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:23.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:23.508 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:23.508 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:23.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:23.508 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:23.508 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:23.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:30:23.508 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:23.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:30:23.688 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:23.688 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:23.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37260 150' command took 2 ms to send, 1339 ms to get response, and 1349 ms overall
17-03-17 20:30:23.698 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170165
17-03-17 20:30:23.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17017 mm
17-03-17 20:30:23.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:23.698 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:30:23.698 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:30:23.698 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:23.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:30:23.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:30:23.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:23.888 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:30:23.888 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:30:23.888 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:23.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:23.888 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:23.888 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:30:23.898 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:30:23.908 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37173, sync = True, waitForSettling = False)
17-03-17 20:30:23.908 -07 000000459 INF: Z Motor: Moving to -0.170167 mm, started at -0.169777 mm, distance = -0.39 um
17-03-17 20:30:23.908 -07 000000459 INF: FPGA: Xmit ZDACW 37173\n [Z Motor]
17-03-17 20:30:23.908 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:30:23.908 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:30:23.908 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 210 ms overall
17-03-17 20:30:23.908 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:23.908 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:23.908 -07 000000012 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:30:23.918 -07 000000459 INF: FPGA: 'ZDACW 37173' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:23.918 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:23.928 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:23.928 -07 000000626 INF: FPGA: Recv ZDACR 37173
17-03-17 20:30:23.938 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:23.938 -07 000000459 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:30:24.288 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:30:24.288 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:30:24.328 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:24.328 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:30:24.338 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:24.338 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:24.338 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:30:24.338 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.189 mm/sec
17-03-17 20:30:24.908 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.012614,
17-03-17 20:30:25.288 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:25.288 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:30:25.298 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:25.298 -07 000000012 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:25.318 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:25.318 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:30:25.318 -07 000000012 INF: Y Motor: Moved to 66.5396 after 1619 ms (table move)
17-03-17 20:30:25.318 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170167 mm (DAC = 37173)
17-03-17 20:30:25.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.318 -07 000000569 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:30:25.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:25.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.328 -07 000000459 INF: FPGA: Recv ZSGSRD 35773
17-03-17 20:30:25.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.338 -07 000000433 INF: FPGA: Recv ZSGSRD 35779
17-03-17 20:30:25.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35790
17-03-17 20:30:25.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35784
17-03-17 20:30:25.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:30:25.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35779
17-03-17 20:30:25.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.388 -07 000000433 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:30:25.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.398 -07 000000569 INF: FPGA: Recv ZSGSRD 35774
17-03-17 20:30:25.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35777
17-03-17 20:30:25.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:25.418 -07 000000569 INF: FPGA: Recv ZPIEZORD 31841
17-03-17 20:30:25.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -8.7 V.
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35778 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35773 (-169.3 uncal um), Max = 35790 (-169.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35778, posNoise = 12, negNoise = 5
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: After move to -0.170167, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 104 ms (allowed 150 ms), total time = 1519 ms
17-03-17 20:30:25.428 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:25.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1778 ms
17-03-17 20:30:25.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:25.478 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.170168814019058. ----------
17-03-17 20:30:25.478 -07 000000610 INF: Cycle	39	Tile	9	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:25.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36996, sync = True, waitForSettling = True)
17-03-17 20:30:25.478 -07 000000610 INF: Z Motor: Moving to -0.169357 mm, started at -0.170169 mm, distance = 0.81 um
17-03-17 20:30:25.478 -07 000000610 INF: FPGA: Xmit ZDACW 36996\n [Z Motor]
17-03-17 20:30:25.478 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:30:25.488 -07 000000610 INF: FPGA: 'ZDACW 36996' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:25.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:25.488 -07 000000547 INF: FPGA: Recv ZDACR 36996
17-03-17 20:30:25.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35652
17-03-17 20:30:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:30:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35657
17-03-17 20:30:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35658
17-03-17 20:30:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.688 -07 000000512 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:30:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.698 -07 000000424 INF: FPGA: Recv ZSGSRD 35648
17-03-17 20:30:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35656
17-03-17 20:30:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.718 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-17 20:30:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35653
17-03-17 20:30:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:25.738 -07 000000424 INF: FPGA: Recv ZSGSRD 35652
17-03-17 20:30:25.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:25.748 -07 000000012 INF: FPGA: Recv ZPIEZORD 31653
17-03-17 20:30:25.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:25.758 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -8.8 V.
17-03-17 20:30:25.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35658 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:30:25.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 4, negNoise = 6
17-03-17 20:30:25.758 -07 000000610 INF: Z Motor: After move to -0.169357, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:25.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:30:25.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:25.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:25.758 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:25.758 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:25.758 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:25.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:25.758 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:25.758 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:25.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:25.758 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:25.758 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:30:25.758 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:25.768 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:25.768 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:25.768 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:25.768 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:25.778 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:25.778 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:30:25.778 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:30:25.778 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:30:25.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37173 150\n [Camera]
17-03-17 20:30:25.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:26.398 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:26.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:26.398 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:26.398 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:26.398 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 20:30:26.408 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:26.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:26.408 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:26.408 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:26.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:30:26.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37173 800
17-03-17 20:30:26.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:26.778 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:30:26.778 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:30:26.778 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:26.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:30:26.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:30:26.778 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:26.778 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:26.778 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:26.778 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:26.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:26.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:26.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:30:26.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:26.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:27.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:27.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:27.058 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:27.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:27.068 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:27.068 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:30:27.068 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:27.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:30:27.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:27.138 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:27.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37173 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:30:27.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:30:27.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.16937221171348. ------
17-03-17 20:30:27.138 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:27.138 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17619 mm
17-03-17 20:30:27.138 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:27.138 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:27.148 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:27.148 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38489, sync = True, waitForSettling = False)
17-03-17 20:30:27.148 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:30:27.148 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:30:27.148 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:30:27.148 -07 000000424 INF: Z Motor: Moving to -0.176191 mm, started at -0.169372 mm, distance = -6.82 um
17-03-17 20:30:27.158 -07 000000424 INF: FPGA: Xmit ZDACW 38489\n [Z Motor]
17-03-17 20:30:27.158 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:27.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:27.168 -07 000000424 INF: FPGA: 'ZDACW 38489' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:30:27.168 -07 000000012 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:30:27.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:30:27.178 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:27.178 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:27.178 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:27.178 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:30:27.178 -07 000000459 INF: FPGA: Recv ZDACR 38489
17-03-17 20:30:27.188 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:27.188 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:30:27.188 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:27.348 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:30:27.348 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:30:27.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:30:27.448 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:30:27.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:27.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:30:27.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:30:27.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:27.448 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:27.448 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:30:27.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:27.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:30:27.558 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:30:27.558 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 20:30:27.598 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:27.608 -07 000000626 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:30:27.608 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:30:27.608 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:27.608 -07 000000623 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:30:27.608 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 20:30:28.558 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:28.558 -07 000000626 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:30:28.568 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:28.568 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:28.588 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:28.588 -07 000000623 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:28.588 -07 000000623 INF: Y Motor: Moved to 67.3721 after 1442 ms (table move)
17-03-17 20:30:28.588 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176191 mm (DAC = 38489)
17-03-17 20:30:28.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36718
17-03-17 20:30:28.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:28.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.598 -07 000000623 INF: FPGA: Recv ZSGSRD 36709
17-03-17 20:30:28.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.608 -07 000000623 INF: FPGA: Recv ZSGSRD 36722
17-03-17 20:30:28.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.618 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.618 -07 000000626 INF: FPGA: Recv ZSGSRD 36721
17-03-17 20:30:28.628 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.628 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.628 -07 000000623 INF: FPGA: Recv ZSGSRD 36718
17-03-17 20:30:28.638 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.638 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.638 -07 000000626 INF: FPGA: Recv ZSGSRD 36717
17-03-17 20:30:28.648 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.648 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.648 -07 000000623 INF: FPGA: Recv ZSGSRD 36703
17-03-17 20:30:28.658 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36716
17-03-17 20:30:28.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.668 -07 000000623 INF: FPGA: Recv ZSGSRD 36720
17-03-17 20:30:28.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:28.678 -07 000000576 INF: FPGA: Recv ZSGSRD 36711
17-03-17 20:30:28.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.688 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:28.688 -07 000000576 INF: FPGA: Recv ZPIEZORD 33069
17-03-17 20:30:28.698 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.1 V.
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36716 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36718 (-175.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36703 (-175.2 uncal um), Max = 36722 (-175.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36716, posNoise = 6, negNoise = 13
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: After move to -0.176191, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:30:28.698 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:28.748 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 20:30:28.748 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:28.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:28.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:28.748 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:28.748 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:28.748 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:30:28.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:28.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:28.748 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:30:28.758 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:30:28.758 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:30:28.768 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:30:28.768 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:30:28.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:30:28.818 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:30:29.018 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:30:29.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:30:29.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:30:29.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092260000, 0x0, 559484976) start.
17-03-17 20:30:29.048 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:30:29.058 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:30:29.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:30:29.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092260000, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:30:29.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:29.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:30:29.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:30:29.158 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:29.158 -07 000000433 INF: Autofocus start
17-03-17 20:30:29.158 -07 000000433 INF: MeasureProfile start
17-03-17 20:30:29.158 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:29.168 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:29.168 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:30:29.168 -07 000000433 INF: MeasureProfile done
17-03-17 20:30:29.168 -07 000000433 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:30:29.168 -07 000000433 INF: Autofocus finished
17-03-17 20:30:29.368 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:30:29.368 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 20:30:29.368 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.17619472500803. ----------
17-03-17 20:30:29.368 -07 000000610 INF: Cycle	39	Tile	10	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:29.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37040, sync = True, waitForSettling = True)
17-03-17 20:30:29.378 -07 000000610 INF: Z Motor: Moving to -0.169558 mm, started at -0.176195 mm, distance = 6.64 um
17-03-17 20:30:29.378 -07 000000610 INF: FPGA: Xmit ZDACW 37040\n [Z Motor]
17-03-17 20:30:29.378 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:30:29.388 -07 000000610 INF: FPGA: 'ZDACW 37040' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:29.388 -07 000000576 INF: FPGA: Recv ZDACR 37040
17-03-17 20:30:29.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.548 -07 000000626 INF: FPGA: Recv ZSGSRD 35693
17-03-17 20:30:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.558 -07 000000462 INF: FPGA: Recv ZSGSRD 35691
17-03-17 20:30:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:30:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35681
17-03-17 20:30:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35690
17-03-17 20:30:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.598 -07 000000482 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:30:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.608 -07 000000623 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:30:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.618 -07 000000482 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:30:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.628 -07 000000433 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:30:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:29.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:30:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:29.648 -07 000000462 INF: FPGA: Recv ZPIEZORD 31674
17-03-17 20:30:29.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:29.658 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.9 V.
17-03-17 20:30:29.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35685 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35681 (-168.7 uncal um), Max = 35693 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:29.658 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 7, negNoise = 5
17-03-17 20:30:29.658 -07 000000610 INF: Z Motor: After move to -0.169558, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:29.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:30:29.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:29.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:29.658 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:29.658 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:29.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:29.658 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:29.658 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:29.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:29.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:29.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:29.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:29.658 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:29.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:30:29.658 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:29.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:30:29.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:29.678 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:30:29.678 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:30:29.678 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:30:29.678 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:29.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37216 150\n [Camera]
17-03-17 20:30:29.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:30.268 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.000345,
17-03-17 20:30:30.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:30.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:30.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:30.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:30.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:30.298 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:30.408 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:30.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:30:30.418 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:30.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:30:30.488 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37216 800
17-03-17 20:30:30.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:30.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:30:30.778 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:30:30.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:30.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:30:30.788 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:30:30.788 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:30.788 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:30.788 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-17 20:30:30.788 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:30.798 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 20:30:30.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:30.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:30.838 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:30.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:30.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:30.848 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:30.848 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:30.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1106936080, 0x0, 418435064) start.
17-03-17 20:30:30.848 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:30.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:30:31.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:31.028 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:31.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37216 150' command took 2 ms to send, 1337 ms to get response, and 1349 ms overall
17-03-17 20:30:31.028 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169997
17-03-17 20:30:31.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17000 mm
17-03-17 20:30:31.038 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:31.038 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:30:31.038 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:30:31.038 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:31.038 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37136, sync = True, waitForSettling = False)
17-03-17 20:30:31.038 -07 000000482 INF: Z Motor: Moving to -0.169998 mm, started at -0.169578 mm, distance = -0.42 um
17-03-17 20:30:31.038 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:30:31.048 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:31.048 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:31.048 -07 000000482 INF: FPGA: Xmit ZDACW 37136\n [Z Motor]
17-03-17 20:30:31.048 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:30:31.048 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:31.048 -07 000000569 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:30:31.058 -07 000000482 INF: FPGA: 'ZDACW 37136' command took 4 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:30:31.058 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:31.058 -07 000000623 INF: FPGA: Recv ZDACR 37136
17-03-17 20:30:31.068 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:31.068 -07 000000482 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 20:30:31.068 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:31.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1106936080, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:30:31.228 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:30:31.228 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:31.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:30:31.228 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:30:31.228 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:31.238 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:31.238 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:31.238 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:30:31.238 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:30:31.438 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:30:31.438 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:30:31.478 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:31.478 -07 000000459 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:30:31.488 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:31.488 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:31.488 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:30:31.488 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.841 mm, average velocity = 2.155 mm/sec
17-03-17 20:30:31.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:31.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:32.438 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:32.438 -07 000000459 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:30:32.448 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.448 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:32.468 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:32.468 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:32.468 -07 000000569 INF: Y Motor: Moved to 68.2051 after 1425 ms (table move)
17-03-17 20:30:32.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169998 mm (DAC = 37136)
17-03-17 20:30:32.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:30:32.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:30:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.478 -07 000000459 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:30:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35758
17-03-17 20:30:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.498 -07 000000424 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:30:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.508 -07 000000569 INF: FPGA: Recv ZSGSRD 35758
17-03-17 20:30:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.518 -07 000000424 INF: FPGA: Recv ZSGSRD 35749
17-03-17 20:30:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.528 -07 000000569 INF: FPGA: Recv ZSGSRD 35745
17-03-17 20:30:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.538 -07 000000569 INF: FPGA: Recv ZSGSRD 35752
17-03-17 20:30:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.548 -07 000000459 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:30:32.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.558 -07 000000459 INF: FPGA: Recv ZSGSRD 35757
17-03-17 20:30:32.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:32.568 -07 000000569 INF: FPGA: Recv ZPIEZORD 31818
17-03-17 20:30:32.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.7 V.
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35753 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35753 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35745 (-169.1 uncal um), Max = 35758 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35753, posNoise = 5, negNoise = 8
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: After move to -0.169998, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:30:32.578 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:32.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:30:32.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:32.628 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.170008208715514. ----------
17-03-17 20:30:32.628 -07 000000610 INF: Cycle	39	Tile	11	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:32.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36959, sync = True, waitForSettling = True)
17-03-17 20:30:32.628 -07 000000610 INF: Z Motor: Moving to -0.169187 mm, started at -0.170008 mm, distance = 0.82 um
17-03-17 20:30:32.628 -07 000000610 INF: FPGA: Xmit ZDACW 36959\n [Z Motor]
17-03-17 20:30:32.628 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:30:32.638 -07 000000610 INF: FPGA: 'ZDACW 36959' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:32.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:32.638 -07 000000569 INF: FPGA: Recv ZDACR 36959
17-03-17 20:30:32.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.798 -07 000000569 INF: FPGA: Recv ZSGSRD 35630
17-03-17 20:30:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:32.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.808 -07 000000424 INF: FPGA: Recv ZSGSRD 35625
17-03-17 20:30:32.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35630
17-03-17 20:30:32.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35627
17-03-17 20:30:32.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.838 -07 000000012 INF: FPGA: Recv ZSGSRD 35631
17-03-17 20:30:32.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35627
17-03-17 20:30:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35624
17-03-17 20:30:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.868 -07 000000569 INF: FPGA: Recv ZSGSRD 35629
17-03-17 20:30:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.878 -07 000000012 INF: FPGA: Recv ZSGSRD 35625
17-03-17 20:30:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:32.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35627
17-03-17 20:30:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:32.898 -07 000000459 INF: FPGA: Recv ZPIEZORD 31646
17-03-17 20:30:32.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:32.908 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.8 V.
17-03-17 20:30:32.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35628 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35627 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35624 (-168.3 uncal um), Max = 35631 (-168.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:32.908 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35628, posNoise = 3, negNoise = 4
17-03-17 20:30:32.908 -07 000000610 INF: Z Motor: After move to -0.169187, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:32.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:30:32.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:32.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:32.908 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:32.908 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:32.908 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:32.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:32.908 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:32.908 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:32.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:32.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:32.908 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:32.908 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:32.918 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:30:32.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:32.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:32.918 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:32.928 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:32.928 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:32.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:32.928 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:32.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37136 150\n [Camera]
17-03-17 20:30:33.128 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:33.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:33.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:33.548 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:33.548 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:33.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:33.548 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:33.558 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:33.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:30:33.558 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:33.558 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:30:33.738 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37136 800
17-03-17 20:30:33.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:33.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:30:33.928 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:30:33.928 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:33.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:33.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:33.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:30:33.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:30:33.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:33.938 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:33.948 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:30:34.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:34.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:34.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:34.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:34.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:34.098 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:34.098 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:34.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:30:34.098 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:34.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:30:34.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:34.288 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:34.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37136 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:30:34.288 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169736
17-03-17 20:30:34.288 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16974 mm
17-03-17 20:30:34.288 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:34.288 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:30:34.288 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:30:34.288 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37079, sync = True, waitForSettling = False)
17-03-17 20:30:34.288 -07 000000424 INF: Z Motor: Moving to -0.169737 mm, started at -0.169205 mm, distance = -0.53 um
17-03-17 20:30:34.288 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:34.288 -07 000000012 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:30:34.298 -07 000000424 INF: FPGA: Xmit ZDACW 37079\n [Z Motor]
17-03-17 20:30:34.298 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:34.298 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:34.298 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:34.298 -07 000000541 INF: Y Motor: Moving 1340 steps-15
17-03-17 20:30:34.298 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:34.308 -07 000000424 INF: FPGA: 'ZDACW 37079' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:30:34.308 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:34.308 -07 000000512 INF: FPGA: Recv ZDACR 37079
17-03-17 20:30:34.318 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:34.318 -07 000000424 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:30:34.318 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:34.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:30:34.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:30:34.488 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:34.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:30:34.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:30:34.488 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:34.488 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:34.488 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:30:34.488 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:34.498 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:30:34.688 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:30:34.688 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 20:30:34.728 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:34.728 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:30:34.738 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:34.738 -07 000000541 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:34.738 -07 000000541 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:30:34.738 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 20:30:35.688 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:35.688 -07 000000569 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:30:35.698 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:35.698 -07 000000541 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:35.718 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:35.718 -07 000000541 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:35.718 -07 000000541 INF: Y Motor: Moved to 69.0273 after 1426 ms (table move)
17-03-17 20:30:35.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169737 mm (DAC = 37079)
17-03-17 20:30:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.728 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.99219,
17-03-17 20:30:35.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35709
17-03-17 20:30:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:30:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35713
17-03-17 20:30:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.758 -07 000000480 INF: FPGA: Recv ZSGSRD 35712
17-03-17 20:30:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.778 -07 000000424 INF: FPGA: Recv ZSGSRD 35713
17-03-17 20:30:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.788 -07 000000459 INF: FPGA: Recv ZSGSRD 35708
17-03-17 20:30:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:35.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.818 -07 000000626 INF: FPGA: Recv ZSGSRD 35710
17-03-17 20:30:35.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:30:35.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.828 -07 000000512 INF: FPGA: Recv ZSGSRD 35714
17-03-17 20:30:35.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.838 -07 000000512 INF: FPGA: Recv ZSGSRD 35716
17-03-17 20:30:35.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35708
17-03-17 20:30:35.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:35.858 -07 000000512 INF: FPGA: Recv ZSGSRD 35710
17-03-17 20:30:35.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:35.868 -07 000000626 INF: FPGA: Recv ZPIEZORD 31744
17-03-17 20:30:35.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -8.8 V.
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35711 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35708 (-168.8 uncal um), Max = 35716 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 5, negNoise = 3
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: After move to -0.169737, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 155 ms (allowed 150 ms), total time = 1583 ms
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 20:30:35.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 20:30:35.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:35.878 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.169738391805561. ----------
17-03-17 20:30:35.878 -07 000000610 INF: Cycle	39	Tile	12	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36902, sync = True, waitForSettling = True)
17-03-17 20:30:35.878 -07 000000610 INF: Z Motor: Moving to -0.168927 mm, started at -0.169738 mm, distance = 0.81 um
17-03-17 20:30:35.878 -07 000000610 INF: FPGA: Xmit ZDACW 36902\n [Z Motor]
17-03-17 20:30:35.878 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:30:35.888 -07 000000610 INF: FPGA: 'ZDACW 36902' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:30:35.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:35.888 -07 000000626 INF: FPGA: Recv ZDACR 36902
17-03-17 20:30:35.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:35.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.048 -07 000000512 INF: FPGA: Recv ZSGSRD 35584
17-03-17 20:30:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.058 -07 000000626 INF: FPGA: Recv ZSGSRD 35588
17-03-17 20:30:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.068 -07 000000512 INF: FPGA: Recv ZSGSRD 35592
17-03-17 20:30:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35583
17-03-17 20:30:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35587
17-03-17 20:30:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35590
17-03-17 20:30:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.108 -07 000000512 INF: FPGA: Recv ZSGSRD 35589
17-03-17 20:30:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.118 -07 000000626 INF: FPGA: Recv ZSGSRD 35584
17-03-17 20:30:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.128 -07 000000512 INF: FPGA: Recv ZSGSRD 35580
17-03-17 20:30:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:36.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35592
17-03-17 20:30:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:36.148 -07 000000626 INF: FPGA: Recv ZPIEZORD 31591
17-03-17 20:30:36.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:36.158 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -8.8 V.
17-03-17 20:30:36.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35587 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35592 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:30:36.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35587, posNoise = 5, negNoise = 7
17-03-17 20:30:36.158 -07 000000610 INF: Z Motor: After move to -0.168927, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:36.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:30:36.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:36.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:36.158 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:36.158 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:36.158 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:36.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:36.158 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:36.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:36.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:36.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:36.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:36.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:36.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:36.168 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:36.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:30:36.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:36.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:36.178 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:30:36.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:30:36.178 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:36.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37079 150\n [Camera]
17-03-17 20:30:36.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:36.788 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:36.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:36.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:36.798 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:36.798 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:36.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:30:36.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:36.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:36.808 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:36.808 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:36.808 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 20:30:36.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37079 800
17-03-17 20:30:37.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:37.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:30:37.188 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:30:37.188 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:37.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:37.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:30:37.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:30:37.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:30:37.188 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:37.198 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:37.198 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:30:37.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:37.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:37.338 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:37.338 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:37.338 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:30:37.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:37.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:37.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:37.348 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:37.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:30:37.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:37.538 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:37.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37079 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:30:37.538 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169301
17-03-17 20:30:37.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16930 mm
17-03-17 20:30:37.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:37.538 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:30:37.538 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:30:37.538 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:37.538 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 36984, sync = True, waitForSettling = False)
17-03-17 20:30:37.538 -07 000000433 INF: Z Motor: Moving to -0.169302 mm, started at -0.168942 mm, distance = -0.36 um
17-03-17 20:30:37.538 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:30:37.548 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:37.548 -07 000000462 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:37.548 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:37.548 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:30:37.548 -07 000000433 INF: FPGA: Xmit ZDACW 36984\n [Z Motor]
17-03-17 20:30:37.548 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:30:37.558 -07 000000433 INF: FPGA: 'ZDACW 36984' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:30:37.558 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:37.568 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:37.568 -07 000000482 INF: FPGA: Recv ZDACR 36984
17-03-17 20:30:37.578 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:37.578 -07 000000433 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:30:37.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:30:37.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:30:37.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:37.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:30:37.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:30:37.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:37.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:37.728 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:30:37.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:37.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:30:37.928 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:30:37.928 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:30:37.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:37.968 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:30:37.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:37.978 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:37.978 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:30:37.978 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-17 20:30:38.928 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:38.928 -07 000000482 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:30:38.938 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:38.938 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:38.958 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:38.958 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:30:38.958 -07 000000462 INF: Y Motor: Moved to 69.8638 after 1419 ms (table move)
17-03-17 20:30:38.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169302 mm (DAC = 36984)
17-03-17 20:30:38.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:38.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35648
17-03-17 20:30:38.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:30:38.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:38.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35644
17-03-17 20:30:38.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:30:38.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:38.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35646
17-03-17 20:30:38.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:38.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:38.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35645
17-03-17 20:30:38.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:38.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:38.998 -07 000000576 INF: FPGA: Recv ZSGSRD 35647
17-03-17 20:30:39.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35647
17-03-17 20:30:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35636
17-03-17 20:30:39.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.028 -07 000000462 INF: FPGA: Recv ZSGSRD 35641
17-03-17 20:30:39.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.038 -07 000000576 INF: FPGA: Recv ZSGSRD 35642
17-03-17 20:30:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.048 -07 000000462 INF: FPGA: Recv ZSGSRD 35647
17-03-17 20:30:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:39.058 -07 000000576 INF: FPGA: Recv ZPIEZORD 31651
17-03-17 20:30:39.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -8.8 V.
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35644 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35636 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35644, posNoise = 4, negNoise = 8
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: After move to -0.169302, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 103 ms (allowed 150 ms), total time = 1525 ms
17-03-17 20:30:39.068 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:39.118 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 20:30:39.118 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:39.118 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.169307969592063. ----------
17-03-17 20:30:39.118 -07 000000610 INF: Cycle	39	Tile	13	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:39.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36807, sync = True, waitForSettling = True)
17-03-17 20:30:39.118 -07 000000610 INF: Z Motor: Moving to -0.168492 mm, started at -0.169308 mm, distance = 0.82 um
17-03-17 20:30:39.118 -07 000000610 INF: FPGA: Xmit ZDACW 36807\n [Z Motor]
17-03-17 20:30:39.118 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:30:39.128 -07 000000610 INF: FPGA: 'ZDACW 36807' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:39.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:39.128 -07 000000541 INF: FPGA: Recv ZDACR 36807
17-03-17 20:30:39.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35519
17-03-17 20:30:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35524
17-03-17 20:30:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:30:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.318 -07 000000541 INF: FPGA: Recv ZSGSRD 35513
17-03-17 20:30:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.328 -07 000000541 INF: FPGA: Recv ZSGSRD 35520
17-03-17 20:30:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.338 -07 000000541 INF: FPGA: Recv ZSGSRD 35515
17-03-17 20:30:39.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35519
17-03-17 20:30:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.358 -07 000000541 INF: FPGA: Recv ZSGSRD 35517
17-03-17 20:30:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35527
17-03-17 20:30:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:39.378 -07 000000541 INF: FPGA: Recv ZSGSRD 35524
17-03-17 20:30:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:39.388 -07 000000541 INF: FPGA: Recv ZPIEZORD 31495
17-03-17 20:30:39.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:39.398 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.9 V.
17-03-17 20:30:39.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35519 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35519 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35513 (-167.6 uncal um), Max = 35527 (-167.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:30:39.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35519, posNoise = 8, negNoise = 6
17-03-17 20:30:39.398 -07 000000610 INF: Z Motor: After move to -0.168492, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:39.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:30:39.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:39.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:39.398 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:39.398 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:39.398 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:39.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:39.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:39.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:39.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:30:39.408 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:39.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:30:39.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:30:39.428 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:39.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:39.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:30:39.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:39.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:30:39.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:39.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:39.448 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:30:39.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36984 150\n [Camera]
17-03-17 20:30:39.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:40.058 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:40.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:40.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:40.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:40.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:30:40.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:30:40.448 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:30:40.448 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:40.448 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:30:40.448 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:30:40.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:40.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36984 800
17-03-17 20:30:40.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:40.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:40.458 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:40.458 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:40.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:30:40.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:30:40.838 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:30:40.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:40.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:40.848 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:30:40.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:40.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:40.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:40.858 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:40.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36984 150' command took 2 ms to send, 1403 ms to get response, and 1411 ms overall
17-03-17 20:30:40.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:40.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:40.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:40.858 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:40.858 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:30:40.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:30:40.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168504943074342. ------
17-03-17 20:30:41.238 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:30:41.238 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:30:41.238 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:41.238 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:41.238 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:30:41.248 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.98264,
17-03-17 20:30:41.258 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:41.258 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17487 mm
17-03-17 20:30:41.258 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:41.258 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:41.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:41.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:30:41.378 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:30:41.378 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:30:41.378 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38199, sync = True, waitForSettling = False)
17-03-17 20:30:41.378 -07 000000012 INF: Z Motor: Moving to -0.174864 mm, started at -0.168505 mm, distance = -6.36 um
17-03-17 20:30:41.378 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:41.378 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 123 ms overall
17-03-17 20:30:41.388 -07 000000012 INF: FPGA: Xmit ZDACW 38199\n [Z Motor]
17-03-17 20:30:41.388 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:30:41.398 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:41.398 -07 000000012 INF: FPGA: 'ZDACW 38199' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:30:41.398 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:30:41.408 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:30:41.408 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:30:41.408 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:41.408 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:41.408 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:30:41.428 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:41.428 -07 000000569 INF: FPGA: Recv ZDACR 38199
17-03-17 20:30:41.438 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:41.438 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:30:41.438 -07 000000012 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 20:30:41.608 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:30:41.608 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 230 ms overall
17-03-17 20:30:41.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:30:41.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:30:41.638 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:41.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:41.648 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:30:41.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:41.808 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:30:41.808 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 20:30:41.848 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:41.858 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:30:41.858 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:30:41.858 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:41.858 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:30:41.858 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.839 mm, average velocity = 2.061 mm/sec
17-03-17 20:30:42.808 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:42.808 -07 000000541 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:30:42.818 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:42.818 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:42.838 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:42.838 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:30:42.838 -07 000000462 INF: Y Motor: Moved to 70.6890 after 1460 ms (table move)
17-03-17 20:30:42.838 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174864 mm (DAC = 38199)
17-03-17 20:30:42.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.838 -07 000000433 INF: FPGA: Recv ZSGSRD 36513
17-03-17 20:30:42.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:42.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.848 -07 000000459 INF: FPGA: Recv ZSGSRD 36511
17-03-17 20:30:42.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.858 -07 000000012 INF: FPGA: Recv ZSGSRD 36510
17-03-17 20:30:42.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.868 -07 000000547 INF: FPGA: Recv ZSGSRD 36512
17-03-17 20:30:42.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.878 -07 000000569 INF: FPGA: Recv ZSGSRD 36514
17-03-17 20:30:42.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.888 -07 000000459 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:30:42.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36513
17-03-17 20:30:42.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36508
17-03-17 20:30:42.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.918 -07 000000459 INF: FPGA: Recv ZSGSRD 36507
17-03-17 20:30:42.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:42.928 -07 000000424 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:30:42.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.938 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:42.938 -07 000000569 INF: FPGA: Recv ZPIEZORD 32835
17-03-17 20:30:42.948 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.1 V.
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36507 (-174.0 uncal um), Max = 36514 (-174.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 3, negNoise = 4
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: After move to -0.174864, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: Settle wait time = 1463 ms, measure time = 104 ms (allowed 150 ms), total time = 1567 ms
17-03-17 20:30:42.948 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:42.998 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-17 20:30:42.998 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:42.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:42.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:42.998 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:42.998 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:30:42.998 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:42.998 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:42.998 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:42.998 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:30:43.008 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:30:43.008 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:30:43.008 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:30:43.008 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:30:43.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:30:43.058 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:30:43.258 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:30:43.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:30:43.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:30:43.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:30:43.298 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:30:43.298 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:30:43.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:30:43.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:30:43.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:43.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:30:43.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:30:43.398 -07 000000424 INF: Autofocus start
17-03-17 20:30:43.398 -07 000000424 INF: MeasureProfile start
17-03-17 20:30:43.398 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:43.398 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:43.408 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:43.408 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:30:43.408 -07 000000424 INF: MeasureProfile done
17-03-17 20:30:43.408 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:30:43.408 -07 000000424 INF: Autofocus finished
17-03-17 20:30:44.238 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:30:44.238 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 820 ms to get response, and 829 ms overall
17-03-17 20:30:44.238 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174877761518969. ----------
17-03-17 20:30:44.238 -07 000000610 INF: Cycle	39	Tile	14	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:44.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36732, sync = True, waitForSettling = True)
17-03-17 20:30:44.238 -07 000000610 INF: Z Motor: Moving to -0.168148 mm, started at -0.174878 mm, distance = 6.73 um
17-03-17 20:30:44.238 -07 000000610 INF: FPGA: Xmit ZDACW 36732\n [Z Motor]
17-03-17 20:30:44.248 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:30:44.248 -07 000000610 INF: FPGA: 'ZDACW 36732' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:30:44.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:44.258 -07 000000547 INF: FPGA: Recv ZDACR 36732
17-03-17 20:30:44.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:44.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.418 -07 000000424 INF: FPGA: Recv ZSGSRD 35464
17-03-17 20:30:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35473
17-03-17 20:30:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.438 -07 000000462 INF: FPGA: Recv ZSGSRD 35460
17-03-17 20:30:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35462
17-03-17 20:30:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.458 -07 000000012 INF: FPGA: Recv ZSGSRD 35469
17-03-17 20:30:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.468 -07 000000012 INF: FPGA: Recv ZSGSRD 35463
17-03-17 20:30:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.478 -07 000000480 INF: FPGA: Recv ZSGSRD 35464
17-03-17 20:30:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.488 -07 000000424 INF: FPGA: Recv ZSGSRD 35464
17-03-17 20:30:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.498 -07 000000547 INF: FPGA: Recv ZSGSRD 35469
17-03-17 20:30:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:44.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35458
17-03-17 20:30:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:44.518 -07 000000462 INF: FPGA: Recv ZPIEZORD 31447
17-03-17 20:30:44.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:44.528 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -8.9 V.
17-03-17 20:30:44.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35465 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35458 (-167.2 uncal um), Max = 35473 (-167.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:30:44.528 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35465, posNoise = 8, negNoise = 7
17-03-17 20:30:44.528 -07 000000610 INF: Z Motor: After move to -0.168148, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:44.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 20:30:44.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:44.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:44.528 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:44.528 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:44.528 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:44.528 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:44.528 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:44.528 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:44.528 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:44.528 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:44.528 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:44.528 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:44.538 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:44.538 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:44.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:44.538 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:44.538 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:30:44.538 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:30:44.548 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:30:44.548 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:30:44.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36909 150\n [Camera]
17-03-17 20:30:44.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:45.168 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:45.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:45.168 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:45.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:45.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:45.168 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:45.168 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:45.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:30:45.178 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:45.178 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:30:45.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36909 800
17-03-17 20:30:45.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:45.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:30:45.558 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:30:45.558 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:45.558 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:45.558 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:30:45.558 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:30:45.558 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:45.568 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:45.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:30:45.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:30:45.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:45.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:45.708 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:45.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:45.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:45.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:45.828 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:45.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:30:45.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:45.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 20:30:45.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:45.898 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:45.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36909 150' command took 2 ms to send, 1345 ms to get response, and 1349 ms overall
17-03-17 20:30:45.898 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168769
17-03-17 20:30:45.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16877 mm
17-03-17 20:30:45.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:45.908 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:30:45.908 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:30:45.908 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:45.908 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 36868, sync = True, waitForSettling = False)
17-03-17 20:30:45.908 -07 000000547 INF: Z Motor: Moving to -0.168771 mm, started at -0.168158 mm, distance = -0.61 um
17-03-17 20:30:45.908 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:30:45.918 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:45.918 -07 000000541 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:45.918 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:45.918 -07 000000541 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:30:45.918 -07 000000547 INF: FPGA: Xmit ZDACW 36868\n [Z Motor]
17-03-17 20:30:45.918 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:30:45.928 -07 000000547 INF: FPGA: 'ZDACW 36868' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:45.928 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:45.928 -07 000000459 INF: FPGA: Recv ZDACR 36868
17-03-17 20:30:45.938 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:45.938 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:45.938 -07 000000547 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 20:30:46.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:30:46.228 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:30:46.228 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:46.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:30:46.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:30:46.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:46.228 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:46.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 20:30:46.228 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:46.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 20:30:46.308 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:30:46.308 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:30:46.348 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:46.348 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:30:46.358 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:46.358 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:46.358 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:30:46.358 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:30:46.778 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.003063,
17-03-17 20:30:46.788 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:47.308 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:47.308 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:30:47.318 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.318 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:47.338 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:47.338 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:47.338 -07 000000541 INF: Y Motor: Moved to 71.5190 after 1433 ms (table move)
17-03-17 20:30:47.338 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168771 mm (DAC = 36868)
17-03-17 20:30:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.338 -07 000000541 INF: FPGA: Recv ZSGSRD 35561
17-03-17 20:30:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.348 -07 000000462 INF: FPGA: Recv ZSGSRD 35554
17-03-17 20:30:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.358 -07 000000462 INF: FPGA: Recv ZSGSRD 35565
17-03-17 20:30:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35557
17-03-17 20:30:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35563
17-03-17 20:30:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.388 -07 000000012 INF: FPGA: Recv ZSGSRD 35566
17-03-17 20:30:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.398 -07 000000462 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:30:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:30:47.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.418 -07 000000569 INF: FPGA: Recv ZSGSRD 35557
17-03-17 20:30:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.428 -07 000000547 INF: FPGA: Recv ZSGSRD 35557
17-03-17 20:30:47.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:47.438 -07 000000569 INF: FPGA: Recv ZPIEZORD 31581
17-03-17 20:30:47.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -8.8 V.
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35560 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35559 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35554 (-167.9 uncal um), Max = 35566 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35560, posNoise = 6, negNoise = 6
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: After move to -0.168771, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:30:47.448 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:47.498 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:30:47.498 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:47.498 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.168768335772155. ----------
17-03-17 20:30:47.498 -07 000000610 INF: Cycle	39	Tile	15	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:47.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36691, sync = True, waitForSettling = True)
17-03-17 20:30:47.498 -07 000000610 INF: Z Motor: Moving to -0.167961 mm, started at -0.168768 mm, distance = 0.81 um
17-03-17 20:30:47.498 -07 000000610 INF: FPGA: Xmit ZDACW 36691\n [Z Motor]
17-03-17 20:30:47.498 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:30:47.508 -07 000000610 INF: FPGA: 'ZDACW 36691' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:47.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:47.508 -07 000000459 INF: FPGA: Recv ZDACR 36691
17-03-17 20:30:47.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.668 -07 000000012 INF: FPGA: Recv ZSGSRD 35428
17-03-17 20:30:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:30:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.688 -07 000000547 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:30:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35439
17-03-17 20:30:47.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:30:47.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.718 -07 000000424 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:30:47.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.728 -07 000000459 INF: FPGA: Recv ZSGSRD 35435
17-03-17 20:30:47.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35438
17-03-17 20:30:47.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.748 -07 000000569 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:30:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:47.758 -07 000000547 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:30:47.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:47.768 -07 000000424 INF: FPGA: Recv ZPIEZORD 31398
17-03-17 20:30:47.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:47.778 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -8.9 V.
17-03-17 20:30:47.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35435 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35434 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35428 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:30:47.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35435, posNoise = 6, negNoise = 7
17-03-17 20:30:47.778 -07 000000610 INF: Z Motor: After move to -0.167961, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:47.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:30:47.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:47.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:47.778 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:47.778 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:47.778 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:47.778 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:47.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:47.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:47.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:30:47.778 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:47.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:47.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:47.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:30:47.788 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:47.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:47.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:47.788 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:30:47.788 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:30:47.798 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:30:47.798 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:30:47.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36868 150\n [Camera]
17-03-17 20:30:47.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:48.408 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-17 20:30:48.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-17 20:30:48.408 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:48.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:30:48.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:30:48.418 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:48.418 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:48.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:30:48.418 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:48.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:30:48.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36868 800
17-03-17 20:30:48.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:48.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:30:48.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:30:48.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:48.798 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:30:48.798 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:30:48.798 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:48.798 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:48.798 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:30:48.798 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:48.808 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:30:48.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:48.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:48.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:48.958 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:48.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:48.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:48.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:48.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:30:48.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:48.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:30:49.148 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:49.148 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:49.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36868 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-17 20:30:49.148 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167985
17-03-17 20:30:49.148 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16798 mm
17-03-17 20:30:49.148 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:49.148 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36696, sync = True, waitForSettling = False)
17-03-17 20:30:49.148 -07 000000462 INF: Z Motor: Moving to -0.167984 mm, started at -0.167965 mm, distance = -0.02 um
17-03-17 20:30:49.148 -07 000000462 INF: FPGA: Xmit ZDACW 36696\n [Z Motor]
17-03-17 20:30:49.148 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:30:49.148 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:30:49.158 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:49.158 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:30:49.158 -07 000000462 INF: FPGA: 'ZDACW 36696' command took 2 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:30:49.158 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:30:49.168 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:49.168 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:49.168 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:49.168 -07 000000459 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:30:49.168 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:49.168 -07 000000547 INF: FPGA: Recv ZDACR 36696
17-03-17 20:30:49.178 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:30:49.178 -07 000000462 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:30:49.178 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:49.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:30:49.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:30:49.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:49.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:30:49.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:30:49.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:49.358 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:49.358 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:30:49.358 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:49.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:30:49.548 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:30:49.548 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:30:49.588 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:49.588 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:30:49.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:49.598 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:49.598 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:30:49.598 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 20:30:50.548 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:50.548 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:30:50.558 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.558 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:50.578 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:50.578 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:50.578 -07 000000459 INF: Y Motor: Moved to 72.3496 after 1423 ms (table move)
17-03-17 20:30:50.578 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167984 mm (DAC = 36696)
17-03-17 20:30:50.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.578 -07 000000459 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:30:50.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:50.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.588 -07 000000459 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:30:50.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.598 -07 000000433 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:30:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.608 -07 000000433 INF: FPGA: Recv ZSGSRD 35445
17-03-17 20:30:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.618 -07 000000459 INF: FPGA: Recv ZSGSRD 35442
17-03-17 20:30:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.628 -07 000000012 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:30:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.638 -07 000000433 INF: FPGA: Recv ZSGSRD 35440
17-03-17 20:30:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35437
17-03-17 20:30:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:30:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.668 -07 000000433 INF: FPGA: Recv ZSGSRD 35434
17-03-17 20:30:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:50.678 -07 000000547 INF: FPGA: Recv ZPIEZORD 31385
17-03-17 20:30:50.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -8.9 V.
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35439 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35434 (-167.1 uncal um), Max = 35445 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35439, posNoise = 6, negNoise = 5
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: After move to -0.167984, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:30:50.688 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:50.738 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:30:50.738 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:50.738 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.167991006103002. ----------
17-03-17 20:30:50.738 -07 000000610 INF: Cycle	39	Tile	16	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:50.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36520, sync = True, waitForSettling = True)
17-03-17 20:30:50.738 -07 000000610 INF: Z Motor: Moving to -0.167178 mm, started at -0.167991 mm, distance = 0.81 um
17-03-17 20:30:50.738 -07 000000610 INF: FPGA: Xmit ZDACW 36520\n [Z Motor]
17-03-17 20:30:50.738 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:30:50.748 -07 000000610 INF: FPGA: 'ZDACW 36520' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:50.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:50.748 -07 000000012 INF: FPGA: Recv ZDACR 36520
17-03-17 20:30:50.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:50.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.908 -07 000000480 INF: FPGA: Recv ZSGSRD 35313
17-03-17 20:30:50.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:50.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.918 -07 000000433 INF: FPGA: Recv ZSGSRD 35319
17-03-17 20:30:50.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.928 -07 000000012 INF: FPGA: Recv ZSGSRD 35318
17-03-17 20:30:50.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35317
17-03-17 20:30:50.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.948 -07 000000433 INF: FPGA: Recv ZSGSRD 35309
17-03-17 20:30:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.958 -07 000000547 INF: FPGA: Recv ZSGSRD 35312
17-03-17 20:30:50.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35315
17-03-17 20:30:50.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35310
17-03-17 20:30:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35309
17-03-17 20:30:50.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:50.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:50.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35315
17-03-17 20:30:51.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:51.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:51.008 -07 000000012 INF: FPGA: Recv ZPIEZORD 31245
17-03-17 20:30:51.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:51.018 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.0 V.
17-03-17 20:30:51.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35314 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35309 (-166.3 uncal um), Max = 35319 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:30:51.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35314, posNoise = 5, negNoise = 5
17-03-17 20:30:51.018 -07 000000610 INF: Z Motor: After move to -0.167178, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:51.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:30:51.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:51.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:51.018 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:51.018 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:51.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:51.018 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:51.018 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:51.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:51.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:51.018 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:51.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:51.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:51.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:51.028 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:51.028 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:30:51.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:51.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:51.038 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:30:51.038 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:30:51.038 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:51.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36696 150\n [Camera]
17-03-17 20:30:51.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:51.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:51.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:51.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:51.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:51.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:30:51.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:51.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:51.658 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:51.658 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:51.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 20:30:51.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:51.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36696 800
17-03-17 20:30:51.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:52.048 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:30:52.048 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:30:52.048 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:52.048 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:52.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:30:52.048 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:30:52.048 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:52.058 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:30:52.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:30:52.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:30:52.138 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.028963,
17-03-17 20:30:52.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:52.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:52.198 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:52.198 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:52.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:30:52.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:52.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:52.208 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:52.208 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:52.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:30:52.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:52.398 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:52.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36696 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:30:52.398 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167645
17-03-17 20:30:52.398 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16765 mm
17-03-17 20:30:52.398 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:52.398 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:30:52.398 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:30:52.398 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:52.398 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 36622, sync = True, waitForSettling = False)
17-03-17 20:30:52.398 -07 000000480 INF: Z Motor: Moving to -0.167645 mm, started at -0.167188 mm, distance = -0.46 um
17-03-17 20:30:52.398 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:30:52.408 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:52.408 -07 000000480 INF: FPGA: Xmit ZDACW 36622\n [Z Motor]
17-03-17 20:30:52.408 -07 000000541 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:52.408 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:52.408 -07 000000541 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:30:52.408 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:30:52.418 -07 000000480 INF: FPGA: 'ZDACW 36622' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:30:52.418 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:52.418 -07 000000012 INF: FPGA: Recv ZDACR 36622
17-03-17 20:30:52.428 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:52.428 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:52.428 -07 000000480 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 20:30:52.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:30:52.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:30:52.588 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:52.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:52.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:30:52.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:30:52.598 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:30:52.598 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:52.598 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:52.608 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:30:52.798 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:30:52.798 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 233 ms to get response, and 397 ms overall
17-03-17 20:30:52.838 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:52.838 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:30:52.848 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:30:52.848 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:52.848 -07 000000541 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:30:52.848 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 20:30:53.798 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:53.798 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:30:53.808 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.808 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:53.828 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:53.828 -07 000000541 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:30:53.828 -07 000000541 INF: Y Motor: Moved to 73.1763 after 1427 ms (table move)
17-03-17 20:30:53.828 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167645 mm (DAC = 36622)
17-03-17 20:30:53.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35380
17-03-17 20:30:53.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:30:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.838 -07 000000547 INF: FPGA: Recv ZSGSRD 35385
17-03-17 20:30:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:30:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35383
17-03-17 20:30:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.858 -07 000000576 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:30:53.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.868 -07 000000424 INF: FPGA: Recv ZSGSRD 35388
17-03-17 20:30:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:30:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.888 -07 000000482 INF: FPGA: Recv ZSGSRD 35391
17-03-17 20:30:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35375
17-03-17 20:30:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35381
17-03-17 20:30:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:53.918 -07 000000547 INF: FPGA: Recv ZSGSRD 35386
17-03-17 20:30:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:53.928 -07 000000512 INF: FPGA: Recv ZPIEZORD 31366
17-03-17 20:30:53.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35386 (-166.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35375 (-166.7 uncal um), Max = 35391 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 6, negNoise = 10
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: After move to -0.167645, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:30:53.938 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:53.988 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 20:30:53.988 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:53.988 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167644098647346. ----------
17-03-17 20:30:53.988 -07 000000610 INF: Cycle	39	Tile	17	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:53.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36445, sync = True, waitForSettling = True)
17-03-17 20:30:53.988 -07 000000610 INF: Z Motor: Moving to -0.166835 mm, started at -0.167644 mm, distance = 0.81 um
17-03-17 20:30:53.988 -07 000000610 INF: FPGA: Xmit ZDACW 36445\n [Z Motor]
17-03-17 20:30:53.988 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:30:53.998 -07 000000610 INF: FPGA: 'ZDACW 36445' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:30:53.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:53.998 -07 000000424 INF: FPGA: Recv ZDACR 36445
17-03-17 20:30:54.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35264
17-03-17 20:30:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35266
17-03-17 20:30:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35261
17-03-17 20:30:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.188 -07 000000547 INF: FPGA: Recv ZSGSRD 35263
17-03-17 20:30:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35264
17-03-17 20:30:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35265
17-03-17 20:30:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35254
17-03-17 20:30:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35259
17-03-17 20:30:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.238 -07 000000012 INF: FPGA: Recv ZSGSRD 35259
17-03-17 20:30:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:54.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35262
17-03-17 20:30:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:54.258 -07 000000482 INF: FPGA: Recv ZPIEZORD 31161
17-03-17 20:30:54.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:54.268 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.0 V.
17-03-17 20:30:54.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35262 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35254 (-165.9 uncal um), Max = 35266 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:30:54.268 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35262, posNoise = 4, negNoise = 8
17-03-17 20:30:54.268 -07 000000610 INF: Z Motor: After move to -0.166835, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:54.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:30:54.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:54.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:54.268 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:54.268 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:54.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:54.268 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:54.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:54.268 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:54.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:54.268 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:54.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:54.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:54.278 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:54.278 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:54.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:30:54.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:54.288 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:30:54.288 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:30:54.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:30:54.288 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:30:54.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36622 150\n [Camera]
17-03-17 20:30:54.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:54.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:54.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:54.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:54.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:54.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:30:54.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:54.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:54.918 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:54.918 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:54.918 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1073581672, 0x0, 418435064) start.
17-03-17 20:30:55.098 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 800
17-03-17 20:30:55.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:55.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1073581672, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:30:55.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:30:55.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:55.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:30:55.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:30:55.298 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:55.298 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:30:55.308 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:55.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:30:55.308 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:30:55.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:55.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:55.448 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:55.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:55.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:55.458 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:55.458 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:55.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1109003936, 0x0, 391868352) start.
17-03-17 20:30:55.458 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:55.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:30:55.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:30:55.648 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:55.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36622 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:30:55.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:30:55.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.16685392055391. ------
17-03-17 20:30:55.648 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:55.648 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17322 mm
17-03-17 20:30:55.648 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:55.658 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37841, sync = True, waitForSettling = False)
17-03-17 20:30:55.658 -07 000000459 INF: Z Motor: Moving to -0.173225 mm, started at -0.166854 mm, distance = -6.37 um
17-03-17 20:30:55.658 -07 000000459 INF: FPGA: Xmit ZDACW 37841\n [Z Motor]
17-03-17 20:30:55.658 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:30:55.658 -07 000000512 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:30:55.668 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:55.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:30:55.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:30:55.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:55.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1109003936, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:30:55.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:30:55.828 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:55.838 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:55.838 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:55.838 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:30:55.838 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:30:55.848 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:55.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:30:55.848 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:30:55.848 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 174 ms to get response, and 192 ms overall
17-03-17 20:30:55.848 -07 000000512 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:55.848 -07 000000512 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:55.848 -07 000000512 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:30:55.848 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:55.848 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 194 ms to get response, and 197 ms overall
17-03-17 20:30:55.848 -07 000000459 INF: FPGA: 'ZDACW 37841' command took 0 ms to send, 184 ms to get response, and 193 ms overall
17-03-17 20:30:55.858 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:30:55.868 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:55.868 -07 000000424 INF: FPGA: Recv ZDACR 37841
17-03-17 20:30:55.878 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:30:55.878 -07 000000459 INF: Z Motor: MoveAbsStepped took 219 ms (did NOT wait for settling yet))
17-03-17 20:30:56.058 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:30:56.058 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-17 20:30:56.228 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:30:56.228 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 373 ms to get response, and 378 ms overall
17-03-17 20:30:56.258 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:56.258 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:30:56.268 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:56.268 -07 000000512 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:56.268 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:30:56.268 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-17 20:30:56.788 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:30:56.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:30:57.218 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:57.218 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:30:57.228 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:57.228 -07 000000512 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:57.238 -07 000000512 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:30:57.238 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:30:57.238 -07 000000512 INF: Y Motor: Moved to 74.0083 after 1586 ms (table move)
17-03-17 20:30:57.248 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173225 mm (DAC = 37841)
17-03-17 20:30:57.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36256
17-03-17 20:30:57.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:30:57.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.258 -07 000000512 INF: FPGA: Recv ZSGSRD 36252
17-03-17 20:30:57.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.268 -07 000000424 INF: FPGA: Recv ZSGSRD 36260
17-03-17 20:30:57.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36260
17-03-17 20:30:57.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.288 -07 000000424 INF: FPGA: Recv ZSGSRD 36256
17-03-17 20:30:57.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.298 -07 000000424 INF: FPGA: Recv ZSGSRD 36261
17-03-17 20:30:57.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36259
17-03-17 20:30:57.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.318 -07 000000576 INF: FPGA: Recv ZSGSRD 36253
17-03-17 20:30:57.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36252
17-03-17 20:30:57.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.338 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:57.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36256
17-03-17 20:30:57.348 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.348 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:57.348 -07 000000626 INF: FPGA: Recv ZPIEZORD 32506
17-03-17 20:30:57.358 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.3 V.
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36256 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36256 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36252 (-172.3 uncal um), Max = 36261 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36256, posNoise = 5, negNoise = 4
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: After move to -0.173225, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: Settle wait time = 1591 ms, measure time = 108 ms (allowed 150 ms), total time = 1699 ms
17-03-17 20:30:57.358 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:30:57.408 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1752 ms
17-03-17 20:30:57.408 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:30:57.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:57.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:57.408 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:57.408 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:57.408 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:30:57.408 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:57.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:57.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:30:57.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:57.418 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:30:57.428 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:30:57.428 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:30:57.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:30:57.478 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:30:57.498 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.015368,
17-03-17 20:30:57.678 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:30:57.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:30:57.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:30:57.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) start.
17-03-17 20:30:57.718 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:30:57.718 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:30:57.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:30:57.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:30:57.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:57.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:30:57.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 20:30:57.918 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:30:57.918 -07 000000576 INF: Autofocus start
17-03-17 20:30:57.918 -07 000000576 INF: MeasureProfile start
17-03-17 20:30:57.918 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:30:57.928 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:30:57.928 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:30:57.928 -07 000000576 INF: MeasureProfile done
17-03-17 20:30:57.928 -07 000000576 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:30:57.928 -07 000000576 INF: Autofocus finished
17-03-17 20:30:58.128 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:30:58.128 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:30:58.128 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.17323958742282. ----------
17-03-17 20:30:58.138 -07 000000610 INF: Cycle	39	Tile	18	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:30:58.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36302, sync = True, waitForSettling = True)
17-03-17 20:30:58.138 -07 000000610 INF: Z Motor: Moving to -0.166180 mm, started at -0.173240 mm, distance = 7.06 um
17-03-17 20:30:58.138 -07 000000610 INF: FPGA: Xmit ZDACW 36302\n [Z Motor]
17-03-17 20:30:58.138 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:30:58.148 -07 000000610 INF: FPGA: 'ZDACW 36302' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:30:58.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:58.148 -07 000000626 INF: FPGA: Recv ZDACR 36302
17-03-17 20:30:58.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:30:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.308 -07 000000512 INF: FPGA: Recv ZSGSRD 35164
17-03-17 20:30:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:30:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.318 -07 000000626 INF: FPGA: Recv ZSGSRD 35159
17-03-17 20:30:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35160
17-03-17 20:30:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.338 -07 000000512 INF: FPGA: Recv ZSGSRD 35156
17-03-17 20:30:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35158
17-03-17 20:30:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.358 -07 000000482 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:30:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.368 -07 000000512 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:30:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35158
17-03-17 20:30:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35158
17-03-17 20:30:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:30:58.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35163
17-03-17 20:30:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:30:58.408 -07 000000626 INF: FPGA: Recv ZPIEZORD 31043
17-03-17 20:30:58.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:30:58.418 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.1 V.
17-03-17 20:30:58.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35159 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35158 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35155 (-165.3 uncal um), Max = 35164 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:30:58.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35159, posNoise = 5, negNoise = 4
17-03-17 20:30:58.418 -07 000000610 INF: Z Motor: After move to -0.166180, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:30:58.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:30:58.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:30:58.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:30:58.418 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:30:58.418 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:30:58.418 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:30:58.418 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:30:58.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:30:58.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:30:58.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:30:58.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:30:58.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:30:58.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:30:58.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:30:58.428 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:30:58.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:30:58.428 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:30:58.428 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:30:58.428 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:30:58.438 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:30:58.438 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:30:58.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36479 150\n [Camera]
17-03-17 20:30:58.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:30:59.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:30:59.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:30:59.048 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:59.058 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:30:59.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:30:59.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:59.058 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:59.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) start.
17-03-17 20:30:59.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:59.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:30:59.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36479 800
17-03-17 20:30:59.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:30:59.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:30:59.438 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:30:59.438 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:59.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:30:59.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:30:59.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:30:59.448 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:59.448 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:30:59.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:30:59.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:30:59.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:30:59.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:30:59.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:30:59.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:30:59.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:30:59.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:30:59.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:30:59.718 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:30:59.718 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:30:59.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:30:59.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:30:59.788 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:30:59.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36479 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-17 20:30:59.788 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166577
17-03-17 20:30:59.788 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16658 mm
17-03-17 20:30:59.788 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:30:59.788 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:30:59.788 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:30:59.788 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:30:59.788 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 36389, sync = True, waitForSettling = False)
17-03-17 20:30:59.788 -07 000000576 INF: Z Motor: Moving to -0.166578 mm, started at -0.166192 mm, distance = -0.39 um
17-03-17 20:30:59.798 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:30:59.798 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:30:59.798 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:30:59.798 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:30:59.798 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:30:59.798 -07 000000576 INF: FPGA: Xmit ZDACW 36389\n [Z Motor]
17-03-17 20:30:59.798 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:30:59.808 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:30:59.808 -07 000000576 INF: FPGA: 'ZDACW 36389' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:30:59.818 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:30:59.818 -07 000000512 INF: FPGA: Recv ZDACR 36389
17-03-17 20:30:59.828 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:30:59.828 -07 000000576 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 20:31:00.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:31:00.088 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:31:00.088 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:00.098 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:31:00.098 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:31:00.098 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:00.098 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:00.098 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:00.098 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 20:31:00.108 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:31:00.178 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:31:00.178 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:31:00.208 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:00.208 -07 000000482 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:31:00.218 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:00.218 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:00.218 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:31:00.218 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-17 20:31:01.168 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:01.168 -07 000000512 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:31:01.178 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:01.178 -07 000000541 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:01.188 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:01.188 -07 000000541 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:31:01.188 -07 000000541 INF: Y Motor: Moved to 74.8325 after 1399 ms (table move)
17-03-17 20:31:01.188 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166578 mm (DAC = 36389)
17-03-17 20:31:01.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35215
17-03-17 20:31:01.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:31:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:31:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:31:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35218
17-03-17 20:31:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35209
17-03-17 20:31:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35221
17-03-17 20:31:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.238 -07 000000569 INF: FPGA: Recv ZSGSRD 35232
17-03-17 20:31:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.248 -07 000000569 INF: FPGA: Recv ZSGSRD 35227
17-03-17 20:31:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.258 -07 000000569 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:31:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35223
17-03-17 20:31:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.278 -07 000000459 INF: FPGA: Recv ZSGSRD 35224
17-03-17 20:31:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:01.288 -07 000000576 INF: FPGA: Recv ZPIEZORD 31141
17-03-17 20:31:01.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.0 V.
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35223 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35224 (-165.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 35209 (-165.6 uncal um), Max = 35232 (-165.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35223, posNoise = 9, negNoise = 14
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: After move to -0.166578, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: Settle wait time = 1400 ms, measure time = 102 ms (allowed 150 ms), total time = 1502 ms
17-03-17 20:31:01.298 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:01.348 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1555 ms
17-03-17 20:31:01.348 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:01.348 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.166603376280381. ----------
17-03-17 20:31:01.348 -07 000000610 INF: Cycle	39	Tile	19	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:01.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36212, sync = True, waitForSettling = True)
17-03-17 20:31:01.348 -07 000000610 INF: Z Motor: Moving to -0.165768 mm, started at -0.166603 mm, distance = 0.84 um
17-03-17 20:31:01.348 -07 000000610 INF: FPGA: Xmit ZDACW 36212\n [Z Motor]
17-03-17 20:31:01.348 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:31:01.358 -07 000000610 INF: FPGA: 'ZDACW 36212' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:01.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:01.358 -07 000000459 INF: FPGA: Recv ZDACR 36212
17-03-17 20:31:01.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:01.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.518 -07 000000623 INF: FPGA: Recv ZSGSRD 35091
17-03-17 20:31:01.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35098
17-03-17 20:31:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35095
17-03-17 20:31:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.548 -07 000000459 INF: FPGA: Recv ZSGSRD 35093
17-03-17 20:31:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35097
17-03-17 20:31:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35096
17-03-17 20:31:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.578 -07 000000576 INF: FPGA: Recv ZSGSRD 35095
17-03-17 20:31:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35097
17-03-17 20:31:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35088
17-03-17 20:31:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:01.608 -07 000000541 INF: FPGA: Recv ZSGSRD 35095
17-03-17 20:31:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:01.618 -07 000000459 INF: FPGA: Recv ZPIEZORD 31025
17-03-17 20:31:01.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:01.628 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.526 V. Piezo Error = -9.0 V.
17-03-17 20:31:01.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35094 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35095 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35088 (-164.9 uncal um), Max = 35098 (-164.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:01.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35094, posNoise = 4, negNoise = 6
17-03-17 20:31:01.628 -07 000000610 INF: Z Motor: After move to -0.165768, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:01.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:31:01.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:01.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:01.628 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:01.628 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:01.628 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:01.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:01.628 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:01.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:01.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:01.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:01.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:31:01.628 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:01.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:31:01.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:01.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:31:01.638 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:01.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:31:01.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:01.648 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:31:01.648 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:31:01.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36389 150\n [Camera]
17-03-17 20:31:01.788 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:01.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:01.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:02.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:02.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:02.258 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:02.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:02.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:02.268 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:02.378 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:02.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1109135064, 0x0, 391868352) start.
17-03-17 20:31:02.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:02.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:31:02.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36389 800
17-03-17 20:31:02.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:02.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1109135064, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:31:02.758 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:31:02.758 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:02.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:31:02.758 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:31:02.758 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:02.758 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:02.758 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 20:31:02.758 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:02.768 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 20:31:02.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:02.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:02.808 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:02.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:02.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:02.808 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:02.808 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:02.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:31:02.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:02.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:31:02.858 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.011254,
17-03-17 20:31:02.998 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:02.998 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:02.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36389 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-17 20:31:03.188 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:31:03.188 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:31:03.188 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:03.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:31:03.188 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:31:03.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:03.188 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:03.198 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:03.198 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:31:03.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:31:03.198 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:31:03.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:31:03.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:31:03.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:31:03.278 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:31:03.278 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:31:03.288 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 20:31:03.298 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:03.298 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:31:03.798 -07 000000576 INF: FPGA: Recv EMIN
17-03-17 20:31:03.798 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:31:03.798 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:31:03.798 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 20:31:03.808 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:03.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:31:03.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165774652914094. ------
17-03-17 20:31:03.808 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:03.808 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14031 mm
17-03-17 20:31:03.808 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:03.808 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30651, sync = True, waitForSettling = False)
17-03-17 20:31:03.808 -07 000000623 INF: Z Motor: Moving to -0.140311 mm, started at -0.165775 mm, distance = 25.46 um
17-03-17 20:31:03.808 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:31:03.808 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:31:03.818 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:03.818 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:03.818 -07 000000623 INF: FPGA: Xmit ZDACW 30651\n [Z Motor]
17-03-17 20:31:03.818 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:31:03.828 -07 000000623 INF: FPGA: 'ZDACW 30651' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:31:03.828 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:03.828 -07 000000576 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:31:03.838 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:31:03.838 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:31:03.838 -07 000000459 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:03.838 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:31:03.838 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:31:03.848 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:03.848 -07 000000512 INF: FPGA: Recv ZDACR 30651
17-03-17 20:31:03.858 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:31:03.858 -07 000000623 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:31:03.858 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:31:04.038 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:31:04.038 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 20:31:05.478 -07 000000512 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:31:05.478 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 20:31:05.478 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:31:05.478 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:31:05.478 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 20:31:06.788 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:08.218 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.016692,
17-03-17 20:31:08.328 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:08.328 -07 000000569 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:31:08.338 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:08.338 -07 000000459 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:08.358 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:08.358 -07 000000459 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:31:08.358 -07 000000459 INF: Y Motor: Moved to 59.9106 after 4550 ms
17-03-17 20:31:08.368 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140311 mm (DAC = 30651)
17-03-17 20:31:08.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:08.368 -07 000000576 INF: FPGA: Recv ZSGSRD 31133
17-03-17 20:31:08.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:08.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:08.378 -07 000000576 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:31:08.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:08.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:08.388 -07 000000576 INF: FPGA: Recv ZSGSRD 31133
17-03-17 20:31:08.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:08.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:08.398 -07 000000576 INF: FPGA: Recv ZSGSRD 31131
17-03-17 20:31:08.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:08.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:08.408 -07 000000576 INF: FPGA: Recv ZSGSRD 31126
17-03-17 20:31:08.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:08.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:09.418 -07 000000512 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:31:09.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 990 ms to get response, and 1000 ms overall
17-03-17 20:31:09.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:09.418 -07 000000569 INF: FPGA: Recv ZSGSRD 31132
17-03-17 20:31:09.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:09.428 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:09.428 -07 000000012 INF: FPGA: Recv ZSGSRD 31135
17-03-17 20:31:09.438 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:09.438 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:09.438 -07 000000433 INF: FPGA: Recv ZSGSRD 31131
17-03-17 20:31:09.448 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:09.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:09.448 -07 000000623 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:31:09.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:09.458 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:09.458 -07 000000626 INF: FPGA: Recv ZPIEZORD 26833
17-03-17 20:31:09.468 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.4 V.
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31133 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31133 (-139.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31126 (-139.5 uncal um), Max = 31137 (-139.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31133, posNoise = 4, negNoise = 7
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: After move to -0.140311, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: Settle wait time = 4555 ms, measure time = 1097 ms (allowed 150 ms), total time = 5652 ms
17-03-17 20:31:09.468 -07 000000547 INF: Z Motor: Warning: Actual position measuring time = 1097 ms, longer than max expected time of 150 ms
17-03-17 20:31:09.468 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5655 ms
17-03-17 20:31:09.468 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:09.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:09.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:09.468 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:09.468 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:09.468 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:31:09.468 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:09.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:09.478 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:31:09.498 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:31:09.498 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:31:09.498 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:31:09.498 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:31:09.508 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:31:09.508 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 36 ms.
17-03-17 20:31:09.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:31:09.558 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:31:09.758 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:31:09.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:31:09.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:31:09.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) start.
17-03-17 20:31:09.798 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:31:09.798 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:31:09.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:31:09.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:31:09.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:09.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:31:09.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:31:09.898 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:09.898 -07 000000462 INF: Image SNR check: start
17-03-17 20:31:09.898 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:09.908 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:09.908 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:31:09.908 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=59.01]
17-03-17 20:31:09.908 -07 000000462 INF: Autofocus start
17-03-17 20:31:09.908 -07 000000462 INF: MeasureProfile start
17-03-17 20:31:09.928 -07 000000462 INF: MeasureProfile done
17-03-17 20:31:09.928 -07 000000462 INF: X=30  Z correction [um]=0.1203633
17-03-17 20:31:09.928 -07 000000462 INF: Autofocus finished
17-03-17 20:31:10.108 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:31:10.108 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:31:10.108 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140328348620579. ----------
17-03-17 20:31:10.118 -07 000000610 INF: Cycle	39	Tile	1	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:10.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29189, sync = True, waitForSettling = True)
17-03-17 20:31:10.118 -07 000000610 INF: Z Motor: Moving to -0.133619 mm, started at -0.140328 mm, distance = 6.71 um
17-03-17 20:31:10.118 -07 000000610 INF: FPGA: Xmit ZDACW 29189\n [Z Motor]
17-03-17 20:31:10.118 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:31:10.128 -07 000000610 INF: FPGA: 'ZDACW 29189' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:10.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:10.128 -07 000000547 INF: FPGA: Recv ZDACR 29189
17-03-17 20:31:10.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:10.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.288 -07 000000547 INF: FPGA: Recv ZSGSRD 30083
17-03-17 20:31:10.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.298 -07 000000433 INF: FPGA: Recv ZSGSRD 30089
17-03-17 20:31:10.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:10.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.308 -07 000000433 INF: FPGA: Recv ZSGSRD 30086
17-03-17 20:31:10.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.318 -07 000000433 INF: FPGA: Recv ZSGSRD 30094
17-03-17 20:31:10.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30093
17-03-17 20:31:10.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30088
17-03-17 20:31:10.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.348 -07 000000623 INF: FPGA: Recv ZSGSRD 30088
17-03-17 20:31:10.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.358 -07 000000433 INF: FPGA: Recv ZSGSRD 30085
17-03-17 20:31:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.368 -07 000000433 INF: FPGA: Recv ZSGSRD 30092
17-03-17 20:31:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:10.378 -07 000000433 INF: FPGA: Recv ZSGSRD 30093
17-03-17 20:31:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:10.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 25686
17-03-17 20:31:10.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:10.398 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.7 V.
17-03-17 20:31:10.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30089 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30088 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30083 (-132.8 uncal um), Max = 30094 (-132.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:10.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30089, posNoise = 5, negNoise = 6
17-03-17 20:31:10.398 -07 000000610 INF: Z Motor: After move to -0.133619, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:10.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:31:10.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:10.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:10.398 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:10.398 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:10.398 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:10.398 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:10.398 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:10.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:10.398 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:10.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:10.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:10.398 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:31:10.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:31:10.398 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:10.418 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:31:10.418 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:31:10.418 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:31:10.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:10.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:10.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:10.438 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:31:10.438 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 20:31:10.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29366 150\n [Camera]
17-03-17 20:31:10.638 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:11.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:11.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:11.058 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:11.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:11.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:11.058 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:11.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:11.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) start.
17-03-17 20:31:11.068 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:11.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:31:11.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29366 800
17-03-17 20:31:11.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:11.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:31:11.448 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:31:11.448 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:11.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:31:11.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:31:11.448 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:11.448 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:11.458 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:11.458 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:31:11.458 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:31:11.598 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:11.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:11.598 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:11.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:11.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:11.608 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:11.608 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:11.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:31:11.608 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:11.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:31:11.788 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:11.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:11.788 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:11.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29366 150' command took 2 ms to send, 1348 ms to get response, and 1352 ms overall
17-03-17 20:31:11.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:31:11.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.13362147114458. ------
17-03-17 20:31:11.798 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:11.798 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14016 mm
17-03-17 20:31:11.798 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:11.798 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:31:11.798 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:31:11.798 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:11.798 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30617, sync = True, waitForSettling = False)
17-03-17 20:31:11.798 -07 000000569 INF: Z Motor: Moving to -0.140156 mm, started at -0.133621 mm, distance = -6.53 um
17-03-17 20:31:11.808 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:11.808 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:11.808 -07 000000547 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:31:11.818 -07 000000569 INF: FPGA: Xmit ZDACW 30617\n [Z Motor]
17-03-17 20:31:11.818 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:31:11.818 -07 000000626 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:11.818 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:11.818 -07 000000626 INF: Y Motor: Moving 1331 steps2
17-03-17 20:31:11.818 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:31:11.828 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:31:11.828 -07 000000569 INF: FPGA: 'ZDACW 30617' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:31:11.838 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:11.848 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:11.848 -07 000000012 INF: FPGA: Recv ZDACR 30617
17-03-17 20:31:11.858 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:31:11.858 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:31:12.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:31:12.008 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:31:12.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:12.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:31:12.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:31:12.008 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:12.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:12.008 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:31:12.008 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:12.018 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:31:12.028 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:31:12.028 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:31:12.208 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:31:12.208 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:31:12.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:12.248 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:31:12.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:12.248 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:12.248 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:31:12.248 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 20:31:13.198 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:13.198 -07 000000012 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:31:13.208 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.208 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:13.228 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:13.228 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:13.228 -07 000000626 INF: Y Motor: Moved to 60.7329 after 1426 ms (table move)
17-03-17 20:31:13.228 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140156 mm (DAC = 30617)
17-03-17 20:31:13.228 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.238 -07 000000623 INF: FPGA: Recv ZSGSRD 31114
17-03-17 20:31:13.238 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:31:13.238 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.238 -07 000000482 INF: FPGA: Recv ZSGSRD 31109
17-03-17 20:31:13.248 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.248 -07 000000569 INF: FPGA: Recv ZSGSRD 31111
17-03-17 20:31:13.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.268 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.268 -07 000000462 INF: FPGA: Recv ZSGSRD 31113
17-03-17 20:31:13.278 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:13.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.278 -07 000000623 INF: FPGA: Recv ZSGSRD 31118
17-03-17 20:31:13.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.288 -07 000000576 INF: FPGA: Recv ZSGSRD 31104
17-03-17 20:31:13.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.298 -07 000000424 INF: FPGA: Recv ZSGSRD 31100
17-03-17 20:31:13.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.308 -07 000000623 INF: FPGA: Recv ZSGSRD 31100
17-03-17 20:31:13.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.318 -07 000000459 INF: FPGA: Recv ZSGSRD 31109
17-03-17 20:31:13.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:13.328 -07 000000424 INF: FPGA: Recv ZSGSRD 31111
17-03-17 20:31:13.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.338 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:13.338 -07 000000012 INF: FPGA: Recv ZPIEZORD 27100
17-03-17 20:31:13.348 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -8.8 V.
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31109 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31110 (-139.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31100 (-139.3 uncal um), Max = 31118 (-139.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31109, posNoise = 9, negNoise = 9
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: After move to -0.140156, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: Settle wait time = 1428 ms, measure time = 114 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:31:13.348 -07 000000512 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:13.388 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 20:31:13.388 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:13.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:13.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:13.388 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:31:13.388 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:13.388 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:13.388 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:13.388 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:31:13.388 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:31:13.388 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:31:13.388 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:31:13.398 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:31:13.398 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:31:13.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:31:13.448 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:31:13.578 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.003063,
17-03-17 20:31:13.648 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:31:13.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:31:13.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:31:13.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2237544832, 0x0, 559484976) start.
17-03-17 20:31:13.688 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:31:13.688 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:31:13.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:31:13.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2237544832, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:31:13.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:13.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:31:13.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:31:13.888 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:13.888 -07 000000480 INF: Autofocus start
17-03-17 20:31:13.888 -07 000000480 INF: MeasureProfile start
17-03-17 20:31:13.888 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:13.898 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:13.898 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:31:13.898 -07 000000480 INF: MeasureProfile done
17-03-17 20:31:13.898 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:31:13.898 -07 000000480 INF: Autofocus finished
17-03-17 20:31:14.098 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:31:14.098 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:31:14.098 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140174167529177. ----------
17-03-17 20:31:14.098 -07 000000610 INF: Cycle	39	Tile	2	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:14.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29112, sync = True, waitForSettling = True)
17-03-17 20:31:14.108 -07 000000610 INF: Z Motor: Moving to -0.133266 mm, started at -0.140174 mm, distance = 6.91 um
17-03-17 20:31:14.108 -07 000000610 INF: FPGA: Xmit ZDACW 29112\n [Z Motor]
17-03-17 20:31:14.108 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:31:14.118 -07 000000610 INF: FPGA: 'ZDACW 29112' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:14.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:14.118 -07 000000424 INF: FPGA: Recv ZDACR 29112
17-03-17 20:31:14.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.278 -07 000000512 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:31:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.288 -07 000000623 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:31:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:31:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:31:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:31:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:31:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.338 -07 000000547 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:31:14.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.348 -07 000000569 INF: FPGA: Recv ZSGSRD 30037
17-03-17 20:31:14.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:31:14.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:14.368 -07 000000433 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:31:14.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:14.378 -07 000000547 INF: FPGA: Recv ZPIEZORD 25689
17-03-17 20:31:14.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:14.388 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.5 V.
17-03-17 20:31:14.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30035 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30034 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30032 (-132.5 uncal um), Max = 30040 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:31:14.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30035, posNoise = 5, negNoise = 3
17-03-17 20:31:14.388 -07 000000610 INF: Z Motor: After move to -0.133266, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:14.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:31:14.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:14.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:14.388 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:14.388 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:14.388 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:14.388 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:14.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:14.388 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:14.388 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:14.388 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:14.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:14.388 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:14.398 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:14.398 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:14.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:14.398 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:14.408 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:31:14.408 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:31:14.408 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:31:14.408 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:31:14.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29289 150\n [Camera]
17-03-17 20:31:14.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:15.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:15.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:15.028 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:15.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:15.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 20:31:15.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:15.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:15.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:15.028 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:15.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:31:15.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29289 800
17-03-17 20:31:15.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:15.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:31:15.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:31:15.428 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:15.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:31:15.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:31:15.428 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:15.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:15.438 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:31:15.438 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:15.448 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:31:15.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:15.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:15.568 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:15.568 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:15.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:31:15.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:15.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:15.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:15.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:15.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:31:15.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:15.758 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:15.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29289 150' command took 2 ms to send, 1346 ms to get response, and 1350 ms overall
17-03-17 20:31:15.758 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133987
17-03-17 20:31:15.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13399 mm
17-03-17 20:31:15.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:15.768 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:31:15.768 -07 000000459 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:31:15.768 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:15.768 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29269, sync = True, waitForSettling = False)
17-03-17 20:31:15.768 -07 000000541 INF: Z Motor: Moving to -0.133985 mm, started at -0.133275 mm, distance = -0.71 um
17-03-17 20:31:15.768 -07 000000626 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:31:15.778 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:15.778 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:15.778 -07 000000541 INF: FPGA: Xmit ZDACW 29269\n [Z Motor]
17-03-17 20:31:15.778 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:31:15.778 -07 000000459 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:15.778 -07 000000459 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:31:15.788 -07 000000541 INF: FPGA: 'ZDACW 29269' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:31:15.788 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:15.788 -07 000000480 INF: FPGA: Recv ZDACR 29269
17-03-17 20:31:15.798 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:15.798 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:15.798 -07 000000541 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 20:31:15.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:31:15.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:31:15.968 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:15.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:31:15.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:31:15.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:15.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:15.978 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:31:15.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:31:15.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:31:16.178 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:31:16.178 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-17 20:31:16.208 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:16.218 -07 000000626 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:31:16.218 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:31:16.218 -07 000000459 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:16.218 -07 000000459 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:31:16.218 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 20:31:16.788 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:17.168 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:17.168 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:31:17.178 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:17.178 -07 000000459 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:17.198 -07 000000459 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:17.198 -07 000000459 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:17.198 -07 000000459 INF: Y Motor: Moved to 61.5640 after 1432 ms (table move)
17-03-17 20:31:17.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133985 mm (DAC = 29269)
17-03-17 20:31:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.198 -07 000000480 INF: FPGA: Recv ZSGSRD 30142
17-03-17 20:31:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.208 -07 000000569 INF: FPGA: Recv ZSGSRD 30140
17-03-17 20:31:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30148
17-03-17 20:31:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30153
17-03-17 20:31:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.248 -07 000000626 INF: FPGA: Recv ZSGSRD 30151
17-03-17 20:31:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 10 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30145
17-03-17 20:31:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30142
17-03-17 20:31:17.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30142
17-03-17 20:31:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30141
17-03-17 20:31:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.298 -07 000000459 INF: FPGA: Recv ZSGSRD 30145
17-03-17 20:31:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:17.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 25881
17-03-17 20:31:17.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.4 V.
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30145 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30144 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30140 (-133.2 uncal um), Max = 30153 (-133.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30145, posNoise = 8, negNoise = 5
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: After move to -0.133985, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 115 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:31:17.318 -07 000000610 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:17.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:31:17.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:17.358 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.133981227024519. ----------
17-03-17 20:31:17.358 -07 000000610 INF: Cycle	39	Tile	3	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:17.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29093, sync = True, waitForSettling = True)
17-03-17 20:31:17.358 -07 000000610 INF: Z Motor: Moving to -0.133179 mm, started at -0.133981 mm, distance = 0.80 um
17-03-17 20:31:17.358 -07 000000610 INF: FPGA: Xmit ZDACW 29093\n [Z Motor]
17-03-17 20:31:17.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:31:17.368 -07 000000610 INF: FPGA: 'ZDACW 29093' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:17.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:17.368 -07 000000482 INF: FPGA: Recv ZDACR 29093
17-03-17 20:31:17.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30022
17-03-17 20:31:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.538 -07 000000512 INF: FPGA: Recv ZSGSRD 30024
17-03-17 20:31:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:31:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.558 -07 000000626 INF: FPGA: Recv ZSGSRD 30019
17-03-17 20:31:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30021
17-03-17 20:31:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.578 -07 000000576 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:31:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.588 -07 000000482 INF: FPGA: Recv ZSGSRD 30023
17-03-17 20:31:17.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.598 -07 000000576 INF: FPGA: Recv ZSGSRD 30016
17-03-17 20:31:17.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.608 -07 000000569 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:31:17.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:17.618 -07 000000482 INF: FPGA: Recv ZSGSRD 30020
17-03-17 20:31:17.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:17.628 -07 000000569 INF: FPGA: Recv ZPIEZORD 25712
17-03-17 20:31:17.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:17.638 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.5 V.
17-03-17 20:31:17.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30021 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30021 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30015 (-132.4 uncal um), Max = 30025 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:17.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30021, posNoise = 4, negNoise = 6
17-03-17 20:31:17.638 -07 000000610 INF: Z Motor: After move to -0.133179, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:17.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:31:17.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:17.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:17.638 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:17.638 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:17.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:17.638 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:17.638 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:17.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:17.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:17.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:17.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:17.638 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:17.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:31:17.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:17.648 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:31:17.648 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:17.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:31:17.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:31:17.658 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:31:17.658 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:17.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29269 150\n [Camera]
17-03-17 20:31:17.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:18.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:18.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:18.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:18.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:18.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:31:18.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:18.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:18.278 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:18.278 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:18.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:31:18.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29269 800
17-03-17 20:31:18.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:18.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:31:18.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:31:18.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:18.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:31:18.658 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:31:18.658 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:18.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:18.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:31:18.658 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:18.668 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:31:18.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:18.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:18.818 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:18.818 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:18.818 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:31:18.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:18.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:18.818 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:18.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:18.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:31:18.938 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.000345,
17-03-17 20:31:19.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:31:19.008 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:19.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29269 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-17 20:31:19.008 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133284
17-03-17 20:31:19.008 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13328 mm
17-03-17 20:31:19.008 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:19.008 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:31:19.008 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:31:19.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:19.008 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29116, sync = True, waitForSettling = False)
17-03-17 20:31:19.008 -07 000000623 INF: Z Motor: Moving to -0.133285 mm, started at -0.133185 mm, distance = -0.10 um
17-03-17 20:31:19.018 -07 000000623 INF: FPGA: Xmit ZDACW 29116\n [Z Motor]
17-03-17 20:31:19.018 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:31:19.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:31:19.018 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:19.018 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:19.018 -07 000000482 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:31:19.018 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:31:19.028 -07 000000623 INF: FPGA: 'ZDACW 29116' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:19.028 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:19.028 -07 000000576 INF: FPGA: Recv ZDACR 29116
17-03-17 20:31:19.038 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:19.038 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:19.038 -07 000000623 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:31:19.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:31:19.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:31:19.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:19.198 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:31:19.198 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:31:19.198 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:19.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:19.198 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:19.198 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:31:19.208 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:31:19.408 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:31:19.408 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:31:19.448 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:19.448 -07 000000541 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:31:19.458 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:19.458 -07 000000482 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:19.458 -07 000000482 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:31:19.458 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 20:31:20.408 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:20.408 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:31:20.418 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:20.418 -07 000000482 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:20.438 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:20.438 -07 000000482 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:20.438 -07 000000482 INF: Y Motor: Moved to 62.3955 after 1422 ms (table move)
17-03-17 20:31:20.438 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133285 mm (DAC = 29116)
17-03-17 20:31:20.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:31:20.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.448 -07 000000012 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:31:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.458 -07 000000459 INF: FPGA: Recv ZSGSRD 30043
17-03-17 20:31:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.468 -07 000000482 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:31:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.478 -07 000000433 INF: FPGA: Recv ZSGSRD 30043
17-03-17 20:31:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.488 -07 000000012 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:31:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.498 -07 000000433 INF: FPGA: Recv ZSGSRD 30043
17-03-17 20:31:20.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.508 -07 000000576 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:31:20.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:31:20.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.528 -07 000000482 INF: FPGA: Recv ZSGSRD 30042
17-03-17 20:31:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:20.538 -07 000000433 INF: FPGA: Recv ZPIEZORD 25767
17-03-17 20:31:20.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.4 V.
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30039 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30029 (-132.4 uncal um), Max = 30043 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30039, posNoise = 4, negNoise = 10
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: After move to -0.133285, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 106 ms (allowed 150 ms), total time = 1530 ms
17-03-17 20:31:20.548 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:20.598 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:31:20.598 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:20.598 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.133300260537492. ----------
17-03-17 20:31:20.598 -07 000000610 INF: Cycle	39	Tile	4	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:20.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28939, sync = True, waitForSettling = True)
17-03-17 20:31:20.598 -07 000000610 INF: Z Motor: Moving to -0.132474 mm, started at -0.133300 mm, distance = 0.83 um
17-03-17 20:31:20.598 -07 000000610 INF: FPGA: Xmit ZDACW 28939\n [Z Motor]
17-03-17 20:31:20.598 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:31:20.608 -07 000000610 INF: FPGA: 'ZDACW 28939' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:20.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:20.608 -07 000000569 INF: FPGA: Recv ZDACR 28939
17-03-17 20:31:20.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29906
17-03-17 20:31:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29920
17-03-17 20:31:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.788 -07 000000541 INF: FPGA: Recv ZSGSRD 29916
17-03-17 20:31:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.798 -07 000000012 INF: FPGA: Recv ZSGSRD 29908
17-03-17 20:31:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.808 -07 000000482 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:31:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.818 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-17 20:31:20.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.828 -07 000000541 INF: FPGA: Recv ZSGSRD 29920
17-03-17 20:31:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29913
17-03-17 20:31:20.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29907
17-03-17 20:31:20.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:20.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29915
17-03-17 20:31:20.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:20.868 -07 000000541 INF: FPGA: Recv ZPIEZORD 25594
17-03-17 20:31:20.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:20.878 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.5 V.
17-03-17 20:31:20.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29912 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29911 (-131.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29906 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:20.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29912, posNoise = 8, negNoise = 6
17-03-17 20:31:20.878 -07 000000610 INF: Z Motor: After move to -0.132474, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:20.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:31:20.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:20.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:20.878 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:20.878 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:20.878 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:20.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:20.878 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:20.878 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:20.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:20.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:20.878 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:20.878 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:20.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:20.888 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:20.888 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:20.888 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:20.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:31:20.898 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:31:20.898 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:31:20.898 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:31:20.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29116 150\n [Camera]
17-03-17 20:31:21.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:21.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:21.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:21.518 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:21.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:21.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:31:21.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:21.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:21.518 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:21.518 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:21.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:31:21.708 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 800
17-03-17 20:31:21.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:21.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:21.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:31:21.898 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:31:21.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:21.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:31:21.898 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:31:21.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:21.898 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:21.898 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:21.898 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:31:21.908 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:31:22.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:22.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:22.058 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:22.058 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:22.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:31:22.058 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:22.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:22.068 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:22.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:22.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:31:22.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:31:22.248 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:22.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29116 150' command took 4 ms to send, 1338 ms to get response, and 1349 ms overall
17-03-17 20:31:22.248 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133112
17-03-17 20:31:22.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13311 mm
17-03-17 20:31:22.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:22.258 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:31:22.258 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:31:22.258 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:22.258 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29078, sync = True, waitForSettling = False)
17-03-17 20:31:22.258 -07 000000547 INF: Z Motor: Moving to -0.133111 mm, started at -0.132484 mm, distance = -0.63 um
17-03-17 20:31:22.258 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:31:22.268 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:22.268 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:22.268 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:22.268 -07 000000512 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:31:22.268 -07 000000547 INF: FPGA: Xmit ZDACW 29078\n [Z Motor]
17-03-17 20:31:22.268 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:31:22.278 -07 000000547 INF: FPGA: 'ZDACW 29078' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:31:22.278 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:22.288 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:22.288 -07 000000480 INF: FPGA: Recv ZDACR 29078
17-03-17 20:31:22.298 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:22.298 -07 000000547 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 20:31:22.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:31:22.438 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:31:22.438 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:22.448 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:31:22.448 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:31:22.448 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:22.448 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:22.448 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:31:22.448 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:22.458 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:31:22.648 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:31:22.648 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 20:31:22.688 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:22.688 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:31:22.698 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:22.698 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:22.698 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:31:22.698 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 20:31:23.648 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:23.648 -07 000000012 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:31:23.658 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:23.658 -07 000000512 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:23.678 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:23.678 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:31:23.678 -07 000000512 INF: Y Motor: Moved to 63.2246 after 1418 ms (table move)
17-03-17 20:31:23.678 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133111 mm (DAC = 29078)
17-03-17 20:31:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.678 -07 000000012 INF: FPGA: Recv ZSGSRD 30003
17-03-17 20:31:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.688 -07 000000512 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:31:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.698 -07 000000012 INF: FPGA: Recv ZSGSRD 30010
17-03-17 20:31:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.708 -07 000000547 INF: FPGA: Recv ZSGSRD 30013
17-03-17 20:31:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.718 -07 000000012 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:31:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30015
17-03-17 20:31:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30009
17-03-17 20:31:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.748 -07 000000462 INF: FPGA: Recv ZSGSRD 30000
17-03-17 20:31:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.758 -07 000000012 INF: FPGA: Recv ZSGSRD 29998
17-03-17 20:31:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:23.768 -07 000000462 INF: FPGA: Recv ZSGSRD 30010
17-03-17 20:31:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:23.778 -07 000000424 INF: FPGA: Recv ZPIEZORD 25748
17-03-17 20:31:23.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.4 V.
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30008 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30010 (-132.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29998 (-132.3 uncal um), Max = 30015 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30008, posNoise = 7, negNoise = 10
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: After move to -0.133111, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 104 ms (allowed 150 ms), total time = 1524 ms
17-03-17 20:31:23.788 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:23.838 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 20:31:23.838 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:23.838 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.133101109961098. ----------
17-03-17 20:31:23.838 -07 000000610 INF: Cycle	39	Tile	5	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:23.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28902, sync = True, waitForSettling = True)
17-03-17 20:31:23.838 -07 000000610 INF: Z Motor: Moving to -0.132305 mm, started at -0.133101 mm, distance = 0.80 um
17-03-17 20:31:23.838 -07 000000610 INF: FPGA: Xmit ZDACW 28902\n [Z Motor]
17-03-17 20:31:23.838 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:31:23.848 -07 000000610 INF: FPGA: 'ZDACW 28902' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:23.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:23.848 -07 000000462 INF: FPGA: Recv ZDACR 28902
17-03-17 20:31:23.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:23.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:24.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.008 -07 000000480 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:31:24.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:24.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:31:24.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.028 -07 000000480 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:31:24.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:31:24.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29886
17-03-17 20:31:24.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29885
17-03-17 20:31:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:31:24.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:31:24.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:31:24.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:24.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:31:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:24.108 -07 000000480 INF: FPGA: Recv ZPIEZORD 25608
17-03-17 20:31:24.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:24.118 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.4 V.
17-03-17 20:31:24.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29886 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29893 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:31:24.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29886, posNoise = 7, negNoise = 7
17-03-17 20:31:24.118 -07 000000610 INF: Z Motor: After move to -0.132305, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:24.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:31:24.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:24.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:24.118 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:24.128 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:24.128 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:24.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:24.128 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:24.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:24.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:24.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:24.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:24.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:24.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:24.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:24.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:24.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:24.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:31:24.148 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:31:24.148 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:31:24.148 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:31:24.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29078 150\n [Camera]
17-03-17 20:31:24.298 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.001704,
17-03-17 20:31:24.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:24.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:24.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:24.758 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:24.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:24.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:31:24.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:24.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:24.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:24.768 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:24.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:31:24.958 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29078 800
17-03-17 20:31:25.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:25.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:31:25.138 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:31:25.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:25.148 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:25.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:31:25.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:31:25.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:25.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:25.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:31:25.158 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:31:25.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:25.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:25.308 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:25.308 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:25.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:31:25.308 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:25.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:25.308 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:25.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:25.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 20:31:25.498 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:31:25.498 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:25.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29078 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-17 20:31:25.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:31:25.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132317356079803. ------
17-03-17 20:31:25.498 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:25.498 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13879 mm
17-03-17 20:31:25.498 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:25.498 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:31:25.498 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 20:31:25.508 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:25.508 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:25.508 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:31:25.508 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30318, sync = True, waitForSettling = False)
17-03-17 20:31:25.508 -07 000000512 INF: Z Motor: Moving to -0.138787 mm, started at -0.132317 mm, distance = -6.47 um
17-03-17 20:31:25.508 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:31:25.518 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:31:25.518 -07 000000433 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:25.518 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:25.518 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:31:25.518 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:31:25.528 -07 000000512 INF: FPGA: Xmit ZDACW 30318\n [Z Motor]
17-03-17 20:31:25.528 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:31:25.538 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:25.538 -07 000000512 INF: FPGA: 'ZDACW 30318' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:31:25.548 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:25.548 -07 000000576 INF: FPGA: Recv ZDACR 30318
17-03-17 20:31:25.558 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:25.558 -07 000000512 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:31:25.688 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:31:25.688 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:31:25.688 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:25.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:31:25.688 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:31:25.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:25.698 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:25.698 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:31:25.698 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:25.698 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:31:25.718 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:31:25.718 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:31:25.908 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:31:25.908 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:31:25.948 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:25.948 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:31:25.958 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:25.958 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:25.958 -07 000000433 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:31:25.958 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 20:31:26.788 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:26.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:26.908 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:26.908 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:31:26.918 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:26.918 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:26.938 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:26.938 -07 000000433 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:26.938 -07 000000433 INF: Y Motor: Moved to 64.0571 after 1430 ms (table move)
17-03-17 20:31:26.938 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138787 mm (DAC = 30318)
17-03-17 20:31:26.938 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.938 -07 000000462 INF: FPGA: Recv ZSGSRD 30900
17-03-17 20:31:26.948 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:26.948 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.948 -07 000000482 INF: FPGA: Recv ZSGSRD 30891
17-03-17 20:31:26.958 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:26.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.958 -07 000000433 INF: FPGA: Recv ZSGSRD 30897
17-03-17 20:31:26.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:26.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.968 -07 000000433 INF: FPGA: Recv ZSGSRD 30902
17-03-17 20:31:26.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:26.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:31:26.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:26.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.988 -07 000000462 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:31:26.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:26.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:26.998 -07 000000433 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:31:27.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.008 -07 000000462 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:31:27.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.018 -07 000000462 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:31:27.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:31:27.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.038 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:27.038 -07 000000462 INF: FPGA: Recv ZPIEZORD 26908
17-03-17 20:31:27.048 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -8.8 V.
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30894 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30892 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30887 (-137.9 uncal um), Max = 30902 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30894, posNoise = 8, negNoise = 7
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: After move to -0.138787, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: Settle wait time = 1430 ms, measure time = 107 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:31:27.048 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:27.098 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:31:27.098 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:27.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:27.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:27.098 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:27.098 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:27.098 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:31:27.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:27.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:27.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:31:27.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:31:27.108 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:31:27.118 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:31:27.118 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:31:27.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:31:27.168 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:31:27.368 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:31:27.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:31:27.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:31:27.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1148962632, 0x0, 559484976) start.
17-03-17 20:31:27.408 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:31:27.408 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:31:27.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 20:31:27.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1148962632, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:31:27.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:27.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:31:27.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 20:31:27.508 -07 000000433 INF: Autofocus start
17-03-17 20:31:27.508 -07 000000433 INF: MeasureProfile start
17-03-17 20:31:27.508 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:27.508 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:27.518 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:27.518 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:31:27.518 -07 000000433 INF: MeasureProfile done
17-03-17 20:31:27.518 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:31:27.518 -07 000000433 INF: Autofocus finished
17-03-17 20:31:27.718 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:31:27.718 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:31:27.718 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138792961918698. ----------
17-03-17 20:31:27.718 -07 000000610 INF: Cycle	39	Tile	6	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:27.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28813, sync = True, waitForSettling = True)
17-03-17 20:31:27.728 -07 000000610 INF: Z Motor: Moving to -0.131897 mm, started at -0.138793 mm, distance = 6.90 um
17-03-17 20:31:27.728 -07 000000610 INF: FPGA: Xmit ZDACW 28813\n [Z Motor]
17-03-17 20:31:27.728 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:31:27.738 -07 000000610 INF: FPGA: 'ZDACW 28813' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:27.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:27.738 -07 000000462 INF: FPGA: Recv ZDACR 28813
17-03-17 20:31:27.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.898 -07 000000458 INF: FPGA: Recv ZSGSRD 29827
17-03-17 20:31:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.908 -07 000000424 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:31:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.918 -07 000000433 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:31:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.928 -07 000000541 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:31:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.938 -07 000000433 INF: FPGA: Recv ZSGSRD 29821
17-03-17 20:31:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.948 -07 000000424 INF: FPGA: Recv ZSGSRD 29823
17-03-17 20:31:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:31:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:31:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29820
17-03-17 20:31:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:27.988 -07 000000424 INF: FPGA: Recv ZSGSRD 29818
17-03-17 20:31:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:27.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:27.998 -07 000000512 INF: FPGA: Recv ZPIEZORD 25521
17-03-17 20:31:28.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:28.008 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.4 V.
17-03-17 20:31:28.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29815 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:31:28.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 5, negNoise = 7
17-03-17 20:31:28.008 -07 000000610 INF: Z Motor: After move to -0.131897, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:28.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:31:28.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:28.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:28.008 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:28.008 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:28.008 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:28.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:28.008 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:28.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:28.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:28.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:28.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:28.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:28.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:28.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:28.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:28.018 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:28.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:31:28.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:31:28.028 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:31:28.028 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:28.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28990 150\n [Camera]
17-03-17 20:31:28.228 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:28.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:28.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:28.648 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:28.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:28.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:28.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:28.648 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:28.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:31:28.648 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:28.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:31:28.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28990 800
17-03-17 20:31:28.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:29.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:31:29.028 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:31:29.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:29.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:31:29.028 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:31:29.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:29.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:29.038 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:29.038 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:31:29.038 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:31:29.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:29.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:29.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:29.188 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:29.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:29.188 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:29.308 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:29.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 20:31:29.308 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:29.308 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:31:29.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:31:29.378 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:29.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28990 150' command took 2 ms to send, 1347 ms to get response, and 1352 ms overall
17-03-17 20:31:29.378 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132513
17-03-17 20:31:29.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13251 mm
17-03-17 20:31:29.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:29.388 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:31:29.388 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:31:29.388 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:29.388 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = False)
17-03-17 20:31:29.388 -07 000000458 INF: Z Motor: Moving to -0.132515 mm, started at -0.131906 mm, distance = -0.61 um
17-03-17 20:31:29.388 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:31:29.398 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:31:29.398 -07 000000458 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-17 20:31:29.398 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:29.398 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:29.398 -07 000000480 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:31:29.398 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:31:29.408 -07 000000458 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:31:29.408 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:29.408 -07 000000541 INF: FPGA: Recv ZDACR 28948
17-03-17 20:31:29.418 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:29.418 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:29.418 -07 000000458 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 20:31:29.658 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.020806,
17-03-17 20:31:29.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:31:29.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:31:29.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:29.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:29.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:31:29.688 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:31:29.688 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:29.698 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:29.698 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:31:29.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 20:31:29.788 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:31:29.788 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:31:29.828 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:29.828 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:31:29.838 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:29.838 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:29.838 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:31:29.838 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:31:30.788 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:30.788 -07 000000512 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:31:30.798 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.798 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:30.818 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:30.818 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:30.818 -07 000000480 INF: Y Motor: Moved to 64.8789 after 1430 ms (table move)
17-03-17 20:31:30.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132515 mm (DAC = 28948)
17-03-17 20:31:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.818 -07 000000482 INF: FPGA: Recv ZSGSRD 29914
17-03-17 20:31:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29909
17-03-17 20:31:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.838 -07 000000458 INF: FPGA: Recv ZSGSRD 29912
17-03-17 20:31:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29920
17-03-17 20:31:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29921
17-03-17 20:31:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.868 -07 000000547 INF: FPGA: Recv ZSGSRD 29919
17-03-17 20:31:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.878 -07 000000480 INF: FPGA: Recv ZSGSRD 29913
17-03-17 20:31:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29919
17-03-17 20:31:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.898 -07 000000480 INF: FPGA: Recv ZSGSRD 29912
17-03-17 20:31:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:30.908 -07 000000547 INF: FPGA: Recv ZSGSRD 29914
17-03-17 20:31:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:30.918 -07 000000480 INF: FPGA: Recv ZPIEZORD 25651
17-03-17 20:31:30.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.4 V.
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29915 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29909 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29915, posNoise = 6, negNoise = 6
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: After move to -0.132515, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:31:30.928 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:30.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:31:30.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:30.978 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.132503658231914. ----------
17-03-17 20:31:30.978 -07 000000610 INF: Cycle	39	Tile	7	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:30.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28771, sync = True, waitForSettling = True)
17-03-17 20:31:30.978 -07 000000610 INF: Z Motor: Moving to -0.131705 mm, started at -0.132504 mm, distance = 0.80 um
17-03-17 20:31:30.978 -07 000000610 INF: FPGA: Xmit ZDACW 28771\n [Z Motor]
17-03-17 20:31:30.978 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:31:30.988 -07 000000610 INF: FPGA: 'ZDACW 28771' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:30.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:30.988 -07 000000547 INF: FPGA: Recv ZDACR 28771
17-03-17 20:31:30.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:30.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29787
17-03-17 20:31:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29797
17-03-17 20:31:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29794
17-03-17 20:31:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29783
17-03-17 20:31:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.188 -07 000000480 INF: FPGA: Recv ZSGSRD 29788
17-03-17 20:31:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29791
17-03-17 20:31:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.208 -07 000000480 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:31:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.218 -07 000000482 INF: FPGA: Recv ZSGSRD 29790
17-03-17 20:31:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29792
17-03-17 20:31:31.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:31.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29794
17-03-17 20:31:31.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:31.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 25465
17-03-17 20:31:31.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:31.258 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 20:31:31.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29791 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29792 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29783 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:31:31.258 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29791, posNoise = 6, negNoise = 8
17-03-17 20:31:31.258 -07 000000610 INF: Z Motor: After move to -0.131705, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:31.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:31:31.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:31.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:31.258 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:31.258 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:31.258 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:31.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:31.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:31.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:31.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:31.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:31.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:31.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:31.268 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:31:31.268 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:31.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:31:31.268 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:31.278 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:31:31.278 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:31:31.278 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:31:31.278 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:31:31.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28948 150\n [Camera]
17-03-17 20:31:31.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:31:31.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:31.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:31.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:31.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:31.898 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:31.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:31.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:31.898 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:31.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 20:31:31.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:31.908 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:31.908 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:31:32.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28948 800
17-03-17 20:31:32.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:32.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:31:32.278 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:31:32.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:32.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:31:32.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:31:32.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:32.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:32.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:31:32.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:32.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:31:32.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:32.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:32.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:32.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:32.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:32.438 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:32.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:32.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:31:32.448 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:32.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:31:32.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:32.628 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:32.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28948 150' command took 2 ms to send, 1346 ms to get response, and 1349 ms overall
17-03-17 20:31:32.628 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132263
17-03-17 20:31:32.628 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13226 mm
17-03-17 20:31:32.628 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:32.638 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:31:32.638 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:31:32.638 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28893, sync = True, waitForSettling = False)
17-03-17 20:31:32.638 -07 000000012 INF: Z Motor: Moving to -0.132264 mm, started at -0.131707 mm, distance = -0.56 um
17-03-17 20:31:32.638 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:32.638 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:31:32.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:32.648 -07 000000012 INF: FPGA: Xmit ZDACW 28893\n [Z Motor]
17-03-17 20:31:32.648 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:32.648 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:32.648 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:31:32.648 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:31:32.658 -07 000000012 INF: FPGA: 'ZDACW 28893' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:32.658 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:32.668 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:32.668 -07 000000569 INF: FPGA: Recv ZDACR 28893
17-03-17 20:31:32.678 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:32.678 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:31:32.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:31:32.828 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:31:32.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:32.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:31:32.828 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:31:32.828 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:32.828 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:32.828 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:31:32.828 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:32.838 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:31:33.028 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:31:33.028 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:31:33.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:33.068 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:31:33.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:33.078 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:33.078 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:31:33.078 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 20:31:34.028 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:34.028 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:31:34.038 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.038 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:34.058 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:34.058 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:31:34.058 -07 000000623 INF: Y Motor: Moved to 65.7144 after 1424 ms (table move)
17-03-17 20:31:34.058 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132264 mm (DAC = 28893)
17-03-17 20:31:34.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.068 -07 000000623 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:31:34.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:31:34.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:31:34.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.078 -07 000000623 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:31:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:31:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:31:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.108 -07 000000623 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:31:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.118 -07 000000547 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:31:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.128 -07 000000547 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:31:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:31:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.148 -07 000000547 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:31:34.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:34.158 -07 000000623 INF: FPGA: Recv ZPIEZORD 25618
17-03-17 20:31:34.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.4 V.
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29877 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29874 (-131.5 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 3, negNoise = 4
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: After move to -0.132264, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 103 ms (allowed 150 ms), total time = 1529 ms
17-03-17 20:31:34.168 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:34.218 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:31:34.218 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:34.218 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.132265962382669. ----------
17-03-17 20:31:34.218 -07 000000610 INF: Cycle	39	Tile	8	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:34.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28716, sync = True, waitForSettling = True)
17-03-17 20:31:34.218 -07 000000610 INF: Z Motor: Moving to -0.131453 mm, started at -0.132266 mm, distance = 0.81 um
17-03-17 20:31:34.218 -07 000000610 INF: FPGA: Xmit ZDACW 28716\n [Z Motor]
17-03-17 20:31:34.228 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:31:34.228 -07 000000610 INF: FPGA: 'ZDACW 28716' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 20:31:34.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:34.228 -07 000000569 INF: FPGA: Recv ZDACR 28716
17-03-17 20:31:34.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:31:34.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:34.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.388 -07 000000569 INF: FPGA: Recv ZSGSRD 29754
17-03-17 20:31:34.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:34.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.398 -07 000000424 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:31:34.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.408 -07 000000424 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:31:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.418 -07 000000424 INF: FPGA: Recv ZSGSRD 29751
17-03-17 20:31:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.428 -07 000000012 INF: FPGA: Recv ZSGSRD 29752
17-03-17 20:31:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.438 -07 000000547 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:31:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.448 -07 000000547 INF: FPGA: Recv ZSGSRD 29750
17-03-17 20:31:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.458 -07 000000547 INF: FPGA: Recv ZSGSRD 29749
17-03-17 20:31:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29755
17-03-17 20:31:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:34.478 -07 000000547 INF: FPGA: Recv ZSGSRD 29758
17-03-17 20:31:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:34.488 -07 000000547 INF: FPGA: Recv ZPIEZORD 25461
17-03-17 20:31:34.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:34.498 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.4 V.
17-03-17 20:31:34.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29753 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29758 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:31:34.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 5, negNoise = 4
17-03-17 20:31:34.498 -07 000000610 INF: Z Motor: After move to -0.131453, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:34.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:31:34.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:34.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:34.498 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:34.498 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:34.498 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:34.498 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:34.508 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:34.508 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:34.508 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:31:34.508 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:34.518 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:31:34.518 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:31:34.518 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:34.518 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:34.528 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:31:34.528 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:34.528 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:31:34.528 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:34.538 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:31:34.538 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:31:34.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28893 150\n [Camera]
17-03-17 20:31:34.738 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:35.018 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.981281,
17-03-17 20:31:35.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:35.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:35.158 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:35.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:35.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:35.158 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:35.158 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:35.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:31:35.158 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:35.158 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:31:35.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28893 800
17-03-17 20:31:35.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:35.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:31:35.528 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:31:35.528 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:35.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:31:35.538 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:31:35.538 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:35.538 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:31:35.538 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:31:35.538 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:35.548 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:31:35.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:35.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:35.698 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:35.698 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:35.698 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:31:35.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:35.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:35.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:35.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:35.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 20:31:35.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:35.888 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:35.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28893 150' command took 2 ms to send, 1345 ms to get response, and 1350 ms overall
17-03-17 20:31:35.888 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131797
17-03-17 20:31:35.888 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13180 mm
17-03-17 20:31:35.888 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:35.898 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:31:35.898 -07 000000433 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:31:35.898 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = False)
17-03-17 20:31:35.898 -07 000000547 INF: Z Motor: Moving to -0.131797 mm, started at -0.131463 mm, distance = -0.33 um
17-03-17 20:31:35.898 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:35.898 -07 000000623 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:31:35.908 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:35.908 -07 000000433 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:35.908 -07 000000433 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:35.908 -07 000000433 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:31:35.908 -07 000000547 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-17 20:31:35.908 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:31:35.918 -07 000000547 INF: FPGA: 'ZDACW 28791' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:35.918 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:35.918 -07 000000512 INF: FPGA: Recv ZDACR 28791
17-03-17 20:31:35.928 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:35.928 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:35.928 -07 000000547 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 20:31:36.088 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:31:36.088 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:31:36.088 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:36.088 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:31:36.088 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:31:36.088 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:36.088 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:36.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:31:36.088 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:36.098 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:31:36.298 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:31:36.298 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:31:36.338 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:36.348 -07 000000512 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:31:36.348 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:36.348 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:36.348 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:31:36.348 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 20:31:36.788 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:36.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:37.298 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:37.298 -07 000000458 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:31:37.308 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:37.308 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:37.328 -07 000000433 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:37.328 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:37.328 -07 000000433 INF: Y Motor: Moved to 66.5391 after 1432 ms (table move)
17-03-17 20:31:37.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131797 mm (DAC = 28791)
17-03-17 20:31:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.328 -07 000000626 INF: FPGA: Recv ZSGSRD 29804
17-03-17 20:31:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:37.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:31:37.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29815
17-03-17 20:31:37.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:31:37.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.368 -07 000000623 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:31:37.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:31:37.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.388 -07 000000576 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:31:37.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29801
17-03-17 20:31:37.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:31:37.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:31:37.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:37.428 -07 000000541 INF: FPGA: Recv ZPIEZORD 25570
17-03-17 20:31:37.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.3 V.
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29804 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29801 (-131.0 uncal um), Max = 29815 (-131.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 9, negNoise = 5
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: After move to -0.131797, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:31:37.438 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:37.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:31:37.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:37.488 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131803419108462. ----------
17-03-17 20:31:37.488 -07 000000610 INF: Cycle	39	Tile	9	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:37.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-17 20:31:37.488 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.131803 mm, distance = 0.82 um
17-03-17 20:31:37.488 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-17 20:31:37.488 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:31:37.498 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:37.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:37.498 -07 000000458 INF: FPGA: Recv ZDACR 28614
17-03-17 20:31:37.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:31:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.668 -07 000000626 INF: FPGA: Recv ZSGSRD 29680
17-03-17 20:31:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29681
17-03-17 20:31:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:37.688 -07 000000482 INF: FPGA: Recv ZSGSRD 29682
17-03-17 20:31:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.528 -07 000000576 INF: FPGA: Recv ZSGSRD 29679
17-03-17 20:31:38.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 820 ms to get response, and 830 ms overall
17-03-17 20:31:38.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.528 -07 000000576 INF: FPGA: Recv ZSGSRD 29684
17-03-17 20:31:38.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29683
17-03-17 20:31:38.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29678
17-03-17 20:31:38.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.558 -07 000000569 INF: FPGA: Recv ZSGSRD 29675
17-03-17 20:31:38.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:38.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29681
17-03-17 20:31:38.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:38.578 -07 000000569 INF: FPGA: Recv ZPIEZORD 25400
17-03-17 20:31:38.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:38.588 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.4 V.
17-03-17 20:31:38.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29680 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29681 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:38.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29680, posNoise = 4, negNoise = 5
17-03-17 20:31:38.588 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:38.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 1096 ms)
17-03-17 20:31:38.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:38.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:38.588 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:38.588 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:38.588 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:38.588 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:38.588 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:38.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:38.588 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:38.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:38.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:38.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:38.598 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:31:38.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:38.598 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:31:38.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:38.608 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:31:38.608 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:31:38.608 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:31:38.608 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:31:38.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28791 150\n [Camera]
17-03-17 20:31:38.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:39.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-17 20:31:39.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-17 20:31:39.228 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:39.228 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:39.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:31:39.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-17 20:31:39.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-17 20:31:39.238 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:39.238 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:39.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:31:39.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28791 800
17-03-17 20:31:39.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:39.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:31:39.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 20:31:39.598 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:39.608 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:39.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:31:39.608 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:31:39.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:39.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:39.608 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:31:39.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:31:39.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:39.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:39.768 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:39.768 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:39.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:31:39.778 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:39.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:39.778 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:39.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:39.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:31:39.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:31:39.968 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:39.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28791 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:31:39.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:31:39.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.1309939683786. ------
17-03-17 20:31:39.968 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13782 mm
17-03-17 20:31:39.968 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:39.968 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:39.968 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:31:39.968 -07 000000541 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:31:39.968 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30107, sync = True, waitForSettling = False)
17-03-17 20:31:39.968 -07 000000482 INF: Z Motor: Moving to -0.137821 mm, started at -0.130994 mm, distance = -6.83 um
17-03-17 20:31:39.978 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:39.988 -07 000000482 INF: FPGA: Xmit ZDACW 30107\n [Z Motor]
17-03-17 20:31:40.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:31:40.158 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:31:40.158 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:40.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:31:40.168 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:31:40.168 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:40.168 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:40.168 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:31:40.168 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:40.178 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:31:40.178 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:40.178 -07 000000623 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:31:40.178 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:31:40.178 -07 000000482 INF: FPGA: 'ZDACW 30107' command took 0 ms to send, 184 ms to get response, and 205 ms overall
17-03-17 20:31:40.178 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:40.178 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 204 ms to get response, and 208 ms overall
17-03-17 20:31:40.178 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 194 ms to get response, and 205 ms overall
17-03-17 20:31:40.178 -07 000000541 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:40.178 -07 000000541 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:40.178 -07 000000541 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:31:40.178 -07 000000623 INF: FPGA: Recv ZDACR 30107
17-03-17 20:31:40.188 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:40.188 -07 000000482 INF: Z Motor: MoveAbsStepped took 210 ms (did NOT wait for settling yet))
17-03-17 20:31:40.188 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:31:40.198 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:40.388 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:31:40.388 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 20:31:40.488 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.005817,
17-03-17 20:31:40.568 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:31:40.568 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:31:40.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:40.608 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:31:40.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:40.618 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:40.618 -07 000000541 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:31:40.618 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 20:31:41.568 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:41.568 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:31:41.578 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:41.578 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:41.598 -07 000000541 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:41.598 -07 000000541 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:41.598 -07 000000541 INF: Y Motor: Moved to 67.3721 after 1625 ms (table move)
17-03-17 20:31:41.598 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137821 mm (DAC = 30107)
17-03-17 20:31:41.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.608 -07 000000012 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:31:41.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:31:41.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.608 -07 000000482 INF: FPGA: Recv ZSGSRD 30741
17-03-17 20:31:41.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30743
17-03-17 20:31:41.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.628 -07 000000576 INF: FPGA: Recv ZSGSRD 30740
17-03-17 20:31:41.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.638 -07 000000458 INF: FPGA: Recv ZSGSRD 30751
17-03-17 20:31:41.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30741
17-03-17 20:31:41.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.658 -07 000000482 INF: FPGA: Recv ZSGSRD 30745
17-03-17 20:31:41.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.668 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.668 -07 000000623 INF: FPGA: Recv ZSGSRD 30740
17-03-17 20:31:41.678 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.678 -07 000000458 INF: FPGA: Recv ZSGSRD 30737
17-03-17 20:31:41.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:41.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30739
17-03-17 20:31:41.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.698 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:41.698 -07 000000424 INF: FPGA: Recv ZPIEZORD 26776
17-03-17 20:31:41.708 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -8.7 V.
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30742 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30741 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30737 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30742, posNoise = 9, negNoise = 5
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: After move to -0.137821, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: Settle wait time = 1628 ms, measure time = 103 ms (allowed 150 ms), total time = 1731 ms
17-03-17 20:31:41.708 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:41.758 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1783 ms
17-03-17 20:31:41.758 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:41.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:41.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:41.758 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:41.758 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:41.758 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:31:41.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:41.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:41.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:31:41.768 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:41.768 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:31:41.778 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:31:41.778 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:31:41.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:31:41.788 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:41.828 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:31:42.028 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:31:42.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:31:42.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:31:42.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 20:31:42.068 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:31:42.068 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:31:42.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:31:42.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:31:42.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:42.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:31:42.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:31:42.168 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:42.168 -07 000000458 INF: Autofocus start
17-03-17 20:31:42.168 -07 000000458 INF: MeasureProfile start
17-03-17 20:31:42.168 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:42.178 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:42.178 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:31:42.178 -07 000000458 INF: MeasureProfile done
17-03-17 20:31:42.178 -07 000000458 INF: X=-36  Z correction [um]=-0.1786445
17-03-17 20:31:42.178 -07 000000458 INF: Autofocus finished
17-03-17 20:31:42.378 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:31:42.378 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:31:42.378 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.13781648167315. ----------
17-03-17 20:31:42.378 -07 000000610 INF: Cycle	39	Tile	10	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:42.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28581, sync = True, waitForSettling = True)
17-03-17 20:31:42.388 -07 000000610 INF: Z Motor: Moving to -0.130835 mm, started at -0.137816 mm, distance = 6.98 um
17-03-17 20:31:42.388 -07 000000610 INF: FPGA: Xmit ZDACW 28581\n [Z Motor]
17-03-17 20:31:42.388 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:31:42.398 -07 000000610 INF: FPGA: 'ZDACW 28581' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:42.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:42.398 -07 000000012 INF: FPGA: Recv ZDACR 28581
17-03-17 20:31:42.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:42.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.558 -07 000000482 INF: FPGA: Recv ZSGSRD 29658
17-03-17 20:31:42.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29661
17-03-17 20:31:42.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.578 -07 000000012 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:31:42.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.588 -07 000000626 INF: FPGA: Recv ZSGSRD 29654
17-03-17 20:31:42.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.598 -07 000000482 INF: FPGA: Recv ZSGSRD 29660
17-03-17 20:31:42.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29655
17-03-17 20:31:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.618 -07 000000541 INF: FPGA: Recv ZSGSRD 29658
17-03-17 20:31:42.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:31:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29650
17-03-17 20:31:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:42.648 -07 000000458 INF: FPGA: Recv ZSGSRD 29663
17-03-17 20:31:42.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:42.658 -07 000000541 INF: FPGA: Recv ZPIEZORD 25354
17-03-17 20:31:42.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:42.668 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.4 V.
17-03-17 20:31:42.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29658 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29658 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29663 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:31:42.668 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29658, posNoise = 5, negNoise = 8
17-03-17 20:31:42.668 -07 000000610 INF: Z Motor: After move to -0.130835, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:42.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:31:42.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:42.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:42.668 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:42.668 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:42.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:42.668 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:42.668 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:42.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:42.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:42.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:42.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:42.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:42.678 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:42.678 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:42.678 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:31:42.678 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:42.688 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:31:42.688 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:42.688 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:31:42.688 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:42.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28758 150\n [Camera]
17-03-17 20:31:42.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:43.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:43.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:43.308 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:43.308 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:43.308 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:31:43.308 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:43.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:43.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:43.308 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:43.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:31:43.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28758 800
17-03-17 20:31:43.648 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:43.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:31:43.688 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:31:43.688 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:43.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:31:43.688 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:31:43.688 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:43.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:43.688 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:31:43.688 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:43.698 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:31:43.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:43.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:43.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:43.848 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:43.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 20:31:43.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:43.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:43.848 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:43.848 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:43.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 20:31:44.038 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:44.038 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:44.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28758 150' command took 2 ms to send, 1344 ms to get response, and 1349 ms overall
17-03-17 20:31:44.038 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131309
17-03-17 20:31:44.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13131 mm
17-03-17 20:31:44.038 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:44.038 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:31:44.048 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:31:44.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:44.048 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28684, sync = True, waitForSettling = False)
17-03-17 20:31:44.048 -07 000000626 INF: Z Motor: Moving to -0.131307 mm, started at -0.130853 mm, distance = -0.45 um
17-03-17 20:31:44.048 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:31:44.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:31:44.058 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:44.058 -07 000000626 INF: FPGA: Xmit ZDACW 28684\n [Z Motor]
17-03-17 20:31:44.058 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:31:44.058 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:44.058 -07 000000623 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:31:44.068 -07 000000626 INF: FPGA: 'ZDACW 28684' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:31:44.068 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:44.078 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:44.078 -07 000000424 INF: FPGA: Recv ZDACR 28684
17-03-17 20:31:44.088 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:44.088 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:31:44.238 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:31:44.238 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:31:44.238 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:44.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:31:44.238 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:31:44.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:44.248 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:44.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:31:44.248 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:31:44.258 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:31:44.438 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:31:44.438 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:31:44.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:44.488 -07 000000576 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:31:44.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 20:31:44.488 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:44.488 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:31:44.488 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.841 mm, average velocity = 2.183 mm/sec
17-03-17 20:31:45.438 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:45.438 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:31:45.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.448 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:45.468 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:45.468 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:45.468 -07 000000623 INF: Y Motor: Moved to 68.2051 after 1421 ms (table move)
17-03-17 20:31:45.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131307 mm (DAC = 28684)
17-03-17 20:31:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29735
17-03-17 20:31:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.478 -07 000000576 INF: FPGA: Recv ZSGSRD 29726
17-03-17 20:31:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.488 -07 000000541 INF: FPGA: Recv ZSGSRD 29728
17-03-17 20:31:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.498 -07 000000623 INF: FPGA: Recv ZSGSRD 29731
17-03-17 20:31:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29731
17-03-17 20:31:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.518 -07 000000623 INF: FPGA: Recv ZSGSRD 29731
17-03-17 20:31:45.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.538 -07 000000424 INF: FPGA: Recv ZSGSRD 29726
17-03-17 20:31:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29721
17-03-17 20:31:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.558 -07 000000623 INF: FPGA: Recv ZSGSRD 29736
17-03-17 20:31:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29735
17-03-17 20:31:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:45.578 -07 000000623 INF: FPGA: Recv ZPIEZORD 25493
17-03-17 20:31:45.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.3 V.
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29730 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29731 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29721 (-130.5 uncal um), Max = 29736 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29730, posNoise = 6, negNoise = 9
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: After move to -0.131307, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 116 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:31:45.588 -07 000000610 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:45.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:31:45.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:45.628 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.131315178985688. ----------
17-03-17 20:31:45.628 -07 000000610 INF: Cycle	39	Tile	11	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:45.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28508, sync = True, waitForSettling = True)
17-03-17 20:31:45.628 -07 000000610 INF: Z Motor: Moving to -0.130501 mm, started at -0.131315 mm, distance = 0.81 um
17-03-17 20:31:45.628 -07 000000610 INF: FPGA: Xmit ZDACW 28508\n [Z Motor]
17-03-17 20:31:45.628 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:31:45.638 -07 000000610 INF: FPGA: 'ZDACW 28508' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:45.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:45.638 -07 000000459 INF: FPGA: Recv ZDACR 28508
17-03-17 20:31:45.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:31:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.808 -07 000000626 INF: FPGA: Recv ZSGSRD 29606
17-03-17 20:31:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:31:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.828 -07 000000547 INF: FPGA: Recv ZSGSRD 29596
17-03-17 20:31:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.848 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.004458,
17-03-17 20:31:45.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29604
17-03-17 20:31:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.878 -07 000000480 INF: FPGA: Recv ZSGSRD 29608
17-03-17 20:31:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:31:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29612
17-03-17 20:31:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.918 -07 000000480 INF: FPGA: Recv ZSGSRD 29599
17-03-17 20:31:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:31:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29605
17-03-17 20:31:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:45.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29607
17-03-17 20:31:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:45.948 -07 000000480 INF: FPGA: Recv ZPIEZORD 25318
17-03-17 20:31:45.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:45.958 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.4 V.
17-03-17 20:31:45.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29596 (-129.7 uncal um), Max = 29612 (-129.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:31:45.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 8, negNoise = 8
17-03-17 20:31:45.958 -07 000000610 INF: Z Motor: After move to -0.130501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:45.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 20:31:45.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:45.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:45.958 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:45.958 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:45.958 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:45.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:45.958 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:45.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:45.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:45.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:45.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:31:45.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:45.968 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:45.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:45.968 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:45.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:45.978 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:31:45.978 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:45.978 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:31:45.978 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:31:45.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28684 150\n [Camera]
17-03-17 20:31:46.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:46.588 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:46.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:46.598 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:46.598 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:46.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 20:31:46.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:46.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:46.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:46.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:46.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 20:31:46.788 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28684 800
17-03-17 20:31:46.788 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:46.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:46.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:31:46.978 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:31:46.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:46.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:31:46.978 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:31:46.978 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:46.988 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:46.988 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:31:46.988 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:46.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:31:47.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:47.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:47.138 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:47.138 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:47.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 20:31:47.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:47.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:47.138 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:47.138 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:47.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 20:31:47.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:31:47.328 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:47.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28684 150' command took 2 ms to send, 1348 ms to get response, and 1355 ms overall
17-03-17 20:31:47.328 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131180
17-03-17 20:31:47.338 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13118 mm
17-03-17 20:31:47.338 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:47.338 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:31:47.338 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:31:47.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:47.338 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28656, sync = True, waitForSettling = False)
17-03-17 20:31:47.338 -07 000000541 INF: Z Motor: Moving to -0.131179 mm, started at -0.130506 mm, distance = -0.67 um
17-03-17 20:31:47.338 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:31:47.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:47.348 -07 000000480 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:47.348 -07 000000541 INF: FPGA: Xmit ZDACW 28656\n [Z Motor]
17-03-17 20:31:47.348 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:31:47.348 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:47.348 -07 000000480 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:31:47.358 -07 000000541 INF: FPGA: 'ZDACW 28656' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:31:47.358 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:47.358 -07 000000623 INF: FPGA: Recv ZDACR 28656
17-03-17 20:31:47.368 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:47.368 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:47.368 -07 000000541 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 20:31:47.518 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:31:47.518 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:31:47.518 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:47.518 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:31:47.518 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:31:47.518 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:47.528 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:47.528 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:31:47.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:47.538 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:31:47.738 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:31:47.738 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:31:47.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:47.788 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:31:47.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:47.788 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:47.788 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:31:47.788 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.120 mm/sec
17-03-17 20:31:48.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:48.738 -07 000000541 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:31:48.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:48.748 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:48.768 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:48.768 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:48.768 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1428 ms (table move)
17-03-17 20:31:48.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131179 mm (DAC = 28656)
17-03-17 20:31:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:31:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.778 -07 000000623 INF: FPGA: Recv ZSGSRD 29708
17-03-17 20:31:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.788 -07 000000623 INF: FPGA: Recv ZSGSRD 29710
17-03-17 20:31:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:31:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29716
17-03-17 20:31:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29713
17-03-17 20:31:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29708
17-03-17 20:31:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.838 -07 000000547 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:31:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:31:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:48.858 -07 000000480 INF: FPGA: Recv ZSGSRD 29707
17-03-17 20:31:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:48.868 -07 000000547 INF: FPGA: Recv ZPIEZORD 25468
17-03-17 20:31:48.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.3 V.
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29708 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29708 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29704 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29708, posNoise = 8, negNoise = 4
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: After move to -0.131179, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:31:48.878 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:48.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:31:48.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:48.928 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13117384631857. ----------
17-03-17 20:31:48.928 -07 000000610 INF: Cycle	39	Tile	12	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:48.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28479, sync = True, waitForSettling = True)
17-03-17 20:31:48.928 -07 000000610 INF: Z Motor: Moving to -0.130369 mm, started at -0.131174 mm, distance = 0.81 um
17-03-17 20:31:48.928 -07 000000610 INF: FPGA: Xmit ZDACW 28479\n [Z Motor]
17-03-17 20:31:48.928 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:31:48.938 -07 000000610 INF: FPGA: 'ZDACW 28479' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:48.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:48.938 -07 000000462 INF: FPGA: Recv ZDACR 28479
17-03-17 20:31:48.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:48.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:49.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29581
17-03-17 20:31:49.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.108 -07 000000462 INF: FPGA: Recv ZSGSRD 29587
17-03-17 20:31:49.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29577
17-03-17 20:31:49.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.128 -07 000000547 INF: FPGA: Recv ZSGSRD 29590
17-03-17 20:31:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29586
17-03-17 20:31:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29582
17-03-17 20:31:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29583
17-03-17 20:31:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:31:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29586
17-03-17 20:31:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:49.188 -07 000000547 INF: FPGA: Recv ZSGSRD 29583
17-03-17 20:31:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:49.198 -07 000000547 INF: FPGA: Recv ZPIEZORD 25294
17-03-17 20:31:49.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:49.208 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.4 V.
17-03-17 20:31:49.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29583 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29577 (-129.6 uncal um), Max = 29590 (-129.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:49.208 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 7, negNoise = 6
17-03-17 20:31:49.208 -07 000000610 INF: Z Motor: After move to -0.130369, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:49.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:31:49.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:49.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:49.208 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:49.208 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:49.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:49.208 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:49.208 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:49.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:49.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:49.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:49.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:49.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:49.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:49.208 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:49.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:49.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:49.228 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:31:49.228 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:31:49.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:31:49.228 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:31:49.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28656 150\n [Camera]
17-03-17 20:31:49.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:31:49.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:49.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:49.848 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:49.848 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:49.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 20:31:49.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:49.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:49.848 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:49.848 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:49.848 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 20:31:50.038 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28656 800
17-03-17 20:31:50.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:50.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:31:50.228 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:31:50.228 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:50.228 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:31:50.228 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:31:50.228 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:50.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:50.228 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:31:50.238 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:31:50.238 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:31:50.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:50.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:50.388 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:50.388 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:50.388 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 20:31:50.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:50.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:50.388 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:50.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:50.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 20:31:50.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:50.578 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:50.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28656 150' command took 2 ms to send, 1339 ms to get response, and 1352 ms overall
17-03-17 20:31:50.588 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130888
17-03-17 20:31:50.588 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13089 mm
17-03-17 20:31:50.588 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:50.588 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:31:50.588 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:31:50.588 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:50.588 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 28593, sync = True, waitForSettling = False)
17-03-17 20:31:50.588 -07 000000480 INF: Z Motor: Moving to -0.130890 mm, started at -0.130371 mm, distance = -0.52 um
17-03-17 20:31:50.588 -07 000000623 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:31:50.598 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:50.598 -07 000000462 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:50.598 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:50.598 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:31:50.598 -07 000000480 INF: FPGA: Xmit ZDACW 28593\n [Z Motor]
17-03-17 20:31:50.598 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:31:50.608 -07 000000480 INF: FPGA: 'ZDACW 28593' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:31:50.608 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:50.618 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:50.618 -07 000000569 INF: FPGA: Recv ZDACR 28593
17-03-17 20:31:50.628 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:50.628 -07 000000480 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 20:31:50.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:31:50.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:31:50.768 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:50.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:31:50.768 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:31:50.768 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:50.778 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:50.778 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:31:50.778 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:50.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:31:50.988 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:31:50.988 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 20:31:51.018 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:51.028 -07 000000512 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:31:51.028 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:31:51.028 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:51.028 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:31:51.028 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.167 mm/sec
17-03-17 20:31:51.238 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.016692,
17-03-17 20:31:51.788 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:51.978 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:51.978 -07 000000482 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:31:51.988 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:51.988 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:52.008 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:52.008 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:31:52.008 -07 000000462 INF: Y Motor: Moved to 69.8638 after 1417 ms (table move)
17-03-17 20:31:52.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130890 mm (DAC = 28593)
17-03-17 20:31:52.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.008 -07 000000458 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:31:52.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29662
17-03-17 20:31:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.028 -07 000000458 INF: FPGA: Recv ZSGSRD 29664
17-03-17 20:31:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29672
17-03-17 20:31:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29662
17-03-17 20:31:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29664
17-03-17 20:31:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:31:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.078 -07 000000480 INF: FPGA: Recv ZSGSRD 29660
17-03-17 20:31:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29667
17-03-17 20:31:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.098 -07 000000569 INF: FPGA: Recv ZSGSRD 29668
17-03-17 20:31:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:52.108 -07 000000623 INF: FPGA: Recv ZPIEZORD 25423
17-03-17 20:31:52.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.3 V.
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29664 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29663 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29659 (-130.1 uncal um), Max = 29672 (-130.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29664, posNoise = 8, negNoise = 5
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: After move to -0.130890, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 106 ms (allowed 150 ms), total time = 1525 ms
17-03-17 20:31:52.118 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:52.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 20:31:52.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:52.168 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.130891180984332. ----------
17-03-17 20:31:52.168 -07 000000610 INF: Cycle	39	Tile	13	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:52.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28416, sync = True, waitForSettling = True)
17-03-17 20:31:52.168 -07 000000610 INF: Z Motor: Moving to -0.130080 mm, started at -0.130891 mm, distance = 0.81 um
17-03-17 20:31:52.168 -07 000000610 INF: FPGA: Xmit ZDACW 28416\n [Z Motor]
17-03-17 20:31:52.168 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:31:52.178 -07 000000610 INF: FPGA: 'ZDACW 28416' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:52.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:52.178 -07 000000512 INF: FPGA: Recv ZDACR 28416
17-03-17 20:31:52.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:52.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29544
17-03-17 20:31:52.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:52.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.348 -07 000000547 INF: FPGA: Recv ZSGSRD 29544
17-03-17 20:31:52.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.358 -07 000000458 INF: FPGA: Recv ZSGSRD 29535
17-03-17 20:31:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.368 -07 000000623 INF: FPGA: Recv ZSGSRD 29539
17-03-17 20:31:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.378 -07 000000458 INF: FPGA: Recv ZSGSRD 29539
17-03-17 20:31:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:52.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.388 -07 000000623 INF: FPGA: Recv ZSGSRD 29537
17-03-17 20:31:52.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.398 -07 000000458 INF: FPGA: Recv ZSGSRD 29535
17-03-17 20:31:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.408 -07 000000569 INF: FPGA: Recv ZSGSRD 29535
17-03-17 20:31:52.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29538
17-03-17 20:31:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:52.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29537
17-03-17 20:31:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:52.438 -07 000000623 INF: FPGA: Recv ZPIEZORD 25242
17-03-17 20:31:52.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:52.448 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.4 V.
17-03-17 20:31:52.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29544 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:31:52.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 6, negNoise = 3
17-03-17 20:31:52.448 -07 000000610 INF: Z Motor: After move to -0.130080, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:52.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:31:52.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:52.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:52.448 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:52.448 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:52.448 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:52.448 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:52.448 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:52.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:52.448 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:52.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:52.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:52.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:52.458 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:52.458 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:52.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:52.458 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:52.468 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:31:52.468 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:31:52.468 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:31:52.468 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:31:52.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28593 150\n [Camera]
17-03-17 20:31:52.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:53.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:53.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:53.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:53.088 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:53.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:53.098 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:53.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 20:31:53.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:53.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:53.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 20:31:53.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28593 800
17-03-17 20:31:53.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-17 20:31:53.468 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:31:53.468 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:31:53.468 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:53.468 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:31:53.468 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:31:53.468 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:53.478 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:31:53.478 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:53.478 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:31:53.478 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:31:53.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-17 20:31:53.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-17 20:31:53.638 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:53.638 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:53.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 20:31:53.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-17 20:31:53.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-17 20:31:53.638 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:53.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:53.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:31:53.828 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:31:53.828 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:53.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28593 150' command took 2 ms to send, 1341 ms to get response, and 1349 ms overall
17-03-17 20:31:53.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:31:53.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.13008173025447. ------
17-03-17 20:31:53.828 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:53.828 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13640 mm
17-03-17 20:31:53.828 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:53.828 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:31:53.828 -07 000000458 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:31:53.828 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29796, sync = True, waitForSettling = False)
17-03-17 20:31:53.828 -07 000000012 INF: Z Motor: Moving to -0.136397 mm, started at -0.130082 mm, distance = -6.32 um
17-03-17 20:31:53.828 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:53.838 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:53.838 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:53.838 -07 000000576 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:31:53.848 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:53.848 -07 000000458 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:53.848 -07 000000458 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:53.848 -07 000000458 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:31:53.848 -07 000000012 INF: FPGA: Xmit ZDACW 29796\n [Z Motor]
17-03-17 20:31:53.848 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:31:53.858 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:31:53.858 -07 000000012 INF: FPGA: 'ZDACW 29796' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:31:53.868 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:53.878 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:53.878 -07 000000576 INF: FPGA: Recv ZDACR 29796
17-03-17 20:31:53.888 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:31:53.888 -07 000000012 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:31:54.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:31:54.038 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:31:54.038 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:54.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:31:54.048 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:31:54.058 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:31:54.058 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:31:54.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:31:54.168 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:31:54.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:54.168 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:54.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 539 ms.
17-03-17 20:31:54.238 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:31:54.238 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:31:54.278 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:54.288 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:31:54.288 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 20:31:54.288 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:54.288 -07 000000458 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:31:54.288 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 20:31:55.238 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:55.238 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:31:55.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.248 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:55.268 -07 000000458 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:55.268 -07 000000458 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:55.268 -07 000000458 INF: Y Motor: Moved to 70.6885 after 1437 ms (table move)
17-03-17 20:31:55.268 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136397 mm (DAC = 29796)
17-03-17 20:31:55.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.278 -07 000000424 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:31:55.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:55.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30529
17-03-17 20:31:55.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30521
17-03-17 20:31:55.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30516
17-03-17 20:31:55.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.318 -07 000000576 INF: FPGA: Recv ZSGSRD 30526
17-03-17 20:31:55.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30519
17-03-17 20:31:55.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.338 -07 000000576 INF: FPGA: Recv ZSGSRD 30518
17-03-17 20:31:55.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.348 -07 000000547 INF: FPGA: Recv ZSGSRD 30516
17-03-17 20:31:55.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30522
17-03-17 20:31:55.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:55.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30527
17-03-17 20:31:55.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.378 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:55.378 -07 000000576 INF: FPGA: Recv ZPIEZORD 26553
17-03-17 20:31:55.388 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.7 V.
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30529 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 7, negNoise = 6
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: After move to -0.136397, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: Settle wait time = 1440 ms, measure time = 111 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:31:55.388 -07 000000541 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:55.428 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:31:55.428 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:55.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:55.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:55.428 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:55.428 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:55.428 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:31:55.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:55.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:55.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:31:55.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:55.438 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:31:55.448 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:31:55.448 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:31:55.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:31:55.498 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:31:55.698 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:31:55.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:31:55.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:31:55.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) start.
17-03-17 20:31:55.738 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:31:55.738 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:31:55.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:31:55.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:31:55.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:55.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:31:55.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:31:55.838 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:31:55.838 -07 000000424 INF: Autofocus start
17-03-17 20:31:55.838 -07 000000424 INF: MeasureProfile start
17-03-17 20:31:55.838 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:31:55.848 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:55.848 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:31:55.848 -07 000000424 INF: MeasureProfile done
17-03-17 20:31:55.848 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:31:55.848 -07 000000424 INF: Autofocus finished
17-03-17 20:31:56.048 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:31:56.048 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:31:56.048 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136403155001963. ----------
17-03-17 20:31:56.048 -07 000000610 INF: Cycle	39	Tile	14	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:56.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28291, sync = True, waitForSettling = True)
17-03-17 20:31:56.058 -07 000000610 INF: Z Motor: Moving to -0.129508 mm, started at -0.136403 mm, distance = 6.90 um
17-03-17 20:31:56.058 -07 000000610 INF: FPGA: Xmit ZDACW 28291\n [Z Motor]
17-03-17 20:31:56.058 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:31:56.068 -07 000000610 INF: FPGA: 'ZDACW 28291' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:31:56.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:56.068 -07 000000626 INF: FPGA: Recv ZDACR 28291
17-03-17 20:31:56.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.228 -07 000000433 INF: FPGA: Recv ZSGSRD 29450
17-03-17 20:31:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.238 -07 000000626 INF: FPGA: Recv ZSGSRD 29450
17-03-17 20:31:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.248 -07 000000433 INF: FPGA: Recv ZSGSRD 29456
17-03-17 20:31:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.258 -07 000000626 INF: FPGA: Recv ZSGSRD 29451
17-03-17 20:31:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.268 -07 000000459 INF: FPGA: Recv ZSGSRD 29444
17-03-17 20:31:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.288 -07 000000424 INF: FPGA: Recv ZSGSRD 29453
17-03-17 20:31:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:31:56.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.298 -07 000000576 INF: FPGA: Recv ZSGSRD 29444
17-03-17 20:31:56.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29446
17-03-17 20:31:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29447
17-03-17 20:31:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:56.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29453
17-03-17 20:31:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:56.338 -07 000000576 INF: FPGA: Recv ZPIEZORD 25170
17-03-17 20:31:56.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:56.348 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.4 V.
17-03-17 20:31:56.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29449 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29444 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:31:56.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29449, posNoise = 7, negNoise = 5
17-03-17 20:31:56.348 -07 000000610 INF: Z Motor: After move to -0.129508, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:56.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 20:31:56.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:31:56.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:31:56.348 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:31:56.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:31:56.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:31:56.348 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:31:56.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:31:56.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:31:56.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:31:56.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:31:56.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:31:56.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:31:56.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:31:56.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:31:56.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:31:56.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:31:56.368 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:31:56.368 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:31:56.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:31:56.368 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:31:56.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28467 150\n [Camera]
17-03-17 20:31:56.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:31:56.598 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 4.011254,
17-03-17 20:31:56.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:31:56.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:31:56.988 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:31:56.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:31:56.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:56.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:31:56.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:31:56.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:56.998 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:56.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:31:56.998 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:56.998 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:31:57.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28467 800
17-03-17 20:31:57.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:31:57.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:31:57.368 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:31:57.368 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:57.378 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:57.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:31:57.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:31:57.378 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:57.378 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:57.378 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:31:57.388 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:31:57.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:31:57.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:31:57.528 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:31:57.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:31:57.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:31:57.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:31:57.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:31:57.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:31:57.648 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:31:57.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:31:57.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:31:57.718 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:31:57.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28467 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-17 20:31:57.718 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129992
17-03-17 20:31:57.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12999 mm
17-03-17 20:31:57.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:31:57.728 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28397, sync = True, waitForSettling = False)
17-03-17 20:31:57.728 -07 000000547 INF: Z Motor: Moving to -0.129993 mm, started at -0.129510 mm, distance = -0.48 um
17-03-17 20:31:57.728 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:31:57.728 -07 000000623 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 20:31:57.728 -07 000000547 INF: FPGA: Xmit ZDACW 28397\n [Z Motor]
17-03-17 20:31:57.738 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:57.738 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:31:57.738 -07 000000547 INF: FPGA: 'ZDACW 28397' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:31:57.738 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:31:57.748 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:57.748 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:31:57.748 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:57.748 -07 000000512 INF: FPGA: Recv ZDACR 28397
17-03-17 20:31:57.748 -07 000000623 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:31:57.748 -07 000000623 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:31:57.758 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:31:57.758 -07 000000547 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:31:57.758 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:31:58.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:31:58.028 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:31:58.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:58.038 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:58.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:31:58.038 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:31:58.038 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:31:58.038 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:31:58.038 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:31:58.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:31:58.128 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:31:58.128 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 382 ms overall
17-03-17 20:31:58.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:58.168 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:31:58.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:31:58.178 -07 000000623 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:58.178 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:31:58.178 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.210 mm/sec
17-03-17 20:31:59.128 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:31:59.128 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:31:59.138 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:59.138 -07 000000623 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:31:59.158 -07 000000623 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:31:59.158 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:31:59.158 -07 000000623 INF: Y Motor: Moved to 71.5190 after 1424 ms (table move)
17-03-17 20:31:59.158 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129993 mm (DAC = 28397)
17-03-17 20:31:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29525
17-03-17 20:31:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:31:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.168 -07 000000012 INF: FPGA: Recv ZSGSRD 29520
17-03-17 20:31:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29520
17-03-17 20:31:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.188 -07 000000458 INF: FPGA: Recv ZSGSRD 29526
17-03-17 20:31:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29534
17-03-17 20:31:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.208 -07 000000012 INF: FPGA: Recv ZSGSRD 29529
17-03-17 20:31:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29524
17-03-17 20:31:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29517
17-03-17 20:31:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29521
17-03-17 20:31:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.248 -07 000000462 INF: FPGA: Recv ZSGSRD 29525
17-03-17 20:31:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:31:59.258 -07 000000458 INF: FPGA: Recv ZPIEZORD 25243
17-03-17 20:31:59.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.4 V.
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29517 (-129.2 uncal um), Max = 29534 (-129.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 10, negNoise = 7
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: After move to -0.129993, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 20:31:59.268 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:31:59.318 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:31:59.318 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:31:59.318 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129991791284486. ----------
17-03-17 20:31:59.318 -07 000000610 INF: Cycle	39	Tile	15	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:31:59.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28220, sync = True, waitForSettling = True)
17-03-17 20:31:59.318 -07 000000610 INF: Z Motor: Moving to -0.129183 mm, started at -0.129992 mm, distance = 0.81 um
17-03-17 20:31:59.318 -07 000000610 INF: FPGA: Xmit ZDACW 28220\n [Z Motor]
17-03-17 20:31:59.318 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:31:59.328 -07 000000610 INF: FPGA: 'ZDACW 28220' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:31:59.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:31:59.328 -07 000000623 INF: FPGA: Recv ZDACR 28220
17-03-17 20:31:59.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:31:59.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.488 -07 000000576 INF: FPGA: Recv ZSGSRD 29400
17-03-17 20:31:59.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:31:59.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29404
17-03-17 20:31:59.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29400
17-03-17 20:31:59.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29401
17-03-17 20:31:59.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.528 -07 000000623 INF: FPGA: Recv ZSGSRD 29402
17-03-17 20:31:59.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.538 -07 000000458 INF: FPGA: Recv ZSGSRD 29397
17-03-17 20:31:59.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29397
17-03-17 20:31:59.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:31:59.558 -07 000000547 INF: FPGA: Recv ZSGSRD 29395
17-03-17 20:31:59.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:31:59.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:00.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29399
17-03-17 20:32:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 663 ms to get response, and 672 ms overall
17-03-17 20:32:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:00.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29398
17-03-17 20:32:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:00.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:00.248 -07 000000569 INF: FPGA: Recv ZPIEZORD 25137
17-03-17 20:32:00.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:00.258 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.4 V.
17-03-17 20:32:00.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29399 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29395 (-128.4 uncal um), Max = 29404 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:32:00.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29399, posNoise = 5, negNoise = 4
17-03-17 20:32:00.258 -07 000000610 INF: Z Motor: After move to -0.129183, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:00.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 936 ms)
17-03-17 20:32:00.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:00.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:00.258 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:00.258 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:32:00.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:00.258 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:00.258 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:32:00.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:32:00.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:00.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:32:00.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:32:00.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:32:00.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:32:00.268 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:32:00.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:32:00.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:32:00.268 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:32:00.268 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:32:00.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:32:00.268 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:32:00.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28397 150\n [Camera]
17-03-17 20:32:00.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:32:00.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:32:00.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:32:00.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:00.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:32:00.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:32:00.898 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:00.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:00.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1109135064, 0x0, 391868352) start.
17-03-17 20:32:00.898 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:00.898 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:32:01.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28397 800
17-03-17 20:32:01.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-17 20:32:01.278 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:32:01.278 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:32:01.278 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:01.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1109135064, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:32:01.278 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:32:01.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:01.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:32:01.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:32:01.288 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:32:01.298 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:32:01.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-17 20:32:01.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-17 20:32:01.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:01.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-17 20:32:01.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-17 20:32:01.438 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:01.548 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:01.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:32:01.548 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:01.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:32:01.628 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:32:01.628 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:32:01.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28397 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-17 20:32:01.628 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129016
17-03-17 20:32:01.628 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12902 mm
17-03-17 20:32:01.628 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:32:01.628 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:32:01.628 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:32:01.628 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:01.628 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 28184, sync = True, waitForSettling = False)
17-03-17 20:32:01.628 -07 000000458 INF: Z Motor: Moving to -0.129018 mm, started at -0.129189 mm, distance = 0.17 um
17-03-17 20:32:01.638 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:32:01.638 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:32:01.638 -07 000000569 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:01.638 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:32:01.638 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:32:01.648 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:32:01.658 -07 000000458 INF: FPGA: Xmit ZDACW 28184\n [Z Motor]
17-03-17 20:32:01.658 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:32:01.668 -07 000000458 INF: FPGA: 'ZDACW 28184' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:32:01.668 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:01.668 -07 000000512 INF: FPGA: Recv ZDACR 28184
17-03-17 20:32:01.678 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:01.678 -07 000000458 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:32:01.788 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:01.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:32:01.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:32:01.928 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:32:01.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:01.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:32:01.928 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:32:01.928 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:01.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:01.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:01.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 20:32:01.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 20:32:01.958 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.99219,
17-03-17 20:32:02.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:32:02.018 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:32:02.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:02.058 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:32:02.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:02.068 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:02.068 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:32:02.068 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.185 mm/sec
17-03-17 20:32:03.018 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:03.018 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:32:03.028 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:03.028 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:03.048 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:32:03.048 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:32:03.048 -07 000000569 INF: Y Motor: Moved to 72.3496 after 1414 ms (table move)
17-03-17 20:32:03.048 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129018 mm (DAC = 28184)
17-03-17 20:32:03.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29370
17-03-17 20:32:03.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:32:03.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29375
17-03-17 20:32:03.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.068 -07 000000462 INF: FPGA: Recv ZSGSRD 29370
17-03-17 20:32:03.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.078 -07 000000512 INF: FPGA: Recv ZSGSRD 29371
17-03-17 20:32:03.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29372
17-03-17 20:32:03.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.098 -07 000000569 INF: FPGA: Recv ZSGSRD 29373
17-03-17 20:32:03.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.108 -07 000000462 INF: FPGA: Recv ZSGSRD 29383
17-03-17 20:32:03.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29369
17-03-17 20:32:03.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.128 -07 000000462 INF: FPGA: Recv ZSGSRD 29369
17-03-17 20:32:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29373
17-03-17 20:32:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:03.148 -07 000000569 INF: FPGA: Recv ZPIEZORD 25086
17-03-17 20:32:03.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.4 V.
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29372 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29372 (-128.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29369 (-128.2 uncal um), Max = 29383 (-128.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29372, posNoise = 11, negNoise = 3
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: After move to -0.129018, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 106 ms (allowed 150 ms), total time = 1521 ms
17-03-17 20:32:03.158 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:32:03.208 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 20:32:03.208 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:32:03.208 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.129015311038938. ----------
17-03-17 20:32:03.208 -07 000000610 INF: Cycle	39	Tile	16	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:32:03.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28007, sync = True, waitForSettling = True)
17-03-17 20:32:03.208 -07 000000610 INF: Z Motor: Moving to -0.128208 mm, started at -0.129015 mm, distance = 0.81 um
17-03-17 20:32:03.208 -07 000000610 INF: FPGA: Xmit ZDACW 28007\n [Z Motor]
17-03-17 20:32:03.208 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:32:03.218 -07 000000610 INF: FPGA: 'ZDACW 28007' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:32:03.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:03.218 -07 000000012 INF: FPGA: Recv ZDACR 28007
17-03-17 20:32:03.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:32:03.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.378 -07 000000458 INF: FPGA: Recv ZSGSRD 29248
17-03-17 20:32:03.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:03.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.388 -07 000000012 INF: FPGA: Recv ZSGSRD 29248
17-03-17 20:32:03.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29244
17-03-17 20:32:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29245
17-03-17 20:32:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29248
17-03-17 20:32:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.428 -07 000000512 INF: FPGA: Recv ZSGSRD 29247
17-03-17 20:32:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.438 -07 000000482 INF: FPGA: Recv ZSGSRD 29244
17-03-17 20:32:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29250
17-03-17 20:32:03.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.458 -07 000000569 INF: FPGA: Recv ZSGSRD 29252
17-03-17 20:32:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:03.468 -07 000000012 INF: FPGA: Recv ZSGSRD 29247
17-03-17 20:32:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:03.478 -07 000000462 INF: FPGA: Recv ZPIEZORD 24933
17-03-17 20:32:03.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:03.488 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -9.5 V.
17-03-17 20:32:03.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29247 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29248 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29244 (-127.4 uncal um), Max = 29252 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:32:03.488 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29247, posNoise = 5, negNoise = 3
17-03-17 20:32:03.488 -07 000000610 INF: Z Motor: After move to -0.128208, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:03.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:32:03.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:03.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:03.488 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:03.488 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:03.488 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:32:03.488 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:32:03.488 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:32:03.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:03.488 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:32:03.488 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:32:03.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:03.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:32:03.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:32:03.498 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:32:03.498 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:32:03.498 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:32:03.508 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:32:03.508 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:32:03.508 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:32:03.508 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:32:03.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28184 150\n [Camera]
17-03-17 20:32:03.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:32:04.128 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:32:04.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:32:04.128 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:04.138 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:04.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:32:04.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:32:04.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:32:04.138 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:04.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:04.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1109135064, 0x0, 418435064) start.
17-03-17 20:32:04.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28184 800
17-03-17 20:32:04.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:32:04.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:32:04.508 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:32:04.508 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:04.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1109135064, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:32:04.508 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:32:04.508 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:04.508 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:04.508 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:32:04.518 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:04.518 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:32:04.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:32:04.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:32:04.668 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:04.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:32:04.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:32:04.678 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:04.678 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:04.678 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:32:04.678 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:04.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:32:04.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:32:04.868 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:32:04.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28184 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:32:04.868 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128742
17-03-17 20:32:04.868 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12874 mm
17-03-17 20:32:04.868 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:32:04.868 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:32:04.868 -07 000000482 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:32:04.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:04.868 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28124, sync = True, waitForSettling = False)
17-03-17 20:32:04.868 -07 000000576 INF: Z Motor: Moving to -0.128743 mm, started at -0.128212 mm, distance = -0.53 um
17-03-17 20:32:04.878 -07 000000576 INF: FPGA: Xmit ZDACW 28124\n [Z Motor]
17-03-17 20:32:04.878 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:32:04.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:32:04.878 -07 000000482 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:04.878 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:32:04.878 -07 000000482 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:32:04.878 -07 000000482 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:32:04.888 -07 000000576 INF: FPGA: 'ZDACW 28124' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:32:04.888 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:32:04.898 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:04.898 -07 000000626 INF: FPGA: Recv ZDACR 28124
17-03-17 20:32:04.908 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:32:04.908 -07 000000576 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 20:32:05.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:32:05.058 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:32:05.058 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:05.058 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:32:05.058 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:32:05.058 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:05.058 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:32:05.058 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:05.058 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:32:05.068 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:32:05.258 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:32:05.258 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-17 20:32:05.298 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:05.298 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:32:05.308 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:32:05.308 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:05.308 -07 000000482 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:32:05.308 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.195 mm/sec
17-03-17 20:32:06.258 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:06.258 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:32:06.268 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:06.268 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:06.288 -07 000000482 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:32:06.288 -07 000000482 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:32:06.288 -07 000000482 INF: Y Motor: Moved to 73.1763 after 1416 ms (table move)
17-03-17 20:32:06.288 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128743 mm (DAC = 28124)
17-03-17 20:32:06.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29325
17-03-17 20:32:06.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:32:06.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.298 -07 000000012 INF: FPGA: Recv ZSGSRD 29327
17-03-17 20:32:06.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29333
17-03-17 20:32:06.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.318 -07 000000012 INF: FPGA: Recv ZSGSRD 29340
17-03-17 20:32:06.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29334
17-03-17 20:32:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.338 -07 000000012 INF: FPGA: Recv ZSGSRD 29331
17-03-17 20:32:06.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.348 -07 000000547 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:32:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.358 -07 000000576 INF: FPGA: Recv ZSGSRD 29328
17-03-17 20:32:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29330
17-03-17 20:32:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29327
17-03-17 20:32:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:06.388 -07 000000012 INF: FPGA: Recv ZPIEZORD 25051
17-03-17 20:32:06.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.4 V.
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29330 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29329 (-128.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29321 (-127.9 uncal um), Max = 29340 (-128.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29330, posNoise = 10, negNoise = 9
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: After move to -0.128743, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 105 ms (allowed 150 ms), total time = 1522 ms
17-03-17 20:32:06.398 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:32:06.448 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 20:32:06.448 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:32:06.448 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.128745494128984. ----------
17-03-17 20:32:06.448 -07 000000610 INF: Cycle	39	Tile	17	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:32:06.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27947, sync = True, waitForSettling = True)
17-03-17 20:32:06.448 -07 000000610 INF: Z Motor: Moving to -0.127933 mm, started at -0.128745 mm, distance = 0.81 um
17-03-17 20:32:06.448 -07 000000610 INF: FPGA: Xmit ZDACW 27947\n [Z Motor]
17-03-17 20:32:06.448 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:32:06.458 -07 000000610 INF: FPGA: 'ZDACW 27947' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:32:06.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:06.458 -07 000000547 INF: FPGA: Recv ZDACR 27947
17-03-17 20:32:06.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:32:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:32:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:32:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.638 -07 000000012 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:32:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.648 -07 000000482 INF: FPGA: Recv ZSGSRD 29206
17-03-17 20:32:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:32:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:32:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.678 -07 000000569 INF: FPGA: Recv ZSGSRD 29199
17-03-17 20:32:06.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.688 -07 000000547 INF: FPGA: Recv ZSGSRD 29203
17-03-17 20:32:06.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.698 -07 000000569 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:32:06.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:06.708 -07 000000576 INF: FPGA: Recv ZSGSRD 29202
17-03-17 20:32:06.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:06.718 -07 000000482 INF: FPGA: Recv ZPIEZORD 24925
17-03-17 20:32:06.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:06.728 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.4 V.
17-03-17 20:32:06.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29205 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29205 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29198 (-127.1 uncal um), Max = 29210 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:32:06.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29205, posNoise = 5, negNoise = 7
17-03-17 20:32:06.728 -07 000000610 INF: Z Motor: After move to -0.127933, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:06.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:32:06.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:06.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:06.728 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:06.728 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:06.728 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:32:06.728 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:32:06.728 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:32:06.728 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:06.728 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:32:06.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:32:06.728 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:06.728 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:32:06.738 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:32:06.738 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:32:06.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:32:06.738 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:32:06.748 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:32:06.748 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:32:06.748 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:32:06.748 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:32:06.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28124 150\n [Camera]
17-03-17 20:32:06.788 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:32:06.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:32:07.318 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.999021,
17-03-17 20:32:07.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:32:07.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:32:07.368 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:07.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:32:07.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:32:07.378 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:07.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:32:07.378 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:07.378 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:07.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:32:07.558 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28124 800
17-03-17 20:32:07.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:32:07.748 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 20:32:07.748 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:32:07.748 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:07.748 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:07.748 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:32:07.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:32:07.758 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:32:07.758 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:07.758 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:07.768 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:32:07.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:32:07.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:32:07.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:07.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:07.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:32:07.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:32:07.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:32:07.918 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:07.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:07.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 20:32:08.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:32:08.108 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:32:08.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28124 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-17 20:32:08.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:32:08.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127942467611264. ------
17-03-17 20:32:08.128 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:32:08.128 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13433 mm
17-03-17 20:32:08.128 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:32:08.138 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:32:08.138 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:32:08.138 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:32:08.138 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:32:08.138 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:32:08.138 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29345, sync = True, waitForSettling = False)
17-03-17 20:32:08.138 -07 000000480 INF: Z Motor: Moving to -0.134333 mm, started at -0.127942 mm, distance = -6.39 um
17-03-17 20:32:08.148 -07 000000480 INF: FPGA: Xmit ZDACW 29345\n [Z Motor]
17-03-17 20:32:08.148 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:32:08.158 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:08.158 -07 000000480 INF: FPGA: 'ZDACW 29345' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:32:08.158 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:32:08.168 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:32:08.168 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:08.168 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:32:08.168 -07 000000459 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:32:08.168 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:32:08.178 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:08.178 -07 000000547 INF: FPGA: Recv ZDACR 29345
17-03-17 20:32:08.188 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:32:08.188 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:32:08.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:32:08.298 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:32:08.298 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:08.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:08.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:32:08.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:32:08.298 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:08.308 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:08.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:32:08.308 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:32:08.338 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:32:08.338 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:32:08.538 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:32:08.538 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 20:32:08.578 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:08.578 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:32:08.588 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:32:08.588 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:08.588 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:32:08.588 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-17 20:32:09.538 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:09.538 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:32:09.548 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.548 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:09.558 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:32:09.558 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:32:09.558 -07 000000459 INF: Y Motor: Moved to 74.0083 after 1422 ms (table move)
17-03-17 20:32:09.568 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134333 mm (DAC = 29345)
17-03-17 20:32:09.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.568 -07 000000433 INF: FPGA: Recv ZSGSRD 30205
17-03-17 20:32:09.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:32:09.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:32:09.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.588 -07 000000433 INF: FPGA: Recv ZSGSRD 30192
17-03-17 20:32:09.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.598 -07 000000576 INF: FPGA: Recv ZSGSRD 30203
17-03-17 20:32:09.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.608 -07 000000012 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:32:09.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.618 -07 000000480 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:32:09.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.628 -07 000000480 INF: FPGA: Recv ZSGSRD 30194
17-03-17 20:32:09.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.638 -07 000000547 INF: FPGA: Recv ZSGSRD 30198
17-03-17 20:32:09.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.648 -07 000000480 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:32:09.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:09.658 -07 000000547 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:32:09.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.668 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:09.668 -07 000000480 INF: FPGA: Recv ZPIEZORD 26209
17-03-17 20:32:09.678 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30199 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30199 (-133.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30192 (-133.5 uncal um), Max = 30205 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30199, posNoise = 6, negNoise = 7
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: After move to -0.134333, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: Settle wait time = 1424 ms, measure time = 110 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:32:09.678 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:32:09.718 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:32:09.718 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:32:09.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:09.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:09.718 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:09.718 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:09.718 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:32:09.718 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:09.718 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:09.718 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:32:09.728 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:32:09.728 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:32:09.738 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:32:09.738 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:32:09.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:32:09.788 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:32:09.988 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:32:09.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:32:09.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:32:10.098 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:32:10.098 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:32:10.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144819584, 0x0, 559484976) start.
17-03-17 20:32:10.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 351 ms to get response, and 354 ms overall
17-03-17 20:32:10.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144819584, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:32:10.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:10.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:32:10.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-17 20:32:10.298 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:32:10.298 -07 000000569 INF: Autofocus start
17-03-17 20:32:10.298 -07 000000569 INF: MeasureProfile start
17-03-17 20:32:10.298 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:32:10.308 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:10.308 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:32:10.308 -07 000000569 INF: MeasureProfile done
17-03-17 20:32:10.308 -07 000000569 INF: X=176  Z correction [um]=0.82268
17-03-17 20:32:10.308 -07 000000569 INF: Autofocus finished
17-03-17 20:32:10.508 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:32:10.508 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 20:32:10.508 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 20:32:10.508 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134328134480174. ----------
17-03-17 20:32:10.508 -07 000000610 INF: Cycle	39	Tile	18	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:32:10.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28037, sync = True, waitForSettling = True)
17-03-17 20:32:10.518 -07 000000610 INF: Z Motor: Moving to -0.128345 mm, started at -0.134328 mm, distance = 5.98 um
17-03-17 20:32:10.518 -07 000000610 INF: FPGA: Xmit ZDACW 28037\n [Z Motor]
17-03-17 20:32:10.518 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:32:10.528 -07 000000610 INF: FPGA: 'ZDACW 28037' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:32:10.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:10.528 -07 000000623 INF: FPGA: Recv ZDACR 28037
17-03-17 20:32:10.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:32:10.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29264
17-03-17 20:32:10.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29268
17-03-17 20:32:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.708 -07 000000569 INF: FPGA: Recv ZSGSRD 29270
17-03-17 20:32:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.718 -07 000000569 INF: FPGA: Recv ZSGSRD 29265
17-03-17 20:32:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.728 -07 000000569 INF: FPGA: Recv ZSGSRD 29271
17-03-17 20:32:10.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29269
17-03-17 20:32:10.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.748 -07 000000569 INF: FPGA: Recv ZSGSRD 29266
17-03-17 20:32:10.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.758 -07 000000482 INF: FPGA: Recv ZSGSRD 29269
17-03-17 20:32:10.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.768 -07 000000459 INF: FPGA: Recv ZSGSRD 29267
17-03-17 20:32:10.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:10.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29273
17-03-17 20:32:10.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:10.788 -07 000000459 INF: FPGA: Recv ZPIEZORD 24963
17-03-17 20:32:10.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:10.798 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.5 V.
17-03-17 20:32:10.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29268 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29264 (-127.5 uncal um), Max = 29273 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:32:10.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29268, posNoise = 5, negNoise = 4
17-03-17 20:32:10.798 -07 000000610 INF: Z Motor: After move to -0.128345, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:10.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:32:10.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:10.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:10.798 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:10.798 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:10.798 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:32:10.798 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:10.798 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:32:10.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:32:10.798 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:10.798 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:32:10.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:32:10.798 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:32:10.808 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:32:10.808 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:32:10.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:32:10.808 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:32:10.818 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:32:10.818 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:32:10.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:32:10.818 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:32:10.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28214 150\n [Camera]
17-03-17 20:32:11.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:32:11.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-17 20:32:11.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-17 20:32:11.438 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:11.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-17 20:32:11.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-17 20:32:11.438 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:11.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:11.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 20:32:11.448 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:11.448 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:32:11.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28214 800
17-03-17 20:32:11.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:32:11.788 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 38. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:32:11.818 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:32:11.818 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:32:11.818 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:11.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:32:11.818 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:32:11.818 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:11.818 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:32:11.818 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:32:11.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:32:11.828 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:32:11.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:32:11.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:32:11.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:11.988 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:32:11.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:32:11.988 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:12.098 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:12.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:32:12.098 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:12.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1109003936, 0x0, 391868352) start.
17-03-17 20:32:12.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-17 20:32:12.168 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:32:12.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28214 150' command took 2 ms to send, 1339 ms to get response, and 1349 ms overall
17-03-17 20:32:12.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:32:12.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128347192976195. ------
17-03-17 20:32:12.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:32:12.178 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13480 mm
17-03-17 20:32:12.178 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:32:12.178 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:32:12.178 -07 000000433 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:32:12.178 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29446, sync = True, waitForSettling = False)
17-03-17 20:32:12.178 -07 000000569 INF: Z Motor: Moving to -0.134795 mm, started at -0.128347 mm, distance = -6.45 um
17-03-17 20:32:12.188 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:12.198 -07 000000569 INF: FPGA: Xmit ZDACW 29446\n [Z Motor]
17-03-17 20:32:12.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:32:12.478 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:32:12.478 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:12.478 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:12.478 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1109003936, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:32:12.478 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:32:12.478 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:12.488 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:12.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:32:12.488 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 20:32:12.498 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:32:12.498 -07 000000482 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:32:12.498 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:32:12.498 -07 000000569 INF: FPGA: 'ZDACW 29446' command took 0 ms to send, 293 ms to get response, and 315 ms overall
17-03-17 20:32:12.498 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:12.498 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 313 ms to get response, and 318 ms overall
17-03-17 20:32:12.498 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 303 ms to get response, and 316 ms overall
17-03-17 20:32:12.498 -07 000000433 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:12.498 -07 000000433 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:32:12.498 -07 000000433 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:32:12.498 -07 000000482 INF: FPGA: Recv ZDACR 29446
17-03-17 20:32:12.508 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:12.508 -07 000000569 INF: Z Motor: MoveAbsStepped took 322 ms (did NOT wait for settling yet))
17-03-17 20:32:12.508 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:32:12.518 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:32:12.718 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:32:12.718 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 20:32:12.808 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.989471,
17-03-17 20:32:12.878 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:32:12.878 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:32:12.908 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:12.908 -07 000000459 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:32:12.918 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:12.918 -07 000000433 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:12.918 -07 000000433 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:32:12.918 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 20:32:13.868 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:13.868 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:32:13.878 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:13.878 -07 000000433 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:13.888 -07 000000433 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:32:13.888 -07 000000433 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:32:13.888 -07 000000433 INF: Y Motor: Moved to 74.8325 after 1708 ms (table move)
17-03-17 20:32:13.888 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134795 mm (DAC = 29446)
17-03-17 20:32:13.888 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.898 -07 000000626 INF: FPGA: Recv ZSGSRD 30266
17-03-17 20:32:13.898 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:32:13.898 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.898 -07 000000433 INF: FPGA: Recv ZSGSRD 30279
17-03-17 20:32:13.908 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:32:13.908 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.908 -07 000000541 INF: FPGA: Recv ZSGSRD 30269
17-03-17 20:32:13.918 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.918 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.918 -07 000000569 INF: FPGA: Recv ZSGSRD 30270
17-03-17 20:32:13.928 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.928 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.928 -07 000000433 INF: FPGA: Recv ZSGSRD 30263
17-03-17 20:32:13.938 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.938 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.938 -07 000000462 INF: FPGA: Recv ZSGSRD 30271
17-03-17 20:32:13.948 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.948 -07 000000482 INF: FPGA: Recv ZSGSRD 30280
17-03-17 20:32:13.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.958 -07 000000462 INF: FPGA: Recv ZSGSRD 30278
17-03-17 20:32:13.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.968 -07 000000424 INF: FPGA: Recv ZSGSRD 30271
17-03-17 20:32:13.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:13.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30263
17-03-17 20:32:13.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.988 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:13.988 -07 000000458 INF: FPGA: Recv ZPIEZORD 26338
17-03-17 20:32:13.998 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -8.7 V.
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30271 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30270 (-134.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30263 (-133.9 uncal um), Max = 30280 (-134.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30271, posNoise = 9, negNoise = 8
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: After move to -0.134795, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: Settle wait time = 1711 ms, measure time = 102 ms (allowed 150 ms), total time = 1813 ms
17-03-17 20:32:13.998 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:32:14.048 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1865 ms
17-03-17 20:32:14.048 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:32:14.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:14.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:14.048 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:14.048 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:14.048 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:32:14.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:14.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:14.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:32:14.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:32:14.058 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:32:14.058 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:32:14.058 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:32:14.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:32:14.108 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:32:14.308 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:32:14.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:32:14.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:32:14.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 20:32:14.348 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:32:14.348 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:32:14.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:32:14.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:32:14.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:14.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:32:14.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:32:14.448 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:32:14.448 -07 000000459 INF: Autofocus start
17-03-17 20:32:14.448 -07 000000459 INF: MeasureProfile start
17-03-17 20:32:14.448 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:32:14.458 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:32:14.458 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:32:14.468 -07 000000459 INF: MeasureProfile done
17-03-17 20:32:14.468 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:32:14.468 -07 000000459 INF: Autofocus finished
17-03-17 20:32:14.658 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:32:14.658 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:32:14.658 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134790677754381. ----------
17-03-17 20:32:14.658 -07 000000610 INF: Cycle	39	Tile	19	Exposure Settings		A	415	G	200	T	200	C	415
17-03-17 20:32:14.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27941, sync = True, waitForSettling = True)
17-03-17 20:32:14.668 -07 000000610 INF: Z Motor: Moving to -0.127906 mm, started at -0.134791 mm, distance = 6.88 um
17-03-17 20:32:14.668 -07 000000610 INF: FPGA: Xmit ZDACW 27941\n [Z Motor]
17-03-17 20:32:14.668 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:32:14.678 -07 000000610 INF: FPGA: 'ZDACW 27941' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:32:14.678 -07 000000012 INF: FPGA: Recv ZDACR 27941
17-03-17 20:32:14.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:32:14.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.838 -07 000000626 INF: FPGA: Recv ZSGSRD 29206
17-03-17 20:32:14.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:14.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.848 -07 000000012 INF: FPGA: Recv ZSGSRD 29202
17-03-17 20:32:14.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29200
17-03-17 20:32:14.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.868 -07 000000626 INF: FPGA: Recv ZSGSRD 29197
17-03-17 20:32:14.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.878 -07 000000012 INF: FPGA: Recv ZSGSRD 29200
17-03-17 20:32:14.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29204
17-03-17 20:32:14.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29201
17-03-17 20:32:14.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.908 -07 000000569 INF: FPGA: Recv ZSGSRD 29202
17-03-17 20:32:14.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.918 -07 000000569 INF: FPGA: Recv ZSGSRD 29197
17-03-17 20:32:14.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:32:14.928 -07 000000569 INF: FPGA: Recv ZSGSRD 29198
17-03-17 20:32:14.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:32:14.938 -07 000000424 INF: FPGA: Recv ZPIEZORD 24937
17-03-17 20:32:14.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:14.948 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.4 V.
17-03-17 20:32:14.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29201 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29200 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29197 (-127.1 uncal um), Max = 29206 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:32:14.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29201, posNoise = 5, negNoise = 4
17-03-17 20:32:14.948 -07 000000610 INF: Z Motor: After move to -0.127906, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:32:14.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:32:14.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:32:14.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:32:14.948 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:32:14.948 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:32:14.948 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:32:14.948 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:32:14.948 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:32:14.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:32:14.948 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:32:14.948 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:32:14.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:32:14.948 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:32:14.958 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:32:14.958 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:32:14.958 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:32:14.958 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:32:14.968 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:32:14.968 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:32:14.968 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:32:14.968 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:32:14.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28118 150\n [Camera]
17-03-17 20:32:15.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:32:15.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-17 20:32:15.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-17 20:32:15.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:15.588 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-17 20:32:15.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-17 20:32:15.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:15.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:15.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:32:15.588 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:15.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:32:15.778 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28118 800
17-03-17 20:32:15.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-17 20:32:15.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 20:32:15.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 20:32:15.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:15.958 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:32:15.958 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:32:15.958 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:15.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:15.968 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:32:15.968 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:32:15.968 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:32:16.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-17 20:32:16.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-17 20:32:16.128 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:32:16.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-17 20:32:16.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-17 20:32:16.128 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:32:16.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:32:16.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:32:16.138 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:32:16.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:32:16.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-17 20:32:16.318 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:32:16.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28118 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-17 20:32:16.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:32:16.528 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:32:16.528 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:16.528 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:32:16.528 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:32:16.528 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:32:16.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:16.528 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:32:16.538 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:32:16.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:32:16.538 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:32:16.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:32:16.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:32:16.618 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:32:16.658 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 20:32:16.658 -07 000000610 INF: Imaging Cycle 39: ScanTilesCommand Cycle 39 time end. Duration was 149351 ms.
17-03-17 20:32:16.658 -07 000000610 INF: =================== Cycle #39 ===================
17-03-17 20:32:16.658 -07 000000610 INF: ===================  ===================
17-03-17 20:32:16.678 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:32:16.678 -07 000000424 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 20:32:16.688 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:32:16.688 -07 000000012 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 20:32:16.688 -07 000000012 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 39, FrontChillerTemperature: 3.989471, FrontChillerHeatSinkTemperature: 0.311751, AmbientTemperature: 18.98347, FlowCellCompartmentTemperature: 22.00126, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.80852, GreenLEDSensorTemperature: 25.3096, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 20:32:16.698 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.