17-03-17 20:32:16.748 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:16.748 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:32:16.748 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:32:16.748 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:16.748 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:32:16.758 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:32:16.758 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:16.758 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:32:16.758 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:32:16.758 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:32:16.788 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:32:16.868 -07 000000012 INF: FPGA: Recv YMVTO 154377 871
17-03-17 20:32:16.868 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 20:32:16.868 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 20:32:16.868 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:32:16.868 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 20:32:18.168 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.994908,
17-03-17 20:32:19.868 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:32:19.868 -07 000000012 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:32:19.878 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:32:19.878 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:32:19.898 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:32:19.898 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 20:32:19.898 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3143 ms
17-03-17 20:32:19.898 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 60° ===================
17-03-17 20:32:19.898 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:32:19.898 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:32:19.908 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:32:19.908 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:32:19.908 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:32:19.908 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 20:32:19.918 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:32:19.918 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 60° ===================
17-03-17 20:32:19.918 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:19.918 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:32:19.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:19.948 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:32:19.948 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:32:19.948 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:32:20.248 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:32:20.268 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:32:20.268 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:32:20.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:20.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:32:20.338 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:32:20.438 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:20.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:20.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:20.468 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:32:20.468 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:32:20.468 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:32:20.598 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:32:20.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:21.798 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=556, R2=576, Total=1132. Warn if over 250 bubbles per interval.
17-03-17 20:32:23.528 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.983999,
17-03-17 20:32:23.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:23.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:24.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:24.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:24.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:24.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:24.698 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:32:24.698 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:24.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:24.858 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:32:24.858 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:32:24.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:25.018 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:32:25.018 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:32:25.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:32:25.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:32:25.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:25.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:25.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:25.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:32:25.638 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:26.798 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 20:32:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=560, R2=579, Total=1139. Warn if over 250 bubbles per interval.
17-03-17 20:32:26.858 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:32:26.858 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:32:26.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:26.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:32:26.878 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:32:26.878 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:32:27.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:32:27.028 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:32:27.028 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:32:27.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:27.098 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:32:27.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:32:27.198 -07 000000610 INF: =================== Cycle #40, Pumping Reagent CMS (4) ===================
17-03-17 20:32:27.198 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:27.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:27.228 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:32:27.228 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:32:27.228 -07 000000610 INF: =================== Cycle #40, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:32:27.358 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:32:28.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:28.888 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.96762,
17-03-17 20:32:29.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:29.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:29.588 -07 000000610 INF: LanePump: Waited 1469 ms for pump motion to complete
17-03-17 20:32:29.588 -07 000000610 INF: =================== Cycle #40, Pumping Reagent CMS (4) ===================
17-03-17 20:32:29.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:29.748 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:32:29.748 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:32:29.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:29.908 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:32:29.908 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:32:29.908 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:32:30.038 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:32:30.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:30.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:30.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:30.528 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:32:30.528 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:31.748 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:32:31.748 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:32:31.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:31.768 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:32:31.768 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:32:31.768 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:32:31.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-17 20:32:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=565, R2=582, Total=1147. Warn if over 250 bubbles per interval.
17-03-17 20:32:31.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:32:31.938 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:32:31.938 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:32:31.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:32.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:32:32.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:32:32.108 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:32.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:32.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:32.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:32:32.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:32:32.138 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:32:32.268 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:32:32.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:33.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:33.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:33.208 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:32:33.208 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:33.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:33.368 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:32:33.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:32:33.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:33.528 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:32:33.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:32:33.528 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:32:33.658 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:32:33.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:34.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:34.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:34.148 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:32:34.148 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:34.148 -07 000000459 INF: WaitCommand(10000) start
17-03-17 20:32:34.148 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:32:34.148 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:32:34.248 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.028963,
17-03-17 20:32:35.368 -07 000000012 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:32:35.368 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 20:32:35.398 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:32:35.398 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:32:35.528 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:32:35.568 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:36.798 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 20:32:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=565, R2=584, Total=1149. Warn if over 250 bubbles per interval.
17-03-17 20:32:37.098 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:37.128 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:37.548 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:37.578 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:37.578 -07 000000012 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:32:37.578 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:32:37.578 -07 000000012 INF: ===================  ===================
17-03-17 20:32:39.608 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.004458,
17-03-17 20:32:41.788 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:41.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=565, R2=584, Total=1149. Warn if over 250 bubbles per interval.
17-03-17 20:32:44.158 -07 000000459 INF: WaitCommand(10000) end
17-03-17 20:32:44.158 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:44.158 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:44.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:44.188 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:32:44.188 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:32:44.188 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:32:44.318 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:32:44.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:44.968 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.023489,
17-03-17 20:32:46.788 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:32:46.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=565, R2=584, Total=1149. Warn if over 250 bubbles per interval.
17-03-17 20:32:50.328 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.000345,
17-03-17 20:32:50.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:50.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:50.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:50.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:51.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:51.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:51.788 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 9
17-03-17 20:32:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=9, R2=10, Total=19. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=574, R2=594, Total=1168. Warn if over 250 bubbles per interval.
17-03-17 20:32:51.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:51.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:52.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:52.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:52.318 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:32:52.318 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:52.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:52.478 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:32:52.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:32:52.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:52.638 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:32:52.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:32:52.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:32:52.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:32:52.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:53.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:53.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:53.258 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:32:53.258 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:54.478 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:32:54.478 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:32:54.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:54.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:32:54.498 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:32:54.498 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:32:54.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:32:54.728 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:32:54.728 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:32:54.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:54.798 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:32:54.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:32:54.898 -07 000000610 INF: =================== Cycle #40, Pumping Reagent IMT (1) ===================
17-03-17 20:32:54.898 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:54.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:54.928 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:32:54.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:32:54.928 -07 000000610 INF: =================== Cycle #40, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:32:55.058 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:32:55.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:55.688 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.988112,
17-03-17 20:32:56.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:56.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:32:56.788 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:32:56.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:32:56.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:57.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:57.018 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:32:57.018 -07 000000610 INF: =================== Cycle #40, Pumping Reagent IMT (1) ===================
17-03-17 20:32:57.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:57.178 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:32:57.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:32:57.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:57.338 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:32:57.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:32:57.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:32:57.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:32:57.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:57.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:32:57.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:32:57.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:32:57.958 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:32:59.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:32:59.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:32:59.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:59.198 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:32:59.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:32:59.198 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:32:59.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:32:59.448 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:32:59.448 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:32:59.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:32:59.518 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:32:59.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:32:59.618 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:32:59.618 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:32:59.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:32:59.658 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:32:59.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:32:59.658 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:32:59.788 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:32:59.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:33:00.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:01.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:01.248 -07 000000610 INF: LanePump: Waited 1420 ms for pump motion to complete
17-03-17 20:33:01.248 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:33:01.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:33:01.408 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:33:01.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:33:01.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:33:01.548 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.975845,
17-03-17 20:33:01.568 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:33:01.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:33:01.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:33:01.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:33:01.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:01.788 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:01.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:02.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:02.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:02.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:33:02.188 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:33:02.188 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 65° ===================
17-03-17 20:33:02.188 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:33:02.188 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:33:02.188 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:33:02.198 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:33:02.198 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:33:02.198 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 20:33:02.208 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:33:02.208 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 65° ===================
17-03-17 20:33:02.208 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:33:02.208 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:33:06.788 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:06.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:06.928 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.993549,
17-03-17 20:33:11.788 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:11.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:12.288 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.994908,
17-03-17 20:33:16.788 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:16.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:17.668 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.000345,
17-03-17 20:33:21.788 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:21.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:23.028 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.031682,
17-03-17 20:33:26.788 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:28.408 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.018051,
17-03-17 20:33:31.788 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:32.218 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:33:32.218 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:33:32.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:33:32.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:33:32.348 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:33:32.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:33:32.348 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:33:32.478 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:33:32.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:33:33.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:33.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:33.088 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:33:33.088 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:33:33.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:33:33.248 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:33:33.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:33:33.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:33:33.408 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:33:33.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:33:33.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:33:33.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:33:33.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:33.768 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.012614,
17-03-17 20:33:33.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:34.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:34.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:33:34.028 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:33:34.028 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:33:34.028 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:33:34.738 -07 000000476 INF: WaitCommand(30000) start
17-03-17 20:33:35.248 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:33:35.248 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-17 20:33:35.278 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:33:35.278 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:33:35.408 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:33:35.448 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:33:36.788 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:37.788 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:37.818 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:33:38.238 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 20:33:38.268 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:33:38.268 -07 000000569 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:33:38.268 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:33:38.268 -07 000000569 INF: ===================  ===================
17-03-17 20:33:39.148 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.015368,
17-03-17 20:33:41.798 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:44.508 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.005817,
17-03-17 20:33:46.798 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:46.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:50.848 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.99219,
17-03-17 20:33:51.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:33:56.208 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.020806,
17-03-17 20:33:56.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:33:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:34:01.568 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.019446,
17-03-17 20:34:01.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:34:04.748 -07 000000476 INF: WaitCommand(30000) end
17-03-17 20:34:04.748 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 22° ===================
17-03-17 20:34:04.748 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:34:04.748 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:34:04.748 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:34:04.758 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:04.758 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:34:04.758 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 20:34:04.768 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:04.768 -07 000000610 INF: =================== Cycle #40, Flow Cell Temp 22° ===================
17-03-17 20:34:04.768 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:34:04.768 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:34:04.768 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:34:04.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:04.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:34:04.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:34:04.808 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:34:04.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:34:04.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:07.308 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:07.308 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=575, R2=595, Total=1170. Warn if over 250 bubbles per interval.
17-03-17 20:34:07.618 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.004458,
17-03-17 20:34:08.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:08.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:08.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:08.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:09.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:09.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:09.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:34:09.038 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:34:09.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:09.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:34:09.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:34:09.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:09.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:34:09.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:34:09.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:34:09.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:34:09.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:09.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:09.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:09.978 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:34:09.978 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:34:11.198 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:34:11.198 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:34:11.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:11.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:34:11.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:34:11.218 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:34:11.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:34:11.388 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:34:11.388 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:34:11.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:11.458 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:34:11.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:34:11.558 -07 000000610 INF: =================== Cycle #40, Pumping Reagent USM (2) ===================
17-03-17 20:34:11.558 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:34:11.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:11.588 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:34:11.588 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:34:11.588 -07 000000610 INF: =================== Cycle #40, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:34:11.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:34:11.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:11.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 20:34:11.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=577, R2=596, Total=1173. Warn if over 250 bubbles per interval.
17-03-17 20:34:12.998 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.974486,
17-03-17 20:34:13.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:13.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:13.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:13.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:13.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:34:13.678 -07 000000610 INF: =================== Cycle #40, Pumping Reagent USM (2) ===================
17-03-17 20:34:13.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:13.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:34:13.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:34:13.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:13.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:34:13.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:34:13.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:34:14.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:34:14.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:14.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:14.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:14.618 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:34:14.618 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:34:15.838 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:34:15.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:34:15.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:15.858 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:34:15.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:34:15.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:34:16.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:34:16.028 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:34:16.028 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:34:16.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:16.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:34:16.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:34:16.198 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:34:16.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:34:16.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:16.228 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:34:16.228 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:34:16.228 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:34:16.358 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:34:16.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:16.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 20:34:16.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=577, R2=598, Total=1175. Warn if over 250 bubbles per interval.
17-03-17 20:34:17.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:17.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:17.298 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:34:17.298 -07 000000610 INF: =================== Cycle #40, Pumping Reagent PR2 (3) ===================
17-03-17 20:34:17.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:17.458 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:34:17.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:34:17.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:34:17.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:34:17.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:34:17.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:34:17.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:34:17.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:18.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:18.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:18.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:34:18.238 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:34:18.238 -07 000000448 INF: WaitCommand(10000) start
17-03-17 20:34:18.238 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:34:18.238 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:34:18.358 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.971733,
17-03-17 20:34:19.458 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:34:19.458 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-17 20:34:19.488 -07 000000569 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:34:19.488 -07 000000569 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:34:19.618 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:34:19.658 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:21.188 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:21.218 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:34:21.638 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 20:34:21.668 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:34:21.668 -07 000000569 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:34:21.668 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:34:21.668 -07 000000569 INF: ===================  ===================
17-03-17 20:34:21.798 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=577, R2=598, Total=1175. Warn if over 250 bubbles per interval.
17-03-17 20:34:23.738 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.015368,
17-03-17 20:34:26.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 20:34:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=598, Total=1176. Warn if over 250 bubbles per interval.
17-03-17 20:34:28.248 -07 000000448 INF: WaitCommand(10000) end
17-03-17 20:34:28.248 -07 000000610 INF: =================== Cycle #40, Imaging ===================
17-03-17 20:34:28.248 -07 000000610 INF: Imaging Cycle 40: ScanTilesCommand Cycle 40 time start.
17-03-17 20:34:28.248 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:34:28.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:28.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:34:28.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:34:28.278 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:34:28.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:34:28.598 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:34:28.598 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:34:28.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:34:28.668 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:34:28.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:28.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:28.668 -07 000000476 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:34:28.668 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:28.668 -07 000000476 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:34:28.678 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 20:34:28.678 -07 000000476 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:34:28.678 -07 000000476 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:34:28.678 -07 000000438 INF: FPGA: Recv EXLED1ADCR 23192
17-03-17 20:34:28.688 -07 000000476 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:28.688 -07 000000476 INF: RedLED: Using Red data: Photodiode ADC 23192 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW
17-03-17 20:34:28.688 -07 000000476 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:34:28.688 -07 000000482 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:34:28.698 -07 000000476 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:28.698 -07 000000476 INF: RedLED: LED was on for 19 ms
17-03-17 20:34:28.698 -07 000000476 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:34:28.698 -07 000000476 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:34:28.698 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:28.698 -07 000000476 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:34:28.698 -07 000000627 INF: FPGA: Recv EXLED2ON 
17-03-17 20:34:28.708 -07 000000476 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:28.708 -07 000000476 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:34:28.708 -07 000000012 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 20:34:28.718 -07 000000476 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:28.718 -07 000000476 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 20:34:28.718 -07 000000476 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:34:28.718 -07 000000482 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:34:28.728 -07 000000476 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:28.728 -07 000000476 INF: GreenLED: LED was on for 20 ms
17-03-17 20:34:28.728 -07 000000476 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:34:28.728 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:34:28.728 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 20:34:28.738 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:28.738 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:34:29.098 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.003063,
17-03-17 20:34:29.238 -07 000000569 INF: FPGA: Recv EMOUT
17-03-17 20:34:29.238 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:34:29.238 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:34:29.238 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 20:34:29.248 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:29.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:29.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127916770762697. ------
17-03-17 20:34:29.248 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:29.248 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17937 mm
17-03-17 20:34:29.248 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:29.248 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:29.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 39184, sync = True, waitForSettling = False)
17-03-17 20:34:29.248 -07 000000476 INF: Z Motor: Moving to -0.179373 mm, started at -0.127917 mm, distance = -51.46 um
17-03-17 20:34:29.248 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:34:29.258 -07 000000429 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:34:29.258 -07 000000476 INF: FPGA: Xmit ZDACW 39184\n [Z Motor]
17-03-17 20:34:29.258 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:29.258 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:34:29.268 -07 000000476 INF: FPGA: 'ZDACW 39184' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:29.268 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:29.278 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:29.278 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:34:29.288 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:29.288 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:34:29.288 -07 000000429 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:29.288 -07 000000429 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:34:29.288 -07 000000429 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:34:29.288 -07 000000551 INF: FPGA: Recv ZDACR 39184
17-03-17 20:34:29.298 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:34:29.298 -07 000000476 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:34:29.298 -07 000000429 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:34:29.468 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:29.468 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:34:30.978 -07 000000478 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:34:30.978 -07 000000429 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1693 ms overall
17-03-17 20:34:30.978 -07 000000429 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:34:30.978 -07 000000429 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:34:30.978 -07 000000429 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1693 ms, distance = 15.468 mm, average velocity = 9.137 mm/sec
17-03-17 20:34:31.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:34:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:33.828 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:33.828 -07 000000012 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:34:33.838 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.838 -07 000000429 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:33.858 -07 000000429 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:33.858 -07 000000429 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:34:33.858 -07 000000429 INF: Y Motor: Moved to 59.9111 after 4605 ms
17-03-17 20:34:33.858 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179373 mm (DAC = 39184)
17-03-17 20:34:33.858 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.868 -07 000000478 INF: FPGA: Recv ZSGSRD 37214
17-03-17 20:34:33.868 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:34:33.868 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.868 -07 000000012 INF: FPGA: Recv ZSGSRD 37216
17-03-17 20:34:33.878 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:33.878 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.878 -07 000000478 INF: FPGA: Recv ZSGSRD 37208
17-03-17 20:34:33.888 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.888 -07 000000626 INF: FPGA: Recv ZSGSRD 37212
17-03-17 20:34:33.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.898 -07 000000431 INF: FPGA: Recv ZSGSRD 37215
17-03-17 20:34:33.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.908 -07 000000476 INF: FPGA: Recv ZSGSRD 37210
17-03-17 20:34:33.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.918 -07 000000569 INF: FPGA: Recv ZSGSRD 37214
17-03-17 20:34:33.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.928 -07 000000431 INF: FPGA: Recv ZSGSRD 37210
17-03-17 20:34:33.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.938 -07 000000569 INF: FPGA: Recv ZSGSRD 37211
17-03-17 20:34:33.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:33.948 -07 000000482 INF: FPGA: Recv ZSGSRD 37216
17-03-17 20:34:33.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.958 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:33.958 -07 000000626 INF: FPGA: Recv ZPIEZORD 33707
17-03-17 20:34:33.968 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.979 V. Piezo Error = -7.8 V.
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37213 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37213 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37208 (-178.5 uncal um), Max = 37216 (-178.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37213, posNoise = 3, negNoise = 5
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: After move to -0.179373, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: Settle wait time = 4608 ms, measure time = 104 ms (allowed 150 ms), total time = 4712 ms
17-03-17 20:34:33.968 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:34.018 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 20:34:34.018 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:34.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:34.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:34.018 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:34.018 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:34.018 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:34.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:34.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:34.018 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:34:34.048 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:34:34.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:34.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:34:34.048 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:34.058 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:34:34.058 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:34:34.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:34.108 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:34.308 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:34.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:34.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:34.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468647168, 0x0, 559484976) start.
17-03-17 20:34:34.348 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:34.348 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:34.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:34:34.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468647168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:34:34.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:34.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:34:34.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:34:34.468 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.003063,
17-03-17 20:34:34.548 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:34.548 -07 000000478 INF: Image SNR check: start
17-03-17 20:34:34.548 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:34.558 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:34.558 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:34.558 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=66.17]
17-03-17 20:34:34.558 -07 000000478 INF: Autofocus start
17-03-17 20:34:34.558 -07 000000478 INF: MeasureProfile start
17-03-17 20:34:34.578 -07 000000478 INF: MeasureProfile done
17-03-17 20:34:34.578 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:34:34.578 -07 000000478 INF: Autofocus finished
17-03-17 20:34:34.758 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:34.758 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:34:34.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179387558442485. ----------
17-03-17 20:34:34.758 -07 000000610 INF: Cycle	40	Tile	1	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:34.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37717, sync = True, waitForSettling = True)
17-03-17 20:34:34.768 -07 000000610 INF: Z Motor: Moving to -0.172657 mm, started at -0.179388 mm, distance = 6.73 um
17-03-17 20:34:34.768 -07 000000610 INF: FPGA: Xmit ZDACW 37717\n [Z Motor]
17-03-17 20:34:34.768 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:34:34.778 -07 000000610 INF: FPGA: 'ZDACW 37717' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:34.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:34.778 -07 000000448 INF: FPGA: Recv ZDACR 37717
17-03-17 20:34:34.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.938 -07 000000431 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:34:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.948 -07 000000478 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:34:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.958 -07 000000431 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:34:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.968 -07 000000476 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:34:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.978 -07 000000476 INF: FPGA: Recv ZSGSRD 36172
17-03-17 20:34:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.988 -07 000000431 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:34:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:34.998 -07 000000476 INF: FPGA: Recv ZSGSRD 36163
17-03-17 20:34:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:35.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:34:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:35.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:35.018 -07 000000448 INF: FPGA: Recv ZSGSRD 36166
17-03-17 20:34:35.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:35.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:35.028 -07 000000626 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:34:35.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:35.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:35.038 -07 000000478 INF: FPGA: Recv ZPIEZORD 32306
17-03-17 20:34:35.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:35.048 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.755 V. Piezo Error = -8.5 V.
17-03-17 20:34:35.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36167 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36166 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36163 (-171.8 uncal um), Max = 36172 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:34:35.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36167, posNoise = 5, negNoise = 4
17-03-17 20:34:35.048 -07 000000610 INF: Z Motor: After move to -0.172657, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:35.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:34:35.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:35.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:35.048 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:35.048 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:35.048 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:35.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:35.048 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:35.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:35.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:34:35.048 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:35.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:34:35.048 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:34:35.058 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:35.058 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:35.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:34:35.068 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:34:35.078 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:34:35.078 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:35.078 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:34:35.078 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:35.098 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:34:35.098 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 45 ms.
17-03-17 20:34:35.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37894 150\n [Camera]
17-03-17 20:34:35.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:34:35.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:34:35.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:34:35.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:35.718 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:35.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:34:35.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:34:35.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:34:35.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:35.718 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:35.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 20:34:35.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37894 802
17-03-17 20:34:36.058 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:36.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:34:36.108 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:34:36.108 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:36.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:34:36.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:34:36.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:36.118 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:36.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:34:36.118 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:34:36.128 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:34:36.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:36.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:36.258 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:36.258 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:36.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:34:36.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:36.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:36.258 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:36.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:36.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:34:36.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:34:36.448 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:36.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37894 150' command took 2 ms to send, 1344 ms to get response, and 1351 ms overall
17-03-17 20:34:36.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:36.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172667832542204. ------
17-03-17 20:34:36.448 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:36.458 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17908 mm
17-03-17 20:34:36.458 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:36.458 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:36.458 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:34:36.458 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:34:36.458 -07 000000478 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:34:36.458 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:36.458 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39121, sync = True, waitForSettling = False)
17-03-17 20:34:36.458 -07 000000429 INF: Z Motor: Moving to -0.179084 mm, started at -0.172668 mm, distance = -6.42 um
17-03-17 20:34:36.468 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:36.468 -07 000000438 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:34:36.478 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:34:36.478 -07 000000429 INF: FPGA: Xmit ZDACW 39121\n [Z Motor]
17-03-17 20:34:36.478 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:36.478 -07 000000478 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:36.478 -07 000000478 INF: Y Motor: Moving 1330 steps2
17-03-17 20:34:36.478 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:34:36.488 -07 000000429 INF: FPGA: 'ZDACW 39121' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:34:36.488 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:36.488 -07 000000482 INF: FPGA: Recv ZDACR 39121
17-03-17 20:34:36.498 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:36.498 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:36.498 -07 000000429 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:34:36.658 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:36.658 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:34:36.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:34:36.658 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:34:36.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:36.668 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:34:36.668 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:34:36.668 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:36.668 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:34:36.668 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:34:36.668 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:34:36.678 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:34:36.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:36.868 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:34:36.868 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:34:36.898 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:36.908 -07 000000476 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:34:36.908 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:34:36.908 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:36.908 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:34:36.908 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 20:34:37.858 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:37.858 -07 000000429 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:34:37.868 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:37.868 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:37.888 -07 000000478 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:37.888 -07 000000478 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:34:37.888 -07 000000478 INF: Y Motor: Moved to 60.7329 after 1429 ms (table move)
17-03-17 20:34:37.888 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179084 mm (DAC = 39121)
17-03-17 20:34:37.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.888 -07 000000551 INF: FPGA: Recv ZSGSRD 37169
17-03-17 20:34:37.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:34:37.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.898 -07 000000551 INF: FPGA: Recv ZSGSRD 37164
17-03-17 20:34:37.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:37.908 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.908 -07 000000551 INF: FPGA: Recv ZSGSRD 37159
17-03-17 20:34:37.918 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.918 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.918 -07 000000551 INF: FPGA: Recv ZSGSRD 37166
17-03-17 20:34:37.928 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.928 -07 000000501 INF: FPGA: Recv ZSGSRD 37163
17-03-17 20:34:37.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.938 -07 000000501 INF: FPGA: Recv ZSGSRD 37163
17-03-17 20:34:37.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.948 -07 000000501 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:34:37.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.958 -07 000000501 INF: FPGA: Recv ZSGSRD 37172
17-03-17 20:34:37.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.968 -07 000000501 INF: FPGA: Recv ZSGSRD 37164
17-03-17 20:34:37.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:37.978 -07 000000501 INF: FPGA: Recv ZSGSRD 37164
17-03-17 20:34:37.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.988 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:37.988 -07 000000501 INF: FPGA: Recv ZPIEZORD 33636
17-03-17 20:34:37.998 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.969 V. Piezo Error = -7.8 V.
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37165 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37164 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37159 (-178.1 uncal um), Max = 37172 (-178.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37165, posNoise = 7, negNoise = 6
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: After move to -0.179084, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: Settle wait time = 1431 ms, measure time = 104 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:34:37.998 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:38.048 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:34:38.048 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:38.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:38.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:38.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:38.048 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:38.058 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:38.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:38.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:38.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:38.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:34:38.058 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:38.068 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:34:38.068 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:34:38.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:38.118 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:38.318 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:38.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:38.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:38.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096534176, 0x0, 559484976) start.
17-03-17 20:34:38.358 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:38.358 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:38.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:34:38.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096534176, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:34:38.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:38.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:34:38.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:34:38.458 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:38.458 -07 000000501 INF: Autofocus start
17-03-17 20:34:38.458 -07 000000501 INF: MeasureProfile start
17-03-17 20:34:38.468 -07 000000501 INF: MeasureProfile done
17-03-17 20:34:38.468 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:34:38.468 -07 000000501 INF: Autofocus finished
17-03-17 20:34:38.468 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:38.468 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 20:34:38.468 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:38.678 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:38.678 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 20:34:38.678 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179079196259681. ----------
17-03-17 20:34:38.678 -07 000000610 INF: Cycle	40	Tile	2	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:38.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37636, sync = True, waitForSettling = True)
17-03-17 20:34:38.688 -07 000000610 INF: Z Motor: Moving to -0.172287 mm, started at -0.179079 mm, distance = 6.79 um
17-03-17 20:34:38.688 -07 000000610 INF: FPGA: Xmit ZDACW 37636\n [Z Motor]
17-03-17 20:34:38.688 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:34:38.698 -07 000000610 INF: FPGA: 'ZDACW 37636' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:38.698 -07 000000569 INF: FPGA: Recv ZDACR 37636
17-03-17 20:34:38.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:38.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.858 -07 000000569 INF: FPGA: Recv ZSGSRD 36111
17-03-17 20:34:38.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:38.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.868 -07 000000569 INF: FPGA: Recv ZSGSRD 36111
17-03-17 20:34:38.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.878 -07 000000501 INF: FPGA: Recv ZSGSRD 36108
17-03-17 20:34:38.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.888 -07 000000569 INF: FPGA: Recv ZSGSRD 36111
17-03-17 20:34:38.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.898 -07 000000501 INF: FPGA: Recv ZSGSRD 36105
17-03-17 20:34:38.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36109
17-03-17 20:34:38.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.918 -07 000000012 INF: FPGA: Recv ZSGSRD 36112
17-03-17 20:34:38.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36110
17-03-17 20:34:38.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.938 -07 000000569 INF: FPGA: Recv ZSGSRD 36114
17-03-17 20:34:38.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:38.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36106
17-03-17 20:34:38.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:38.958 -07 000000501 INF: FPGA: Recv ZPIEZORD 32216
17-03-17 20:34:38.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:38.968 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.6 V.
17-03-17 20:34:38.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36110 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36110 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36114 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:34:38.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36110, posNoise = 4, negNoise = 5
17-03-17 20:34:38.968 -07 000000610 INF: Z Motor: After move to -0.172287, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:38.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:34:38.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:38.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:38.968 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:38.968 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:38.968 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:38.968 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:38.968 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:38.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:38.968 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:38.968 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:38.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:34:38.968 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:38.978 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:38.978 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:38.978 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:34:38.978 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:38.988 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:34:38.988 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:34:38.988 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:34:38.988 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:34:38.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37813 150\n [Camera]
17-03-17 20:34:39.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:34:39.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:34:39.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:34:39.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:39.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:39.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:34:39.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:34:39.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:34:39.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:39.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:39.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:34:39.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37813 802
17-03-17 20:34:39.838 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.000345,
17-03-17 20:34:39.948 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:40.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:34:40.018 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:34:40.018 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:40.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:34:40.018 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:34:40.018 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:40.018 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:40.018 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:34:40.018 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:40.028 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:34:40.158 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:40.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:40.158 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:40.158 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:40.158 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:34:40.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:40.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:40.158 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:40.158 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:40.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:34:40.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:34:40.348 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:40.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37813 150' command took 2 ms to send, 1342 ms to get response, and 1352 ms overall
17-03-17 20:34:40.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:40.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172301652450123. ------
17-03-17 20:34:40.348 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:40.348 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17890 mm
17-03-17 20:34:40.348 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:40.358 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:40.358 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:40.358 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:40.358 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:34:40.358 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:34:40.358 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 39080, sync = True, waitForSettling = False)
17-03-17 20:34:40.358 -07 000000415 INF: Z Motor: Moving to -0.178897 mm, started at -0.172302 mm, distance = -6.60 um
17-03-17 20:34:40.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:40.378 -07 000000415 INF: FPGA: Xmit ZDACW 39080\n [Z Motor]
17-03-17 20:34:40.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:34:40.558 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:34:40.558 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:40.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:34:40.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:34:40.558 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:40.568 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:40.568 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:34:40.568 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:34:40.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:34:41.238 -07 000000448 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:34:41.238 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:34:41.238 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 860 ms to get response, and 878 ms overall
17-03-17 20:34:41.238 -07 000000415 INF: FPGA: 'ZDACW 39080' command took 0 ms to send, 850 ms to get response, and 878 ms overall
17-03-17 20:34:41.238 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:41.238 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 871 ms to get response, and 879 ms overall
17-03-17 20:34:41.238 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:41.238 -07 000000626 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:41.238 -07 000000012 INF: FPGA: Recv ZDACR 39080
17-03-17 20:34:41.238 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:41.238 -07 000000626 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:34:41.248 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:41.248 -07 000000415 INF: Z Motor: MoveAbsStepped took 887 ms (did NOT wait for settling yet))
17-03-17 20:34:41.248 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:41.618 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:34:41.618 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 380 ms overall
17-03-17 20:34:41.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:41.658 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:34:41.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:34:41.668 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:41.668 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:34:41.668 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.840 mm, average velocity = 2.198 mm/sec
17-03-17 20:34:41.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:42.618 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:42.618 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:34:42.628 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:42.628 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:42.648 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:42.648 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:34:42.648 -07 000000626 INF: Y Motor: Moved to 61.5640 after 2290 ms (table move)
17-03-17 20:34:42.648 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178897 mm (DAC = 39080)
17-03-17 20:34:42.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.648 -07 000000012 INF: FPGA: Recv ZSGSRD 37138
17-03-17 20:34:42.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:34:42.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.658 -07 000000448 INF: FPGA: Recv ZSGSRD 37129
17-03-17 20:34:42.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.668 -07 000000448 INF: FPGA: Recv ZSGSRD 37138
17-03-17 20:34:42.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.678 -07 000000012 INF: FPGA: Recv ZSGSRD 37136
17-03-17 20:34:42.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.688 -07 000000012 INF: FPGA: Recv ZSGSRD 37139
17-03-17 20:34:42.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.698 -07 000000448 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:34:42.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.708 -07 000000448 INF: FPGA: Recv ZSGSRD 37135
17-03-17 20:34:42.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.718 -07 000000415 INF: FPGA: Recv ZSGSRD 37135
17-03-17 20:34:42.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.728 -07 000000415 INF: FPGA: Recv ZSGSRD 37139
17-03-17 20:34:42.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:42.738 -07 000000448 INF: FPGA: Recv ZSGSRD 37132
17-03-17 20:34:42.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.748 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:42.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 33564
17-03-17 20:34:42.758 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.963 V. Piezo Error = -7.9 V.
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37137 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37137 (-178.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37129 (-178.0 uncal um), Max = 37147 (-178.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37137, posNoise = 10, negNoise = 8
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: After move to -0.178897, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: Settle wait time = 2293 ms, measure time = 105 ms (allowed 150 ms), total time = 2398 ms
17-03-17 20:34:42.758 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:42.808 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2452 ms
17-03-17 20:34:42.808 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:42.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:42.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:42.808 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:42.808 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:42.808 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:42.808 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:42.808 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:34:42.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:42.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:34:42.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:42.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:34:42.818 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:34:42.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:42.868 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:43.068 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:43.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:43.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:43.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 20:34:43.108 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:43.108 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:43.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:34:43.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:34:43.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:43.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:34:43.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:34:43.208 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:43.208 -07 000000415 INF: Autofocus start
17-03-17 20:34:43.208 -07 000000415 INF: MeasureProfile start
17-03-17 20:34:43.208 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:43.218 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:43.218 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:43.218 -07 000000415 INF: MeasureProfile done
17-03-17 20:34:43.218 -07 000000415 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:34:43.218 -07 000000415 INF: Autofocus finished
17-03-17 20:34:43.418 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:43.418 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:34:43.418 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178899318319712. ----------
17-03-17 20:34:43.428 -07 000000610 INF: Cycle	40	Tile	3	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:43.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37542, sync = True, waitForSettling = True)
17-03-17 20:34:43.428 -07 000000610 INF: Z Motor: Moving to -0.171856 mm, started at -0.178899 mm, distance = 7.04 um
17-03-17 20:34:43.428 -07 000000610 INF: FPGA: Xmit ZDACW 37542\n [Z Motor]
17-03-17 20:34:43.428 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:34:43.438 -07 000000610 INF: FPGA: 'ZDACW 37542' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:43.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:43.438 -07 000000012 INF: FPGA: Recv ZDACR 37542
17-03-17 20:34:43.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.598 -07 000000501 INF: FPGA: Recv ZSGSRD 36043
17-03-17 20:34:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36044
17-03-17 20:34:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36043
17-03-17 20:34:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36040
17-03-17 20:34:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36042
17-03-17 20:34:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.648 -07 000000569 INF: FPGA: Recv ZSGSRD 36044
17-03-17 20:34:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.658 -07 000000012 INF: FPGA: Recv ZSGSRD 36040
17-03-17 20:34:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36045
17-03-17 20:34:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.678 -07 000000012 INF: FPGA: Recv ZSGSRD 36045
17-03-17 20:34:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:43.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36034
17-03-17 20:34:43.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:43.698 -07 000000551 INF: FPGA: Recv ZPIEZORD 32117
17-03-17 20:34:43.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:43.708 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -8.7 V.
17-03-17 20:34:43.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36042 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36043 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36034 (-170.9 uncal um), Max = 36045 (-171.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:34:43.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36042, posNoise = 3, negNoise = 8
17-03-17 20:34:43.708 -07 000000610 INF: Z Motor: After move to -0.171856, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:43.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:34:43.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:43.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:43.708 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:43.708 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:43.708 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:43.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:43.708 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:43.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:34:43.708 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:43.708 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:43.708 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:34:43.708 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:43.718 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:43.718 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:43.718 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:34:43.718 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:43.728 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:34:43.728 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:34:43.728 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:34:43.728 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:34:43.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37719 150\n [Camera]
17-03-17 20:34:43.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:34:44.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:34:44.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:34:44.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:44.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:44.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:34:44.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:34:44.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:34:44.348 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:44.348 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:44.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:34:44.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37719 802
17-03-17 20:34:44.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:44.738 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:34:44.738 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:34:44.738 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:44.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:44.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:34:44.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:34:44.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:44.748 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:44.748 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:34:44.748 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:34:44.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:44.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:44.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:44.888 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:44.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:34:44.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:44.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:44.888 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:44.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:44.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:34:45.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:34:45.078 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:45.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37719 150' command took 2 ms to send, 1346 ms to get response, and 1351 ms overall
17-03-17 20:34:45.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:45.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171864806024483. ------
17-03-17 20:34:45.088 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:45.088 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17765 mm
17-03-17 20:34:45.088 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:45.088 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:34:45.088 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:45.088 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:34:45.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38807, sync = True, waitForSettling = False)
17-03-17 20:34:45.088 -07 000000431 INF: Z Motor: Moving to -0.177647 mm, started at -0.171865 mm, distance = -5.78 um
17-03-17 20:34:45.098 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:45.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:45.098 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:34:45.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:34:45.108 -07 000000569 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:45.108 -07 000000431 INF: FPGA: Xmit ZDACW 38807\n [Z Motor]
17-03-17 20:34:45.108 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:34:45.108 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:45.108 -07 000000569 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:34:45.118 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:45.118 -07 000000431 INF: FPGA: 'ZDACW 38807' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:34:45.128 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:45.138 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:45.138 -07 000000448 INF: FPGA: Recv ZDACR 38807
17-03-17 20:34:45.148 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:34:45.148 -07 000000431 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:34:45.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:34:45.288 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:34:45.288 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:45.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:34:45.288 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:34:45.288 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:45.298 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:45.298 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:34:45.298 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:34:45.298 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:34:45.338 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:45.338 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 213 ms to get response, and 243 ms overall
17-03-17 20:34:45.338 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.014009,
17-03-17 20:34:45.508 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:34:45.508 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 20:34:45.538 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:45.538 -07 000000415 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:34:45.548 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:34:45.548 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:45.548 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:34:45.548 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 20:34:46.498 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:46.498 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:34:46.508 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:46.508 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:46.528 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:46.528 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:34:46.528 -07 000000569 INF: Y Motor: Moved to 62.3955 after 1437 ms (table move)
17-03-17 20:34:46.528 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177647 mm (DAC = 38807)
17-03-17 20:34:46.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.528 -07 000000569 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:34:46.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:34:46.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.538 -07 000000569 INF: FPGA: Recv ZSGSRD 36945
17-03-17 20:34:46.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.548 -07 000000415 INF: FPGA: Recv ZSGSRD 36939
17-03-17 20:34:46.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.558 -07 000000415 INF: FPGA: Recv ZSGSRD 36935
17-03-17 20:34:46.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36941
17-03-17 20:34:46.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.578 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:34:46.588 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.588 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36952
17-03-17 20:34:46.598 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.598 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36949
17-03-17 20:34:46.608 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36949
17-03-17 20:34:46.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:46.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36943
17-03-17 20:34:46.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.628 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:46.628 -07 000000501 INF: FPGA: Recv ZPIEZORD 33362
17-03-17 20:34:46.638 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -7.9 V.
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36945 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36947 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36935 (-176.7 uncal um), Max = 36952 (-176.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36945, posNoise = 7, negNoise = 10
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: After move to -0.177647, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:34:46.638 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:46.688 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:34:46.688 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:46.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:46.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:46.708 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:46.708 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:46.708 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:46.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:46.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:46.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:46.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:46.708 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:46.718 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:34:46.718 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:34:46.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:46.778 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:46.798 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:46.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:46.968 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:46.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:46.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:46.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 20:34:47.008 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:47.018 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:47.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:34:47.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:34:47.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:47.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:34:47.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:34:47.118 -07 000000415 INF: Autofocus start
17-03-17 20:34:47.118 -07 000000415 INF: MeasureProfile start
17-03-17 20:34:47.118 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:47.128 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:47.128 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 20:34:47.128 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:47.128 -07 000000415 INF: MeasureProfile done
17-03-17 20:34:47.128 -07 000000415 INF: X=80  Z correction [um]=0.337546
17-03-17 20:34:47.128 -07 000000415 INF: Autofocus finished
17-03-17 20:34:47.328 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:47.328 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 20:34:47.338 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177665869588493. ----------
17-03-17 20:34:47.338 -07 000000610 INF: Cycle	40	Tile	4	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:47.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37393, sync = True, waitForSettling = True)
17-03-17 20:34:47.338 -07 000000610 INF: Z Motor: Moving to -0.171174 mm, started at -0.177666 mm, distance = 6.49 um
17-03-17 20:34:47.338 -07 000000610 INF: FPGA: Xmit ZDACW 37393\n [Z Motor]
17-03-17 20:34:47.338 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:34:47.348 -07 000000610 INF: FPGA: 'ZDACW 37393' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:47.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:47.348 -07 000000438 INF: FPGA: Recv ZDACR 37393
17-03-17 20:34:47.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35942
17-03-17 20:34:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:47.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.518 -07 000000476 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:34:47.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.528 -07 000000438 INF: FPGA: Recv ZSGSRD 35930
17-03-17 20:34:47.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:47.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.538 -07 000000551 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:34:47.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.548 -07 000000438 INF: FPGA: Recv ZSGSRD 35933
17-03-17 20:34:47.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35933
17-03-17 20:34:47.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.568 -07 000000438 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:34:47.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35940
17-03-17 20:34:47.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35943
17-03-17 20:34:47.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:47.598 -07 000000482 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:34:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:47.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 31962
17-03-17 20:34:47.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:47.618 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.8 V.
17-03-17 20:34:47.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35936 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35933 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35930 (-170.3 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:34:47.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35936, posNoise = 7, negNoise = 6
17-03-17 20:34:47.618 -07 000000610 INF: Z Motor: After move to -0.171174, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:47.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:34:47.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:47.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:47.618 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:47.618 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:47.618 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:47.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:47.618 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:47.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:47.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:47.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:47.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:34:47.618 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:47.628 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:34:47.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:47.628 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:34:47.628 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:47.638 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:34:47.638 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:34:47.638 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:34:47.638 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:34:47.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37570 150\n [Camera]
17-03-17 20:34:47.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:34:48.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:34:48.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:34:48.258 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:48.258 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:48.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:34:48.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:34:48.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:34:48.258 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:48.258 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:48.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:34:48.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37570 802
17-03-17 20:34:48.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:48.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:34:48.658 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:34:48.658 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:48.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:34:48.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:34:48.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:48.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:34:48.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:34:48.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:34:48.668 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:34:48.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:48.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:48.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:48.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:48.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:48.938 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:48.948 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:48.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:34:48.948 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:48.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:34:48.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:34:48.988 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:48.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37570 150' command took 2 ms to send, 1339 ms to get response, and 1351 ms overall
17-03-17 20:34:48.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:48.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171183839537457. ------
17-03-17 20:34:48.998 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:48.998 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17762 mm
17-03-17 20:34:48.998 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:48.998 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:48.998 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:34:48.998 -07 000000627 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:34:48.998 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38800, sync = True, waitForSettling = False)
17-03-17 20:34:48.998 -07 000000476 INF: Z Motor: Moving to -0.177615 mm, started at -0.171184 mm, distance = -6.43 um
17-03-17 20:34:49.008 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:49.008 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:49.008 -07 000000501 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:34:49.018 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:49.018 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:49.018 -07 000000627 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:49.018 -07 000000627 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:49.018 -07 000000627 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:34:49.028 -07 000000476 INF: FPGA: Xmit ZDACW 38800\n [Z Motor]
17-03-17 20:34:49.028 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:34:49.038 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:49.038 -07 000000476 INF: FPGA: 'ZDACW 38800' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:34:49.048 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:49.048 -07 000000482 INF: FPGA: Recv ZDACR 38800
17-03-17 20:34:49.058 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:34:49.058 -07 000000476 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:34:49.218 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:49.218 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:34:49.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:34:49.338 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:34:49.338 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:49.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:34:49.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:34:49.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:49.348 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:34:49.348 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-17 20:34:49.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:49.348 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:34:49.408 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:34:49.408 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:34:49.448 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:49.448 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:34:49.458 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:34:49.458 -07 000000627 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:49.458 -07 000000627 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:34:49.458 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.135 mm/sec
17-03-17 20:34:50.408 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:50.408 -07 000000415 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:34:50.418 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:50.418 -07 000000627 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:50.438 -07 000000627 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:50.438 -07 000000627 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:34:50.438 -07 000000627 INF: Y Motor: Moved to 63.2241 after 1434 ms (table move)
17-03-17 20:34:50.438 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177615 mm (DAC = 38800)
17-03-17 20:34:50.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.448 -07 000000415 INF: FPGA: Recv ZSGSRD 36941
17-03-17 20:34:50.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:34:50.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36940
17-03-17 20:34:50.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.458 -07 000000627 INF: FPGA: Recv ZSGSRD 36935
17-03-17 20:34:50.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.468 -07 000000627 INF: FPGA: Recv ZSGSRD 36940
17-03-17 20:34:50.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.478 -07 000000415 INF: FPGA: Recv ZSGSRD 36942
17-03-17 20:34:50.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36946
17-03-17 20:34:50.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.498 -07 000000415 INF: FPGA: Recv ZSGSRD 36943
17-03-17 20:34:50.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.508 -07 000000627 INF: FPGA: Recv ZSGSRD 36936
17-03-17 20:34:50.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.518 -07 000000627 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:34:50.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:50.528 -07 000000627 INF: FPGA: Recv ZSGSRD 36934
17-03-17 20:34:50.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.538 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:50.538 -07 000000415 INF: FPGA: Recv ZPIEZORD 33342
17-03-17 20:34:50.548 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.0 V.
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36939 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36940 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36932 (-176.7 uncal um), Max = 36946 (-176.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36939, posNoise = 7, negNoise = 7
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: After move to -0.177615, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:34:50.548 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:50.598 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:34:50.598 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:50.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:50.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:50.598 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:50.598 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:50.598 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:50.598 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:50.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:50.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:50.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:34:50.608 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:50.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:34:50.618 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:34:50.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:50.658 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:50.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.990831,
17-03-17 20:34:50.858 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:50.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:50.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:50.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:34:50.898 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:50.898 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:50.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:34:50.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:34:50.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:50.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:34:50.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:34:50.998 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:50.998 -07 000000415 INF: Autofocus start
17-03-17 20:34:50.998 -07 000000415 INF: MeasureProfile start
17-03-17 20:34:50.998 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:51.008 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:51.008 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:51.018 -07 000000415 INF: MeasureProfile done
17-03-17 20:34:51.018 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:34:51.018 -07 000000415 INF: Autofocus finished
17-03-17 20:34:51.208 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:51.208 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:34:51.208 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177627324315643. ----------
17-03-17 20:34:51.218 -07 000000610 INF: Cycle	40	Tile	5	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:51.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37333, sync = True, waitForSettling = True)
17-03-17 20:34:51.218 -07 000000610 INF: Z Motor: Moving to -0.170900 mm, started at -0.177627 mm, distance = 6.73 um
17-03-17 20:34:51.218 -07 000000610 INF: FPGA: Xmit ZDACW 37333\n [Z Motor]
17-03-17 20:34:51.218 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:34:51.228 -07 000000610 INF: FPGA: 'ZDACW 37333' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:51.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:51.228 -07 000000448 INF: FPGA: Recv ZDACR 37333
17-03-17 20:34:51.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:51.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.388 -07 000000501 INF: FPGA: Recv ZSGSRD 35897
17-03-17 20:34:51.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:51.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.398 -07 000000476 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:34:51.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35889
17-03-17 20:34:51.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.418 -07 000000415 INF: FPGA: Recv ZSGSRD 35901
17-03-17 20:34:51.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.428 -07 000000448 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:34:51.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:34:51.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.448 -07 000000415 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:34:51.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.458 -07 000000476 INF: FPGA: Recv ZSGSRD 35890
17-03-17 20:34:51.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35898
17-03-17 20:34:51.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:51.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35889
17-03-17 20:34:51.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:51.488 -07 000000415 INF: FPGA: Recv ZPIEZORD 31937
17-03-17 20:34:51.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:51.498 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.7 V.
17-03-17 20:34:51.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35894 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35893 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35901 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:34:51.498 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35894, posNoise = 7, negNoise = 5
17-03-17 20:34:51.498 -07 000000610 INF: Z Motor: After move to -0.170900, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:51.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:34:51.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:51.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:51.498 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:51.498 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:51.498 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:51.498 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:51.498 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:51.498 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:51.498 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:34:51.498 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:51.498 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:51.498 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:51.498 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:51.508 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:51.508 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:34:51.508 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:51.508 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:34:51.508 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:34:51.518 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:34:51.518 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:34:51.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37510 150\n [Camera]
17-03-17 20:34:51.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:34:51.798 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:52.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:34:52.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:34:52.138 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:52.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:34:52.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:34:52.138 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:52.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:52.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) start.
17-03-17 20:34:52.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:52.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:34:52.328 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37510 806
17-03-17 20:34:52.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:52.638 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:34:52.638 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:34:52.638 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:52.638 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:52.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:34:52.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:34:52.648 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:52.648 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 20:34:52.648 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:52.648 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:34:52.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:52.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:52.678 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:52.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:52.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:52.678 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:52.678 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:52.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:34:52.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:52.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:34:52.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:34:52.868 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:52.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37510 150' command took 2 ms to send, 1343 ms to get response, and 1351 ms overall
17-03-17 20:34:52.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:52.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170914022627503. ------
17-03-17 20:34:52.868 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:52.868 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17736 mm
17-03-17 20:34:52.868 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:52.878 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:52.878 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:34:52.878 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:52.878 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38744, sync = True, waitForSettling = False)
17-03-17 20:34:52.878 -07 000000476 INF: Z Motor: Moving to -0.177359 mm, started at -0.170914 mm, distance = -6.44 um
17-03-17 20:34:52.878 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:34:52.878 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:34:52.888 -07 000000476 INF: FPGA: Xmit ZDACW 38744\n [Z Motor]
17-03-17 20:34:52.898 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:53.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:34:53.078 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:34:53.078 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:53.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:34:53.088 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:34:53.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:53.088 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:53.088 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:34:53.088 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:53.098 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:34:53.738 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:34:53.738 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:34:53.738 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:53.738 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 830 ms to get response, and 855 ms overall
17-03-17 20:34:53.738 -07 000000448 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:53.738 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 850 ms to get response, and 858 ms overall
17-03-17 20:34:53.738 -07 000000476 INF: FPGA: 'ZDACW 38744' command took 0 ms to send, 840 ms to get response, and 856 ms overall
17-03-17 20:34:53.738 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:53.738 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:53.738 -07 000000448 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:34:53.738 -07 000000482 INF: FPGA: Recv ZDACR 38744
17-03-17 20:34:53.748 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:53.748 -07 000000476 INF: Z Motor: MoveAbsStepped took 865 ms (did NOT wait for settling yet))
17-03-17 20:34:53.748 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:54.118 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:34:54.118 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:34:54.158 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:54.158 -07 000000627 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:34:54.168 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:54.168 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:54.168 -07 000000448 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 20:34:54.168 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.184 mm/sec
17-03-17 20:34:55.118 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:55.118 -07 000000478 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:34:55.128 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:55.128 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:55.148 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:55.148 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:34:55.148 -07 000000448 INF: Y Motor: Moved to 64.0571 after 2266 ms (table move)
17-03-17 20:34:55.148 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177359 mm (DAC = 38744)
17-03-17 20:34:55.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36901
17-03-17 20:34:55.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:34:55.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.158 -07 000000431 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:34:55.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36902
17-03-17 20:34:55.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36906
17-03-17 20:34:55.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.188 -07 000000626 INF: FPGA: Recv ZSGSRD 36899
17-03-17 20:34:55.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36899
17-03-17 20:34:55.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.208 -07 000000482 INF: FPGA: Recv ZSGSRD 36896
17-03-17 20:34:55.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36892
17-03-17 20:34:55.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.228 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.228 -07 000000482 INF: FPGA: Recv ZSGSRD 36898
17-03-17 20:34:55.238 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:55.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36896
17-03-17 20:34:55.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:55.248 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:55.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 33302
17-03-17 20:34:55.258 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -8.0 V.
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36898 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36892 (-176.4 uncal um), Max = 36906 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36898, posNoise = 8, negNoise = 6
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: After move to -0.177359, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: Settle wait time = 2270 ms, measure time = 106 ms (allowed 150 ms), total time = 2376 ms
17-03-17 20:34:55.258 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:55.308 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2431 ms
17-03-17 20:34:55.308 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:55.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:55.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:55.308 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:55.308 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:55.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:55.308 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:55.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:34:55.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:55.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:34:55.318 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:55.318 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:34:55.318 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:34:55.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:55.378 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:55.578 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:55.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:55.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:55.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441599192, 0x0, 559484976) start.
17-03-17 20:34:55.608 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:55.618 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:55.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 20:34:55.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441599192, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:34:55.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:55.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:34:55.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:34:55.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:55.718 -07 000000476 INF: Autofocus start
17-03-17 20:34:55.718 -07 000000476 INF: MeasureProfile start
17-03-17 20:34:55.718 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:55.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:55.728 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:55.728 -07 000000476 INF: MeasureProfile done
17-03-17 20:34:55.728 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:34:55.728 -07 000000476 INF: Autofocus finished
17-03-17 20:34:55.928 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:55.928 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:34:55.928 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177363931617831. ----------
17-03-17 20:34:55.928 -07 000000610 INF: Cycle	40	Tile	6	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:55.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37259, sync = True, waitForSettling = True)
17-03-17 20:34:55.938 -07 000000610 INF: Z Motor: Moving to -0.170561 mm, started at -0.177364 mm, distance = 6.80 um
17-03-17 20:34:55.938 -07 000000610 INF: FPGA: Xmit ZDACW 37259\n [Z Motor]
17-03-17 20:34:55.938 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:34:55.948 -07 000000610 INF: FPGA: 'ZDACW 37259' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:55.948 -07 000000482 INF: FPGA: Recv ZDACR 37259
17-03-17 20:34:55.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:55.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:56.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.005817,
17-03-17 20:34:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:34:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35842
17-03-17 20:34:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:34:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35834
17-03-17 20:34:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35847
17-03-17 20:34:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:34:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35839
17-03-17 20:34:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35844
17-03-17 20:34:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.188 -07 000000448 INF: FPGA: Recv ZSGSRD 35839
17-03-17 20:34:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:56.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:34:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:56.208 -07 000000448 INF: FPGA: Recv ZPIEZORD 31868
17-03-17 20:34:56.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:56.218 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -8.8 V.
17-03-17 20:34:56.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35833 (-169.6 uncal um), Max = 35847 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:34:56.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 7, negNoise = 7
17-03-17 20:34:56.218 -07 000000610 INF: Z Motor: After move to -0.170561, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:56.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:34:56.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:56.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:56.218 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:56.218 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:56.218 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:34:56.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:34:56.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:34:56.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:34:56.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:34:56.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:56.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:56.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:34:56.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:34:56.228 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:34:56.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:34:56.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:34:56.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:34:56.238 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:34:56.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:34:56.238 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:34:56.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37436 150\n [Camera]
17-03-17 20:34:56.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:34:56.798 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:34:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:34:56.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:34:56.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:34:56.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:56.858 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:56.858 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:34:56.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:34:56.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:34:56.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:56.858 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:56.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:34:57.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37436 802
17-03-17 20:34:57.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:34:57.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:34:57.258 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:34:57.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:57.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:34:57.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:34:57.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:57.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:57.258 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:34:57.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:34:57.268 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:34:57.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:34:57.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:34:57.398 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:34:57.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:34:57.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:34:57.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:34:57.398 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:34:57.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:34:57.398 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:34:57.398 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:34:57.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:34:57.588 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:34:57.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37436 150' command took 2 ms to send, 1346 ms to get response, and 1352 ms overall
17-03-17 20:34:57.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:34:57.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170567115171848. ------
17-03-17 20:34:57.598 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:57.598 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17712 mm
17-03-17 20:34:57.598 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:34:57.598 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:34:57.598 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:34:57.598 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:57.598 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-17 20:34:57.598 -07 000000569 INF: Z Motor: Moving to -0.177116 mm, started at -0.170567 mm, distance = -6.55 um
17-03-17 20:34:57.608 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:57.608 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:57.608 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:34:57.618 -07 000000569 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-17 20:34:57.618 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:34:57.618 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:57.618 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:34:57.618 -07 000000501 INF: Y Motor: Moving 1337 steps-12
17-03-17 20:34:57.618 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:34:57.628 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:34:57.628 -07 000000569 INF: FPGA: 'ZDACW 38691' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:34:57.638 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:34:57.648 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:57.648 -07 000000415 INF: FPGA: Recv ZDACR 38691
17-03-17 20:34:57.658 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:34:57.658 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:34:57.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:34:57.808 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:34:57.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:57.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:34:57.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:34:57.808 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:57.808 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:34:57.808 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:34:57.808 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:34:57.818 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:34:57.828 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:34:57.828 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:34:58.008 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:34:58.008 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:34:58.048 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:58.048 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:34:58.058 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:58.058 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:58.058 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:34:58.058 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:34:59.008 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:34:59.008 -07 000000415 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:34:59.018 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.018 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:34:59.038 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:34:59.038 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:34:59.038 -07 000000501 INF: Y Motor: Moved to 64.8789 after 1437 ms (table move)
17-03-17 20:34:59.038 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-17 20:34:59.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.048 -07 000000569 INF: FPGA: Recv ZSGSRD 36872
17-03-17 20:34:59.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:34:59.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.048 -07 000000012 INF: FPGA: Recv ZSGSRD 36861
17-03-17 20:34:59.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:34:59.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.058 -07 000000458 INF: FPGA: Recv ZSGSRD 36862
17-03-17 20:34:59.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.068 -07 000000626 INF: FPGA: Recv ZSGSRD 36853
17-03-17 20:34:59.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36861
17-03-17 20:34:59.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.088 -07 000000012 INF: FPGA: Recv ZSGSRD 36867
17-03-17 20:34:59.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.098 -07 000000551 INF: FPGA: Recv ZSGSRD 36860
17-03-17 20:34:59.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.108 -07 000000429 INF: FPGA: Recv ZSGSRD 36858
17-03-17 20:34:59.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.118 -07 000000478 INF: FPGA: Recv ZSGSRD 36855
17-03-17 20:34:59.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36863
17-03-17 20:34:59.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.138 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:34:59.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 33256
17-03-17 20:34:59.148 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.0 V.
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36861 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36861 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36853 (-176.2 uncal um), Max = 36872 (-176.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36861, posNoise = 11, negNoise = 8
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: After move to -0.177116, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:34:59.148 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:34:59.198 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:34:59.198 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:34:59.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:34:59.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:34:59.198 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:34:59.198 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:34:59.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:34:59.198 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:34:59.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:34:59.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:34:59.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:34:59.208 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:34:59.208 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:34:59.208 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:34:59.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:34:59.258 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:34:59.458 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:34:59.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:34:59.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:34:59.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460680576, 0x0, 559484976) start.
17-03-17 20:34:59.498 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:34:59.498 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:34:59.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:34:59.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460680576, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:34:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:34:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:34:59.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:34:59.598 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:34:59.598 -07 000000415 INF: Autofocus start
17-03-17 20:34:59.598 -07 000000415 INF: MeasureProfile start
17-03-17 20:34:59.598 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:34:59.608 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:34:59.608 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:34:59.608 -07 000000415 INF: MeasureProfile done
17-03-17 20:34:59.608 -07 000000415 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:34:59.608 -07 000000415 INF: Autofocus finished
17-03-17 20:34:59.808 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:34:59.808 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:34:59.808 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.177126235768586. ----------
17-03-17 20:34:59.808 -07 000000610 INF: Cycle	40	Tile	7	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:34:59.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37171, sync = True, waitForSettling = True)
17-03-17 20:34:59.818 -07 000000610 INF: Z Motor: Moving to -0.170158 mm, started at -0.177126 mm, distance = 6.97 um
17-03-17 20:34:59.818 -07 000000610 INF: FPGA: Xmit ZDACW 37171\n [Z Motor]
17-03-17 20:34:59.818 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:34:59.828 -07 000000610 INF: FPGA: 'ZDACW 37171' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:34:59.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:34:59.828 -07 000000569 INF: FPGA: Recv ZDACR 37171
17-03-17 20:34:59.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:34:59.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:34:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35777
17-03-17 20:34:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:34:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:34:59.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:35:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35781
17-03-17 20:35:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35777
17-03-17 20:35:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.028 -07 000000551 INF: FPGA: Recv ZSGSRD 35776
17-03-17 20:35:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.038 -07 000000501 INF: FPGA: Recv ZSGSRD 35783
17-03-17 20:35:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:35:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.058 -07 000000448 INF: FPGA: Recv ZSGSRD 35781
17-03-17 20:35:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.068 -07 000000415 INF: FPGA: Recv ZSGSRD 35779
17-03-17 20:35:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:00.078 -07 000000501 INF: FPGA: Recv ZSGSRD 35776
17-03-17 20:35:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:00.088 -07 000000551 INF: FPGA: Recv ZPIEZORD 31808
17-03-17 20:35:00.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:00.098 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -8.8 V.
17-03-17 20:35:00.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35778 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35777 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35775 (-169.3 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:35:00.098 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35778, posNoise = 5, negNoise = 3
17-03-17 20:35:00.098 -07 000000610 INF: Z Motor: After move to -0.170158, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:00.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:35:00.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:00.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:00.098 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:00.098 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:00.108 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:00.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:00.108 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:00.108 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:00.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:35:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:00.108 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:00.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:00.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:00.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:00.108 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:00.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:35:00.118 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:00.118 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:00.118 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:00.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37347 150\n [Camera]
17-03-17 20:35:00.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:00.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:00.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:00.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:00.738 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:00.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:35:00.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:00.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:00.748 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:00.748 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:00.748 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:35:00.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37347 805
17-03-17 20:35:01.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:01.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:35:01.138 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:35:01.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:01.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:01.138 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:35:01.138 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:35:01.138 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:35:01.138 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:01.148 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:01.148 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:35:01.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:01.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:01.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:01.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:01.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:01.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:01.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:35:01.288 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:01.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:01.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:35:01.418 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.005817,
17-03-17 20:35:01.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:35:01.478 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:01.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37347 150' command took 2 ms to send, 1351 ms to get response, and 1354 ms overall
17-03-17 20:35:01.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:01.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170168814019058. ------
17-03-17 20:35:01.598 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:01.598 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17661 mm
17-03-17 20:35:01.598 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:01.608 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:01.608 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:01.608 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38581, sync = True, waitForSettling = False)
17-03-17 20:35:01.608 -07 000000438 INF: Z Motor: Moving to -0.176612 mm, started at -0.170169 mm, distance = -6.44 um
17-03-17 20:35:01.608 -07 000000438 INF: FPGA: Xmit ZDACW 38581\n [Z Motor]
17-03-17 20:35:01.608 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:35:01.608 -07 000000431 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:35:01.608 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:35:01.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:01.618 -07 000000438 INF: FPGA: 'ZDACW 38581' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:01.618 -07 000000576 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:35:01.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:35:01.628 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:01.628 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:01.628 -07 000000431 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:01.628 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:35:01.638 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:01.638 -07 000000476 INF: FPGA: Recv ZDACR 38581
17-03-17 20:35:01.648 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:01.648 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:01.648 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:35:01.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:35:01.678 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:35:01.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:01.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:35:01.688 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:35:01.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:01.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:01.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:01.688 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:35:01.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:35:01.798 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:01.828 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:01.828 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 20:35:02.018 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:35:02.018 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:35:02.058 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:02.058 -07 000000415 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:35:02.068 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:02.068 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:02.068 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:35:02.068 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 20:35:03.018 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:03.018 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:35:03.028 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:03.028 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:03.048 -07 000000431 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:03.048 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:03.048 -07 000000431 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 20:35:03.048 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176612 mm (DAC = 38581)
17-03-17 20:35:03.048 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36787
17-03-17 20:35:03.058 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:35:03.058 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.058 -07 000000431 INF: FPGA: Recv ZSGSRD 36780
17-03-17 20:35:03.068 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:03.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.068 -07 000000551 INF: FPGA: Recv ZSGSRD 36782
17-03-17 20:35:03.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36784
17-03-17 20:35:03.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.088 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.088 -07 000000551 INF: FPGA: Recv ZSGSRD 36780
17-03-17 20:35:03.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.098 -07 000000551 INF: FPGA: Recv ZSGSRD 36790
17-03-17 20:35:03.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.108 -07 000000431 INF: FPGA: Recv ZSGSRD 36781
17-03-17 20:35:03.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36771
17-03-17 20:35:03.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.128 -07 000000551 INF: FPGA: Recv ZSGSRD 36789
17-03-17 20:35:03.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:03.138 -07 000000012 INF: FPGA: Recv ZSGSRD 36777
17-03-17 20:35:03.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.148 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:03.148 -07 000000551 INF: FPGA: Recv ZPIEZORD 33149
17-03-17 20:35:03.158 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.1 V.
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36782 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36782 (-175.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36771 (-175.7 uncal um), Max = 36790 (-175.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36782, posNoise = 8, negNoise = 11
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: After move to -0.176612, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: Settle wait time = 1448 ms, measure time = 101 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:35:03.158 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:03.208 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:35:03.208 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:03.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:03.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:03.208 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:03.208 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:03.208 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:03.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:03.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:03.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:03.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:03.218 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:03.228 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:35:03.228 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:35:03.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:03.278 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:03.478 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:03.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:03.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:03.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:35:03.518 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:03.518 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:03.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 20:35:03.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:35:03.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:03.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:03.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:35:03.618 -07 000000551 INF: Autofocus start
17-03-17 20:35:03.618 -07 000000551 INF: MeasureProfile start
17-03-17 20:35:03.618 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:03.618 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:03.628 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:03.628 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:03.638 -07 000000551 INF: MeasureProfile done
17-03-17 20:35:03.638 -07 000000551 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:35:03.638 -07 000000551 INF: Autofocus finished
17-03-17 20:35:03.828 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:03.828 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:35:03.838 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176618723009386. ----------
17-03-17 20:35:03.838 -07 000000610 INF: Cycle	40	Tile	8	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:03.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37149, sync = True, waitForSettling = True)
17-03-17 20:35:03.838 -07 000000610 INF: Z Motor: Moving to -0.170057 mm, started at -0.176619 mm, distance = 6.56 um
17-03-17 20:35:03.838 -07 000000610 INF: FPGA: Xmit ZDACW 37149\n [Z Motor]
17-03-17 20:35:03.838 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:35:03.848 -07 000000610 INF: FPGA: 'ZDACW 37149' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:03.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:03.848 -07 000000012 INF: FPGA: Recv ZDACR 37149
17-03-17 20:35:03.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:03.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:04.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.008 -07 000000501 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:35:04.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:04.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.018 -07 000000501 INF: FPGA: Recv ZSGSRD 35763
17-03-17 20:35:04.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35760
17-03-17 20:35:04.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:35:04.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35759
17-03-17 20:35:04.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.058 -07 000000551 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:35:04.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.068 -07 000000551 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:35:04.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.078 -07 000000551 INF: FPGA: Recv ZSGSRD 35760
17-03-17 20:35:04.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35762
17-03-17 20:35:04.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:04.098 -07 000000551 INF: FPGA: Recv ZSGSRD 35766
17-03-17 20:35:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:04.108 -07 000000551 INF: FPGA: Recv ZPIEZORD 31781
17-03-17 20:35:04.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:04.118 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -8.8 V.
17-03-17 20:35:04.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35762 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35762 (-169.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35759 (-169.2 uncal um), Max = 35766 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:35:04.118 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35762, posNoise = 4, negNoise = 3
17-03-17 20:35:04.118 -07 000000610 INF: Z Motor: After move to -0.170057, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:04.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:35:04.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:04.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:04.118 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:04.118 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:04.118 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:04.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:04.118 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:04.118 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:04.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:04.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:04.118 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:04.118 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:04.128 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:04.128 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:04.128 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:04.128 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:04.138 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:04.138 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:04.138 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:35:04.138 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:35:04.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37326 150\n [Camera]
17-03-17 20:35:04.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:04.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:04.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:04.758 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:04.758 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:04.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:04.758 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:04.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:35:04.758 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:04.768 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:04.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:35:04.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37326 802
17-03-17 20:35:05.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:05.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:35:05.138 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:35:05.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:05.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:35:05.138 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 20:35:05.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:05.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:05.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:35:05.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:05.148 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:35:05.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:05.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:05.298 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:05.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:05.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:05.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:05.418 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:05.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:35:05.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:05.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:35:05.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:05.488 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:05.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37326 150' command took 2 ms to send, 1345 ms to get response, and 1352 ms overall
17-03-17 20:35:05.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:05.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.17006602662479. ------
17-03-17 20:35:05.498 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:05.498 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17647 mm
17-03-17 20:35:05.498 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:05.498 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:35:05.498 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:35:05.498 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38549, sync = True, waitForSettling = False)
17-03-17 20:35:05.498 -07 000000431 INF: Z Motor: Moving to -0.176466 mm, started at -0.170066 mm, distance = -6.40 um
17-03-17 20:35:05.508 -07 000000431 INF: FPGA: Xmit ZDACW 38549\n [Z Motor]
17-03-17 20:35:05.518 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:05.798 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:35:05.798 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:35:05.798 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:05.798 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:05.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:35:05.798 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:35:05.798 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:05.808 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:05.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 20:35:05.808 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 20:35:05.818 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:05.818 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:35:05.818 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:35:05.818 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 299 ms to get response, and 325 ms overall
17-03-17 20:35:05.818 -07 000000551 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:05.818 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:05.828 -07 000000551 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:35:05.828 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 319 ms to get response, and 329 ms overall
17-03-17 20:35:05.828 -07 000000431 INF: FPGA: 'ZDACW 38549' command took 0 ms to send, 309 ms to get response, and 324 ms overall
17-03-17 20:35:05.828 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:05.838 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:05.838 -07 000000569 INF: FPGA: Recv ZDACR 38549
17-03-17 20:35:05.848 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:05.848 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:05.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 346 ms (did NOT wait for settling yet))
17-03-17 20:35:06.048 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:06.048 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:35:06.208 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:35:06.208 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-17 20:35:06.238 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:06.248 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:35:06.248 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:35:06.248 -07 000000551 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:06.248 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:35:06.248 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.838 mm, average velocity = 2.200 mm/sec
17-03-17 20:35:06.778 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.015368,
17-03-17 20:35:06.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:07.198 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:07.198 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:35:07.208 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:07.208 -07 000000551 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:07.228 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:07.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:07.228 -07 000000551 INF: Y Motor: Moved to 66.5391 after 1730 ms (table move)
17-03-17 20:35:07.228 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176466 mm (DAC = 38549)
17-03-17 20:35:07.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36755
17-03-17 20:35:07.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:35:07.238 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.238 -07 000000569 INF: FPGA: Recv ZSGSRD 36758
17-03-17 20:35:07.248 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:07.248 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36752
17-03-17 20:35:07.258 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.258 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.258 -07 000000569 INF: FPGA: Recv ZSGSRD 36755
17-03-17 20:35:07.268 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.268 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.268 -07 000000627 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:35:07.278 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.278 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36760
17-03-17 20:35:07.288 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.288 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36763
17-03-17 20:35:07.298 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.298 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36762
17-03-17 20:35:07.308 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.308 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36763
17-03-17 20:35:07.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.318 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:07.318 -07 000000627 INF: FPGA: Recv ZSGSRD 36751
17-03-17 20:35:07.328 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.328 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:07.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 33093
17-03-17 20:35:07.338 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.1 V.
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36758 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36758 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36751 (-175.5 uncal um), Max = 36763 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36758, posNoise = 5, negNoise = 7
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: After move to -0.176466, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: Settle wait time = 1733 ms, measure time = 103 ms (allowed 150 ms), total time = 1836 ms
17-03-17 20:35:07.338 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:07.388 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1889 ms
17-03-17 20:35:07.388 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:07.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:07.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:07.388 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:07.388 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:07.388 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:07.388 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:07.388 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:07.388 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:07.398 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:07.398 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:07.408 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:35:07.408 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:35:07.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:07.458 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:07.658 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:07.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:07.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:07.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) start.
17-03-17 20:35:07.698 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:07.698 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:07.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:35:07.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:35:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:07.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:35:07.798 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:07.798 -07 000000551 INF: Autofocus start
17-03-17 20:35:07.798 -07 000000551 INF: MeasureProfile start
17-03-17 20:35:07.798 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:07.808 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:07.808 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:07.808 -07 000000551 INF: MeasureProfile done
17-03-17 20:35:07.808 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:35:07.808 -07 000000551 INF: Autofocus finished
17-03-17 20:35:08.008 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:08.008 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:08.008 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176464541917984. ----------
17-03-17 20:35:08.008 -07 000000610 INF: Cycle	40	Tile	9	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:08.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37064, sync = True, waitForSettling = True)
17-03-17 20:35:08.018 -07 000000610 INF: Z Motor: Moving to -0.169668 mm, started at -0.176465 mm, distance = 6.80 um
17-03-17 20:35:08.018 -07 000000610 INF: FPGA: Xmit ZDACW 37064\n [Z Motor]
17-03-17 20:35:08.018 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:35:08.028 -07 000000610 INF: FPGA: 'ZDACW 37064' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:08.028 -07 000000576 INF: FPGA: Recv ZDACR 37064
17-03-17 20:35:08.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35707
17-03-17 20:35:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35694
17-03-17 20:35:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35698
17-03-17 20:35:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35702
17-03-17 20:35:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35709
17-03-17 20:35:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35704
17-03-17 20:35:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35696
17-03-17 20:35:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35703
17-03-17 20:35:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35701
17-03-17 20:35:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:08.278 -07 000000627 INF: FPGA: Recv ZSGSRD 35701
17-03-17 20:35:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:08.288 -07 000000626 INF: FPGA: Recv ZPIEZORD 31717
17-03-17 20:35:08.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:08.298 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -8.8 V.
17-03-17 20:35:08.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35702 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35694 (-168.8 uncal um), Max = 35709 (-168.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:08.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35702, posNoise = 7, negNoise = 8
17-03-17 20:35:08.298 -07 000000610 INF: Z Motor: After move to -0.169668, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:08.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:35:08.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:08.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:08.298 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:08.298 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:08.298 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:08.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:08.298 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:08.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:08.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:08.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:08.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:35:08.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:08.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:35:08.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:08.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:08.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:08.308 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:08.308 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:08.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:08.318 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:35:08.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37241 150\n [Camera]
17-03-17 20:35:08.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:08.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:08.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:08.938 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:08.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:08.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:08.948 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:08.948 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:08.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:35:08.948 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:08.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:35:09.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37241 805
17-03-17 20:35:09.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:09.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:35:09.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:35:09.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:35:09.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:35:09.318 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:09.318 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:09.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:09.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:35:09.328 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:09.338 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:35:09.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:09.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:09.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:09.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:09.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:09.488 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:09.488 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:09.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:35:09.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:09.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:35:09.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:09.678 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:09.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37241 150' command took 2 ms to send, 1343 ms to get response, and 1353 ms overall
17-03-17 20:35:09.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:09.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169680573896285. ------
17-03-17 20:35:09.678 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:09.688 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17650 mm
17-03-17 20:35:09.688 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:09.688 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:09.688 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:35:09.688 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:35:09.698 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:09.698 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:09.708 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:09.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:35:09.888 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:35:09.888 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:09.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:35:09.888 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:35:09.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:09.898 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:09.898 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:35:09.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:09.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:35:09.908 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38557, sync = True, waitForSettling = False)
17-03-17 20:35:09.908 -07 000000438 INF: Z Motor: Moving to -0.176503 mm, started at -0.169681 mm, distance = -6.82 um
17-03-17 20:35:09.908 -07 000000438 INF: FPGA: Xmit ZDACW 38557\n [Z Motor]
17-03-17 20:35:09.908 -07 000000012 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:35:09.908 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:09.908 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:35:09.908 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 224 ms overall
17-03-17 20:35:09.908 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:09.908 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 218 ms overall
17-03-17 20:35:09.918 -07 000000438 INF: FPGA: 'ZDACW 38557' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:09.918 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:09.918 -07 000000569 INF: FPGA: Recv ZDACR 38557
17-03-17 20:35:09.918 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:09.918 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:35:09.928 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:09.928 -07 000000438 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 20:35:09.928 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:10.298 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:35:10.298 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:35:10.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:10.338 -07 000000012 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:35:10.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:10.348 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:10.348 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:35:10.348 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 20:35:11.298 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:11.298 -07 000000012 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:35:11.308 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.308 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:11.328 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:11.328 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:11.328 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1639 ms (table move)
17-03-17 20:35:11.328 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176503 mm (DAC = 38557)
17-03-17 20:35:11.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36765
17-03-17 20:35:11.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 20:35:11.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.338 -07 000000012 INF: FPGA: Recv ZSGSRD 36766
17-03-17 20:35:11.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:11.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.348 -07 000000569 INF: FPGA: Recv ZSGSRD 36766
17-03-17 20:35:11.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36765
17-03-17 20:35:11.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36766
17-03-17 20:35:11.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.388 -07 000000012 INF: FPGA: Recv ZSGSRD 36770
17-03-17 20:35:11.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:11.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36757
17-03-17 20:35:11.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.408 -07 000000012 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:35:11.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.418 -07 000000012 INF: FPGA: Recv ZSGSRD 36768
17-03-17 20:35:11.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:11.428 -07 000000569 INF: FPGA: Recv ZSGSRD 36764
17-03-17 20:35:11.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.438 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:11.438 -07 000000438 INF: FPGA: Recv ZPIEZORD 33142
17-03-17 20:35:11.448 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.0 V.
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36765 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36766 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36757 (-175.6 uncal um), Max = 36770 (-175.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36765, posNoise = 5, negNoise = 8
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: After move to -0.176503, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: Settle wait time = 1424 ms, measure time = 114 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:35:11.448 -07 000000627 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:11.488 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1799 ms
17-03-17 20:35:11.488 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:11.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:11.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:11.488 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:11.488 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:11.488 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:11.488 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:11.498 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:11.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:11.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:11.498 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:11.508 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:35:11.508 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:35:11.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:11.548 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:11.748 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:11.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:11.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:11.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:35:11.788 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:11.798 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:11.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 20:35:11.798 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:11.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:35:11.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:11.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:11.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:35:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:11.898 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:11.898 -07 000000576 INF: Autofocus start
17-03-17 20:35:11.898 -07 000000576 INF: MeasureProfile start
17-03-17 20:35:11.898 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:11.908 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:11.908 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:11.908 -07 000000576 INF: MeasureProfile done
17-03-17 20:35:11.908 -07 000000576 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:35:11.908 -07 000000576 INF: Autofocus finished
17-03-17 20:35:12.108 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:12.108 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:12.108 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176509511402977. ----------
17-03-17 20:35:12.118 -07 000000610 INF: Cycle	40	Tile	10	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:12.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37018, sync = True, waitForSettling = True)
17-03-17 20:35:12.118 -07 000000610 INF: Z Motor: Moving to -0.169458 mm, started at -0.176510 mm, distance = 7.05 um
17-03-17 20:35:12.118 -07 000000610 INF: FPGA: Xmit ZDACW 37018\n [Z Motor]
17-03-17 20:35:12.118 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:35:12.128 -07 000000610 INF: FPGA: 'ZDACW 37018' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:12.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:12.138 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.989471,
17-03-17 20:35:12.138 -07 000000627 INF: FPGA: Recv ZDACR 37018
17-03-17 20:35:12.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:12.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.298 -07 000000576 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:35:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:35:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:35:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.328 -07 000000448 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:35:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.338 -07 000000429 INF: FPGA: Recv ZSGSRD 35672
17-03-17 20:35:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.348 -07 000000448 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:35:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:35:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.368 -07 000000478 INF: FPGA: Recv ZSGSRD 35668
17-03-17 20:35:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:35:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:12.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:35:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:12.398 -07 000000438 INF: FPGA: Recv ZPIEZORD 31663
17-03-17 20:35:12.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:12.408 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -8.8 V.
17-03-17 20:35:12.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35671 (-168.6 uncal um), Error = 0.8 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35676 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:35:12.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35671, posNoise = 5, negNoise = 3
17-03-17 20:35:12.408 -07 000000610 INF: Z Motor: After move to -0.169458, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:12.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 20:35:12.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:12.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:12.408 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:12.408 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:12.408 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:12.408 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:12.408 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:12.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:12.408 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:35:12.408 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:12.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:12.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:12.408 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:12.408 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:12.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:35:12.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:12.418 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:12.418 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:12.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:35:12.418 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:12.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37195 150\n [Camera]
17-03-17 20:35:12.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:13.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:13.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:13.048 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:13.048 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:13.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:35:13.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:13.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:13.048 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:13.048 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:13.048 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:35:13.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37195 804
17-03-17 20:35:13.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:13.438 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:35:13.438 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:35:13.438 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:13.448 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:13.448 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:35:13.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:35:13.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:35:13.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:13.448 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:13.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:35:13.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:13.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:13.588 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:13.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:13.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:13.698 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:13.698 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:13.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:35:13.708 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:13.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:13.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:13.778 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:13.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37195 150' command took 2 ms to send, 1345 ms to get response, and 1352 ms overall
17-03-17 20:35:13.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:13.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.16948142331989. ------
17-03-17 20:35:13.788 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:13.788 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17590 mm
17-03-17 20:35:13.788 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:14.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:35:14.108 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:35:14.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:14.108 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:35:14.108 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:35:14.108 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:14.108 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:14.108 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:14.108 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:35:14.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:35:14.118 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:35:14.118 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:35:14.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:14.128 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:14.128 -07 000000576 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:35:14.128 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 340 ms overall
17-03-17 20:35:14.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:35:14.128 -07 000000478 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:14.128 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:14.128 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38426, sync = True, waitForSettling = False)
17-03-17 20:35:14.128 -07 000000576 INF: Z Motor: Moving to -0.175903 mm, started at -0.169481 mm, distance = -6.42 um
17-03-17 20:35:14.128 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:14.128 -07 000000478 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:35:14.138 -07 000000576 INF: FPGA: Xmit ZDACW 38426\n [Z Motor]
17-03-17 20:35:14.148 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:14.738 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:35:14.738 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:14.738 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:35:14.738 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 600 ms to get response, and 607 ms overall
17-03-17 20:35:14.738 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 580 ms to get response, and 603 ms overall
17-03-17 20:35:14.738 -07 000000576 INF: FPGA: 'ZDACW 38426' command took 0 ms to send, 590 ms to get response, and 606 ms overall
17-03-17 20:35:14.738 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:14.738 -07 000000501 INF: FPGA: Recv ZDACR 38426
17-03-17 20:35:14.748 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:35:14.748 -07 000000576 INF: Z Motor: MoveAbsStepped took 616 ms (did NOT wait for settling yet))
17-03-17 20:35:14.768 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:14.778 -07 000000576 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:35:14.778 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:35:14.778 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:14.778 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:35:14.778 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 604 ms, distance = 0.841 mm, average velocity = 1.392 mm/sec
17-03-17 20:35:15.728 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:15.728 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:35:15.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.738 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:15.758 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:15.758 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:35:15.758 -07 000000478 INF: Y Motor: Moved to 68.2056 after 1632 ms (table move)
17-03-17 20:35:15.758 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175903 mm (DAC = 38426)
17-03-17 20:35:15.758 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.758 -07 000000576 INF: FPGA: Recv ZSGSRD 36669
17-03-17 20:35:15.768 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:15.768 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.768 -07 000000501 INF: FPGA: Recv ZSGSRD 36663
17-03-17 20:35:15.778 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.778 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36663
17-03-17 20:35:15.788 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.788 -07 000000501 INF: FPGA: Recv ZSGSRD 36676
17-03-17 20:35:15.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36674
17-03-17 20:35:15.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.808 -07 000000476 INF: FPGA: Recv ZSGSRD 36671
17-03-17 20:35:15.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.818 -07 000000476 INF: FPGA: Recv ZSGSRD 36668
17-03-17 20:35:15.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36674
17-03-17 20:35:15.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36671
17-03-17 20:35:15.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:15.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36666
17-03-17 20:35:15.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.858 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:15.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 33013
17-03-17 20:35:15.868 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.1 V.
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36670 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36663 (-175.0 uncal um), Max = 36676 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36670, posNoise = 6, negNoise = 7
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: After move to -0.175903, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: Settle wait time = 1630 ms, measure time = 106 ms (allowed 150 ms), total time = 1736 ms
17-03-17 20:35:15.868 -07 000000627 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:15.918 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2127 ms
17-03-17 20:35:15.918 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:15.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:15.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:15.918 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:15.918 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:15.918 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:15.918 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:15.918 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:35:15.918 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:15.928 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:15.928 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:15.928 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:35:15.928 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:35:15.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:15.978 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:16.178 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:16.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:16.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:16.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:35:16.218 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:16.218 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:16.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:35:16.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:35:16.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:16.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:16.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:35:16.318 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:16.318 -07 000000482 INF: Autofocus start
17-03-17 20:35:16.318 -07 000000482 INF: MeasureProfile start
17-03-17 20:35:16.318 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:16.328 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:16.328 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:16.328 -07 000000482 INF: MeasureProfile done
17-03-17 20:35:16.328 -07 000000482 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 20:35:16.328 -07 000000482 INF: Autofocus finished
17-03-17 20:35:16.528 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:16.528 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:16.528 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175899211249509. ----------
17-03-17 20:35:16.528 -07 000000610 INF: Cycle	40	Tile	11	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:16.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36868, sync = True, waitForSettling = True)
17-03-17 20:35:16.538 -07 000000610 INF: Z Motor: Moving to -0.168771 mm, started at -0.175899 mm, distance = 7.13 um
17-03-17 20:35:16.538 -07 000000610 INF: FPGA: Xmit ZDACW 36868\n [Z Motor]
17-03-17 20:35:16.538 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:35:16.548 -07 000000610 INF: FPGA: 'ZDACW 36868' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:16.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:16.548 -07 000000551 INF: FPGA: Recv ZDACR 36868
17-03-17 20:35:16.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.708 -07 000000476 INF: FPGA: Recv ZSGSRD 35564
17-03-17 20:35:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35563
17-03-17 20:35:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.728 -07 000000551 INF: FPGA: Recv ZSGSRD 35564
17-03-17 20:35:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.748 -07 000000476 INF: FPGA: Recv ZSGSRD 35565
17-03-17 20:35:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.758 -07 000000476 INF: FPGA: Recv ZSGSRD 35566
17-03-17 20:35:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35559
17-03-17 20:35:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.778 -07 000000431 INF: FPGA: Recv ZSGSRD 35562
17-03-17 20:35:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.788 -07 000000476 INF: FPGA: Recv ZSGSRD 35562
17-03-17 20:35:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.798 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:16.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:16.798 -07 000000501 INF: FPGA: Recv ZSGSRD 35567
17-03-17 20:35:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:16.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35561
17-03-17 20:35:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:16.818 -07 000000626 INF: FPGA: Recv ZPIEZORD 31534
17-03-17 20:35:16.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:16.828 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -8.9 V.
17-03-17 20:35:16.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35563 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35559 (-167.9 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:35:16.828 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35563, posNoise = 4, negNoise = 4
17-03-17 20:35:16.828 -07 000000610 INF: Z Motor: After move to -0.168771, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:16.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 20:35:16.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:16.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:16.828 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:16.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:16.828 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:16.828 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:16.828 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:16.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:16.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:35:16.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:16.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:16.828 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:16.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:16.838 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:16.838 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:16.838 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:16.848 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 20:35:16.848 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:35:16.848 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 20:35:16.848 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:35:16.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37045 150\n [Camera]
17-03-17 20:35:17.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:17.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:17.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:17.478 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:17.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:17.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:17.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:17.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:17.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:35:17.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:17.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 20:35:17.508 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.977204,
17-03-17 20:35:17.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37045 802
17-03-17 20:35:17.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:17.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:35:17.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:35:17.858 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:35:17.858 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:17.858 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:35:17.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:17.868 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:17.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:17.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:35:17.868 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:35:18.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:18.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:18.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:18.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:18.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:18.118 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:18.128 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:18.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:35:18.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:18.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:35:18.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:18.208 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:18.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37045 150' command took 2 ms to send, 1344 ms to get response, and 1351 ms overall
17-03-17 20:35:18.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:18.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.16878760840858. ------
17-03-17 20:35:18.208 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:18.208 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17532 mm
17-03-17 20:35:18.208 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:18.218 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:35:18.218 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:35:18.218 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:18.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:35:18.528 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:35:18.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:18.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:35:18.528 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:35:18.528 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:18.538 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:18.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:18.538 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:35:18.548 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:35:18.548 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38299, sync = True, waitForSettling = False)
17-03-17 20:35:18.548 -07 000000627 INF: Z Motor: Moving to -0.175322 mm, started at -0.168788 mm, distance = -6.53 um
17-03-17 20:35:18.548 -07 000000627 INF: FPGA: Xmit ZDACW 38299\n [Z Motor]
17-03-17 20:35:18.548 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:18.548 -07 000000569 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:35:18.548 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 329 ms to get response, and 336 ms overall
17-03-17 20:35:18.548 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:18.548 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:18.548 -07 000000501 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:35:18.548 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:35:18.558 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 339 ms overall
17-03-17 20:35:18.558 -07 000000627 INF: FPGA: 'ZDACW 38299' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:35:18.558 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:18.568 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:18.568 -07 000000569 INF: FPGA: Recv ZDACR 38299
17-03-17 20:35:18.578 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:18.578 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:18.578 -07 000000627 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:35:18.778 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:18.778 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:35:18.928 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:35:18.928 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 379 ms overall
17-03-17 20:35:18.968 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:18.968 -07 000000482 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:35:18.978 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:18.978 -07 000000501 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:18.978 -07 000000501 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:35:18.978 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.837 mm, average velocity = 2.209 mm/sec
17-03-17 20:35:19.928 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:19.928 -07 000000482 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:35:19.938 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:19.938 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:19.958 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:19.958 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:35:19.958 -07 000000501 INF: Y Motor: Moved to 69.0273 after 1741 ms (table move)
17-03-17 20:35:19.958 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175322 mm (DAC = 38299)
17-03-17 20:35:19.958 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:19.958 -07 000000501 INF: FPGA: Recv ZSGSRD 36578
17-03-17 20:35:19.968 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:19.968 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:19.968 -07 000000482 INF: FPGA: Recv ZSGSRD 36587
17-03-17 20:35:19.978 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:19.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:19.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36590
17-03-17 20:35:19.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:19.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:19.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36583
17-03-17 20:35:19.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:19.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:19.998 -07 000000501 INF: FPGA: Recv ZSGSRD 36580
17-03-17 20:35:20.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.008 -07 000000501 INF: FPGA: Recv ZSGSRD 36581
17-03-17 20:35:20.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.018 -07 000000482 INF: FPGA: Recv ZSGSRD 36579
17-03-17 20:35:20.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.028 -07 000000627 INF: FPGA: Recv ZSGSRD 36578
17-03-17 20:35:20.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.038 -07 000000501 INF: FPGA: Recv ZSGSRD 36573
17-03-17 20:35:20.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.048 -07 000000627 INF: FPGA: Recv ZSGSRD 36585
17-03-17 20:35:20.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.058 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:20.058 -07 000000482 INF: FPGA: Recv ZPIEZORD 32922
17-03-17 20:35:20.068 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.1 V.
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36581 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36580 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36573 (-174.4 uncal um), Max = 36590 (-174.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36581, posNoise = 9, negNoise = 8
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: After move to -0.175322, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: Settle wait time = 1409 ms, measure time = 104 ms (allowed 150 ms), total time = 1513 ms
17-03-17 20:35:20.068 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:20.118 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1900 ms
17-03-17 20:35:20.118 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:20.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:20.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:20.118 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:20.118 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:20.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:20.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:20.118 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:20.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:20.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:20.128 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:20.128 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:35:20.128 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:35:20.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:20.178 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:20.378 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:20.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:20.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:20.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109003936, 0x0, 559484976) start.
17-03-17 20:35:20.418 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:20.418 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:20.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:35:20.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109003936, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:35:20.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:20.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:35:20.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:35:20.518 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:20.518 -07 000000482 INF: Autofocus start
17-03-17 20:35:20.518 -07 000000482 INF: MeasureProfile start
17-03-17 20:35:20.518 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:20.528 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:20.528 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:20.528 -07 000000482 INF: MeasureProfile done
17-03-17 20:35:20.528 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:35:20.528 -07 000000482 INF: Autofocus finished
17-03-17 20:35:20.728 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:20.728 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:20.728 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175327456368892. ----------
17-03-17 20:35:20.728 -07 000000610 INF: Cycle	40	Tile	12	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:20.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36832, sync = True, waitForSettling = True)
17-03-17 20:35:20.738 -07 000000610 INF: Z Motor: Moving to -0.168606 mm, started at -0.175327 mm, distance = 6.72 um
17-03-17 20:35:20.738 -07 000000610 INF: FPGA: Xmit ZDACW 36832\n [Z Motor]
17-03-17 20:35:20.738 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:35:20.748 -07 000000610 INF: FPGA: 'ZDACW 36832' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:20.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:20.748 -07 000000482 INF: FPGA: Recv ZDACR 36832
17-03-17 20:35:20.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:20.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35530
17-03-17 20:35:20.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:20.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.918 -07 000000569 INF: FPGA: Recv ZSGSRD 35540
17-03-17 20:35:20.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35541
17-03-17 20:35:20.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35529
17-03-17 20:35:20.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.948 -07 000000501 INF: FPGA: Recv ZSGSRD 35537
17-03-17 20:35:20.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35538
17-03-17 20:35:20.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35540
17-03-17 20:35:20.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35531
17-03-17 20:35:20.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.988 -07 000000501 INF: FPGA: Recv ZSGSRD 35535
17-03-17 20:35:20.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:20.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:20.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35541
17-03-17 20:35:21.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:21.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:21.008 -07 000000626 INF: FPGA: Recv ZPIEZORD 31467
17-03-17 20:35:21.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:21.018 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.0 V.
17-03-17 20:35:21.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35536 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35541 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:21.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35536, posNoise = 5, negNoise = 7
17-03-17 20:35:21.018 -07 000000610 INF: Z Motor: After move to -0.168606, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:21.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:35:21.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:21.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:21.018 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:21.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:21.018 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:21.018 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:21.018 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:21.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:21.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:21.018 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:21.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:35:21.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:21.028 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:21.028 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:21.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:21.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:21.028 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:21.028 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:21.038 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:21.038 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:35:21.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 37008 150\n [Camera]
17-03-17 20:35:21.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:35:21.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:21.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:21.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:21.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:21.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:21.658 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:21.658 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:21.658 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:35:21.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:21.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:35:21.798 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:21.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37008 802
17-03-17 20:35:21.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:22.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:35:22.048 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:35:22.048 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:22.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:35:22.048 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:35:22.048 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:22.048 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:22.048 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:35:22.058 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:22.058 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:35:22.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:22.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:22.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:22.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:22.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:22.308 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:22.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:22.308 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:22.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:22.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:22.388 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:22.388 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:22.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 37008 150' command took 2 ms to send, 1346 ms to get response, and 1351 ms overall
17-03-17 20:35:22.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:22.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168614154680752. ------
17-03-17 20:35:22.398 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17498 mm
17-03-17 20:35:22.398 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:22.398 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:22.398 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:35:22.398 -07 000000438 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:35:22.398 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38224, sync = True, waitForSettling = False)
17-03-17 20:35:22.398 -07 000000429 INF: Z Motor: Moving to -0.174978 mm, started at -0.168614 mm, distance = -6.36 um
17-03-17 20:35:22.398 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:22.408 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:22.418 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:22.418 -07 000000458 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:35:22.428 -07 000000429 INF: FPGA: Xmit ZDACW 38224\n [Z Motor]
17-03-17 20:35:22.428 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:35:22.428 -07 000000438 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:22.428 -07 000000438 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:22.428 -07 000000438 INF: Y Motor: Moving 1352 steps-32
17-03-17 20:35:22.428 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:35:22.438 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:22.438 -07 000000429 INF: FPGA: 'ZDACW 38224' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 20:35:22.458 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:22.468 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:22.468 -07 000000569 INF: FPGA: Recv ZDACR 38224
17-03-17 20:35:22.478 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:35:22.478 -07 000000429 INF: Z Motor: MoveAbsStepped took 74 ms (did NOT wait for settling yet))
17-03-17 20:35:22.638 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:22.638 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 235 ms overall
17-03-17 20:35:22.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:35:22.708 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:35:22.708 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:22.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:35:22.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:35:22.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:22.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:22.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:22.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 20:35:22.718 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:35:22.838 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:35:22.838 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 407 ms overall
17-03-17 20:35:22.868 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.008536,
17-03-17 20:35:22.888 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:22.888 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:35:22.898 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:35:22.898 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:22.898 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:35:22.898 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.845 mm, average velocity = 2.077 mm/sec
17-03-17 20:35:23.848 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:23.848 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:35:23.858 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:23.858 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:23.878 -07 000000438 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:23.878 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:23.878 -07 000000438 INF: Y Motor: Moved to 69.8633 after 1478 ms (table move)
17-03-17 20:35:23.878 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174978 mm (DAC = 38224)
17-03-17 20:35:23.878 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.878 -07 000000501 INF: FPGA: Recv ZSGSRD 36528
17-03-17 20:35:23.888 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:23.888 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.888 -07 000000569 INF: FPGA: Recv ZSGSRD 36535
17-03-17 20:35:23.898 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.898 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.898 -07 000000433 INF: FPGA: Recv ZSGSRD 36534
17-03-17 20:35:23.908 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.908 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.908 -07 000000438 INF: FPGA: Recv ZSGSRD 36527
17-03-17 20:35:23.918 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.918 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.918 -07 000000569 INF: FPGA: Recv ZSGSRD 36524
17-03-17 20:35:23.928 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.928 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.928 -07 000000569 INF: FPGA: Recv ZSGSRD 36523
17-03-17 20:35:23.938 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.938 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.938 -07 000000433 INF: FPGA: Recv ZSGSRD 36530
17-03-17 20:35:23.948 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.948 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.948 -07 000000501 INF: FPGA: Recv ZSGSRD 36531
17-03-17 20:35:23.958 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.958 -07 000000433 INF: FPGA: Recv ZSGSRD 36530
17-03-17 20:35:23.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:23.968 -07 000000569 INF: FPGA: Recv ZSGSRD 36537
17-03-17 20:35:23.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.978 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:23.978 -07 000000501 INF: FPGA: Recv ZPIEZORD 32837
17-03-17 20:35:23.988 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.2 V.
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36530 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36530 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36523 (-174.1 uncal um), Max = 36537 (-174.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36530, posNoise = 7, negNoise = 7
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: After move to -0.174978, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: Settle wait time = 1480 ms, measure time = 104 ms (allowed 150 ms), total time = 1584 ms
17-03-17 20:35:23.988 -07 000000482 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:24.038 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-17 20:35:24.038 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:24.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:24.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:24.038 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:24.038 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:24.038 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:24.038 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:24.038 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:35:24.038 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:24.048 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:24.048 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:24.048 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:35:24.048 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:35:24.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:24.098 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:24.298 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:24.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:24.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:24.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:24.338 -07 000000438 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:35:24.338 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:24.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:35:24.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:35:24.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:24.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:24.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:35:24.438 -07 000000433 INF: Autofocus start
17-03-17 20:35:24.438 -07 000000433 INF: MeasureProfile start
17-03-17 20:35:24.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:24.438 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:24.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:24.448 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:24.448 -07 000000433 INF: MeasureProfile done
17-03-17 20:35:24.448 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:35:24.448 -07 000000433 INF: Autofocus finished
17-03-17 20:35:24.648 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:24.648 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:24.648 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174999821549663. ----------
17-03-17 20:35:24.648 -07 000000610 INF: Cycle	40	Tile	13	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:24.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36739, sync = True, waitForSettling = True)
17-03-17 20:35:24.658 -07 000000610 INF: Z Motor: Moving to -0.168180 mm, started at -0.175000 mm, distance = 6.82 um
17-03-17 20:35:24.658 -07 000000610 INF: FPGA: Xmit ZDACW 36739\n [Z Motor]
17-03-17 20:35:24.658 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:35:24.668 -07 000000610 INF: FPGA: 'ZDACW 36739' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:24.668 -07 000000569 INF: FPGA: Recv ZDACR 36739
17-03-17 20:35:24.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35467
17-03-17 20:35:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35474
17-03-17 20:35:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.848 -07 000000433 INF: FPGA: Recv ZSGSRD 35470
17-03-17 20:35:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.858 -07 000000482 INF: FPGA: Recv ZSGSRD 35468
17-03-17 20:35:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.868 -07 000000482 INF: FPGA: Recv ZSGSRD 35472
17-03-17 20:35:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.878 -07 000000482 INF: FPGA: Recv ZSGSRD 35472
17-03-17 20:35:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35469
17-03-17 20:35:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.898 -07 000000482 INF: FPGA: Recv ZSGSRD 35468
17-03-17 20:35:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35468
17-03-17 20:35:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:24.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35472
17-03-17 20:35:24.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:24.928 -07 000000501 INF: FPGA: Recv ZPIEZORD 31433
17-03-17 20:35:24.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:24.938 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -8.9 V.
17-03-17 20:35:24.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35467 (-167.3 uncal um), Max = 35474 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:35:24.938 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 4, negNoise = 3
17-03-17 20:35:24.938 -07 000000610 INF: Z Motor: After move to -0.168180, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:24.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:35:24.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:24.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:24.938 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:24.938 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:24.938 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:24.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:24.938 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:24.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:24.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:24.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:24.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:24.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:24.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:24.938 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:24.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:35:24.938 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:24.948 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:24.948 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:35:24.948 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:24.948 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:24.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36915 150\n [Camera]
17-03-17 20:35:25.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:25.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:25.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:25.578 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:25.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:25.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:25.578 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:25.578 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:25.578 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) start.
17-03-17 20:35:25.588 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:25.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:25.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36915 802
17-03-17 20:35:25.918 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:25.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:35:25.958 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:35:25.958 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:25.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:35:25.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:35:25.958 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:25.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:25.968 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:25.968 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:35:25.968 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:35:26.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:26.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:26.118 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:26.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:26.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:26.228 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:26.228 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:26.228 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:26.228 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:26.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:26.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:26.308 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:26.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36915 150' command took 2 ms to send, 1345 ms to get response, and 1352 ms overall
17-03-17 20:35:26.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:26.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168190156679396. ------
17-03-17 20:35:26.318 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:26.318 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17455 mm
17-03-17 20:35:26.318 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:26.318 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:35:26.318 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:26.318 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:35:26.318 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38131, sync = True, waitForSettling = False)
17-03-17 20:35:26.318 -07 000000551 INF: Z Motor: Moving to -0.174553 mm, started at -0.168190 mm, distance = -6.36 um
17-03-17 20:35:26.328 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:26.328 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:26.328 -07 000000012 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:35:26.338 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:35:26.338 -07 000000415 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:26.338 -07 000000551 INF: FPGA: Xmit ZDACW 38131\n [Z Motor]
17-03-17 20:35:26.338 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:26.338 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:35:26.338 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:35:26.348 -07 000000551 INF: FPGA: 'ZDACW 38131' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:35:26.348 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:26.358 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:26.368 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:26.368 -07 000000433 INF: FPGA: Recv ZDACR 38131
17-03-17 20:35:26.378 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:26.378 -07 000000551 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:35:26.548 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:26.548 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:35:26.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:35:26.628 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:35:26.628 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:26.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:35:26.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:35:26.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:26.638 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:26.638 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:26.638 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 20:35:26.648 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:35:26.738 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:35:26.738 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 20:35:26.768 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:26.778 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:35:26.778 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:26.778 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:26.778 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:35:26.778 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.104 mm/sec
17-03-17 20:35:26.798 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:27.728 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:27.728 -07 000000482 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:35:27.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:27.738 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:27.758 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:27.758 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:27.758 -07 000000415 INF: Y Motor: Moved to 70.6885 after 1439 ms (table move)
17-03-17 20:35:27.758 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174553 mm (DAC = 38131)
17-03-17 20:35:27.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36465
17-03-17 20:35:27.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:27.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.768 -07 000000458 INF: FPGA: Recv ZSGSRD 36454
17-03-17 20:35:27.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.778 -07 000000012 INF: FPGA: Recv ZSGSRD 36460
17-03-17 20:35:27.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.788 -07 000000476 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:35:27.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.798 -07 000000458 INF: FPGA: Recv ZSGSRD 36462
17-03-17 20:35:27.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.808 -07 000000551 INF: FPGA: Recv ZSGSRD 36464
17-03-17 20:35:27.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.828 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.828 -07 000000482 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:35:27.838 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:27.858 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.858 -07 000000415 INF: FPGA: Recv ZSGSRD 36462
17-03-17 20:35:27.868 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:27.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.878 -07 000000482 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:35:27.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:27.888 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:27.888 -07 000000476 INF: FPGA: Recv ZSGSRD 36461
17-03-17 20:35:27.898 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:27.908 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:27.908 -07 000000569 INF: FPGA: Recv ZPIEZORD 32767
17-03-17 20:35:27.918 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.2 V.
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36463 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36463 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36454 (-173.6 uncal um), Max = 36466 (-173.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36463, posNoise = 3, negNoise = 9
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: After move to -0.174553, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: Settle wait time = 1442 ms, measure time = 154 ms (allowed 150 ms), total time = 1596 ms
17-03-17 20:35:27.918 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 20:35:27.918 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:35:27.918 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:27.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:27.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:27.918 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:27.918 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:27.918 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:27.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:27.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:27.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:27.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:27.928 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:27.938 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:35:27.938 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:35:27.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:27.988 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:28.188 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:28.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:28.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:28.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:28.228 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:28.228 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:28.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:35:28.238 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.986717,
17-03-17 20:35:28.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:35:28.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:28.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:28.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:35:28.328 -07 000000576 INF: Autofocus start
17-03-17 20:35:28.328 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:28.328 -07 000000576 INF: MeasureProfile start
17-03-17 20:35:28.328 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:28.338 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:28.338 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:28.338 -07 000000576 INF: MeasureProfile done
17-03-17 20:35:28.338 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:35:28.338 -07 000000576 INF: Autofocus finished
17-03-17 20:35:28.538 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:28.538 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:28.538 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174569399336165. ----------
17-03-17 20:35:28.548 -07 000000610 INF: Cycle	40	Tile	14	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:28.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36646, sync = True, waitForSettling = True)
17-03-17 20:35:28.548 -07 000000610 INF: Z Motor: Moving to -0.167755 mm, started at -0.174569 mm, distance = 6.81 um
17-03-17 20:35:28.548 -07 000000610 INF: FPGA: Xmit ZDACW 36646\n [Z Motor]
17-03-17 20:35:28.548 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:35:28.558 -07 000000610 INF: FPGA: 'ZDACW 36646' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:28.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:28.558 -07 000000482 INF: FPGA: Recv ZDACR 36646
17-03-17 20:35:28.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.718 -07 000000482 INF: FPGA: Recv ZSGSRD 35405
17-03-17 20:35:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.728 -07 000000012 INF: FPGA: Recv ZSGSRD 35400
17-03-17 20:35:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.738 -07 000000576 INF: FPGA: Recv ZSGSRD 35404
17-03-17 20:35:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35407
17-03-17 20:35:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35405
17-03-17 20:35:28.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.768 -07 000000012 INF: FPGA: Recv ZSGSRD 35406
17-03-17 20:35:28.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35400
17-03-17 20:35:28.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.788 -07 000000012 INF: FPGA: Recv ZSGSRD 35405
17-03-17 20:35:28.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35408
17-03-17 20:35:28.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:28.808 -07 000000569 INF: FPGA: Recv ZSGSRD 35401
17-03-17 20:35:28.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:28.818 -07 000000576 INF: FPGA: Recv ZPIEZORD 31383
17-03-17 20:35:28.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:28.828 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -8.9 V.
17-03-17 20:35:28.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35404 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35405 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35400 (-166.9 uncal um), Max = 35408 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:35:28.828 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35404, posNoise = 4, negNoise = 4
17-03-17 20:35:28.828 -07 000000610 INF: Z Motor: After move to -0.167755, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:28.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:35:28.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:28.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:28.828 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:28.828 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:28.828 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:28.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:28.828 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:28.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:28.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:28.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:28.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:28.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:28.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:28.828 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:28.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:28.828 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:28.838 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:28.838 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:28.838 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:28.838 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:28.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36823 150\n [Camera]
17-03-17 20:35:29.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:29.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:29.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:29.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:29.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:29.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:29.468 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:29.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:29.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:29.468 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:29.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:29.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36823 802
17-03-17 20:35:29.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:29.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:35:29.848 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:35:29.848 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:29.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:35:29.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:35:29.848 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:29.848 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:29.848 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:35:29.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:29.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:35:30.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:30.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:30.008 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:30.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:30.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:30.118 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:30.118 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:30.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:30.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:30.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:30.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:30.198 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:30.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36823 150' command took 2 ms to send, 1344 ms to get response, and 1351 ms overall
17-03-17 20:35:30.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:30.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.16776615867804. ------
17-03-17 20:35:30.198 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:30.198 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17437 mm
17-03-17 20:35:30.198 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:30.208 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:30.208 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:35:30.208 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 20:35:30.208 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:30.208 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:35:30.208 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38092, sync = True, waitForSettling = False)
17-03-17 20:35:30.208 -07 000000626 INF: Z Motor: Moving to -0.174374 mm, started at -0.167766 mm, distance = -6.61 um
17-03-17 20:35:30.208 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:35:30.218 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:30.218 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:30.218 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:30.218 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:30.218 -07 000000478 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:35:30.228 -07 000000626 INF: FPGA: Xmit ZDACW 38092\n [Z Motor]
17-03-17 20:35:30.228 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:35:30.238 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:30.238 -07 000000626 INF: FPGA: 'ZDACW 38092' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:35:30.248 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:30.248 -07 000000431 INF: FPGA: Recv ZDACR 38092
17-03-17 20:35:30.258 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:30.258 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:35:30.418 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:30.418 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 20:35:30.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:35:30.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:35:30.518 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:30.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:35:30.528 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:35:30.528 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:30.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:30.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:35:30.528 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:30.538 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:35:30.608 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:35:30.608 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:35:30.648 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:30.648 -07 000000569 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:35:30.658 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:30.658 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:30.658 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:35:30.658 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 20:35:31.608 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:31.608 -07 000000429 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:35:31.618 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.618 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:31.638 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:31.638 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:31.638 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1430 ms (table move)
17-03-17 20:35:31.638 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174374 mm (DAC = 38092)
17-03-17 20:35:31.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.638 -07 000000478 INF: FPGA: Recv ZSGSRD 36434
17-03-17 20:35:31.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:31.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.648 -07 000000478 INF: FPGA: Recv ZSGSRD 36427
17-03-17 20:35:31.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36429
17-03-17 20:35:31.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.668 -07 000000429 INF: FPGA: Recv ZSGSRD 36439
17-03-17 20:35:31.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.678 -07 000000478 INF: FPGA: Recv ZSGSRD 36438
17-03-17 20:35:31.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.688 -07 000000012 INF: FPGA: Recv ZSGSRD 36435
17-03-17 20:35:31.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.698 -07 000000429 INF: FPGA: Recv ZSGSRD 36436
17-03-17 20:35:31.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36434
17-03-17 20:35:31.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36426
17-03-17 20:35:31.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:31.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36427
17-03-17 20:35:31.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.738 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:31.738 -07 000000429 INF: FPGA: Recv ZPIEZORD 32710
17-03-17 20:35:31.748 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.2 V.
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36432 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36434 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36426 (-173.4 uncal um), Max = 36439 (-173.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36432, posNoise = 7, negNoise = 6
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: After move to -0.174374, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:35:31.748 -07 000000482 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:31.798 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:35:31.798 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:31.798 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:31.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:31.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:31.798 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:31.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:31.808 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:31.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:31.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:31.808 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:31.808 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:31.808 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:31.818 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:35:31.818 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:35:31.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:31.868 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:32.068 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:32.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:32.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:32.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:32.108 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:32.108 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:32.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:35:32.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:35:32.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:32.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:32.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:35:32.208 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:32.208 -07 000000482 INF: Autofocus start
17-03-17 20:35:32.208 -07 000000482 INF: MeasureProfile start
17-03-17 20:35:32.208 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:32.218 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:32.218 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:32.218 -07 000000482 INF: MeasureProfile done
17-03-17 20:35:32.218 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:35:32.218 -07 000000482 INF: Autofocus finished
17-03-17 20:35:32.418 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:32.418 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:32.418 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.17437024875977. ----------
17-03-17 20:35:32.418 -07 000000610 INF: Cycle	40	Tile	15	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:32.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36607, sync = True, waitForSettling = True)
17-03-17 20:35:32.428 -07 000000610 INF: Z Motor: Moving to -0.167576 mm, started at -0.174370 mm, distance = 6.79 um
17-03-17 20:35:32.428 -07 000000610 INF: FPGA: Xmit ZDACW 36607\n [Z Motor]
17-03-17 20:35:32.428 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:35:32.438 -07 000000610 INF: FPGA: 'ZDACW 36607' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:32.438 -07 000000476 INF: FPGA: Recv ZDACR 36607
17-03-17 20:35:32.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:32.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35385
17-03-17 20:35:32.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.608 -07 000000429 INF: FPGA: Recv ZSGSRD 35370
17-03-17 20:35:32.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35372
17-03-17 20:35:32.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.628 -07 000000626 INF: FPGA: Recv ZSGSRD 35378
17-03-17 20:35:32.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.638 -07 000000429 INF: FPGA: Recv ZSGSRD 35376
17-03-17 20:35:32.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.648 -07 000000626 INF: FPGA: Recv ZSGSRD 35371
17-03-17 20:35:32.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35367
17-03-17 20:35:32.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.668 -07 000000626 INF: FPGA: Recv ZSGSRD 35379
17-03-17 20:35:32.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35377
17-03-17 20:35:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:32.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35374
17-03-17 20:35:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:32.698 -07 000000626 INF: FPGA: Recv ZPIEZORD 31333
17-03-17 20:35:32.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:32.708 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -8.9 V.
17-03-17 20:35:32.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35375 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35375 (-166.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35367 (-166.7 uncal um), Max = 35385 (-166.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:32.708 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35375, posNoise = 10, negNoise = 8
17-03-17 20:35:32.708 -07 000000610 INF: Z Motor: After move to -0.167576, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:32.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:35:32.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:32.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:32.708 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:32.708 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:32.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:32.708 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:32.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:32.708 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:32.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:32.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:32.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:32.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:32.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:32.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:32.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:32.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:32.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:32.718 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:32.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:35:32.728 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:35:32.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36784 150\n [Camera]
17-03-17 20:35:32.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:33.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:33.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:33.348 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:33.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:33.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:33.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:33.358 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:33.358 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:33.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:33.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:33.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36784 805
17-03-17 20:35:33.598 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.978563,
17-03-17 20:35:33.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:33.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:35:33.728 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:35:33.728 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:33.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:35:33.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:35:33.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:33.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:33.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:35:33.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:33.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:35:33.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:33.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:33.888 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:33.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:33.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:33.998 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:34.008 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:34.008 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:34.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:34.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:34.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:34.088 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:34.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36784 150' command took 2 ms to send, 1350 ms to get response, and 1354 ms overall
17-03-17 20:35:34.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:34.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167579856525929. ------
17-03-17 20:35:34.088 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:34.088 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17360 mm
17-03-17 20:35:34.088 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:34.088 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:35:34.088 -07 000000476 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:35:34.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:34.088 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37923, sync = True, waitForSettling = False)
17-03-17 20:35:34.088 -07 000000551 INF: Z Motor: Moving to -0.173600 mm, started at -0.167580 mm, distance = -6.02 um
17-03-17 20:35:34.098 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:34.098 -07 000000551 INF: FPGA: Xmit ZDACW 37923\n [Z Motor]
17-03-17 20:35:34.098 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:35:34.108 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:34.108 -07 000000551 INF: FPGA: 'ZDACW 37923' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:35:34.108 -07 000000576 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:35:34.118 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:34.118 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:35:34.118 -07 000000476 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:34.118 -07 000000476 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:34.118 -07 000000476 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:35:34.128 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:34.128 -07 000000448 INF: FPGA: Recv ZDACR 37923
17-03-17 20:35:34.138 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:34.138 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:34.138 -07 000000551 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:35:34.318 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:34.318 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:35:34.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:35:34.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:35:34.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:34.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:35:34.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:35:34.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:34.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:34.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:34.408 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 20:35:34.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:35:34.508 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:35:34.508 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:35:34.548 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:34.548 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:35:34.558 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:34.558 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:34.558 -07 000000476 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:35:34.558 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 20:35:35.508 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:35.508 -07 000000551 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:35:35.518 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:35.518 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:35.538 -07 000000476 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:35.538 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:35.538 -07 000000476 INF: Y Motor: Moved to 72.3496 after 1445 ms (table move)
17-03-17 20:35:35.538 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173600 mm (DAC = 37923)
17-03-17 20:35:35.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.538 -07 000000476 INF: FPGA: Recv ZSGSRD 36316
17-03-17 20:35:35.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:35:35.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.548 -07 000000476 INF: FPGA: Recv ZSGSRD 36316
17-03-17 20:35:35.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36312
17-03-17 20:35:35.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.568 -07 000000476 INF: FPGA: Recv ZSGSRD 36317
17-03-17 20:35:35.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36318
17-03-17 20:35:35.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.588 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.588 -07 000000476 INF: FPGA: Recv ZSGSRD 36310
17-03-17 20:35:35.598 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.598 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.598 -07 000000476 INF: FPGA: Recv ZSGSRD 36314
17-03-17 20:35:35.608 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.608 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36306
17-03-17 20:35:35.618 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.618 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.618 -07 000000448 INF: FPGA: Recv ZSGSRD 36315
17-03-17 20:35:35.628 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:35.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36310
17-03-17 20:35:35.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.638 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:35.638 -07 000000429 INF: FPGA: Recv ZPIEZORD 32595
17-03-17 20:35:35.648 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.2 V.
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36313 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36314 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36306 (-172.7 uncal um), Max = 36318 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36313, posNoise = 5, negNoise = 7
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: After move to -0.173600, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:35:35.648 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:35.698 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:35:35.698 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:35.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:35.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:35.698 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:35.698 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:35.698 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:35.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:35.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:35.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:35.708 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:35.708 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:35.718 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:35:35.718 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:35:35.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:35.758 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:35.958 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:35.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:35.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:35.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:35.998 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:35.998 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:35.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:35:36.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:35:36.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:36.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:36.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:35:36.098 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:36.098 -07 000000433 INF: Autofocus start
17-03-17 20:35:36.098 -07 000000433 INF: MeasureProfile start
17-03-17 20:35:36.098 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:36.108 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:36.108 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:36.118 -07 000000433 INF: MeasureProfile done
17-03-17 20:35:36.118 -07 000000433 INF: X=96  Z correction [um]=0.4193256
17-03-17 20:35:36.118 -07 000000433 INF: Autofocus finished
17-03-17 20:35:36.308 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:36.308 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:36.308 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173605767514901. ----------
17-03-17 20:35:36.308 -07 000000610 INF: Cycle	40	Tile	16	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:36.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36527, sync = True, waitForSettling = True)
17-03-17 20:35:36.318 -07 000000610 INF: Z Motor: Moving to -0.167210 mm, started at -0.173606 mm, distance = 6.40 um
17-03-17 20:35:36.318 -07 000000610 INF: FPGA: Xmit ZDACW 36527\n [Z Motor]
17-03-17 20:35:36.318 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:35:36.328 -07 000000610 INF: FPGA: 'ZDACW 36527' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:36.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:36.328 -07 000000448 INF: FPGA: Recv ZDACR 36527
17-03-17 20:35:36.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:36.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35317
17-03-17 20:35:36.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35321
17-03-17 20:35:36.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35318
17-03-17 20:35:36.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35323
17-03-17 20:35:36.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35321
17-03-17 20:35:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.538 -07 000000627 INF: FPGA: Recv ZSGSRD 35319
17-03-17 20:35:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.548 -07 000000415 INF: FPGA: Recv ZSGSRD 35320
17-03-17 20:35:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35317
17-03-17 20:35:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35320
17-03-17 20:35:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:36.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35315
17-03-17 20:35:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:36.588 -07 000000476 INF: FPGA: Recv ZPIEZORD 31263
17-03-17 20:35:36.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:36.598 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.0 V.
17-03-17 20:35:36.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35319 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35320 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35315 (-166.3 uncal um), Max = 35323 (-166.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:35:36.598 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35319, posNoise = 4, negNoise = 4
17-03-17 20:35:36.598 -07 000000610 INF: Z Motor: After move to -0.167210, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:36.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:35:36.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:36.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:36.598 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:36.598 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:36.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:36.598 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:36.598 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:36.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:36.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:36.598 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:36.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:35:36.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:36.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:36.608 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:36.608 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:36.608 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:36.618 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:36.618 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:36.618 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:36.618 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:36.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36704 150\n [Camera]
17-03-17 20:35:36.798 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:36.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:37.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:37.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:37.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:37.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:37.268 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:37.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:37.278 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:37.278 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:37.278 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:37.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:37.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36704 802
17-03-17 20:35:37.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:37.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:35:37.658 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:35:37.658 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:37.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:35:37.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:35:37.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:37.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:37.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:37.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:35:37.668 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:35:37.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:37.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:37.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:37.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:37.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:37.888 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:37.898 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:37.898 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:37.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:37.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:37.968 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:37.968 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:37.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36704 150' command took 2 ms to send, 1344 ms to get response, and 1351 ms overall
17-03-17 20:35:37.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:37.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16722010064599. ------
17-03-17 20:35:37.968 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:37.968 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17368 mm
17-03-17 20:35:37.968 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:37.978 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:35:37.978 -07 000000448 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:35:37.978 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:38.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:35:38.278 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:35:38.278 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:38.278 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:35:38.288 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:35:38.288 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:38.288 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:38.288 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:38.288 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 20:35:38.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:35:38.308 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37940, sync = True, waitForSettling = False)
17-03-17 20:35:38.308 -07 000000627 INF: Z Motor: Moving to -0.173678 mm, started at -0.167220 mm, distance = -6.46 um
17-03-17 20:35:38.308 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:38.308 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:35:38.308 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 321 ms to get response, and 327 ms overall
17-03-17 20:35:38.308 -07 000000448 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:38.308 -07 000000627 INF: FPGA: Xmit ZDACW 37940\n [Z Motor]
17-03-17 20:35:38.308 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 331 ms overall
17-03-17 20:35:38.308 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:35:38.308 -07 000000448 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:38.308 -07 000000448 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:35:38.318 -07 000000627 INF: FPGA: 'ZDACW 37940' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:35:38.318 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:38.328 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:38.338 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:38.338 -07 000000415 INF: FPGA: Recv ZDACR 37940
17-03-17 20:35:38.348 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:38.348 -07 000000627 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:35:38.528 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:38.528 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 20:35:38.688 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:35:38.688 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 20:35:38.728 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:38.728 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:35:38.738 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:38.738 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:38.738 -07 000000448 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:35:38.738 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec
17-03-17 20:35:38.958 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.978563,
17-03-17 20:35:39.688 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:39.688 -07 000000415 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:35:39.698 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:39.698 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:39.718 -07 000000448 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:39.718 -07 000000448 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:39.718 -07 000000448 INF: Y Motor: Moved to 73.1763 after 1739 ms (table move)
17-03-17 20:35:39.718 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173678 mm (DAC = 37940)
17-03-17 20:35:39.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:35:39.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:39.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.728 -07 000000551 INF: FPGA: Recv ZSGSRD 36323
17-03-17 20:35:39.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36323
17-03-17 20:35:39.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.748 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:35:39.758 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.758 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.758 -07 000000551 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:35:39.768 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.768 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.768 -07 000000482 INF: FPGA: Recv ZSGSRD 36333
17-03-17 20:35:39.778 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.778 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.778 -07 000000627 INF: FPGA: Recv ZSGSRD 36329
17-03-17 20:35:39.788 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.788 -07 000000448 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:35:39.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.798 -07 000000551 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:35:39.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.808 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:39.808 -07 000000448 INF: FPGA: Recv ZSGSRD 36320
17-03-17 20:35:39.818 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.818 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:39.818 -07 000000458 INF: FPGA: Recv ZPIEZORD 32592
17-03-17 20:35:39.828 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.3 V.
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36327 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36326 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36320 (-172.8 uncal um), Max = 36333 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36327, posNoise = 6, negNoise = 7
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: After move to -0.173678, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: Settle wait time = 1415 ms, measure time = 106 ms (allowed 150 ms), total time = 1521 ms
17-03-17 20:35:39.828 -07 000000476 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:39.878 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1900 ms
17-03-17 20:35:39.878 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:39.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:39.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:39.878 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:39.878 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:39.878 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:39.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:39.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:35:39.878 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:39.888 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:39.888 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:39.898 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:35:39.898 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:35:39.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:39.948 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:40.148 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:40.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:40.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:40.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:40.188 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:40.188 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:40.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:35:40.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:35:40.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:40.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:35:40.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:35:40.288 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:40.288 -07 000000627 INF: Autofocus start
17-03-17 20:35:40.288 -07 000000627 INF: MeasureProfile start
17-03-17 20:35:40.288 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:40.298 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:40.298 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:40.308 -07 000000627 INF: MeasureProfile done
17-03-17 20:35:40.308 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:35:40.308 -07 000000627 INF: Autofocus finished
17-03-17 20:35:40.498 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:40.498 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:40.498 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173695706484885. ----------
17-03-17 20:35:40.508 -07 000000610 INF: Cycle	40	Tile	17	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:40.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = True)
17-03-17 20:35:40.508 -07 000000610 INF: Z Motor: Moving to -0.166963 mm, started at -0.173696 mm, distance = 6.73 um
17-03-17 20:35:40.508 -07 000000610 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-17 20:35:40.508 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:35:40.518 -07 000000610 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:40.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:40.518 -07 000000012 INF: FPGA: Recv ZDACR 36473
17-03-17 20:35:40.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:40.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:35:40.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35280
17-03-17 20:35:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35283
17-03-17 20:35:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35279
17-03-17 20:35:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.718 -07 000000448 INF: FPGA: Recv ZSGSRD 35288
17-03-17 20:35:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:35:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.738 -07 000000551 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:35:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.748 -07 000000627 INF: FPGA: Recv ZSGSRD 35285
17-03-17 20:35:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.758 -07 000000501 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:35:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:40.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:35:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:40.778 -07 000000501 INF: FPGA: Recv ZPIEZORD 31206
17-03-17 20:35:40.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:40.788 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.0 V.
17-03-17 20:35:40.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35282 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35281 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35276 (-166.1 uncal um), Max = 35288 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:35:40.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35282, posNoise = 6, negNoise = 6
17-03-17 20:35:40.788 -07 000000610 INF: Z Motor: After move to -0.166963, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:40.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:35:40.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:40.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:40.788 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:40.788 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:40.788 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:40.788 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:40.788 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:40.788 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:40.788 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:40.788 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:40.788 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:40.788 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:40.798 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:40.798 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:40.798 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:35:40.798 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:40.808 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:40.808 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:35:40.808 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:35:40.808 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:35:40.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36650 150\n [Camera]
17-03-17 20:35:41.008 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:41.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:41.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:41.428 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:41.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:41.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:41.428 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:41.428 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:41.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:41.428 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:41.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:41.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36650 802
17-03-17 20:35:41.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:41.798 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:41.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 20:35:41.798 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 20:35:41.798 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:41.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:41.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:35:41.808 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:35:41.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:41.808 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:41.808 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:35:41.808 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:35:41.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:41.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:41.968 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:42.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:42.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:42.078 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:42.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:42.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:42.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:42.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:42.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:42.158 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:42.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36650 150' command took 2 ms to send, 1345 ms to get response, and 1351 ms overall
17-03-17 20:35:42.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:42.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166982404796745. ------
17-03-17 20:35:42.168 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:42.168 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17335 mm
17-03-17 20:35:42.168 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:42.168 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:35:42.168 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:35:42.178 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:42.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:35:42.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:35:42.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:42.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:35:42.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:35:42.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:42.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:42.478 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:42.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:35:42.488 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:35:42.488 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:42.488 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:35:42.488 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 319 ms to get response, and 329 ms overall
17-03-17 20:35:42.498 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 309 ms to get response, and 325 ms overall
17-03-17 20:35:42.498 -07 000000012 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:42.498 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:42.498 -07 000000012 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:35:42.498 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:42.498 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37869, sync = True, waitForSettling = False)
17-03-17 20:35:42.498 -07 000000627 INF: Z Motor: Moving to -0.173353 mm, started at -0.166982 mm, distance = -6.37 um
17-03-17 20:35:42.508 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:42.518 -07 000000627 INF: FPGA: Xmit ZDACW 37869\n [Z Motor]
17-03-17 20:35:42.518 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:35:42.528 -07 000000627 INF: FPGA: 'ZDACW 37869' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:35:42.528 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:42.528 -07 000000476 INF: FPGA: Recv ZDACR 37869
17-03-17 20:35:42.538 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:42.538 -07 000000627 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:35:42.698 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:42.698 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 20:35:42.878 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:35:42.878 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:35:42.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:42.918 -07 000000476 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:35:42.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:42.918 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:42.918 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:35:42.918 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-17 20:35:43.868 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:43.868 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:35:43.878 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:43.878 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:43.888 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:43.888 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:35:43.888 -07 000000012 INF: Y Motor: Moved to 74.0083 after 1725 ms (table move)
17-03-17 20:35:43.898 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173353 mm (DAC = 37869)
17-03-17 20:35:43.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.898 -07 000000448 INF: FPGA: Recv ZSGSRD 36281
17-03-17 20:35:43.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:43.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.908 -07 000000476 INF: FPGA: Recv ZSGSRD 36269
17-03-17 20:35:43.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.918 -07 000000012 INF: FPGA: Recv ZSGSRD 36273
17-03-17 20:35:43.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.928 -07 000000012 INF: FPGA: Recv ZSGSRD 36282
17-03-17 20:35:43.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.938 -07 000000012 INF: FPGA: Recv ZSGSRD 36273
17-03-17 20:35:43.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.948 -07 000000012 INF: FPGA: Recv ZSGSRD 36277
17-03-17 20:35:43.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.958 -07 000000448 INF: FPGA: Recv ZSGSRD 36282
17-03-17 20:35:43.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.968 -07 000000476 INF: FPGA: Recv ZSGSRD 36271
17-03-17 20:35:43.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:43.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:43.998 -07 000000476 INF: FPGA: Recv ZSGSRD 36276
17-03-17 20:35:44.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:44.028 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.028 -07 000000448 INF: FPGA: Recv ZSGSRD 36277
17-03-17 20:35:44.038 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:44.058 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:44.058 -07 000000012 INF: FPGA: Recv ZPIEZORD 32517
17-03-17 20:35:44.068 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.3 V.
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36276 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36276 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36269 (-172.4 uncal um), Max = 36282 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36276, posNoise = 6, negNoise = 7
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: After move to -0.173353, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: Settle wait time = 1398 ms, measure time = 168 ms (allowed 150 ms), total time = 1566 ms
17-03-17 20:35:44.068 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-17 20:35:44.068 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1900 ms
17-03-17 20:35:44.068 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:44.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:44.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:44.068 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:44.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:44.068 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:44.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:44.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:44.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:44.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:35:44.078 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:44.088 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:35:44.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:35:44.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:44.128 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:44.328 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:44.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:44.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:44.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:44.338 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.997626,
17-03-17 20:35:44.368 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:44.368 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:44.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:35:44.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:35:44.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:44.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:44.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:35:44.468 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:44.468 -07 000000438 INF: Autofocus start
17-03-17 20:35:44.468 -07 000000438 INF: MeasureProfile start
17-03-17 20:35:44.468 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:44.478 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:44.478 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:44.478 -07 000000438 INF: MeasureProfile done
17-03-17 20:35:44.478 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:35:44.478 -07 000000438 INF: Autofocus finished
17-03-17 20:35:44.678 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:44.678 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:44.678 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173368071665655. ----------
17-03-17 20:35:44.678 -07 000000610 INF: Cycle	40	Tile	18	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:44.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36366, sync = True, waitForSettling = True)
17-03-17 20:35:44.688 -07 000000610 INF: Z Motor: Moving to -0.166473 mm, started at -0.173368 mm, distance = 6.90 um
17-03-17 20:35:44.688 -07 000000610 INF: FPGA: Xmit ZDACW 36366\n [Z Motor]
17-03-17 20:35:44.688 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:35:44.698 -07 000000610 INF: FPGA: 'ZDACW 36366' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:44.698 -07 000000438 INF: FPGA: Recv ZDACR 36366
17-03-17 20:35:44.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35200
17-03-17 20:35:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.868 -07 000000429 INF: FPGA: Recv ZSGSRD 35205
17-03-17 20:35:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.878 -07 000000569 INF: FPGA: Recv ZSGSRD 35205
17-03-17 20:35:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.888 -07 000000012 INF: FPGA: Recv ZSGSRD 35201
17-03-17 20:35:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35205
17-03-17 20:35:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35210
17-03-17 20:35:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:35:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35208
17-03-17 20:35:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35201
17-03-17 20:35:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.938 -07 000000448 INF: FPGA: Recv ZSGSRD 35197
17-03-17 20:35:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:44.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35205
17-03-17 20:35:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:44.958 -07 000000429 INF: FPGA: Recv ZPIEZORD 31112
17-03-17 20:35:44.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:44.968 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.0 V.
17-03-17 20:35:44.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35205 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35197 (-165.6 uncal um), Max = 35210 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:35:44.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 6, negNoise = 7
17-03-17 20:35:44.968 -07 000000610 INF: Z Motor: After move to -0.166473, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:44.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:35:44.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:44.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:44.968 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:44.968 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:44.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:44.968 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:44.968 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:44.968 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:44.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:44.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:44.968 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:44.968 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:44.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:44.978 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:44.978 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:44.978 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:44.978 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:35:44.978 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:44.988 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:35:44.988 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:44.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36542 150\n [Camera]
17-03-17 20:35:45.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:35:45.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:45.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:45.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:45.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:45.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:45.608 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:45.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:45.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:45.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:45.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:45.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36542 802
17-03-17 20:35:45.948 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:35:45.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:35:46.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:35:46.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:46.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:46.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:35:46.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:35:46.008 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:35:46.008 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:46.008 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:46.018 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:35:46.148 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1153
17-03-17 20:35:46.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1153
17-03-17 20:35:46.148 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:46.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1153
17-03-17 20:35:46.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1153
17-03-17 20:35:46.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:46.258 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:46.258 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:46.258 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:46.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:46.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:35:46.338 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:46.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36542 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:35:46.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:35:46.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166481316249688. ------
17-03-17 20:35:46.348 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:46.348 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17287 mm
17-03-17 20:35:46.348 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:46.348 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:35:46.348 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:35:46.358 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:46.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:35:46.658 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:35:46.658 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:46.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:35:46.668 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:35:46.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:46.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:46.668 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:46.668 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 20:35:46.678 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:35:46.678 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37763, sync = True, waitForSettling = False)
17-03-17 20:35:46.678 -07 000000012 INF: Z Motor: Moving to -0.172868 mm, started at -0.166481 mm, distance = -6.39 um
17-03-17 20:35:46.678 -07 000000012 INF: FPGA: Xmit ZDACW 37763\n [Z Motor]
17-03-17 20:35:46.688 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:46.688 -07 000000478 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:35:46.688 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 330 ms to get response, and 336 ms overall
17-03-17 20:35:46.688 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 320 ms to get response, and 333 ms overall
17-03-17 20:35:46.688 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:46.688 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:46.688 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:35:46.688 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:35:46.688 -07 000000012 INF: FPGA: 'ZDACW 37763' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:35:46.688 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:46.698 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:46.708 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:46.708 -07 000000478 INF: FPGA: Recv ZDACR 37763
17-03-17 20:35:46.718 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:35:46.718 -07 000000012 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 20:35:46.798 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:46.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:46.888 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:46.888 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 20:35:47.068 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:35:47.068 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 20:35:47.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:47.098 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:35:47.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:35:47.108 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:47.108 -07 000000569 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:35:47.108 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-17 20:35:48.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:48.058 -07 000000012 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:35:48.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.068 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:48.078 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:48.078 -07 000000569 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:35:48.078 -07 000000569 INF: Y Motor: Moved to 74.8325 after 1729 ms (table move)
17-03-17 20:35:48.078 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172868 mm (DAC = 37763)
17-03-17 20:35:48.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.088 -07 000000012 INF: FPGA: Recv ZSGSRD 36195
17-03-17 20:35:48.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:35:48.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.088 -07 000000478 INF: FPGA: Recv ZSGSRD 36206
17-03-17 20:35:48.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:48.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.098 -07 000000012 INF: FPGA: Recv ZSGSRD 36190
17-03-17 20:35:48.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.108 -07 000000478 INF: FPGA: Recv ZSGSRD 36195
17-03-17 20:35:48.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.118 -07 000000476 INF: FPGA: Recv ZSGSRD 36201
17-03-17 20:35:48.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.128 -07 000000569 INF: FPGA: Recv ZSGSRD 36198
17-03-17 20:35:48.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.138 -07 000000478 INF: FPGA: Recv ZSGSRD 36201
17-03-17 20:35:48.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.148 -07 000000476 INF: FPGA: Recv ZSGSRD 36199
17-03-17 20:35:48.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.158 -07 000000478 INF: FPGA: Recv ZSGSRD 36201
17-03-17 20:35:48.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:48.168 -07 000000569 INF: FPGA: Recv ZSGSRD 36192
17-03-17 20:35:48.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.178 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:48.178 -07 000000569 INF: FPGA: Recv ZPIEZORD 32449
17-03-17 20:35:48.188 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.3 V.
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36198 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36198 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36190 (-171.9 uncal um), Max = 36206 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36198, posNoise = 8, negNoise = 8
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: After move to -0.172868, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: Settle wait time = 1400 ms, measure time = 101 ms (allowed 150 ms), total time = 1501 ms
17-03-17 20:35:48.188 -07 000000429 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:48.238 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1886 ms
17-03-17 20:35:48.238 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:48.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:48.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:48.238 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:48.238 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:48.238 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:48.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:48.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:48.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:48.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:48.248 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:48.258 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:35:48.258 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:35:48.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:48.308 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:48.508 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:48.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:48.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:48.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:48.548 -07 000000012 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:35:48.548 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:48.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 20:35:48.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:35:48.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:48.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:48.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:35:48.648 -07 000000012 INF: Autofocus start
17-03-17 20:35:48.648 -07 000000012 INF: MeasureProfile start
17-03-17 20:35:48.648 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:48.648 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:48.658 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:48.658 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:48.658 -07 000000012 INF: MeasureProfile done
17-03-17 20:35:48.658 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:35:48.658 -07 000000012 INF: Autofocus finished
17-03-17 20:35:48.858 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:48.858 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:35:48.858 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172866983118598. ----------
17-03-17 20:35:48.868 -07 000000610 INF: Cycle	40	Tile	19	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:48.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36295, sync = True, waitForSettling = True)
17-03-17 20:35:48.868 -07 000000610 INF: Z Motor: Moving to -0.166148 mm, started at -0.172867 mm, distance = 6.72 um
17-03-17 20:35:48.868 -07 000000610 INF: FPGA: Xmit ZDACW 36295\n [Z Motor]
17-03-17 20:35:48.868 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:35:48.878 -07 000000610 INF: FPGA: 'ZDACW 36295' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:35:48.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:48.878 -07 000000429 INF: FPGA: Recv ZDACR 36295
17-03-17 20:35:48.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:48.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:49.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.038 -07 000000478 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:35:49.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:49.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:35:49.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.068 -07 000000476 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:35:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:35:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35159
17-03-17 20:35:49.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.098 -07 000000482 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:35:49.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35156
17-03-17 20:35:49.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.118 -07 000000429 INF: FPGA: Recv ZSGSRD 35154
17-03-17 20:35:49.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.128 -07 000000012 INF: FPGA: Recv ZSGSRD 35148
17-03-17 20:35:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:49.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35157
17-03-17 20:35:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:49.148 -07 000000626 INF: FPGA: Recv ZPIEZORD 31015
17-03-17 20:35:49.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:49.158 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.1 V.
17-03-17 20:35:49.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35154 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35154 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35148 (-165.3 uncal um), Max = 35159 (-165.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:35:49.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35154, posNoise = 5, negNoise = 6
17-03-17 20:35:49.158 -07 000000610 INF: Z Motor: After move to -0.166148, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:49.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 20:35:49.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:49.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:49.158 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:49.158 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:49.158 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:49.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:49.158 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:49.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:49.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:35:49.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:49.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:35:49.158 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:49.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:35:49.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:49.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:49.168 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:49.178 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:49.178 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:35:49.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:35:49.178 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:35:49.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 36472 150\n [Camera]
17-03-17 20:35:49.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:35:49.698 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.016692,
17-03-17 20:35:49.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:49.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:49.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:49.798 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:49.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:49.798 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:49.798 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:49.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:49.808 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:49.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:49.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36472 802
17-03-17 20:35:50.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:50.178 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:35:50.178 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:35:50.178 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:50.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:35:50.178 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:35:50.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:50.188 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:50.188 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:35:50.188 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:35:50.188 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:35:50.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:50.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:50.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:50.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:50.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:50.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:50.348 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:50.348 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:50.348 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:50.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:50.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:35:50.528 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:50.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 36472 150' command took 2 ms to send, 1347 ms to get response, and 1351 ms overall
17-03-17 20:35:50.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:35:50.748 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:35:50.748 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:50.748 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:35:50.748 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:35:50.748 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:50.758 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:50.758 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:35:50.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:35:50.758 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:50.758 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:35:50.798 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:35:50.798 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:35:50.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:35:50.838 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:35:50.838 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:35:50.838 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 20:35:50.848 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:35:50.848 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:35:51.348 -07 000000429 INF: FPGA: Recv EMIN
17-03-17 20:35:51.348 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-17 20:35:51.348 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:35:51.348 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 20:35:51.358 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:51.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:35:51.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.1661601056426. ------
17-03-17 20:35:51.358 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:51.358 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14039 mm
17-03-17 20:35:51.358 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:51.358 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:35:51.358 -07 000000626 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:35:51.358 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30667, sync = True, waitForSettling = False)
17-03-17 20:35:51.358 -07 000000569 INF: Z Motor: Moving to -0.140385 mm, started at -0.166160 mm, distance = 25.78 um
17-03-17 20:35:51.358 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:51.368 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:51.368 -07 000000569 INF: FPGA: Xmit ZDACW 30667\n [Z Motor]
17-03-17 20:35:51.368 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:35:51.378 -07 000000569 INF: FPGA: 'ZDACW 30667' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:35:51.378 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:51.378 -07 000000431 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:35:51.388 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:51.388 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:35:51.388 -07 000000626 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:51.388 -07 000000626 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:35:51.388 -07 000000626 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:35:51.398 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:51.398 -07 000000431 INF: FPGA: Recv ZDACR 30667
17-03-17 20:35:51.408 -07 000000626 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:35:51.408 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:51.408 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:35:51.588 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:51.588 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:35:51.798 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:53.028 -07 000000431 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 20:35:53.028 -07 000000626 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 20:35:53.028 -07 000000626 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:35:53.028 -07 000000626 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:35:53.028 -07 000000626 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 20:35:55.068 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.030322,
17-03-17 20:35:55.878 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:55.878 -07 000000431 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:35:55.888 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:55.888 -07 000000626 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:55.908 -07 000000626 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:55.918 -07 000000626 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 20:35:55.918 -07 000000626 INF: Y Motor: Moved to 59.9116 after 4552 ms
17-03-17 20:35:55.918 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140385 mm (DAC = 30667)
17-03-17 20:35:55.918 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.918 -07 000000478 INF: FPGA: Recv ZSGSRD 31150
17-03-17 20:35:55.928 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:35:55.928 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.928 -07 000000431 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:35:55.938 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.938 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.938 -07 000000576 INF: FPGA: Recv ZSGSRD 31142
17-03-17 20:35:55.948 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.948 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.948 -07 000000431 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:35:55.958 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.958 -07 000000415 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:35:55.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.968 -07 000000431 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:35:55.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.978 -07 000000415 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:35:55.988 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.988 -07 000000478 INF: FPGA: Recv ZSGSRD 31145
17-03-17 20:35:55.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:55.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:55.998 -07 000000626 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:35:56.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.008 -07 000000431 INF: FPGA: Recv ZSGSRD 31142
17-03-17 20:35:56.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.018 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:56.018 -07 000000415 INF: FPGA: Recv ZPIEZORD 26814
17-03-17 20:35:56.028 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.5 V.
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31143 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31142 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31141 (-139.6 uncal um), Max = 31150 (-139.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31143, posNoise = 7, negNoise = 2
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: After move to -0.140385, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: Settle wait time = 4556 ms, measure time = 106 ms (allowed 150 ms), total time = 4662 ms
17-03-17 20:35:56.028 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:56.078 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 20:35:56.078 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:56.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:56.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:56.078 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:56.078 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:56.078 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:56.078 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:56.078 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:56.078 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:35:56.108 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:35:56.108 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:35:56.108 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:35:56.108 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:35:56.118 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:35:56.118 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 37 ms.
17-03-17 20:35:56.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:35:56.168 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:35:56.368 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:35:56.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:35:56.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:35:56.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:35:56.408 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:35:56.408 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:35:56.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:35:56.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:35:56.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:56.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:35:56.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:35:56.508 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:56.508 -07 000000626 INF: Image SNR check: start
17-03-17 20:35:56.508 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:56.518 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:56.518 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:35:56.528 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=58.78]
17-03-17 20:35:56.528 -07 000000626 INF: Autofocus start
17-03-17 20:35:56.528 -07 000000626 INF: MeasureProfile start
17-03-17 20:35:56.538 -07 000000626 INF: MeasureProfile done
17-03-17 20:35:56.538 -07 000000626 INF: X=6  Z correction [um]=0.004914018
17-03-17 20:35:56.538 -07 000000626 INF: Autofocus finished
17-03-17 20:35:56.718 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:35:56.718 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:35:56.728 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140392590741996. ----------
17-03-17 20:35:56.728 -07 000000610 INF: Cycle	40	Tile	1	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:35:56.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29181, sync = True, waitForSettling = True)
17-03-17 20:35:56.728 -07 000000610 INF: Z Motor: Moving to -0.133582 mm, started at -0.140393 mm, distance = 6.81 um
17-03-17 20:35:56.728 -07 000000610 INF: FPGA: Xmit ZDACW 29181\n [Z Motor]
17-03-17 20:35:56.728 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:35:56.738 -07 000000610 INF: FPGA: 'ZDACW 29181' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:35:56.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:56.738 -07 000000576 INF: FPGA: Recv ZDACR 29181
17-03-17 20:35:56.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:35:56.798 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:35:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:35:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.898 -07 000000478 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:35:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:35:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.908 -07 000000501 INF: FPGA: Recv ZSGSRD 30083
17-03-17 20:35:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30081
17-03-17 20:35:56.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30083
17-03-17 20:35:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:35:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:35:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.958 -07 000000501 INF: FPGA: Recv ZSGSRD 30089
17-03-17 20:35:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.968 -07 000000431 INF: FPGA: Recv ZSGSRD 30078
17-03-17 20:35:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:35:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:56.988 -07 000000482 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:35:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:56.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:56.998 -07 000000501 INF: FPGA: Recv ZPIEZORD 25685
17-03-17 20:35:57.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:57.008 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.7 V.
17-03-17 20:35:57.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30082 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30082 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30078 (-132.8 uncal um), Max = 30089 (-132.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:35:57.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30082, posNoise = 7, negNoise = 4
17-03-17 20:35:57.008 -07 000000610 INF: Z Motor: After move to -0.133582, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:57.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:35:57.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:57.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:57.008 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:57.008 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:35:57.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:35:57.008 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:35:57.008 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:57.008 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:57.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:35:57.008 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:35:57.008 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:57.008 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:35:57.018 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:35:57.018 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:35:57.018 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:35:57.018 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:35:57.028 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:35:57.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:35:57.038 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:35:57.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:35:57.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:35:57.038 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 20:35:57.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29358 150\n [Camera]
17-03-17 20:35:57.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:35:57.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:35:57.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:35:57.668 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:57.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:35:57.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:35:57.668 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:57.668 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:57.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:35:57.668 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:57.668 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:35:57.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29358 802
17-03-17 20:35:57.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:35:58.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:35:58.038 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:35:58.038 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:58.048 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:35:58.048 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:35:58.048 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:58.048 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:58.048 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:35:58.048 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:35:58.058 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:35:58.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:35:58.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:35:58.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:35:58.308 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:35:58.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:35:58.308 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:35:58.318 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:35:58.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:35:58.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:35:58.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:35:58.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:35:58.398 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:35:58.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29358 150' command took 2 ms to send, 1342 ms to get response, and 1352 ms overall
17-03-17 20:35:58.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:35:58.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133576501659588. ------
17-03-17 20:35:58.398 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:35:58.398 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14012 mm
17-03-17 20:35:58.398 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:35:58.408 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:35:58.408 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 20:35:58.408 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30609, sync = True, waitForSettling = False)
17-03-17 20:35:58.408 -07 000000478 INF: Z Motor: Moving to -0.140119 mm, started at -0.133577 mm, distance = -6.54 um
17-03-17 20:35:58.408 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:35:58.408 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 20:35:58.408 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:58.408 -07 000000448 INF: FPGA: Recv YRDPOS 122699
17-03-17 20:35:58.418 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:58.418 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:58.418 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:35:58.418 -07 000000431 INF: Y Motor: Moving 1330 steps2
17-03-17 20:35:58.418 -07 000000478 INF: FPGA: Xmit ZDACW 30609\n [Z Motor]
17-03-17 20:35:58.418 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:35:58.428 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:35:58.428 -07 000000478 INF: FPGA: 'ZDACW 30609' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:58.438 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:35:58.448 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:35:58.448 -07 000000576 INF: FPGA: Recv ZDACR 30609
17-03-17 20:35:58.458 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:35:58.458 -07 000000478 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:35:58.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:35:58.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:35:58.698 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:58.698 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:58.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:35:58.708 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:35:58.708 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:35:58.708 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:35:58.708 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 20:35:58.708 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:35:58.718 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:35:58.718 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 286 ms to get response, and 314 ms overall
17-03-17 20:35:58.808 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:35:58.808 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:35:58.838 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:58.848 -07 000000627 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:35:58.848 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:35:58.848 -07 000000431 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:58.848 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:35:58.848 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 20:35:59.808 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:35:59.808 -07 000000501 INF: FPGA: Recv YRDPOS 124383
17-03-17 20:35:59.818 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:35:59.818 -07 000000431 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:35:59.838 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:35:59.838 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:35:59.838 -07 000000431 INF: Y Motor: Moved to 60.7339 after 1432 ms (table move)
17-03-17 20:35:59.838 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140119 mm (DAC = 30609)
17-03-17 20:35:59.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.848 -07 000000501 INF: FPGA: Recv ZSGSRD 31104
17-03-17 20:35:59.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:35:59.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.848 -07 000000431 INF: FPGA: Recv ZSGSRD 31101
17-03-17 20:35:59.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.858 -07 000000431 INF: FPGA: Recv ZSGSRD 31102
17-03-17 20:35:59.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.868 -07 000000501 INF: FPGA: Recv ZSGSRD 31110
17-03-17 20:35:59.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.878 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.878 -07 000000431 INF: FPGA: Recv ZSGSRD 31110
17-03-17 20:35:59.888 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.888 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.888 -07 000000501 INF: FPGA: Recv ZSGSRD 31110
17-03-17 20:35:59.898 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:35:59.898 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.898 -07 000000627 INF: FPGA: Recv ZSGSRD 31102
17-03-17 20:35:59.908 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.908 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.908 -07 000000569 INF: FPGA: Recv ZSGSRD 31100
17-03-17 20:35:59.918 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.918 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.918 -07 000000431 INF: FPGA: Recv ZSGSRD 31096
17-03-17 20:35:59.928 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.928 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:35:59.928 -07 000000627 INF: FPGA: Recv ZSGSRD 31102
17-03-17 20:35:59.938 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.938 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:35:59.938 -07 000000501 INF: FPGA: Recv ZPIEZORD 27052
17-03-17 20:35:59.948 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -8.9 V.
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31104 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31102 (-139.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31096 (-139.3 uncal um), Max = 31110 (-139.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31104, posNoise = 6, negNoise = 8
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: After move to -0.140119, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:35:59.948 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:35:59.998 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:35:59.998 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:35:59.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:35:59.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:35:59.998 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:35:59.998 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:35:59.998 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:35:59.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:35:59.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:35:59.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:00.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:00.008 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:00.018 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:36:00.018 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:36:00.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:00.058 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:00.258 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:00.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:00.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:00.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:36:00.298 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:00.298 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:00.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:36:00.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:36:00.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:00.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:00.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:36:00.448 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.015368,
17-03-17 20:36:00.498 -07 000000569 INF: Autofocus start
17-03-17 20:36:00.498 -07 000000569 INF: MeasureProfile start
17-03-17 20:36:00.498 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:00.498 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:00.508 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:00.508 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:00.508 -07 000000569 INF: MeasureProfile done
17-03-17 20:36:00.508 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:36:00.508 -07 000000569 INF: Autofocus finished
17-03-17 20:36:00.708 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:00.708 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:00.708 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.140142046468468. ----------
17-03-17 20:36:00.708 -07 000000610 INF: Cycle	40	Tile	2	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:00.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29116, sync = True, waitForSettling = True)
17-03-17 20:36:00.718 -07 000000610 INF: Z Motor: Moving to -0.133285 mm, started at -0.140142 mm, distance = 6.86 um
17-03-17 20:36:00.718 -07 000000610 INF: FPGA: Xmit ZDACW 29116\n [Z Motor]
17-03-17 20:36:00.718 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:36:00.728 -07 000000610 INF: FPGA: 'ZDACW 29116' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:00.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:00.728 -07 000000569 INF: FPGA: Recv ZDACR 29116
17-03-17 20:36:00.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:00.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.888 -07 000000551 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:36:00.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.898 -07 000000569 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:36:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.908 -07 000000626 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:36:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30037
17-03-17 20:36:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:36:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:36:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:36:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:36:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.968 -07 000000551 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:36:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:00.978 -07 000000569 INF: FPGA: Recv ZSGSRD 30038
17-03-17 20:36:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:00.988 -07 000000626 INF: FPGA: Recv ZPIEZORD 25663
17-03-17 20:36:00.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:00.998 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.6 V.
17-03-17 20:36:00.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30038 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30038 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30035 (-132.5 uncal um), Max = 30040 (-132.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:36:00.998 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30038, posNoise = 2, negNoise = 3
17-03-17 20:36:00.998 -07 000000610 INF: Z Motor: After move to -0.133285, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:00.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:36:00.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:00.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:00.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:00.998 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:00.998 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:00.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:00.998 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:00.998 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:00.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:00.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:00.998 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:00.998 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:01.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:01.008 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:01.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:36:01.008 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:01.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:36:01.018 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:36:01.018 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:36:01.018 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:36:01.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29293 150\n [Camera]
17-03-17 20:36:01.218 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:01.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:01.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:01.648 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:01.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:01.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:01.648 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:01.648 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:01.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:36:01.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:01.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:36:01.798 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:01.838 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29293 802
17-03-17 20:36:01.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:02.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:36:02.038 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:36:02.038 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:02.038 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:36:02.038 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:36:02.038 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:02.038 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:02.038 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:02.038 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:36:02.048 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:36:02.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:02.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:02.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:02.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:02.278 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:02.278 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:02.288 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:02.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:02.288 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:02.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:36:02.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:02.378 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:02.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29293 150' command took 2 ms to send, 1342 ms to get response, and 1351 ms overall
17-03-17 20:36:02.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:02.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133293836325351. ------
17-03-17 20:36:02.378 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:02.378 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.14001 mm
17-03-17 20:36:02.378 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:02.388 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:02.388 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:36:02.388 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:36:02.388 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 20:36:02.388 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:02.388 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30584, sync = True, waitForSettling = False)
17-03-17 20:36:02.388 -07 000000429 INF: Z Motor: Moving to -0.140005 mm, started at -0.133294 mm, distance = -6.71 um
17-03-17 20:36:02.388 -07 000000627 INF: FPGA: Recv YRDPOS 124384
17-03-17 20:36:02.398 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:02.398 -07 000000012 INF: Y Motor: Encoder = 124384 = motor step 97175.0 = 60.7344 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:02.398 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:02.398 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:02.398 -07 000000012 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:36:02.408 -07 000000429 INF: FPGA: Xmit ZDACW 30584\n [Z Motor]
17-03-17 20:36:02.408 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:36:02.418 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:02.418 -07 000000429 INF: FPGA: 'ZDACW 30584' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:36:02.428 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:02.428 -07 000000478 INF: FPGA: Recv ZDACR 30584
17-03-17 20:36:02.438 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:36:02.438 -07 000000429 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:36:02.598 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:02.598 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:36:02.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:36:02.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:36:02.688 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:02.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:36:02.688 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:36:02.688 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:02.688 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:02.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:02.688 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:36:02.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:36:02.788 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:36:02.788 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:36:02.828 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:02.828 -07 000000482 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:36:02.838 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:02.838 -07 000000012 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:02.838 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:36:02.838 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 20:36:03.788 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:03.788 -07 000000501 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:36:03.798 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:03.798 -07 000000012 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:03.818 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:03.818 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:03.818 -07 000000012 INF: Y Motor: Moved to 61.5649 after 1430 ms (table move)
17-03-17 20:36:03.818 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140005 mm (DAC = 30584)
17-03-17 20:36:03.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.818 -07 000000576 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:36:03.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:03.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.828 -07 000000431 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:36:03.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.838 -07 000000458 INF: FPGA: Recv ZSGSRD 31085
17-03-17 20:36:03.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.848 -07 000000433 INF: FPGA: Recv ZSGSRD 31087
17-03-17 20:36:03.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.858 -07 000000433 INF: FPGA: Recv ZSGSRD 31094
17-03-17 20:36:03.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.868 -07 000000551 INF: FPGA: Recv ZSGSRD 31090
17-03-17 20:36:03.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.878 -07 000000448 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:36:03.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.888 -07 000000433 INF: FPGA: Recv ZSGSRD 31079
17-03-17 20:36:03.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.898 -07 000000448 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:36:03.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.908 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:03.908 -07 000000551 INF: FPGA: Recv ZSGSRD 31088
17-03-17 20:36:03.918 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.918 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:03.918 -07 000000448 INF: FPGA: Recv ZPIEZORD 27105
17-03-17 20:36:03.928 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.8 V.
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31084 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31084 (-139.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31077 (-139.2 uncal um), Max = 31094 (-139.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31084, posNoise = 10, negNoise = 7
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: After move to -0.140005, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: Settle wait time = 1430 ms, measure time = 105 ms (allowed 150 ms), total time = 1535 ms
17-03-17 20:36:03.928 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:03.978 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:36:03.978 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:03.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:03.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:03.978 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:03.978 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:03.978 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:03.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:03.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:03.988 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:03.988 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:03.988 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:03.998 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:36:03.998 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:36:03.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:04.048 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:04.248 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:04.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:04.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:04.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:36:04.288 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:04.288 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:04.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:36:04.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:36:04.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:04.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:04.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:36:04.388 -07 000000551 INF: Autofocus start
17-03-17 20:36:04.388 -07 000000551 INF: MeasureProfile start
17-03-17 20:36:04.388 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:04.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:04.398 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:04.398 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:04.398 -07 000000551 INF: MeasureProfile done
17-03-17 20:36:04.398 -07 000000551 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 20:36:04.398 -07 000000551 INF: Autofocus finished
17-03-17 20:36:04.598 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:04.598 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:04.598 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.140013562225633. ----------
17-03-17 20:36:04.598 -07 000000610 INF: Cycle	40	Tile	3	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:04.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29045, sync = True, waitForSettling = True)
17-03-17 20:36:04.608 -07 000000610 INF: Z Motor: Moving to -0.132959 mm, started at -0.140014 mm, distance = 7.05 um
17-03-17 20:36:04.608 -07 000000610 INF: FPGA: Xmit ZDACW 29045\n [Z Motor]
17-03-17 20:36:04.608 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:36:04.618 -07 000000610 INF: FPGA: 'ZDACW 29045' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:04.618 -07 000000433 INF: FPGA: Recv ZDACR 29045
17-03-17 20:36:04.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29989
17-03-17 20:36:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29984
17-03-17 20:36:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29993
17-03-17 20:36:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.808 -07 000000551 INF: FPGA: Recv ZSGSRD 29986
17-03-17 20:36:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.818 -07 000000569 INF: FPGA: Recv ZSGSRD 29987
17-03-17 20:36:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.828 -07 000000551 INF: FPGA: Recv ZSGSRD 29989
17-03-17 20:36:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.838 -07 000000433 INF: FPGA: Recv ZSGSRD 29978
17-03-17 20:36:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.848 -07 000000458 INF: FPGA: Recv ZSGSRD 29991
17-03-17 20:36:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.858 -07 000000448 INF: FPGA: Recv ZSGSRD 29982
17-03-17 20:36:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:04.868 -07 000000458 INF: FPGA: Recv ZSGSRD 29985
17-03-17 20:36:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:04.878 -07 000000569 INF: FPGA: Recv ZPIEZORD 25657
17-03-17 20:36:04.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:04.888 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.5 V.
17-03-17 20:36:04.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29986 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29986 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29978 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:36:04.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29986, posNoise = 7, negNoise = 8
17-03-17 20:36:04.888 -07 000000610 INF: Z Motor: After move to -0.132959, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:04.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:36:04.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:04.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:04.888 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:04.888 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:04.888 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:04.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:04.888 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:04.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:04.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:04.888 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:04.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:04.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:04.898 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:04.898 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:04.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:04.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:04.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:36:04.898 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:36:04.898 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:36:04.898 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:04.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29222 150\n [Camera]
17-03-17 20:36:05.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:05.528 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:05.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:05.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:05.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:05.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:05.528 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:05.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:05.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:36:05.538 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:05.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:36:05.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29222 802
17-03-17 20:36:05.808 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.999021,
17-03-17 20:36:05.868 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:05.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:36:05.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:36:05.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:05.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:36:05.908 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:36:05.908 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:05.918 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:05.918 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:36:05.918 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:05.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:36:06.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:06.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:06.068 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:06.178 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:06.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:06.178 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:06.188 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:06.188 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:06.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:36:06.188 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:06.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:06.258 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:06.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29222 150' command took 2 ms to send, 1345 ms to get response, and 1351 ms overall
17-03-17 20:36:06.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:06.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.132959777293979. ------
17-03-17 20:36:06.268 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13907 mm
17-03-17 20:36:06.268 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:06.268 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:06.268 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:36:06.268 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 20:36:06.268 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:06.268 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30379, sync = True, waitForSettling = False)
17-03-17 20:36:06.268 -07 000000433 INF: Z Motor: Moving to -0.139066 mm, started at -0.132960 mm, distance = -6.11 um
17-03-17 20:36:06.278 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:06.278 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:06.278 -07 000000415 INF: FPGA: Recv YRDPOS 126085
17-03-17 20:36:06.288 -07 000000433 INF: FPGA: Xmit ZDACW 30379\n [Z Motor]
17-03-17 20:36:06.288 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:36:06.288 -07 000000482 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:06.288 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:06.288 -07 000000482 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:36:06.288 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:36:06.298 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:06.298 -07 000000433 INF: FPGA: 'ZDACW 30379' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:36:06.308 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:06.318 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:06.318 -07 000000415 INF: FPGA: Recv ZDACR 30379
17-03-17 20:36:06.328 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:06.328 -07 000000433 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:36:06.498 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:06.498 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:36:06.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:36:06.568 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:36:06.568 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:06.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:36:06.578 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:36:06.578 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:06.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:06.578 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:06.578 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 20:36:06.588 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:36:06.678 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:36:06.678 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:36:06.718 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:06.718 -07 000000429 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:36:06.728 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:06.728 -07 000000482 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:06.728 -07 000000482 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 20:36:06.728 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 20:36:06.798 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:07.678 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:07.678 -07 000000476 INF: FPGA: Recv YRDPOS 127788
17-03-17 20:36:07.688 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:07.688 -07 000000482 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:07.708 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:07.708 -07 000000482 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:36:07.708 -07 000000482 INF: Y Motor: Moved to 62.3965 after 1436 ms (table move)
17-03-17 20:36:07.708 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139066 mm (DAC = 30379)
17-03-17 20:36:07.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.708 -07 000000482 INF: FPGA: Recv ZSGSRD 30943
17-03-17 20:36:07.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:07.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.718 -07 000000482 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:36:07.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:36:07.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.738 -07 000000551 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:36:07.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.748 -07 000000429 INF: FPGA: Recv ZSGSRD 30946
17-03-17 20:36:07.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:36:07.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:36:07.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.778 -07 000000478 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:36:07.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:36:07.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:07.798 -07 000000448 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:36:07.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.808 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:07.808 -07 000000012 INF: FPGA: Recv ZPIEZORD 26933
17-03-17 20:36:07.818 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.8 V.
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30939 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30933 (-138.2 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30939, posNoise = 7, negNoise = 6
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: After move to -0.139066, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:36:07.818 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:07.868 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 20:36:07.868 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:07.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:07.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:07.868 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:07.868 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:07.868 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:07.868 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:07.868 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:07.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:07.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:07.878 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:07.878 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:07.878 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:36:07.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:07.928 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:08.128 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:08.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:08.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:08.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:36:08.168 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:08.168 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:08.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:36:08.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:36:08.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:08.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:08.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:36:08.368 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:08.368 -07 000000576 INF: Autofocus start
17-03-17 20:36:08.368 -07 000000576 INF: MeasureProfile start
17-03-17 20:36:08.368 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:08.378 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:08.378 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:08.378 -07 000000576 INF: MeasureProfile done
17-03-17 20:36:08.378 -07 000000576 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:36:08.378 -07 000000576 INF: Autofocus finished
17-03-17 20:36:08.578 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:08.578 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:08.578 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.139082051465077. ----------
17-03-17 20:36:08.578 -07 000000610 INF: Cycle	40	Tile	4	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:08.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-17 20:36:08.588 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.139082 mm, distance = 6.69 um
17-03-17 20:36:08.588 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-17 20:36:08.588 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:36:08.598 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:08.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:08.598 -07 000000415 INF: FPGA: Recv ZDACR 28920
17-03-17 20:36:08.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.758 -07 000000482 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:36:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.768 -07 000000415 INF: FPGA: Recv ZSGSRD 29904
17-03-17 20:36:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.778 -07 000000576 INF: FPGA: Recv ZSGSRD 29894
17-03-17 20:36:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.788 -07 000000576 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:36:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.798 -07 000000012 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:36:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:36:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:36:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.828 -07 000000448 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:36:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.838 -07 000000482 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:36:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:08.848 -07 000000482 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:36:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:08.858 -07 000000482 INF: FPGA: Recv ZPIEZORD 25565
17-03-17 20:36:08.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:08.868 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.5 V.
17-03-17 20:36:08.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29893 (-131.6 uncal um), Max = 29904 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:08.868 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 7, negNoise = 4
17-03-17 20:36:08.868 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:08.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:36:08.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:08.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:08.868 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:08.868 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:08.868 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:08.868 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:08.868 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:08.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:08.868 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:08.868 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:08.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:08.868 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:08.878 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:08.878 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:08.878 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:36:08.878 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:08.888 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:36:08.888 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:36:08.888 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:08.888 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:08.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29097 150\n [Camera]
17-03-17 20:36:09.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:09.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:09.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:09.508 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:09.508 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:09.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:09.508 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:09.508 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:09.508 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:36:09.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:09.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:36:09.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29097 802
17-03-17 20:36:09.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:36:09.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:36:09.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:36:09.888 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:09.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:36:09.888 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:36:09.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:09.888 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:09.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:36:09.998 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 112 ms.
17-03-17 20:36:10.008 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 20:36:10.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:36:10.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:36:10.048 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:10.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:36:10.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:36:10.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:10.058 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:10.058 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:36:10.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:10.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:10.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:10.238 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:10.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29097 150' command took 2 ms to send, 1344 ms to get response, and 1351 ms overall
17-03-17 20:36:10.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:10.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.132388022413362. ------
17-03-17 20:36:10.248 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:10.248 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13902 mm
17-03-17 20:36:10.248 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:10.248 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:10.248 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:36:10.248 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 20:36:10.248 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30370, sync = True, waitForSettling = False)
17-03-17 20:36:10.248 -07 000000482 INF: Z Motor: Moving to -0.139025 mm, started at -0.132388 mm, distance = -6.64 um
17-03-17 20:36:10.258 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:10.258 -07 000000482 INF: FPGA: Xmit ZDACW 30370\n [Z Motor]
17-03-17 20:36:10.258 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:36:10.268 -07 000000482 INF: FPGA: 'ZDACW 30370' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:36:10.268 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:10.278 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:10.278 -07 000000431 INF: FPGA: Recv YRDPOS 127788
17-03-17 20:36:10.288 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:10.288 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:36:10.288 -07 000000501 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:10.288 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:10.288 -07 000000501 INF: Y Motor: Moving 1338 steps-14
17-03-17 20:36:10.288 -07 000000448 INF: FPGA: Recv ZDACR 30370
17-03-17 20:36:10.298 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:10.298 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:10.298 -07 000000482 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:36:10.438 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:36:10.438 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:36:10.438 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:10.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:36:10.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:36:10.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:10.448 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:36:10.448 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:36:10.448 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:36:10.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:36:10.468 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:10.468 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:36:10.668 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:36:10.668 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:36:10.708 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:10.708 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:36:10.718 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:10.718 -07 000000501 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:10.718 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:36:10.718 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.836 mm, average velocity = 2.161 mm/sec
17-03-17 20:36:11.178 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.001704,
17-03-17 20:36:11.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:11.668 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:36:11.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:11.678 -07 000000501 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:11.698 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:11.698 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:11.698 -07 000000501 INF: Y Motor: Moved to 63.2251 after 1445 ms (table move)
17-03-17 20:36:11.698 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139025 mm (DAC = 30370)
17-03-17 20:36:11.698 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30923
17-03-17 20:36:11.708 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:36:11.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.708 -07 000000501 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:36:11.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.718 -07 000000431 INF: FPGA: Recv ZSGSRD 30928
17-03-17 20:36:11.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.728 -07 000000501 INF: FPGA: Recv ZSGSRD 30929
17-03-17 20:36:11.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:36:11.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.748 -07 000000501 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:36:11.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.758 -07 000000431 INF: FPGA: Recv ZSGSRD 30936
17-03-17 20:36:11.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30926
17-03-17 20:36:11.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.778 -07 000000429 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:36:11.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:11.788 -07 000000415 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:36:11.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:11.798 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:11.798 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:11.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:11.798 -07 000000429 INF: FPGA: Recv ZPIEZORD 26949
17-03-17 20:36:11.808 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.8 V.
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30930 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30928 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30923 (-138.2 uncal um), Max = 30938 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30930, posNoise = 8, negNoise = 7
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: After move to -0.139025, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:36:11.808 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:11.858 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 20:36:11.858 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:11.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:11.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:11.858 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:11.858 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:11.858 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:11.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:11.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:11.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:11.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:11.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:11.878 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 20:36:11.878 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:36:11.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:11.928 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:12.128 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:12.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:12.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:12.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:36:12.168 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:12.168 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:12.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 20:36:12.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:36:12.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:12.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:12.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:36:12.268 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:12.268 -07 000000482 INF: Autofocus start
17-03-17 20:36:12.268 -07 000000482 INF: MeasureProfile start
17-03-17 20:36:12.268 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:12.278 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:12.278 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:12.278 -07 000000482 INF: MeasureProfile done
17-03-17 20:36:12.278 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:36:12.278 -07 000000482 INF: Autofocus finished
17-03-17 20:36:12.478 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:12.478 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:12.478 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139024233555801. ----------
17-03-17 20:36:12.488 -07 000000610 INF: Cycle	40	Tile	5	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:12.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28894, sync = True, waitForSettling = True)
17-03-17 20:36:12.488 -07 000000610 INF: Z Motor: Moving to -0.132268 mm, started at -0.139024 mm, distance = 6.76 um
17-03-17 20:36:12.488 -07 000000610 INF: FPGA: Xmit ZDACW 28894\n [Z Motor]
17-03-17 20:36:12.488 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:36:12.498 -07 000000610 INF: FPGA: 'ZDACW 28894' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:12.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:12.498 -07 000000438 INF: FPGA: Recv ZDACR 28894
17-03-17 20:36:12.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:36:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.668 -07 000000448 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:36:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29883
17-03-17 20:36:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:36:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.698 -07 000000501 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:36:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.708 -07 000000482 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:36:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:36:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29880
17-03-17 20:36:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.738 -07 000000482 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:36:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:12.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:36:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:12.758 -07 000000501 INF: FPGA: Recv ZPIEZORD 25566
17-03-17 20:36:12.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:12.768 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.5 V.
17-03-17 20:36:12.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29879 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29879 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29876 (-131.5 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:36:12.768 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29879, posNoise = 4, negNoise = 3
17-03-17 20:36:12.768 -07 000000610 INF: Z Motor: After move to -0.132268, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:12.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:36:12.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:12.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:12.768 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:12.768 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:12.768 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:12.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:12.768 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:12.768 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:12.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:12.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:12.768 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:12.768 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:12.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:12.778 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:12.778 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:12.778 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:12.788 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:36:12.788 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:36:12.788 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:12.788 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:36:12.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29071 150\n [Camera]
17-03-17 20:36:12.988 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:13.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:13.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:13.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:13.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:13.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:13.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:13.408 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:13.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) start.
17-03-17 20:36:13.418 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:13.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:36:13.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29071 802
17-03-17 20:36:13.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:36:13.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:36:13.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:36:13.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:13.788 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:13.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1080193296, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:36:13.788 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:36:13.788 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:13.798 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:13.798 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:36:13.798 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:36:13.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:36:13.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:36:13.948 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:13.948 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:13.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:36:13.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:36:13.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:36:13.958 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:13.958 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:13.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:36:14.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:14.138 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:14.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29071 150' command took 2 ms to send, 1346 ms to get response, and 1351 ms overall
17-03-17 20:36:14.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:14.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132272386594811. ------
17-03-17 20:36:14.148 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:14.148 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13875 mm
17-03-17 20:36:14.148 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:14.148 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:36:14.148 -07 000000482 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 20:36:14.148 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:14.148 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30310, sync = True, waitForSettling = False)
17-03-17 20:36:14.148 -07 000000458 INF: Z Motor: Moving to -0.138750 mm, started at -0.132272 mm, distance = -6.48 um
17-03-17 20:36:14.158 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:14.158 -07 000000458 INF: FPGA: Xmit ZDACW 30310\n [Z Motor]
17-03-17 20:36:14.158 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:36:14.168 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:14.168 -07 000000458 INF: FPGA: 'ZDACW 30310' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:36:14.168 -07 000000478 INF: FPGA: Recv YRDPOS 129485
17-03-17 20:36:14.178 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:14.178 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:36:14.178 -07 000000482 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:14.178 -07 000000482 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:14.178 -07 000000482 INF: Y Motor: Moving 1340 steps-15
17-03-17 20:36:14.188 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:14.188 -07 000000438 INF: FPGA: Recv ZDACR 30310
17-03-17 20:36:14.198 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:14.198 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:14.198 -07 000000458 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:36:14.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:36:14.338 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:36:14.338 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:14.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:36:14.338 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:36:14.338 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:14.338 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:14.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:36:14.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:14.348 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:36:14.378 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:14.378 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:36:14.568 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:36:14.568 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:36:14.608 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:14.608 -07 000000438 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:36:14.618 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:14.618 -07 000000482 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:14.618 -07 000000482 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 20:36:14.618 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 20:36:15.568 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:15.568 -07 000000448 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:36:15.578 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:15.578 -07 000000482 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:15.588 -07 000000482 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:15.588 -07 000000482 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:15.588 -07 000000482 INF: Y Motor: Moved to 64.0576 after 1443 ms (table move)
17-03-17 20:36:15.598 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138750 mm (DAC = 30310)
17-03-17 20:36:15.598 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.598 -07 000000415 INF: FPGA: Recv ZSGSRD 30886
17-03-17 20:36:15.608 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:15.608 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.608 -07 000000431 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:36:15.618 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.618 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.618 -07 000000482 INF: FPGA: Recv ZSGSRD 30891
17-03-17 20:36:15.628 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.628 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.628 -07 000000448 INF: FPGA: Recv ZSGSRD 30889
17-03-17 20:36:15.638 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:15.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.638 -07 000000429 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:36:15.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30884
17-03-17 20:36:15.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:36:15.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30883
17-03-17 20:36:15.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30885
17-03-17 20:36:15.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:15.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30887
17-03-17 20:36:15.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.698 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:15.698 -07 000000429 INF: FPGA: Recv ZPIEZORD 26904
17-03-17 20:36:15.708 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -8.8 V.
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30887 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30887 (-137.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30883 (-137.9 uncal um), Max = 30892 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30887, posNoise = 5, negNoise = 4
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: After move to -0.138750, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:36:15.708 -07 000000551 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:15.758 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:36:15.758 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:15.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:15.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:15.758 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:15.758 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:15.758 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:15.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:15.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:36:15.758 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:15.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:15.768 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:15.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:36:15.778 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 20:36:15.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:15.828 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:16.028 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:16.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:16.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:16.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1115746688, 0x0, 559484976) start.
17-03-17 20:36:16.068 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:16.068 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:16.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:36:16.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1115746688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:36:16.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:16.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:16.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:36:16.178 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:16.178 -07 000000415 INF: Autofocus start
17-03-17 20:36:16.178 -07 000000415 INF: MeasureProfile start
17-03-17 20:36:16.188 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:16.188 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:36:16.188 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:16.198 -07 000000415 INF: MeasureProfile done
17-03-17 20:36:16.198 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:36:16.198 -07 000000415 INF: Autofocus finished
17-03-17 20:36:16.388 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:16.388 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:36:16.388 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138747992433706. ----------
17-03-17 20:36:16.398 -07 000000610 INF: Cycle	40	Tile	6	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:16.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28835, sync = True, waitForSettling = True)
17-03-17 20:36:16.398 -07 000000610 INF: Z Motor: Moving to -0.131998 mm, started at -0.138748 mm, distance = 6.75 um
17-03-17 20:36:16.398 -07 000000610 INF: FPGA: Xmit ZDACW 28835\n [Z Motor]
17-03-17 20:36:16.398 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:36:16.408 -07 000000610 INF: FPGA: 'ZDACW 28835' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:36:16.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:16.408 -07 000000415 INF: FPGA: Recv ZDACR 28835
17-03-17 20:36:16.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:16.548 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.997626,
17-03-17 20:36:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29841
17-03-17 20:36:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:16.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.598 -07 000000415 INF: FPGA: Recv ZSGSRD 29835
17-03-17 20:36:16.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:16.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29835
17-03-17 20:36:16.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29837
17-03-17 20:36:16.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29838
17-03-17 20:36:16.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.638 -07 000000458 INF: FPGA: Recv ZSGSRD 29841
17-03-17 20:36:16.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29834
17-03-17 20:36:16.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.658 -07 000000458 INF: FPGA: Recv ZSGSRD 29835
17-03-17 20:36:16.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29840
17-03-17 20:36:16.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:16.678 -07 000000458 INF: FPGA: Recv ZSGSRD 29841
17-03-17 20:36:16.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:16.688 -07 000000458 INF: FPGA: Recv ZPIEZORD 25536
17-03-17 20:36:16.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:16.698 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.4 V.
17-03-17 20:36:16.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29838 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29838 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29834 (-131.2 uncal um), Max = 29841 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:16.698 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29838, posNoise = 3, negNoise = 4
17-03-17 20:36:16.698 -07 000000610 INF: Z Motor: After move to -0.131998, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:16.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 294 ms)
17-03-17 20:36:16.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:16.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:16.698 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:16.698 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:16.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:16.698 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:16.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:16.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:16.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:16.698 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:16.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:16.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:16.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:36:16.708 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:16.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:16.708 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:16.718 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:36:16.718 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:36:16.718 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:36:16.718 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:16.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 29011 150\n [Camera]
17-03-17 20:36:16.798 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:16.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:16.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:17.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:17.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:17.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:17.338 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:17.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:36:17.338 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:17.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:17.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:17.448 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:17.448 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:36:17.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29011 802
17-03-17 20:36:17.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:17.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:36:17.718 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:36:17.718 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:17.718 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:36:17.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:36:17.828 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:36:17.828 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:36:17.828 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:17.828 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:17.838 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 20:36:17.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:17.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:17.878 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:17.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:17.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:17.878 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:17.888 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:17.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:36:17.888 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:17.888 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:36:18.068 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:18.068 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:18.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 29011 150' command took 2 ms to send, 1345 ms to get response, and 1351 ms overall
17-03-17 20:36:18.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:18.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132008993896998. ------
17-03-17 20:36:18.078 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:18.078 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13861 mm
17-03-17 20:36:18.078 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:18.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:36:18.078 -07 000000438 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 20:36:18.088 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:18.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:36:18.278 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:36:18.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:18.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:36:18.278 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:36:18.278 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:18.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:18.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:18.278 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:36:18.288 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:36:18.288 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:18.288 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 20:36:18.288 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 216 ms overall
17-03-17 20:36:18.288 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 197 ms to get response, and 211 ms overall
17-03-17 20:36:18.288 -07 000000438 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:18.288 -07 000000438 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:18.288 -07 000000438 INF: Y Motor: Moving 1336 steps-10
17-03-17 20:36:18.288 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30280, sync = True, waitForSettling = False)
17-03-17 20:36:18.288 -07 000000429 INF: Z Motor: Moving to -0.138613 mm, started at -0.132009 mm, distance = -6.60 um
17-03-17 20:36:18.288 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:18.298 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:18.308 -07 000000429 INF: FPGA: Xmit ZDACW 30280\n [Z Motor]
17-03-17 20:36:18.308 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:36:18.318 -07 000000429 INF: FPGA: 'ZDACW 30280' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:36:18.318 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:18.318 -07 000000433 INF: FPGA: Recv ZDACR 30280
17-03-17 20:36:18.328 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:18.328 -07 000000429 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 20:36:18.498 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:18.498 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 202 ms to get response, and 203 ms overall
17-03-17 20:36:18.668 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:36:18.668 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 20:36:18.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:18.708 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:36:18.718 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:18.718 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:18.718 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:36:18.718 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.835 mm, average velocity = 2.203 mm/sec
17-03-17 20:36:19.668 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:19.668 -07 000000415 INF: FPGA: Recv YRDPOS 132874
17-03-17 20:36:19.678 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:19.678 -07 000000438 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:19.698 -07 000000438 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:19.698 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:36:19.698 -07 000000438 INF: Y Motor: Moved to 64.8799 after 1617 ms (table move)
17-03-17 20:36:19.698 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138613 mm (DAC = 30280)
17-03-17 20:36:19.698 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30873
17-03-17 20:36:19.708 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:36:19.708 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.708 -07 000000429 INF: FPGA: Recv ZSGSRD 30870
17-03-17 20:36:19.718 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.718 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30870
17-03-17 20:36:19.728 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.728 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30862
17-03-17 20:36:19.738 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.738 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30878
17-03-17 20:36:19.748 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.748 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30863
17-03-17 20:36:19.758 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.758 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30869
17-03-17 20:36:19.768 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.768 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30868
17-03-17 20:36:19.778 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.778 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.778 -07 000000626 INF: FPGA: Recv ZSGSRD 30859
17-03-17 20:36:19.788 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.788 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:19.788 -07 000000476 INF: FPGA: Recv ZSGSRD 30869
17-03-17 20:36:19.798 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.798 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:19.798 -07 000000429 INF: FPGA: Recv ZPIEZORD 26939
17-03-17 20:36:19.808 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -8.7 V.
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30868 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30869 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30859 (-137.8 uncal um), Max = 30878 (-137.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30868, posNoise = 10, negNoise = 9
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: After move to -0.138613, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: Settle wait time = 1408 ms, measure time = 104 ms (allowed 150 ms), total time = 1512 ms
17-03-17 20:36:19.808 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:19.858 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1779 ms
17-03-17 20:36:19.858 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:19.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:19.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:19.868 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:19.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:19.868 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:19.868 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:19.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:19.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:19.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:19.868 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:19.878 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:19.878 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:36:19.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:19.928 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:20.118 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:20.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:20.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:20.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:36:20.158 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:20.168 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:20.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:36:20.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:36:20.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:20.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:20.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:36:20.268 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:20.268 -07 000000458 INF: Autofocus start
17-03-17 20:36:20.268 -07 000000458 INF: MeasureProfile start
17-03-17 20:36:20.378 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:20.378 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 20:36:20.378 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:20.398 -07 000000458 INF: MeasureProfile done
17-03-17 20:36:20.398 -07 000000458 INF: X=3  Z correction [um]=-0.009517147
17-03-17 20:36:20.398 -07 000000458 INF: Autofocus finished
17-03-17 20:36:20.588 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:20.588 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 20:36:20.588 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138625932403012. ----------
17-03-17 20:36:20.588 -07 000000610 INF: Cycle	40	Tile	7	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:20.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 20:36:20.598 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.138626 mm, distance = 6.83 um
17-03-17 20:36:20.598 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 20:36:20.598 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:36:20.608 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:20.608 -07 000000415 INF: FPGA: Recv ZDACR 28790
17-03-17 20:36:20.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29814
17-03-17 20:36:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.778 -07 000000431 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:36:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.788 -07 000000626 INF: FPGA: Recv ZSGSRD 29799
17-03-17 20:36:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29809
17-03-17 20:36:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:36:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.818 -07 000000431 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:36:20.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.828 -07 000000501 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:36:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.838 -07 000000482 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:36:20.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.848 -07 000000458 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:36:20.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:20.858 -07 000000476 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:36:20.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:20.868 -07 000000433 INF: FPGA: Recv ZPIEZORD 25502
17-03-17 20:36:20.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:20.878 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.5 V.
17-03-17 20:36:20.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29807 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29799 (-131.0 uncal um), Max = 29814 (-131.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:36:20.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29807, posNoise = 7, negNoise = 8
17-03-17 20:36:20.878 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:20.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:36:20.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:20.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:20.878 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:20.878 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:20.878 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:20.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:20.878 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:20.878 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:20.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:36:20.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:20.878 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:20.878 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:20.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:36:20.888 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:20.888 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:20.888 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:20.898 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:36:20.898 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:36:20.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:20.898 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:20.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28967 150\n [Camera]
17-03-17 20:36:21.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:21.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:21.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:21.518 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:21.518 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:21.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:21.518 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:21.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:21.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 20:36:21.518 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:21.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:21.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28967 802
17-03-17 20:36:21.798 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:21.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 955
17-03-17 20:36:21.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:36:21.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:36:21.898 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:21.898 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:21.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:36:21.908 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:36:21.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:21.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:21.908 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:36:21.908 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:36:21.918 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.997626,
17-03-17 20:36:22.058 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:36:22.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:36:22.058 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:22.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:36:22.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:36:22.058 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:22.068 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:22.068 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:36:22.068 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:22.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1109135064, 0x0, 418435064) start.
17-03-17 20:36:22.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:36:22.248 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:22.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28967 150' command took 2 ms to send, 1347 ms to get response, and 1355 ms overall
17-03-17 20:36:22.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:22.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.131809843320604. ------
17-03-17 20:36:22.258 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13835 mm
17-03-17 20:36:22.258 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:22.258 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:22.258 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:36:22.258 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 20:36:22.268 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:22.468 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:36:22.468 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:36:22.468 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:22.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1109135064, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:36:22.468 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:36:22.468 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:22.478 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:22.478 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:36:22.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:22.478 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:36:22.488 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30223, sync = True, waitForSettling = False)
17-03-17 20:36:22.488 -07 000000482 INF: Z Motor: Moving to -0.138352 mm, started at -0.131810 mm, distance = -6.54 um
17-03-17 20:36:22.488 -07 000000482 INF: FPGA: Xmit ZDACW 30223\n [Z Motor]
17-03-17 20:36:22.488 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:22.488 -07 000000012 INF: FPGA: Recv YRDPOS 132874
17-03-17 20:36:22.488 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:36:22.488 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 232 ms overall
17-03-17 20:36:22.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 230 ms overall
17-03-17 20:36:22.488 -07 000000438 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:22.488 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:22.488 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:36:22.498 -07 000000482 INF: FPGA: 'ZDACW 30223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:22.498 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:22.508 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:22.518 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:22.518 -07 000000012 INF: FPGA: Recv ZDACR 30223
17-03-17 20:36:22.528 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:22.528 -07 000000482 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:36:22.698 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:22.698 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-17 20:36:22.878 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:36:22.878 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 20:36:22.918 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:22.918 -07 000000012 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:36:22.928 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:22.928 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:22.928 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:36:22.928 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.166 mm/sec
17-03-17 20:36:23.878 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:23.878 -07 000000012 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:36:23.888 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:23.888 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:23.908 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:23.908 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:23.908 -07 000000438 INF: Y Motor: Moved to 65.7148 after 1644 ms (table move)
17-03-17 20:36:23.908 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138352 mm (DAC = 30223)
17-03-17 20:36:23.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.908 -07 000000012 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:36:23.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:23.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30826
17-03-17 20:36:23.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30821
17-03-17 20:36:23.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:36:23.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:36:23.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.958 -07 000000482 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:36:23.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30830
17-03-17 20:36:23.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30825
17-03-17 20:36:23.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:36:23.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:23.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:23.998 -07 000000482 INF: FPGA: Recv ZSGSRD 30821
17-03-17 20:36:24.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:24.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:24.008 -07 000000482 INF: FPGA: Recv ZPIEZORD 26820
17-03-17 20:36:24.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.8 V.
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30826 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30821 (-137.5 uncal um), Max = 30831 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30826, posNoise = 5, negNoise = 5
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: After move to -0.138352, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 20:36:24.018 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:24.068 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-17 20:36:24.068 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:24.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:24.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:24.068 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:24.068 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:24.068 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:24.068 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:24.068 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:24.068 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:24.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:24.078 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:24.078 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:36:24.078 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:36:24.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:24.128 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:24.328 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:24.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:24.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:24.438 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:24.438 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:24.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 342 ms to get response, and 350 ms overall
17-03-17 20:36:24.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:36:24.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:36:24.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:24.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:24.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 222 ms.
17-03-17 20:36:24.638 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:24.638 -07 000000482 INF: Autofocus start
17-03-17 20:36:24.638 -07 000000482 INF: MeasureProfile start
17-03-17 20:36:24.638 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:24.648 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:24.648 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:24.648 -07 000000482 INF: MeasureProfile done
17-03-17 20:36:24.648 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:36:24.648 -07 000000482 INF: Autofocus finished
17-03-17 20:36:24.848 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:24.848 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 20:36:24.858 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138356115493058. ----------
17-03-17 20:36:24.858 -07 000000610 INF: Cycle	40	Tile	8	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:24.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28747, sync = True, waitForSettling = True)
17-03-17 20:36:24.858 -07 000000610 INF: Z Motor: Moving to -0.131595 mm, started at -0.138356 mm, distance = 6.76 um
17-03-17 20:36:24.858 -07 000000610 INF: FPGA: Xmit ZDACW 28747\n [Z Motor]
17-03-17 20:36:24.858 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:36:24.868 -07 000000610 INF: FPGA: 'ZDACW 28747' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:24.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:24.868 -07 000000433 INF: FPGA: Recv ZDACR 28747
17-03-17 20:36:24.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:24.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29779
17-03-17 20:36:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.038 -07 000000433 INF: FPGA: Recv ZSGSRD 29772
17-03-17 20:36:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29776
17-03-17 20:36:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.058 -07 000000433 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:36:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.068 -07 000000012 INF: FPGA: Recv ZSGSRD 29771
17-03-17 20:36:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.078 -07 000000012 INF: FPGA: Recv ZSGSRD 29776
17-03-17 20:36:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29777
17-03-17 20:36:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.098 -07 000000012 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:36:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29771
17-03-17 20:36:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:25.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29770
17-03-17 20:36:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:25.128 -07 000000458 INF: FPGA: Recv ZPIEZORD 25487
17-03-17 20:36:25.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:25.138 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.4 V.
17-03-17 20:36:25.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29774 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29779 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:25.138 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29774, posNoise = 5, negNoise = 4
17-03-17 20:36:25.138 -07 000000610 INF: Z Motor: After move to -0.131595, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:25.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:36:25.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:25.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:25.138 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:25.138 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:25.138 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:25.138 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:25.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:25.138 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:25.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:25.138 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:25.138 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:25.138 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:25.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:25.148 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:25.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:25.148 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:25.158 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:36:25.158 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:36:25.158 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:36:25.158 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:36:25.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28924 150\n [Camera]
17-03-17 20:36:25.368 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:25.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:25.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:25.778 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:25.788 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:25.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:25.788 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:25.788 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:25.788 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 20:36:25.788 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:25.788 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:25.978 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28924 802
17-03-17 20:36:26.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:26.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:36:26.178 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:36:26.178 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:26.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:36:26.188 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:36:26.188 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:26.188 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:26.188 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:36:26.188 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:26.198 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:36:26.328 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:26.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:26.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:26.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:26.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:26.328 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:26.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:26.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:36:26.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:26.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1109003936, 0x0, 418435064) start.
17-03-17 20:36:26.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:26.518 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:26.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28924 150' command took 2 ms to send, 1342 ms to get response, and 1352 ms overall
17-03-17 20:36:26.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:26.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131597844319926. ------
17-03-17 20:36:26.518 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:26.518 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13794 mm
17-03-17 20:36:26.518 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:26.528 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:36:26.528 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 20:36:26.528 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:26.528 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:36:26.528 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:26.528 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30133, sync = True, waitForSettling = False)
17-03-17 20:36:26.528 -07 000000433 INF: Z Motor: Moving to -0.137940 mm, started at -0.131598 mm, distance = -6.34 um
17-03-17 20:36:26.528 -07 000000482 INF: FPGA: Recv YRDPOS 134585
17-03-17 20:36:26.538 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:26.538 -07 000000433 INF: FPGA: Xmit ZDACW 30133\n [Z Motor]
17-03-17 20:36:26.538 -07 000000627 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:26.538 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:36:26.538 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:26.538 -07 000000627 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:36:26.548 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:26.548 -07 000000433 INF: FPGA: 'ZDACW 30133' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:36:26.558 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:26.568 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:26.568 -07 000000458 INF: FPGA: Recv ZDACR 30133
17-03-17 20:36:26.578 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:26.578 -07 000000433 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:36:26.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:36:26.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:36:26.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:26.738 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1109003936, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:36:26.738 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:36:26.738 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:26.738 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:26.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:36:26.738 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:26.748 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:26.748 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 20:36:26.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:36:26.798 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:26.928 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:36:26.928 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-17 20:36:26.988 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:26.988 -07 000000458 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:36:26.998 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:36:26.998 -07 000000627 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:26.998 -07 000000627 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:36:26.998 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 20:36:27.298 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.99219,
17-03-17 20:36:27.948 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:27.948 -07 000000458 INF: FPGA: Recv YRDPOS 136274
17-03-17 20:36:27.958 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:27.958 -07 000000627 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:27.978 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:27.978 -07 000000627 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:27.978 -07 000000627 INF: Y Motor: Moved to 66.5400 after 1452 ms (table move)
17-03-17 20:36:27.978 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137940 mm (DAC = 30133)
17-03-17 20:36:27.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:27.988 -07 000000433 INF: FPGA: Recv ZSGSRD 30761
17-03-17 20:36:27.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:36:27.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:27.988 -07 000000458 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:36:27.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:27.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:27.998 -07 000000433 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:36:28.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.008 -07 000000429 INF: FPGA: Recv ZSGSRD 30754
17-03-17 20:36:28.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.018 -07 000000433 INF: FPGA: Recv ZSGSRD 30756
17-03-17 20:36:28.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30761
17-03-17 20:36:28.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.038 -07 000000433 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:36:28.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.048 -07 000000429 INF: FPGA: Recv ZSGSRD 30768
17-03-17 20:36:28.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.058 -07 000000458 INF: FPGA: Recv ZSGSRD 30755
17-03-17 20:36:28.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:36:28.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.078 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:28.078 -07 000000429 INF: FPGA: Recv ZPIEZORD 26777
17-03-17 20:36:28.088 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.8 V.
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30762 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30762 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30754 (-137.1 uncal um), Max = 30768 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30762, posNoise = 6, negNoise = 8
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: After move to -0.137940, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: Settle wait time = 1455 ms, measure time = 102 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:36:28.088 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:28.138 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 20:36:28.138 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:28.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:28.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:28.138 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:28.138 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:28.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:28.138 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:28.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:28.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:28.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:28.148 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:28.148 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:36:28.148 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:36:28.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:28.198 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:28.398 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:28.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:28.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:28.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1416316576, 0x0, 559484976) start.
17-03-17 20:36:28.438 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:28.438 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:28.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:36:28.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1416316576, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:36:28.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:28.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:28.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:36:28.538 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:28.538 -07 000000433 INF: Autofocus start
17-03-17 20:36:28.538 -07 000000433 INF: MeasureProfile start
17-03-17 20:36:28.538 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:28.548 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:28.548 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:28.548 -07 000000433 INF: MeasureProfile done
17-03-17 20:36:28.548 -07 000000433 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:36:28.548 -07 000000433 INF: Autofocus finished
17-03-17 20:36:28.748 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:28.748 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:36:28.748 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137944965915986. ----------
17-03-17 20:36:28.758 -07 000000610 INF: Cycle	40	Tile	9	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:28.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28674, sync = True, waitForSettling = True)
17-03-17 20:36:28.758 -07 000000610 INF: Z Motor: Moving to -0.131261 mm, started at -0.137945 mm, distance = 6.68 um
17-03-17 20:36:28.758 -07 000000610 INF: FPGA: Xmit ZDACW 28674\n [Z Motor]
17-03-17 20:36:28.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:36:28.768 -07 000000610 INF: FPGA: 'ZDACW 28674' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:28.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:28.768 -07 000000569 INF: FPGA: Recv ZDACR 28674
17-03-17 20:36:28.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.928 -07 000000569 INF: FPGA: Recv ZSGSRD 29723
17-03-17 20:36:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.938 -07 000000626 INF: FPGA: Recv ZSGSRD 29710
17-03-17 20:36:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.948 -07 000000448 INF: FPGA: Recv ZSGSRD 29730
17-03-17 20:36:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.958 -07 000000569 INF: FPGA: Recv ZSGSRD 29715
17-03-17 20:36:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29716
17-03-17 20:36:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.978 -07 000000431 INF: FPGA: Recv ZSGSRD 29728
17-03-17 20:36:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.988 -07 000000433 INF: FPGA: Recv ZSGSRD 29718
17-03-17 20:36:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:28.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29724
17-03-17 20:36:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:29.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29724
17-03-17 20:36:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:29.018 -07 000000458 INF: FPGA: Recv ZSGSRD 29721
17-03-17 20:36:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:29.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:29.028 -07 000000433 INF: FPGA: Recv ZPIEZORD 25434
17-03-17 20:36:29.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:29.038 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.4 V.
17-03-17 20:36:29.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29721 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29722 (-130.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29710 (-130.4 uncal um), Max = 29730 (-130.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:36:29.038 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29721, posNoise = 9, negNoise = 11
17-03-17 20:36:29.038 -07 000000610 INF: Z Motor: After move to -0.131261, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:29.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:36:29.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:29.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:29.038 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:29.038 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:29.038 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:29.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:29.038 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:29.038 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:29.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:29.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:29.038 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:29.038 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:29.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:29.048 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:29.048 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:29.048 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:29.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:36:29.058 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:29.058 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:36:29.058 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:36:29.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28851 150\n [Camera]
17-03-17 20:36:29.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:36:29.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:29.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:29.678 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:29.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:29.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:29.678 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:29.678 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:29.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:36:29.678 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:29.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1435397960, 0x0, 391868352) start.
17-03-17 20:36:29.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28851 802
17-03-17 20:36:30.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:30.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1435397960, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:36:30.078 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:36:30.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:30.078 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:36:30.078 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:36:30.078 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:30.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:30.078 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:36:30.088 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:30.088 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:36:30.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:30.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:30.218 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:30.328 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:30.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:30.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:30.328 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:30.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:30.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:36:30.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:30.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:30.408 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:30.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28851 150' command took 2 ms to send, 1347 ms to get response, and 1352 ms overall
17-03-17 20:36:30.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:30.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131257361076412. ------
17-03-17 20:36:30.418 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:30.418 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13810 mm
17-03-17 20:36:30.418 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:30.418 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:36:30.418 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 20:36:30.418 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30167, sync = True, waitForSettling = False)
17-03-17 20:36:30.418 -07 000000569 INF: Z Motor: Moving to -0.138096 mm, started at -0.131257 mm, distance = -6.84 um
17-03-17 20:36:30.418 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:30.428 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:30.428 -07 000000569 INF: FPGA: Xmit ZDACW 30167\n [Z Motor]
17-03-17 20:36:30.428 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:36:30.438 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:30.438 -07 000000569 INF: FPGA: 'ZDACW 30167' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:36:30.438 -07 000000448 INF: FPGA: Recv YRDPOS 136275
17-03-17 20:36:30.448 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:30.448 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:36:30.448 -07 000000431 INF: Y Motor: Encoder = 136275 = motor step 106464.8 = 66.5405 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:30.448 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:30.448 -07 000000431 INF: Y Motor: Moving 1347 steps-26
17-03-17 20:36:30.458 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:30.458 -07 000000626 INF: FPGA: Recv ZDACR 30167
17-03-17 20:36:30.468 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:30.468 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:30.468 -07 000000569 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:36:30.648 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:30.648 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:36:30.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:36:30.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:36:30.718 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:30.718 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:30.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:36:30.728 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:36:30.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:30.728 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:30.728 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 20:36:30.728 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:36:30.838 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:36:30.838 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:36:30.878 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:30.878 -07 000000551 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:36:30.888 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:30.888 -07 000000431 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:30.888 -07 000000431 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:36:30.888 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 20:36:31.798 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:31.838 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:31.838 -07 000000501 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:36:31.848 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:31.848 -07 000000431 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:31.868 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:31.868 -07 000000431 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:31.868 -07 000000431 INF: Y Motor: Moved to 67.3730 after 1448 ms (table move)
17-03-17 20:36:31.868 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138096 mm (DAC = 30167)
17-03-17 20:36:31.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.868 -07 000000415 INF: FPGA: Recv ZSGSRD 30793
17-03-17 20:36:31.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:36:31.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.878 -07 000000478 INF: FPGA: Recv ZSGSRD 30790
17-03-17 20:36:31.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.888 -07 000000501 INF: FPGA: Recv ZSGSRD 30778
17-03-17 20:36:31.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.898 -07 000000478 INF: FPGA: Recv ZSGSRD 30792
17-03-17 20:36:31.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.908 -07 000000501 INF: FPGA: Recv ZSGSRD 30787
17-03-17 20:36:31.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.918 -07 000000012 INF: FPGA: Recv ZSGSRD 30788
17-03-17 20:36:31.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.928 -07 000000433 INF: FPGA: Recv ZSGSRD 30795
17-03-17 20:36:31.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30787
17-03-17 20:36:31.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.948 -07 000000478 INF: FPGA: Recv ZSGSRD 30780
17-03-17 20:36:31.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:31.958 -07 000000415 INF: FPGA: Recv ZSGSRD 30784
17-03-17 20:36:31.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.968 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:31.968 -07 000000476 INF: FPGA: Recv ZPIEZORD 26840
17-03-17 20:36:31.978 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -8.7 V.
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30787 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30788 (-137.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30778 (-137.2 uncal um), Max = 30795 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30787, posNoise = 8, negNoise = 9
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: After move to -0.138096, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:36:31.978 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:32.028 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:36:32.028 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:32.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:32.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:32.028 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:32.028 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:32.028 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:32.028 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:32.028 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:32.028 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:32.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:32.038 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:32.038 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:32.038 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:36:32.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:32.098 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:32.298 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:32.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:32.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:32.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) start.
17-03-17 20:36:32.338 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:32.338 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:32.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 20:36:32.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1056706608, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:36:32.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:32.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:32.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:36:32.438 -07 000000626 INF: Autofocus start
17-03-17 20:36:32.438 -07 000000626 INF: MeasureProfile start
17-03-17 20:36:32.438 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:32.438 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:32.448 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:32.448 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:32.448 -07 000000626 INF: MeasureProfile done
17-03-17 20:36:32.448 -07 000000626 INF: X=-10  Z correction [um]=-0.05208117
17-03-17 20:36:32.448 -07 000000626 INF: Autofocus finished
17-03-17 20:36:32.648 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:32.648 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:32.648 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.13810557121953. ----------
17-03-17 20:36:32.648 -07 000000610 INF: Cycle	40	Tile	10	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:32.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28668, sync = True, waitForSettling = True)
17-03-17 20:36:32.658 -07 000000610 INF: Z Motor: Moving to -0.131234 mm, started at -0.138106 mm, distance = 6.87 um
17-03-17 20:36:32.668 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.978563,
17-03-17 20:36:32.678 -07 000000610 INF: FPGA: Xmit ZDACW 28668\n [Z Motor]
17-03-17 20:36:32.678 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:36:32.688 -07 000000610 INF: FPGA: 'ZDACW 28668' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:32.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:32.688 -07 000000476 INF: FPGA: Recv ZDACR 28668
17-03-17 20:36:32.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.848 -07 000000476 INF: FPGA: Recv ZSGSRD 29721
17-03-17 20:36:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.858 -07 000000476 INF: FPGA: Recv ZSGSRD 29710
17-03-17 20:36:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.868 -07 000000476 INF: FPGA: Recv ZSGSRD 29717
17-03-17 20:36:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.878 -07 000000626 INF: FPGA: Recv ZSGSRD 29719
17-03-17 20:36:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.888 -07 000000627 INF: FPGA: Recv ZSGSRD 29721
17-03-17 20:36:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.898 -07 000000476 INF: FPGA: Recv ZSGSRD 29717
17-03-17 20:36:32.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.908 -07 000000476 INF: FPGA: Recv ZSGSRD 29715
17-03-17 20:36:32.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29719
17-03-17 20:36:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29717
17-03-17 20:36:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:32.938 -07 000000476 INF: FPGA: Recv ZSGSRD 29719
17-03-17 20:36:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:32.948 -07 000000476 INF: FPGA: Recv ZPIEZORD 25446
17-03-17 20:36:32.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:32.958 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.4 V.
17-03-17 20:36:32.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29718 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29710 (-130.4 uncal um), Max = 29721 (-130.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:36:32.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29718, posNoise = 3, negNoise = 8
17-03-17 20:36:32.958 -07 000000610 INF: Z Motor: After move to -0.131234, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:32.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 20:36:32.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:32.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:32.958 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:32.958 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:32.958 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:32.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:32.958 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:32.958 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:32.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:32.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:32.958 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:32.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:32.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:32.968 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:32.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:36:32.968 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:32.978 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:36:32.978 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:36:32.978 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 20:36:32.978 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:36:32.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28845 150\n [Camera]
17-03-17 20:36:33.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:33.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:33.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:33.598 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:33.608 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:33.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:33.608 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:33.708 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:33.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) start.
17-03-17 20:36:33.718 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:33.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:36:33.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28845 802
17-03-17 20:36:33.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:34.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1075787992, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:36:34.098 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:36:34.098 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:34.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:36:34.098 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:36:34.098 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:34.098 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 20:36:34.098 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:34.108 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:34.118 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 20:36:34.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:34.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:34.148 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:34.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:34.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:34.148 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:34.148 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:34.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:36:34.158 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:34.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:36:34.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:34.338 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:34.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28845 150' command took 2 ms to send, 1343 ms to get response, and 1352 ms overall
17-03-17 20:36:34.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:34.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131238088439987. ------
17-03-17 20:36:34.338 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:34.338 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13771 mm
17-03-17 20:36:34.338 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:34.348 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:34.348 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:36:34.348 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:34.348 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:36:34.348 -07 000000429 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 20:36:34.348 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30082, sync = True, waitForSettling = False)
17-03-17 20:36:34.348 -07 000000569 INF: Z Motor: Moving to -0.137707 mm, started at -0.131238 mm, distance = -6.47 um
17-03-17 20:36:34.358 -07 000000569 INF: FPGA: Xmit ZDACW 30082\n [Z Motor]
17-03-17 20:36:34.358 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:36:34.368 -07 000000569 INF: FPGA: 'ZDACW 30082' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:36:34.368 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:34.368 -07 000000482 INF: FPGA: Recv YRDPOS 137980
17-03-17 20:36:34.378 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:36:34.378 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:34.378 -07 000000429 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:34.378 -07 000000429 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:34.378 -07 000000429 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:36:34.378 -07 000000458 INF: FPGA: Recv ZDACR 30082
17-03-17 20:36:34.388 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:36:34.388 -07 000000569 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:36:34.388 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:34.548 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:34.548 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:36:34.548 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:36:34.548 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:36:34.548 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:34.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:36:34.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:36:34.558 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:34.558 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:34.558 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:36:34.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:34.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:36:34.758 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:36:34.758 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:36:34.798 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:34.798 -07 000000415 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:36:34.808 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:34.808 -07 000000429 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:34.808 -07 000000429 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:36:34.808 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 20:36:35.758 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:35.758 -07 000000482 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:36:35.768 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:35.768 -07 000000429 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:35.788 -07 000000429 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:35.788 -07 000000429 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:35.788 -07 000000429 INF: Y Motor: Moved to 68.2061 after 1436 ms (table move)
17-03-17 20:36:35.788 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137707 mm (DAC = 30082)
17-03-17 20:36:35.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30730
17-03-17 20:36:35.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:35.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.798 -07 000000478 INF: FPGA: Recv ZSGSRD 30726
17-03-17 20:36:35.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30727
17-03-17 20:36:35.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.818 -07 000000476 INF: FPGA: Recv ZSGSRD 30731
17-03-17 20:36:35.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.828 -07 000000476 INF: FPGA: Recv ZSGSRD 30733
17-03-17 20:36:35.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.838 -07 000000476 INF: FPGA: Recv ZSGSRD 30724
17-03-17 20:36:35.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.848 -07 000000482 INF: FPGA: Recv ZSGSRD 30722
17-03-17 20:36:35.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30722
17-03-17 20:36:35.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.868 -07 000000476 INF: FPGA: Recv ZSGSRD 30725
17-03-17 20:36:35.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:35.878 -07 000000476 INF: FPGA: Recv ZSGSRD 30729
17-03-17 20:36:35.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.888 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:35.888 -07 000000476 INF: FPGA: Recv ZPIEZORD 26794
17-03-17 20:36:35.898 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -8.7 V.
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30727 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30733 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30727, posNoise = 6, negNoise = 5
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: After move to -0.137707, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:36:35.898 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:35.948 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:36:35.948 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:35.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:35.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:35.948 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:35.948 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:35.948 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:35.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:35.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:35.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:35.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:35.958 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:35.958 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:35.958 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:36:35.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:36.008 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:36.208 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:36.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:36.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:36.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:36:36.248 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:36.248 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:36.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:36:36.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:36:36.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:36.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:36.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:36:36.448 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:36.448 -07 000000626 INF: Autofocus start
17-03-17 20:36:36.448 -07 000000626 INF: MeasureProfile start
17-03-17 20:36:36.448 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:36.458 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:36.458 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:36.458 -07 000000626 INF: MeasureProfile done
17-03-17 20:36:36.458 -07 000000626 INF: X=-11  Z correction [um]=-0.05694899
17-03-17 20:36:36.458 -07 000000626 INF: Autofocus finished
17-03-17 20:36:36.658 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:36.658 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 20:36:36.668 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137720118491024. ----------
17-03-17 20:36:36.668 -07 000000610 INF: Cycle	40	Tile	11	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:36.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28582, sync = True, waitForSettling = True)
17-03-17 20:36:36.668 -07 000000610 INF: Z Motor: Moving to -0.130840 mm, started at -0.137720 mm, distance = 6.88 um
17-03-17 20:36:36.668 -07 000000610 INF: FPGA: Xmit ZDACW 28582\n [Z Motor]
17-03-17 20:36:36.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:36:36.678 -07 000000610 INF: FPGA: 'ZDACW 28582' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:36.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:36.678 -07 000000438 INF: FPGA: Recv ZDACR 28582
17-03-17 20:36:36.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:36.798 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:36.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29661
17-03-17 20:36:36.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:36.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.848 -07 000000501 INF: FPGA: Recv ZSGSRD 29657
17-03-17 20:36:36.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.858 -07 000000501 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:36:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.868 -07 000000476 INF: FPGA: Recv ZSGSRD 29654
17-03-17 20:36:36.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.878 -07 000000501 INF: FPGA: Recv ZSGSRD 29658
17-03-17 20:36:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.888 -07 000000429 INF: FPGA: Recv ZSGSRD 29656
17-03-17 20:36:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29656
17-03-17 20:36:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29661
17-03-17 20:36:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.918 -07 000000501 INF: FPGA: Recv ZSGSRD 29658
17-03-17 20:36:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:36.928 -07 000000438 INF: FPGA: Recv ZSGSRD 29659
17-03-17 20:36:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:36.938 -07 000000438 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 20:36:36.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:36.948 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.4 V.
17-03-17 20:36:36.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29658 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29658 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29654 (-130.0 uncal um), Max = 29661 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:36.948 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29658, posNoise = 3, negNoise = 4
17-03-17 20:36:36.948 -07 000000610 INF: Z Motor: After move to -0.130840, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:36.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:36:36.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:36.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:36.948 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:36.948 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:36.948 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:36.948 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:36.948 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:36.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:36.948 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:36.948 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:36.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:36.948 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:36.948 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:36.948 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:36.958 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:36:36.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:36.958 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:36:36.958 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:36:36.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:36.958 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:36.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28759 150\n [Camera]
17-03-17 20:36:37.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:37.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:37.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:37.588 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:37.588 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:37.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:36:37.588 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:37.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:37.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:37.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:37.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:36:37.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28759 802
17-03-17 20:36:37.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:37.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:36:37.968 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:36:37.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:37.978 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:37.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:36:37.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:36:37.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:37.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:37.978 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:36:37.988 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:36:38.048 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.003063,
17-03-17 20:36:38.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:38.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:38.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:38.128 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:38.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:36:38.128 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:38.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:38.128 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:38.128 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:38.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:36:38.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:38.318 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:38.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28759 150' command took 2 ms to send, 1346 ms to get response, and 1352 ms overall
17-03-17 20:36:38.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:38.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130852635711481. ------
17-03-17 20:36:38.328 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:38.328 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13752 mm
17-03-17 20:36:38.328 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:38.328 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30042, sync = True, waitForSettling = False)
17-03-17 20:36:38.328 -07 000000438 INF: Z Motor: Moving to -0.137523 mm, started at -0.130853 mm, distance = -6.67 um
17-03-17 20:36:38.328 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:38.328 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:36:38.328 -07 000000551 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 20:36:38.338 -07 000000438 INF: FPGA: Xmit ZDACW 30042\n [Z Motor]
17-03-17 20:36:38.338 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:38.338 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:36:38.348 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:38.348 -07 000000438 INF: FPGA: 'ZDACW 30042' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:36:38.348 -07 000000476 INF: FPGA: Recv YRDPOS 139686
17-03-17 20:36:38.358 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:38.358 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:36:38.358 -07 000000551 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:38.358 -07 000000551 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:38.358 -07 000000551 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:36:38.368 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:38.368 -07 000000476 INF: FPGA: Recv ZDACR 30042
17-03-17 20:36:38.378 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:38.378 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:38.378 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:36:38.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:36:38.508 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:36:38.508 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:38.508 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:38.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:36:38.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:36:38.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:38.518 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:38.518 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:36:38.518 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:36:38.558 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:38.558 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:36:38.758 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:36:38.758 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 20:36:38.798 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:38.798 -07 000000501 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:36:38.808 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:38.808 -07 000000551 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:38.808 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:36:38.808 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.837 mm, average velocity = 2.086 mm/sec
17-03-17 20:36:39.758 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:39.758 -07 000000431 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:36:39.768 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:39.768 -07 000000551 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:39.788 -07 000000551 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:39.788 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:39.788 -07 000000551 INF: Y Motor: Moved to 69.0283 after 1456 ms (table move)
17-03-17 20:36:39.788 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137523 mm (DAC = 30042)
17-03-17 20:36:39.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.798 -07 000000431 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:36:39.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:36:39.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.798 -07 000000482 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:36:39.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:36:39.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.818 -07 000000551 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:36:39.828 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.828 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.828 -07 000000501 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:36:39.838 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.838 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.838 -07 000000482 INF: FPGA: Recv ZSGSRD 30695
17-03-17 20:36:39.848 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.848 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.848 -07 000000415 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:36:39.858 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.858 -07 000000576 INF: FPGA: Recv ZSGSRD 30693
17-03-17 20:36:39.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:36:39.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:39.878 -07 000000476 INF: FPGA: Recv ZSGSRD 30700
17-03-17 20:36:39.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.888 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:39.888 -07 000000415 INF: FPGA: Recv ZPIEZORD 26710
17-03-17 20:36:39.898 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.8 V.
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30698 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30698 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30693 (-136.7 uncal um), Max = 30702 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30698, posNoise = 4, negNoise = 5
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: After move to -0.137523, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-17 20:36:39.898 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:39.948 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 20:36:39.948 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:39.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:39.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:39.948 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:39.948 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:39.948 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:39.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:39.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:39.948 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:39.958 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:39.958 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:39.968 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:36:39.968 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:36:39.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:40.018 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:40.218 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:40.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:40.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:40.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) start.
17-03-17 20:36:40.258 -07 000000012 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:36:40.258 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:40.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 20:36:40.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:36:40.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:40.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:40.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:36:40.358 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:40.358 -07 000000431 INF: Autofocus start
17-03-17 20:36:40.358 -07 000000431 INF: MeasureProfile start
17-03-17 20:36:40.358 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:40.368 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:40.368 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:40.368 -07 000000431 INF: MeasureProfile done
17-03-17 20:36:40.368 -07 000000431 INF: X=-8  Z correction [um]=-0.04234553
17-03-17 20:36:40.368 -07 000000431 INF: Autofocus finished
17-03-17 20:36:40.568 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:40.568 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:40.578 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.137533816338913. ----------
17-03-17 20:36:40.578 -07 000000610 INF: Cycle	40	Tile	12	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:40.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28545, sync = True, waitForSettling = True)
17-03-17 20:36:40.578 -07 000000610 INF: Z Motor: Moving to -0.130671 mm, started at -0.137534 mm, distance = 6.86 um
17-03-17 20:36:40.578 -07 000000610 INF: FPGA: Xmit ZDACW 28545\n [Z Motor]
17-03-17 20:36:40.578 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:36:40.588 -07 000000610 INF: FPGA: 'ZDACW 28545' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:40.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:40.588 -07 000000627 INF: FPGA: Recv ZDACR 28545
17-03-17 20:36:40.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.748 -07 000000551 INF: FPGA: Recv ZSGSRD 29627
17-03-17 20:36:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29631
17-03-17 20:36:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.768 -07 000000433 INF: FPGA: Recv ZSGSRD 29624
17-03-17 20:36:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29630
17-03-17 20:36:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.788 -07 000000431 INF: FPGA: Recv ZSGSRD 29632
17-03-17 20:36:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.798 -07 000000431 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:36:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.808 -07 000000431 INF: FPGA: Recv ZSGSRD 29633
17-03-17 20:36:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29630
17-03-17 20:36:40.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:36:40.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:40.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:36:40.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:40.848 -07 000000415 INF: FPGA: Recv ZPIEZORD 25331
17-03-17 20:36:40.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:40.858 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.4 V.
17-03-17 20:36:40.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29629 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29630 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29624 (-129.9 uncal um), Max = 29633 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:36:40.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29629, posNoise = 4, negNoise = 5
17-03-17 20:36:40.858 -07 000000610 INF: Z Motor: After move to -0.130671, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:40.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:36:40.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:40.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:40.858 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:40.858 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:40.858 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:40.858 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:40.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:40.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:40.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:40.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:40.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:40.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:40.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:40.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:40.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:40.868 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:40.878 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:36:40.878 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:36:40.878 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:36:40.878 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:36:40.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28722 150\n [Camera]
17-03-17 20:36:41.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:41.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:41.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:41.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:41.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:41.498 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:41.498 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:41.498 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:36:41.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:41.498 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:41.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:36:41.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28722 802
17-03-17 20:36:41.798 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:41.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:41.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:36:41.878 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:36:41.878 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:41.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:36:41.878 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:36:41.878 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:41.888 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:41.888 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:36:41.888 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:41.888 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:36:42.038 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:42.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:42.038 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:42.038 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:42.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:42.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:36:42.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:42.048 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:42.048 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:42.048 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:36:42.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:36:42.228 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:42.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28722 150' command took 2 ms to send, 1348 ms to get response, and 1352 ms overall
17-03-17 20:36:42.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:42.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.13066633355937. ------
17-03-17 20:36:42.358 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:42.358 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13719 mm
17-03-17 20:36:42.358 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:42.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:36:42.438 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:36:42.438 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:42.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:36:42.438 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:36:42.438 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:42.448 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:42.448 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:42.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:36:42.458 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:36:42.458 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:36:42.458 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 20:36:42.458 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:42.458 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:42.458 -07 000000012 INF: FPGA: Recv YRDPOS 141370
17-03-17 20:36:42.468 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:36:42.468 -07 000000429 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:42.468 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:42.468 -07 000000429 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:36:42.468 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:42.468 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 99 ms to get response, and 109 ms overall
17-03-17 20:36:42.468 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29969, sync = True, waitForSettling = False)
17-03-17 20:36:42.468 -07 000000012 INF: Z Motor: Moving to -0.137189 mm, started at -0.130666 mm, distance = -6.52 um
17-03-17 20:36:42.478 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:42.488 -07 000000012 INF: FPGA: Xmit ZDACW 29969\n [Z Motor]
17-03-17 20:36:43.458 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:36:43.458 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:43.458 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:36:43.458 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 971 ms to get response, and 989 ms overall
17-03-17 20:36:43.458 -07 000000012 INF: FPGA: 'ZDACW 29969' command took 0 ms to send, 961 ms to get response, and 989 ms overall
17-03-17 20:36:43.458 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:43.458 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 981 ms to get response, and 990 ms overall
17-03-17 20:36:43.458 -07 000000569 INF: FPGA: Recv ZDACR 29969
17-03-17 20:36:43.468 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:43.468 -07 000000012 INF: Z Motor: MoveAbsStepped took 998 ms (did NOT wait for settling yet))
17-03-17 20:36:43.498 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:43.498 -07 000000569 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:36:43.508 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:43.508 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:43.508 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:36:43.508 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 994 ms, distance = 0.844 mm, average velocity = 0.849 mm/sec
17-03-17 20:36:43.768 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.005817,
17-03-17 20:36:44.458 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:44.458 -07 000000448 INF: FPGA: Recv YRDPOS 143082
17-03-17 20:36:44.468 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:44.468 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:44.488 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:44.488 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:44.488 -07 000000429 INF: Y Motor: Moved to 69.8643 after 2028 ms (table move)
17-03-17 20:36:44.488 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137189 mm (DAC = 29969)
17-03-17 20:36:44.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.498 -07 000000415 INF: FPGA: Recv ZSGSRD 30647
17-03-17 20:36:44.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:36:44.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.498 -07 000000569 INF: FPGA: Recv ZSGSRD 30644
17-03-17 20:36:44.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:44.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30645
17-03-17 20:36:44.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.518 -07 000000569 INF: FPGA: Recv ZSGSRD 30647
17-03-17 20:36:44.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30647
17-03-17 20:36:44.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30648
17-03-17 20:36:44.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.548 -07 000000478 INF: FPGA: Recv ZSGSRD 30645
17-03-17 20:36:44.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.558 -07 000000415 INF: FPGA: Recv ZSGSRD 30644
17-03-17 20:36:44.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30641
17-03-17 20:36:44.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:44.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30644
17-03-17 20:36:44.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.588 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:44.588 -07 000000569 INF: FPGA: Recv ZPIEZORD 26693
17-03-17 20:36:44.598 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -8.7 V.
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30645 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30645 (-136.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30641 (-136.4 uncal um), Max = 30648 (-136.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30645, posNoise = 3, negNoise = 4
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: After move to -0.137189, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: Settle wait time = 2027 ms, measure time = 102 ms (allowed 150 ms), total time = 2129 ms
17-03-17 20:36:44.598 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:44.648 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2289 ms
17-03-17 20:36:44.648 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:44.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:44.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:44.648 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:44.648 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:44.648 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:44.648 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:44.658 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:44.658 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:44.658 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:44.658 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:44.668 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:44.668 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:36:44.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:44.708 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:44.908 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:44.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:44.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:44.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:36:44.948 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:44.948 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:44.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:36:45.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:36:45.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:45.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:36:45.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:36:45.058 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:45.058 -07 000000448 INF: Autofocus start
17-03-17 20:36:45.058 -07 000000448 INF: MeasureProfile start
17-03-17 20:36:45.058 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:45.068 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:45.068 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:45.078 -07 000000448 INF: MeasureProfile done
17-03-17 20:36:45.078 -07 000000448 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:36:45.078 -07 000000448 INF: Autofocus finished
17-03-17 20:36:45.268 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:45.268 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:36:45.268 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.1371933330954. ----------
17-03-17 20:36:45.278 -07 000000610 INF: Cycle	40	Tile	13	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:45.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28464, sync = True, waitForSettling = True)
17-03-17 20:36:45.278 -07 000000610 INF: Z Motor: Moving to -0.130300 mm, started at -0.137193 mm, distance = 6.89 um
17-03-17 20:36:45.278 -07 000000610 INF: FPGA: Xmit ZDACW 28464\n [Z Motor]
17-03-17 20:36:45.278 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:36:45.288 -07 000000610 INF: FPGA: 'ZDACW 28464' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:45.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:45.288 -07 000000012 INF: FPGA: Recv ZDACR 28464
17-03-17 20:36:45.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29571
17-03-17 20:36:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.458 -07 000000415 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:36:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29572
17-03-17 20:36:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.478 -07 000000458 INF: FPGA: Recv ZSGSRD 29568
17-03-17 20:36:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29581
17-03-17 20:36:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.498 -07 000000429 INF: FPGA: Recv ZSGSRD 29571
17-03-17 20:36:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29570
17-03-17 20:36:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.518 -07 000000012 INF: FPGA: Recv ZSGSRD 29574
17-03-17 20:36:45.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.528 -07 000000429 INF: FPGA: Recv ZSGSRD 29569
17-03-17 20:36:45.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:45.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:36:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:45.548 -07 000000429 INF: FPGA: Recv ZPIEZORD 25276
17-03-17 20:36:45.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:45.558 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.4 V.
17-03-17 20:36:45.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29573 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29572 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29568 (-129.5 uncal um), Max = 29581 (-129.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:36:45.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29573, posNoise = 8, negNoise = 5
17-03-17 20:36:45.558 -07 000000610 INF: Z Motor: After move to -0.130300, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:45.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:36:45.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:45.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:45.558 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:45.558 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:45.558 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:45.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:45.558 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:45.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:45.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:45.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:45.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:36:45.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:45.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:45.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:45.568 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:45.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:45.578 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:36:45.578 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:45.578 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:45.578 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:36:45.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28640 150\n [Camera]
17-03-17 20:36:45.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:46.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:46.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:46.198 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:46.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:46.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:46.198 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:46.198 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:46.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:36:46.198 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:46.198 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:36:46.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28640 802
17-03-17 20:36:46.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:46.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:36:46.598 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:36:46.598 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:46.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:36:46.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:36:46.598 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:46.598 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:46.598 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:36:46.608 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:46.608 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:36:46.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:46.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:46.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:46.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:46.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:46.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:46.848 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:46.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:36:46.848 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:46.848 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:46.848 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:36:46.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:46.928 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:46.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28640 150' command took 2 ms to send, 1346 ms to get response, and 1352 ms overall
17-03-17 20:36:46.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:46.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.130306577679432. ------
17-03-17 20:36:46.938 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13661 mm
17-03-17 20:36:46.938 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:46.938 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:47.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:36:47.228 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:36:47.228 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:47.228 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:47.238 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 20:36:47.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:36:47.238 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:36:47.238 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:47.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:47.248 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 20:36:47.258 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:36:47.258 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 20:36:47.258 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:47.258 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:47.258 -07 000000569 INF: FPGA: Recv YRDPOS 143083
17-03-17 20:36:47.258 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 318 ms to get response, and 326 ms overall
17-03-17 20:36:47.258 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29843, sync = True, waitForSettling = False)
17-03-17 20:36:47.268 -07 000000569 INF: Z Motor: Moving to -0.136612 mm, started at -0.130307 mm, distance = -6.31 um
17-03-17 20:36:47.268 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:47.268 -07 000000626 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:47.268 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:47.268 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:47.268 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:36:47.278 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:47.288 -07 000000569 INF: FPGA: Xmit ZDACW 29843\n [Z Motor]
17-03-17 20:36:48.238 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:36:48.238 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:48.238 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:36:48.238 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 950 ms to get response, and 963 ms overall
17-03-17 20:36:48.238 -07 000000569 INF: FPGA: 'ZDACW 29843' command took 0 ms to send, 940 ms to get response, and 970 ms overall
17-03-17 20:36:48.238 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:48.238 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 960 ms to get response, and 971 ms overall
17-03-17 20:36:48.238 -07 000000415 INF: FPGA: Recv ZDACR 29843
17-03-17 20:36:48.248 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:48.248 -07 000000569 INF: Z Motor: MoveAbsStepped took 980 ms (did NOT wait for settling yet))
17-03-17 20:36:48.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:48.278 -07 000000569 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:36:48.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:48.288 -07 000000626 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:48.288 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:36:48.288 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 964 ms, distance = 0.838 mm, average velocity = 0.870 mm/sec
17-03-17 20:36:49.138 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.98264,
17-03-17 20:36:49.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:49.238 -07 000000551 INF: FPGA: Recv YRDPOS 144772
17-03-17 20:36:49.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.248 -07 000000626 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:49.268 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:49.268 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:49.268 -07 000000626 INF: Y Motor: Moved to 70.6895 after 2013 ms (table move)
17-03-17 20:36:49.268 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136612 mm (DAC = 29843)
17-03-17 20:36:49.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.278 -07 000000482 INF: FPGA: Recv ZSGSRD 30560
17-03-17 20:36:49.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:36:49.278 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:36:49.288 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:49.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:36:49.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.298 -07 000000576 INF: FPGA: Recv ZSGSRD 30553
17-03-17 20:36:49.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.308 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.308 -07 000000415 INF: FPGA: Recv ZSGSRD 30557
17-03-17 20:36:49.318 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.318 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.318 -07 000000551 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:36:49.328 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.328 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:36:49.338 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.338 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30555
17-03-17 20:36:49.348 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.348 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30554
17-03-17 20:36:49.358 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.358 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:49.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30554
17-03-17 20:36:49.368 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.368 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:49.368 -07 000000415 INF: FPGA: Recv ZPIEZORD 26631
17-03-17 20:36:49.378 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -8.6 V.
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30556 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30556 (-135.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30553 (-135.8 uncal um), Max = 30560 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30556, posNoise = 4, negNoise = 3
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: After move to -0.136612, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: Settle wait time = 2008 ms, measure time = 102 ms (allowed 150 ms), total time = 2110 ms
17-03-17 20:36:49.378 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:49.428 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2488 ms
17-03-17 20:36:49.428 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:49.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:49.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:49.428 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:49.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:49.428 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:49.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:49.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:49.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:49.438 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:49.438 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:49.438 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:36:49.438 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:36:49.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:49.498 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:49.698 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:49.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:49.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:49.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) start.
17-03-17 20:36:49.738 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:49.738 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:49.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 293 ms overall
17-03-17 20:36:49.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:36:49.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:49.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:49.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:36:49.838 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:49.838 -07 000000482 INF: Autofocus start
17-03-17 20:36:49.838 -07 000000482 INF: MeasureProfile start
17-03-17 20:36:49.838 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:49.848 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:49.848 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:49.848 -07 000000482 INF: MeasureProfile done
17-03-17 20:36:49.848 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:36:49.848 -07 000000482 INF: Autofocus finished
17-03-17 20:36:50.048 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:50.048 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:36:50.048 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136621578214783. ----------
17-03-17 20:36:50.048 -07 000000610 INF: Cycle	40	Tile	14	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:50.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28368, sync = True, waitForSettling = True)
17-03-17 20:36:50.058 -07 000000610 INF: Z Motor: Moving to -0.129860 mm, started at -0.136622 mm, distance = 6.76 um
17-03-17 20:36:50.058 -07 000000610 INF: FPGA: Xmit ZDACW 28368\n [Z Motor]
17-03-17 20:36:50.058 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:36:50.068 -07 000000610 INF: FPGA: 'ZDACW 28368' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:50.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:50.068 -07 000000501 INF: FPGA: Recv ZDACR 28368
17-03-17 20:36:50.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.228 -07 000000551 INF: FPGA: Recv ZSGSRD 29499
17-03-17 20:36:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29504
17-03-17 20:36:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.248 -07 000000482 INF: FPGA: Recv ZSGSRD 29504
17-03-17 20:36:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.258 -07 000000476 INF: FPGA: Recv ZSGSRD 29508
17-03-17 20:36:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29503
17-03-17 20:36:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.278 -07 000000569 INF: FPGA: Recv ZSGSRD 29502
17-03-17 20:36:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29504
17-03-17 20:36:50.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29502
17-03-17 20:36:50.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.308 -07 000000627 INF: FPGA: Recv ZSGSRD 29501
17-03-17 20:36:50.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:50.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:36:50.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:50.328 -07 000000482 INF: FPGA: Recv ZPIEZORD 25194
17-03-17 20:36:50.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:50.338 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.5 V.
17-03-17 20:36:50.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29502 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29502 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29498 (-129.0 uncal um), Max = 29508 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:50.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29502, posNoise = 6, negNoise = 4
17-03-17 20:36:50.338 -07 000000610 INF: Z Motor: After move to -0.129860, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:50.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:36:50.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:50.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:50.338 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:50.338 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:50.338 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:50.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:50.338 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:50.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:50.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:50.338 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:50.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:50.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:50.348 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:50.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:36:50.348 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:50.348 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:50.358 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:36:50.358 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:36:50.358 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:36:50.358 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:36:50.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28544 150\n [Camera]
17-03-17 20:36:50.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:36:50.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:50.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:50.978 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:50.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:50.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:50.988 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:50.988 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:50.988 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:36:50.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:50.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 20:36:51.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28544 802
17-03-17 20:36:51.328 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:51.378 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:36:51.378 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:36:51.378 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:51.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:36:51.388 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:36:51.388 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:51.388 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:51.388 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:36:51.388 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:51.398 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:36:51.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:51.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:51.528 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:51.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:51.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:51.528 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:51.528 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:51.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:36:51.528 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:51.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 20:36:51.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:51.718 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:51.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28544 150' command took 2 ms to send, 1343 ms to get response, and 1352 ms overall
17-03-17 20:36:51.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:51.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129850458617367. ------
17-03-17 20:36:51.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:51.718 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13634 mm
17-03-17 20:36:51.718 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:51.928 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:36:51.928 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:36:51.928 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:51.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:36:51.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:36:51.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:51.938 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:51.938 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:36:51.938 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:51.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:36:51.948 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:36:51.948 -07 000000458 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 20:36:51.948 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:51.948 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:51.948 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:51.948 -07 000000626 INF: FPGA: Recv YRDPOS 144773
17-03-17 20:36:51.948 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 231 ms overall
17-03-17 20:36:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:51.958 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:51.958 -07 000000458 INF: Y Motor: Encoder = 144773 = motor step 113103.9 = 70.6899 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:51.958 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:51.958 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29785, sync = True, waitForSettling = False)
17-03-17 20:36:51.958 -07 000000626 INF: Z Motor: Moving to -0.136347 mm, started at -0.129850 mm, distance = -6.50 um
17-03-17 20:36:51.958 -07 000000458 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:51.958 -07 000000458 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:36:51.968 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:51.978 -07 000000626 INF: FPGA: Xmit ZDACW 29785\n [Z Motor]
17-03-17 20:36:52.738 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:36:52.738 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:52.738 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:36:52.738 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 771 ms to get response, and 781 ms overall
17-03-17 20:36:52.738 -07 000000626 INF: FPGA: 'ZDACW 29785' command took 0 ms to send, 750 ms to get response, and 780 ms overall
17-03-17 20:36:52.738 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:52.738 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 760 ms to get response, and 775 ms overall
17-03-17 20:36:52.738 -07 000000431 INF: FPGA: Recv ZDACR 29785
17-03-17 20:36:52.748 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:52.748 -07 000000626 INF: Z Motor: MoveAbsStepped took 789 ms (did NOT wait for settling yet))
17-03-17 20:36:52.778 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:52.778 -07 000000626 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:36:52.788 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:52.788 -07 000000458 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:52.788 -07 000000458 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:36:52.788 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 777 ms, distance = 0.843 mm, average velocity = 1.085 mm/sec
17-03-17 20:36:53.738 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:53.738 -07 000000626 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:36:53.748 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.748 -07 000000458 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:53.768 -07 000000458 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:53.768 -07 000000458 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:36:53.768 -07 000000458 INF: Y Motor: Moved to 71.5200 after 1819 ms (table move)
17-03-17 20:36:53.768 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136347 mm (DAC = 29785)
17-03-17 20:36:53.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:36:53.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:36:53.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.778 -07 000000431 INF: FPGA: Recv ZSGSRD 30513
17-03-17 20:36:53.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.788 -07 000000458 INF: FPGA: Recv ZSGSRD 30511
17-03-17 20:36:53.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.798 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30513
17-03-17 20:36:53.808 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.808 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30516
17-03-17 20:36:53.818 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.818 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.818 -07 000000458 INF: FPGA: Recv ZSGSRD 30519
17-03-17 20:36:53.828 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.828 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30512
17-03-17 20:36:53.838 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.838 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.838 -07 000000458 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:36:53.848 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.848 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.848 -07 000000458 INF: FPGA: Recv ZSGSRD 30512
17-03-17 20:36:53.858 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.858 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:53.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30515
17-03-17 20:36:53.868 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.868 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:53.868 -07 000000431 INF: FPGA: Recv ZPIEZORD 26571
17-03-17 20:36:53.878 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30515 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30514 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30511 (-135.5 uncal um), Max = 30520 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30515, posNoise = 5, negNoise = 4
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: After move to -0.136347, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: Settle wait time = 1817 ms, measure time = 104 ms (allowed 150 ms), total time = 1921 ms
17-03-17 20:36:53.878 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:53.928 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2202 ms
17-03-17 20:36:53.928 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:53.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:53.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:53.928 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:53.928 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:53.928 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:53.928 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:53.928 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:53.928 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:53.938 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:53.938 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:53.938 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:53.938 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:36:53.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:53.988 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:54.188 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:54.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:54.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:54.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:36:54.228 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:54.228 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:54.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:36:54.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:36:54.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:54.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:54.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:36:54.328 -07 000000626 INF: Autofocus start
17-03-17 20:36:54.328 -07 000000626 INF: MeasureProfile start
17-03-17 20:36:54.328 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:54.328 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:54.338 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:36:54.338 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:54.338 -07 000000626 INF: MeasureProfile done
17-03-17 20:36:54.338 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:36:54.338 -07 000000626 INF: Autofocus finished
17-03-17 20:36:54.498 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.959467,
17-03-17 20:36:54.538 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:54.538 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:36:54.538 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136358185516971. ----------
17-03-17 20:36:54.538 -07 000000610 INF: Cycle	40	Tile	15	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:54.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28309, sync = True, waitForSettling = True)
17-03-17 20:36:54.548 -07 000000610 INF: Z Motor: Moving to -0.129590 mm, started at -0.136358 mm, distance = 6.77 um
17-03-17 20:36:54.548 -07 000000610 INF: FPGA: Xmit ZDACW 28309\n [Z Motor]
17-03-17 20:36:54.548 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:36:54.558 -07 000000610 INF: FPGA: 'ZDACW 28309' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:36:54.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:54.558 -07 000000438 INF: FPGA: Recv ZDACR 28309
17-03-17 20:36:54.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29460
17-03-17 20:36:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29469
17-03-17 20:36:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.738 -07 000000438 INF: FPGA: Recv ZSGSRD 29464
17-03-17 20:36:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.748 -07 000000012 INF: FPGA: Recv ZSGSRD 29457
17-03-17 20:36:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29456
17-03-17 20:36:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29462
17-03-17 20:36:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.778 -07 000000626 INF: FPGA: Recv ZSGSRD 29463
17-03-17 20:36:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.788 -07 000000448 INF: FPGA: Recv ZSGSRD 29464
17-03-17 20:36:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29454
17-03-17 20:36:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:54.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29465
17-03-17 20:36:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:54.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:54.838 -07 000000438 INF: FPGA: Recv ZPIEZORD 25187
17-03-17 20:36:54.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:54.848 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.4 V.
17-03-17 20:36:54.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29461 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29462 (-128.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29454 (-128.8 uncal um), Max = 29469 (-128.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:36:54.848 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29461, posNoise = 8, negNoise = 7
17-03-17 20:36:54.848 -07 000000610 INF: Z Motor: After move to -0.129590, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:54.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 20:36:54.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:54.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:54.848 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:54.848 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:54.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:54.848 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:54.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:54.848 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:54.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:36:54.848 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:54.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:54.848 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:54.848 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:36:54.858 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:36:54.858 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:54.858 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:54.868 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:36:54.868 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:36:54.868 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:36:54.868 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:36:54.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28485 150\n [Camera]
17-03-17 20:36:55.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:55.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:55.488 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:55.488 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:55.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:36:55.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:55.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:55.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:55.498 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:55.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:36:55.688 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 802
17-03-17 20:36:55.828 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:55.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:36:55.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:36:55.888 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:55.898 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:55.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:36:55.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:36:55.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:36:55.898 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:55.898 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:55.908 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:36:56.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:36:56.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:36:56.038 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:56.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:36:56.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:36:56.148 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:56.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:56.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:36:56.148 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:56.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:36:56.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:36:56.228 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:36:56.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28485 150' command took 2 ms to send, 1342 ms to get response, and 1353 ms overall
17-03-17 20:36:56.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:36:56.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129587065919555. ------
17-03-17 20:36:56.228 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:56.228 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13542 mm
17-03-17 20:36:56.228 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:36:56.228 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:36:56.228 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 20:36:56.228 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29583, sync = True, waitForSettling = False)
17-03-17 20:36:56.228 -07 000000569 INF: Z Motor: Moving to -0.135422 mm, started at -0.129587 mm, distance = -5.84 um
17-03-17 20:36:56.238 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:56.238 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:36:56.238 -07 000000569 INF: FPGA: Xmit ZDACW 29583\n [Z Motor]
17-03-17 20:36:56.238 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:36:56.248 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:36:56.248 -07 000000569 INF: FPGA: 'ZDACW 29583' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:56.258 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:56.258 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 20:36:56.268 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:36:56.268 -07 000000438 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:56.268 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:36:56.268 -07 000000438 INF: Y Motor: Moving 1348 steps-26
17-03-17 20:36:56.268 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:56.268 -07 000000012 INF: FPGA: Recv ZDACR 29583
17-03-17 20:36:56.278 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:36:56.278 -07 000000569 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:36:56.278 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:36:56.448 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:36:56.448 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:36:56.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:36:56.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:36:56.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:56.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:36:56.548 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:36:56.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:56.548 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:56.548 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:36:56.548 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:36:56.558 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:36:56.658 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:36:56.658 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 20:36:56.688 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:56.698 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:36:56.698 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:36:56.698 -07 000000438 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:56.698 -07 000000438 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 20:36:56.698 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 20:36:56.798 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:36:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:36:57.648 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:36:57.648 -07 000000476 INF: FPGA: Recv YRDPOS 148174
17-03-17 20:36:57.658 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:57.658 -07 000000438 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:36:57.678 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:36:57.678 -07 000000438 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:36:57.678 -07 000000438 INF: Y Motor: Moved to 72.3506 after 1444 ms (table move)
17-03-17 20:36:57.678 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135422 mm (DAC = 29583)
17-03-17 20:36:57.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30373
17-03-17 20:36:57.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:36:57.688 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30375
17-03-17 20:36:57.698 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.698 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.698 -07 000000476 INF: FPGA: Recv ZSGSRD 30374
17-03-17 20:36:57.708 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.708 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.708 -07 000000415 INF: FPGA: Recv ZSGSRD 30369
17-03-17 20:36:57.718 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.718 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30365
17-03-17 20:36:57.728 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.728 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30371
17-03-17 20:36:57.738 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.738 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.738 -07 000000569 INF: FPGA: Recv ZSGSRD 30370
17-03-17 20:36:57.748 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.748 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30368
17-03-17 20:36:57.758 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.758 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.758 -07 000000476 INF: FPGA: Recv ZSGSRD 30372
17-03-17 20:36:57.768 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.768 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:57.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30376
17-03-17 20:36:57.778 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.778 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:57.778 -07 000000569 INF: FPGA: Recv ZPIEZORD 26415
17-03-17 20:36:57.788 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -8.7 V.
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30371 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30372 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30365 (-134.6 uncal um), Max = 30376 (-134.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30371, posNoise = 5, negNoise = 6
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: After move to -0.135422, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:36:57.788 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:36:57.838 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:36:57.838 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:36:57.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:57.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:57.838 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:57.838 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:36:57.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:57.848 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:57.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:57.848 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:36:57.848 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:57.848 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:36:57.858 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:36:57.858 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:36:57.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:36:57.898 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:36:58.098 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:36:58.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:36:58.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:36:58.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:36:58.138 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:36:58.138 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:36:58.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:36:58.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:36:58.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:58.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:36:58.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:36:58.338 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:36:58.338 -07 000000569 INF: Autofocus start
17-03-17 20:36:58.338 -07 000000569 INF: MeasureProfile start
17-03-17 20:36:58.338 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:36:58.348 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:36:58.348 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:36:58.348 -07 000000569 INF: MeasureProfile done
17-03-17 20:36:58.348 -07 000000569 INF: X=48  Z correction [um]=0.2069503
17-03-17 20:36:58.348 -07 000000569 INF: Autofocus finished
17-03-17 20:36:58.548 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:36:58.548 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:36:58.548 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.135433098968557. ----------
17-03-17 20:36:58.548 -07 000000610 INF: Cycle	40	Tile	16	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:36:58.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28141, sync = True, waitForSettling = True)
17-03-17 20:36:58.558 -07 000000610 INF: Z Motor: Moving to -0.128821 mm, started at -0.135433 mm, distance = 6.61 um
17-03-17 20:36:58.558 -07 000000610 INF: FPGA: Xmit ZDACW 28141\n [Z Motor]
17-03-17 20:36:58.558 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:36:58.568 -07 000000610 INF: FPGA: 'ZDACW 28141' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:36:58.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:36:58.568 -07 000000476 INF: FPGA: Recv ZDACR 28141
17-03-17 20:36:58.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:36:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.728 -07 000000569 INF: FPGA: Recv ZSGSRD 29348
17-03-17 20:36:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:36:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29337
17-03-17 20:36:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.748 -07 000000569 INF: FPGA: Recv ZSGSRD 29343
17-03-17 20:36:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29337
17-03-17 20:36:58.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29346
17-03-17 20:36:58.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.778 -07 000000476 INF: FPGA: Recv ZSGSRD 29345
17-03-17 20:36:58.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.788 -07 000000569 INF: FPGA: Recv ZSGSRD 29338
17-03-17 20:36:58.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.798 -07 000000476 INF: FPGA: Recv ZSGSRD 29351
17-03-17 20:36:58.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29344
17-03-17 20:36:58.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:36:58.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29343
17-03-17 20:36:58.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:36:58.828 -07 000000458 INF: FPGA: Recv ZPIEZORD 25070
17-03-17 20:36:58.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:36:58.838 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.4 V.
17-03-17 20:36:58.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29343 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29337 (-128.0 uncal um), Max = 29351 (-128.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:36:58.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29343, posNoise = 8, negNoise = 6
17-03-17 20:36:58.838 -07 000000610 INF: Z Motor: After move to -0.128821, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:36:58.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:36:58.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:36:58.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:36:58.838 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:36:58.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:36:58.838 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:36:58.838 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:36:58.838 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:36:58.838 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:36:58.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:36:58.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:36:58.838 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:36:58.838 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:36:58.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:36:58.848 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:36:58.848 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:36:58.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:36:58.848 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:36:58.848 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:36:58.858 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:36:58.858 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:36:58.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28317 150\n [Camera]
17-03-17 20:36:59.058 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:36:59.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:36:59.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:36:59.478 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:36:59.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:36:59.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:36:59.478 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:36:59.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:36:59.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 20:36:59.478 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:36:59.588 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 20:36:59.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28317 804
17-03-17 20:36:59.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:36:59.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:36:59.868 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:36:59.868 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:59.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:36:59.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:36:59.908 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.975845,
17-03-17 20:36:59.978 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:36:59.978 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 20:36:59.978 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:36:59.988 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:36:59.988 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 20:37:00.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:37:00.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:37:00.018 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:00.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:37:00.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:37:00.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:00.028 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:00.028 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:37:00.028 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:00.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:37:00.208 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:37:00.208 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:37:00.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28317 150' command took 2 ms to send, 1347 ms to get response, and 1353 ms overall
17-03-17 20:37:00.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:37:00.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3505859375, Z-Position -0.128829008886827. ------
17-03-17 20:37:00.218 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13536 mm
17-03-17 20:37:00.218 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:37:00.218 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:37:00.218 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 20:37:00.218 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29568, sync = True, waitForSettling = False)
17-03-17 20:37:00.228 -07 000000429 INF: Z Motor: Moving to -0.135354 mm, started at -0.128829 mm, distance = -6.52 um
17-03-17 20:37:00.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:00.228 -07 000000433 INF: FPGA: Recv YRDPOS 148174
17-03-17 20:37:00.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:00.238 -07 000000438 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:00.238 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:37:00.238 -07 000000438 INF: Y Motor: Moving 1347 steps-26
17-03-17 20:37:00.238 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:00.238 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:00.248 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:37:00.248 -07 000000429 INF: FPGA: Xmit ZDACW 29568\n [Z Motor]
17-03-17 20:37:00.248 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:37:00.258 -07 000000429 INF: FPGA: 'ZDACW 29568' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:37:00.268 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:37:00.278 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:37:00.288 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:00.288 -07 000000501 INF: FPGA: Recv ZDACR 29568
17-03-17 20:37:00.298 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:37:00.298 -07 000000429 INF: Z Motor: MoveAbsStepped took 70 ms (did NOT wait for settling yet))
17-03-17 20:37:00.408 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:37:00.408 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:37:00.408 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:00.408 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:37:00.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:37:00.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:37:00.408 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:00.418 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:37:00.418 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:37:00.418 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:37:00.478 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:37:00.478 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 20:37:00.638 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:37:00.638 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 20:37:00.678 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:00.678 -07 000000429 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:37:00.688 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:00.688 -07 000000438 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:00.688 -07 000000438 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:37:00.688 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.842 mm, average velocity = 2.064 mm/sec
17-03-17 20:37:01.638 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:01.638 -07 000000576 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:37:01.648 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:01.648 -07 000000438 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:01.668 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:37:01.668 -07 000000438 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:37:01.668 -07 000000438 INF: Y Motor: Moved to 73.1768 after 1442 ms (table move)
17-03-17 20:37:01.668 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135354 mm (DAC = 29568)
17-03-17 20:37:01.668 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30360
17-03-17 20:37:01.678 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:37:01.678 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:37:01.688 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.688 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30357
17-03-17 20:37:01.698 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.698 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.698 -07 000000429 INF: FPGA: Recv ZSGSRD 30360
17-03-17 20:37:01.708 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.708 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.708 -07 000000551 INF: FPGA: Recv ZSGSRD 30361
17-03-17 20:37:01.718 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.718 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30366
17-03-17 20:37:01.728 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.728 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.728 -07 000000476 INF: FPGA: Recv ZSGSRD 30362
17-03-17 20:37:01.738 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.738 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30358
17-03-17 20:37:01.748 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.748 -07 000000551 INF: FPGA: Recv ZSGSRD 30354
17-03-17 20:37:01.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:01.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30355
17-03-17 20:37:01.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.768 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:01.768 -07 000000012 INF: FPGA: Recv ZPIEZORD 26371
17-03-17 20:37:01.778 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -8.8 V.
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30359 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30359 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30354 (-134.5 uncal um), Max = 30366 (-134.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30359, posNoise = 7, negNoise = 5
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: After move to -0.135354, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:37:01.778 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:37:01.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:37:01.828 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:37:01.828 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:37:01.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:01.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:01.828 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:01.828 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:37:01.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:01.828 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:01.828 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:01.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:37:01.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:37:01.838 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:37:01.848 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:37:01.848 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 20:37:01.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:37:01.898 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:37:02.098 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:37:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:37:02.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:37:02.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:37:02.138 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:37:02.138 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:37:02.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 20:37:02.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:37:02.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:02.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:37:02.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:37:02.238 -07 000000551 INF: Autofocus start
17-03-17 20:37:02.238 -07 000000551 INF: MeasureProfile start
17-03-17 20:37:02.238 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:02.238 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:02.248 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:37:02.248 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:37:02.248 -07 000000551 INF: MeasureProfile done
17-03-17 20:37:02.248 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:37:02.248 -07 000000551 INF: Autofocus finished
17-03-17 20:37:02.448 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:37:02.448 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:37:02.448 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135356008422856. ----------
17-03-17 20:37:02.448 -07 000000610 INF: Cycle	40	Tile	17	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:37:02.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28076, sync = True, waitForSettling = True)
17-03-17 20:37:02.458 -07 000000610 INF: Z Motor: Moving to -0.128524 mm, started at -0.135356 mm, distance = 6.83 um
17-03-17 20:37:02.458 -07 000000610 INF: FPGA: Xmit ZDACW 28076\n [Z Motor]
17-03-17 20:37:02.458 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:37:02.468 -07 000000610 INF: FPGA: 'ZDACW 28076' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:37:02.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:02.468 -07 000000551 INF: FPGA: Recv ZDACR 28076
17-03-17 20:37:02.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:37:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.628 -07 000000627 INF: FPGA: Recv ZSGSRD 29297
17-03-17 20:37:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.638 -07 000000012 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:37:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:37:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.658 -07 000000476 INF: FPGA: Recv ZSGSRD 29296
17-03-17 20:37:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29296
17-03-17 20:37:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.678 -07 000000551 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:37:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.688 -07 000000569 INF: FPGA: Recv ZSGSRD 29292
17-03-17 20:37:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.698 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:37:02.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.708 -07 000000569 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:37:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:02.718 -07 000000569 INF: FPGA: Recv ZSGSRD 29296
17-03-17 20:37:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:02.728 -07 000000627 INF: FPGA: Recv ZPIEZORD 24998
17-03-17 20:37:02.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:02.738 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.4 V.
17-03-17 20:37:02.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29296 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29292 (-127.7 uncal um), Max = 29298 (-127.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:37:02.738 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29296, posNoise = 2, negNoise = 4
17-03-17 20:37:02.738 -07 000000610 INF: Z Motor: After move to -0.128524, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:02.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:37:02.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:02.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:02.738 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:02.738 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:02.738 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:37:02.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:02.738 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:37:02.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:37:02.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:02.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:37:02.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:37:02.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:37:02.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:37:02.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:37:02.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:37:02.748 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:37:02.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:37:02.758 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:37:02.758 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:37:02.758 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:37:02.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28252 150\n [Camera]
17-03-17 20:37:02.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:37:03.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:37:03.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:37:03.378 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:03.378 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:03.378 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:37:03.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:37:03.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:37:03.378 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:03.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:03.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:37:03.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28252 804
17-03-17 20:37:03.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:37:03.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:37:03.748 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:37:03.748 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:03.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:37:03.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:37:03.748 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:03.758 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:03.758 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:03.758 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:37:03.768 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:37:03.918 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:37:03.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:37:03.918 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:03.918 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:03.918 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:37:03.918 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:37:03.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:37:03.918 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:03.918 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:03.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:37:04.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-17 20:37:04.108 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:37:04.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28252 150' command took 2 ms to send, 1345 ms to get response, and 1351 ms overall
17-03-17 20:37:04.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:37:04.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128527070916164. ------
17-03-17 20:37:04.118 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:04.118 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13492 mm
17-03-17 20:37:04.118 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:37:04.118 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:37:04.118 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:04.118 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29473, sync = True, waitForSettling = False)
17-03-17 20:37:04.118 -07 000000478 INF: Z Motor: Moving to -0.134919 mm, started at -0.128527 mm, distance = -6.39 um
17-03-17 20:37:04.118 -07 000000431 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 20:37:04.128 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:04.128 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:37:04.138 -07 000000478 INF: FPGA: Xmit ZDACW 29473\n [Z Motor]
17-03-17 20:37:04.138 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:37:04.148 -07 000000478 INF: FPGA: 'ZDACW 29473' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:37:04.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:04.148 -07 000000576 INF: FPGA: Recv YRDPOS 149867
17-03-17 20:37:04.158 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:04.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 20:37:04.158 -07 000000431 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:04.158 -07 000000551 INF: FPGA: Recv ZDACR 29473
17-03-17 20:37:04.158 -07 000000431 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:37:04.158 -07 000000431 INF: Y Motor: Moving 1353 steps-32
17-03-17 20:37:04.168 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:37:04.168 -07 000000478 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:37:04.168 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:37:04.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:37:04.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:37:04.318 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:04.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:37:04.328 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:37:04.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:04.328 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:37:04.328 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:37:04.328 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:04.328 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:37:04.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:04.338 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:37:04.538 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:37:04.538 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 20:37:04.568 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:04.578 -07 000000576 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:37:04.578 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:37:04.578 -07 000000431 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:04.578 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:37:04.578 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.197 mm/sec
17-03-17 20:37:05.268 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 3.981281,
17-03-17 20:37:05.528 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:05.528 -07 000000551 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:37:05.538 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:05.538 -07 000000431 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:05.548 -07 000000431 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:37:05.548 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:37:05.548 -07 000000431 INF: Y Motor: Moved to 74.0088 after 1433 ms (table move)
17-03-17 20:37:05.558 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134919 mm (DAC = 29473)
17-03-17 20:37:05.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.558 -07 000000431 INF: FPGA: Recv ZSGSRD 30293
17-03-17 20:37:05.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.568 -07 000000431 INF: FPGA: Recv ZSGSRD 30288
17-03-17 20:37:05.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.578 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30298
17-03-17 20:37:05.588 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:05.588 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.588 -07 000000478 INF: FPGA: Recv ZSGSRD 30294
17-03-17 20:37:05.598 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.598 -07 000000415 INF: FPGA: Recv ZSGSRD 30293
17-03-17 20:37:05.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.608 -07 000000501 INF: FPGA: Recv ZSGSRD 30293
17-03-17 20:37:05.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.618 -07 000000476 INF: FPGA: Recv ZSGSRD 30293
17-03-17 20:37:05.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.638 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.638 -07 000000012 INF: FPGA: Recv ZSGSRD 30294
17-03-17 20:37:05.648 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:37:05.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.648 -07 000000012 INF: FPGA: Recv ZSGSRD 30294
17-03-17 20:37:05.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:05.678 -07 000000476 INF: FPGA: Recv ZSGSRD 30286
17-03-17 20:37:05.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:37:05.688 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:05.688 -07 000000476 INF: FPGA: Recv ZPIEZORD 26336
17-03-17 20:37:05.698 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -8.7 V.
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30293 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30293 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30286 (-134.1 uncal um), Max = 30298 (-134.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30293, posNoise = 5, negNoise = 7
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: After move to -0.134919, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: Settle wait time = 1436 ms, measure time = 140 ms (allowed 150 ms), total time = 1576 ms
17-03-17 20:37:05.698 -07 000000448 INF: Z Motor: Waiting extra 10 ms after reading position to reach expected total of 150 ms
17-03-17 20:37:05.708 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 20:37:05.708 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:37:05.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:05.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:05.708 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:05.708 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:05.708 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:37:05.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:05.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:05.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:37:05.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:37:05.718 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:37:05.728 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 20:37:05.728 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 20:37:05.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:37:05.778 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:37:05.978 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:37:05.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:37:05.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:37:05.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) start.
17-03-17 20:37:06.018 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:37:06.018 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:37:06.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:37:06.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:37:06.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:06.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:37:06.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:37:06.118 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:06.118 -07 000000501 INF: Autofocus start
17-03-17 20:37:06.118 -07 000000501 INF: MeasureProfile start
17-03-17 20:37:06.118 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:06.128 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:06.128 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:37:06.138 -07 000000501 INF: MeasureProfile done
17-03-17 20:37:06.138 -07 000000501 INF: X=-18  Z correction [um]=-0.09102372
17-03-17 20:37:06.138 -07 000000501 INF: Autofocus finished
17-03-17 20:37:06.328 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:37:06.328 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:37:06.328 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.1349320104215. ----------
17-03-17 20:37:06.338 -07 000000610 INF: Cycle	40	Tile	18	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:37:06.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27966, sync = True, waitForSettling = True)
17-03-17 20:37:06.338 -07 000000610 INF: Z Motor: Moving to -0.128020 mm, started at -0.134932 mm, distance = 6.91 um
17-03-17 20:37:06.338 -07 000000610 INF: FPGA: Xmit ZDACW 27966\n [Z Motor]
17-03-17 20:37:06.338 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:37:06.348 -07 000000610 INF: FPGA: 'ZDACW 27966' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:06.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:06.348 -07 000000501 INF: FPGA: Recv ZDACR 27966
17-03-17 20:37:06.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:37:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.508 -07 000000501 INF: FPGA: Recv ZSGSRD 29219
17-03-17 20:37:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.518 -07 000000569 INF: FPGA: Recv ZSGSRD 29211
17-03-17 20:37:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29219
17-03-17 20:37:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29219
17-03-17 20:37:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:37:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.558 -07 000000569 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:37:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.568 -07 000000431 INF: FPGA: Recv ZSGSRD 29222
17-03-17 20:37:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29219
17-03-17 20:37:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:37:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:06.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29216
17-03-17 20:37:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:06.608 -07 000000476 INF: FPGA: Recv ZPIEZORD 24911
17-03-17 20:37:06.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:06.618 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.5 V.
17-03-17 20:37:06.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29217 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29211 (-127.2 uncal um), Max = 29222 (-127.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:37:06.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29217, posNoise = 5, negNoise = 6
17-03-17 20:37:06.618 -07 000000610 INF: Z Motor: After move to -0.128020, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:06.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:37:06.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:06.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:06.618 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:06.618 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:37:06.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:37:06.618 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:06.618 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:37:06.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:06.618 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:37:06.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:37:06.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:06.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:37:06.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:37:06.628 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:37:06.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:37:06.628 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:37:06.638 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:37:06.638 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:37:06.638 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:37:06.638 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:37:06.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28143 150\n [Camera]
17-03-17 20:37:06.798 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:37:06.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:37:07.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:37:07.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:37:07.258 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:07.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:07.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:37:07.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:37:07.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:37:07.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:07.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:07.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:37:07.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28143 802
17-03-17 20:37:07.598 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:37:07.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:37:07.638 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:37:07.638 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:07.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:37:07.638 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:37:07.638 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:07.648 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:37:07.648 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:37:07.648 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:37:07.658 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:37:07.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:37:07.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:37:07.798 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:07.808 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:07.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:37:07.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:37:07.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:37:07.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:07.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:07.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:37:07.988 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:37:07.998 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:37:07.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28143 150' command took 2 ms to send, 1340 ms to get response, and 1351 ms overall
17-03-17 20:37:07.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:37:07.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128019558156965. ------
17-03-17 20:37:07.998 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:07.998 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13442 mm
17-03-17 20:37:07.998 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:37:07.998 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:07.998 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29364, sync = True, waitForSettling = False)
17-03-17 20:37:07.998 -07 000000431 INF: Z Motor: Moving to -0.134420 mm, started at -0.128020 mm, distance = -6.40 um
17-03-17 20:37:08.008 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:37:08.008 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:37:08.008 -07 000000482 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 20:37:08.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:08.008 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 20:37:08.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:08.018 -07 000000482 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:08.018 -07 000000482 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:37:08.018 -07 000000482 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:37:08.018 -07 000000431 INF: FPGA: Xmit ZDACW 29364\n [Z Motor]
17-03-17 20:37:08.018 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:37:08.028 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:37:08.028 -07 000000431 INF: FPGA: 'ZDACW 29364' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:37:08.038 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:37:08.048 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:08.048 -07 000000438 INF: FPGA: Recv ZDACR 29364
17-03-17 20:37:08.058 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:37:08.058 -07 000000431 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:37:08.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:37:08.198 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:37:08.198 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:08.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:37:08.198 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:37:08.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:08.208 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:08.208 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:37:08.208 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:08.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:37:08.228 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:37:08.228 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:37:08.408 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:37:08.408 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 20:37:08.438 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:08.438 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:37:08.448 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:08.448 -07 000000482 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:08.448 -07 000000482 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:37:08.448 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 20:37:09.398 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:09.398 -07 000000476 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:37:09.408 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:09.408 -07 000000482 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:09.418 -07 000000482 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:37:09.418 -07 000000482 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:37:09.418 -07 000000482 INF: Y Motor: Moved to 74.8330 after 1415 ms (table move)
17-03-17 20:37:09.418 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134420 mm (DAC = 29364)
17-03-17 20:37:09.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:37:09.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:37:09.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30215
17-03-17 20:37:09.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:37:09.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.438 -07 000000482 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:37:09.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30209
17-03-17 20:37:09.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30206
17-03-17 20:37:09.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.468 -07 000000458 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:37:09.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.478 -07 000000429 INF: FPGA: Recv ZSGSRD 30217
17-03-17 20:37:09.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30222
17-03-17 20:37:09.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.498 -07 000000012 INF: FPGA: Recv ZSGSRD 30215
17-03-17 20:37:09.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:09.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30214
17-03-17 20:37:09.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.518 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:09.518 -07 000000627 INF: FPGA: Recv ZPIEZORD 26224
17-03-17 20:37:09.528 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -8.8 V.
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30213 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30212 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30206 (-133.6 uncal um), Max = 30222 (-133.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30213, posNoise = 9, negNoise = 7
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: After move to -0.134420, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: Settle wait time = 1419 ms, measure time = 103 ms (allowed 150 ms), total time = 1522 ms
17-03-17 20:37:09.528 -07 000000433 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:37:09.578 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 20:37:09.578 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:37:09.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:09.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:09.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:09.578 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:09.578 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:37:09.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:09.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:09.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:37:09.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:37:09.588 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:37:09.598 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:37:09.598 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:37:09.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:37:09.648 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:37:09.848 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:37:09.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:37:09.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:37:09.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1127551136, 0x0, 559484976) start.
17-03-17 20:37:09.888 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:37:09.888 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:37:09.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 20:37:09.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1127551136, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:37:09.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:09.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:37:09.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:37:09.988 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:37:09.988 -07 000000431 INF: Autofocus start
17-03-17 20:37:09.988 -07 000000431 INF: MeasureProfile start
17-03-17 20:37:09.988 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:37:09.998 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:09.998 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:37:09.998 -07 000000431 INF: MeasureProfile done
17-03-17 20:37:09.998 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:37:09.998 -07 000000431 INF: Autofocus finished
17-03-17 20:37:10.198 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:37:10.198 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:37:10.198 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134418073450159. ----------
17-03-17 20:37:10.208 -07 000000610 INF: Cycle	40	Tile	19	Exposure Settings		A	417	G	200	T	200	C	417
17-03-17 20:37:10.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27871, sync = True, waitForSettling = True)
17-03-17 20:37:10.208 -07 000000610 INF: Z Motor: Moving to -0.127585 mm, started at -0.134418 mm, distance = 6.83 um
17-03-17 20:37:10.208 -07 000000610 INF: FPGA: Xmit ZDACW 27871\n [Z Motor]
17-03-17 20:37:10.208 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:37:10.218 -07 000000610 INF: FPGA: 'ZDACW 27871' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:37:10.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:37:10.218 -07 000000438 INF: FPGA: Recv ZDACR 27871
17-03-17 20:37:10.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:37:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.378 -07 000000012 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:37:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:10.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.388 -07 000000458 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:37:10.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29146
17-03-17 20:37:10.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.408 -07 000000458 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:37:10.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.418 -07 000000012 INF: FPGA: Recv ZSGSRD 29153
17-03-17 20:37:10.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.428 -07 000000458 INF: FPGA: Recv ZSGSRD 29146
17-03-17 20:37:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:37:10.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29154
17-03-17 20:37:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.458 -07 000000458 INF: FPGA: Recv ZSGSRD 29148
17-03-17 20:37:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:37:10.468 -07 000000012 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:37:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:37:10.478 -07 000000458 INF: FPGA: Recv ZPIEZORD 24796
17-03-17 20:37:10.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:10.488 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.6 V.
17-03-17 20:37:10.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29150 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29150 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29146 (-126.8 uncal um), Max = 29154 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:37:10.488 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29150, posNoise = 4, negNoise = 4
17-03-17 20:37:10.488 -07 000000610 INF: Z Motor: After move to -0.127585, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:37:10.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:37:10.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:37:10.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:37:10.488 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:37:10.488 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:37:10.488 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:37:10.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:37:10.488 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:37:10.488 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:37:10.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:37:10.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:37:10.488 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:37:10.488 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:37:10.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:37:10.488 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:37:10.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:37:10.498 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:37:10.498 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:37:10.498 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:37:10.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:37:10.508 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:37:10.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 417 417 200 200 28048 150\n [Camera]
17-03-17 20:37:10.628 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.014009,
17-03-17 20:37:10.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:37:11.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-17 20:37:11.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-17 20:37:11.128 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:11.128 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:11.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:37:11.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-17 20:37:11.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-17 20:37:11.128 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:11.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:11.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:37:11.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28048 802
17-03-17 20:37:11.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-17 20:37:11.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:37:11.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:37:11.518 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:37:11.518 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:11.518 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:37:11.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:11.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:37:11.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:37:11.518 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:37:11.528 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:37:11.668 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-17 20:37:11.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-17 20:37:11.668 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:37:11.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:37:11.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:37:11.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-17 20:37:11.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-17 20:37:11.678 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:37:11.678 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:37:11.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:37:11.798 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:11.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 39. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:37:11.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1345
17-03-17 20:37:11.858 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:37:11.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 417 417 200 200 28048 150' command took 2 ms to send, 1346 ms to get response, and 1351 ms overall
17-03-17 20:37:12.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:37:12.048 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:37:12.048 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:12.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:37:12.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:37:12.048 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:37:12.058 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:37:12.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:37:12.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:37:12.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:37:12.068 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:37:12.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:37:12.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:37:12.148 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:37:12.158 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 20:37:12.158 -07 000000610 INF: Imaging Cycle 40: ScanTilesCommand Cycle 40 time end. Duration was 163902 ms.
17-03-17 20:37:12.158 -07 000000610 INF: =================== Cycle #40 ===================
17-03-17 20:37:12.158 -07 000000610 INF: ===================  ===================
17-03-17 20:37:12.158 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:37:12.168 -07 000000438 INF: FPGA: Recv EXLED1ADCR 21
17-03-17 20:37:12.168 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:37:12.168 -07 000000433 INF: GreenLED: Using Green data: Photodiode ADC 21 --> 0.0 mW (old method), or 1.5 mW (new method). Difference = 1.5 mW
17-03-17 20:37:12.168 -07 000000433 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 40, FrontChillerTemperature: 4.014009, FrontChillerHeatSinkTemperature: 0.614627, AmbientTemperature: 18.96074, FlowCellCompartmentTemperature: 21.98672, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.70845, GreenLEDSensorTemperature: 26.1044, PhotodiodePowerAdcGreen: 21, PhotodiodePowerMwGreen: 1.471122
17-03-17 20:37:12.198 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.